AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016163

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016163.t1 MTR_5g070440 69.708 274 83 0 1 274 1 274 4.49e-139 392
MS.gene016163.t1 MTR_3g005480 68.248 274 75 2 1 272 1 264 1.96e-133 378
MS.gene016163.t1 MTR_3g005490 68.000 275 77 2 1 274 1 265 7.41e-132 374
MS.gene016163.t1 MTR_3g005420 63.869 274 97 1 3 274 269 542 2.33e-116 345
MS.gene016163.t1 MTR_3g005420 56.554 267 92 3 1 265 20 264 7.98e-89 274
MS.gene016163.t1 MTR_3g005460 63.019 265 90 2 18 274 259 523 3.72e-109 325
MS.gene016163.t1 MTR_3g005460 52.256 266 100 3 1 262 1 243 1.69e-81 254
MS.gene016163.t1 MTR_3g005420 56.554 267 92 3 1 265 1 245 1.60e-89 274
MS.gene016163.t1 MTR_3g005420 53.650 274 90 2 3 274 250 488 1.11e-88 272
MS.gene016163.t1 MTR_3g005440 59.211 228 84 2 3 228 222 442 4.04e-81 251
MS.gene016163.t1 MTR_3g005440 47.479 238 74 3 30 265 29 217 3.88e-57 189
MS.gene016163.t1 MTR_3g005495 51.793 251 102 5 18 266 240 473 2.28e-76 240
MS.gene016163.t1 MTR_3g005495 50.617 243 87 4 30 271 24 234 6.24e-70 223
MS.gene016163.t1 MTR_1g015350 42.446 278 50 8 1 273 1 173 6.43e-48 157
MS.gene016163.t1 MTR_1g034240 45.455 99 54 0 21 119 7 105 1.37e-28 113
MS.gene016163.t1 MTR_1g034240 37.190 121 64 4 158 269 276 393 4.15e-14 72.0
MS.gene016163.t1 MTR_3g098790 26.804 291 174 6 20 271 12 302 2.52e-26 105
MS.gene016163.t1 MTR_3g061340 28.832 274 157 8 21 267 12 274 7.80e-25 100
MS.gene016163.t1 MTR_3g061310 28.777 278 163 6 21 267 12 285 1.59e-24 99.8
MS.gene016163.t1 MTR_3g061320 28.986 276 161 8 20 267 11 279 1.83e-24 99.8
MS.gene016163.t1 MTR_4g068320 41.176 102 60 0 18 119 3 104 2.44e-24 101
MS.gene016163.t1 MTR_4g068320 35.115 131 76 3 147 271 264 391 1.22e-14 73.6
MS.gene016163.t1 MTR_3g061350 27.338 278 166 6 21 267 12 284 5.11e-24 98.6
MS.gene016163.t1 MTR_3g061370 26.978 278 173 5 18 267 6 281 2.19e-23 96.7
MS.gene016163.t1 MTR_1g034210 43.820 89 50 0 21 109 7 95 2.65e-23 97.4
MS.gene016163.t1 MTR_7g050560 24.828 290 172 7 20 271 12 293 2.73e-23 97.1
MS.gene016163.t1 MTR_0152s0100 42.857 112 63 1 161 272 2 112 3.22e-23 91.7
MS.gene016163.t1 MTR_0152s0100 42.857 112 63 1 161 272 2 112 3.22e-23 91.7
MS.gene016163.t1 MTR_1g034210 43.820 89 50 0 21 109 7 95 6.29e-23 97.1
MS.gene016163.t1 MTR_1g034210 31.405 121 74 3 155 269 242 359 3.46e-11 63.2
MS.gene016163.t1 MTR_7g050710 26.421 299 173 7 20 271 12 310 3.06e-22 94.4
MS.gene016163.t1 MTR_8g103940 25.497 302 164 8 21 269 39 332 4.27e-22 95.5
MS.gene016163.t1 MTR_5g044670 24.490 294 176 8 21 271 16 306 2.01e-21 92.0
MS.gene016163.t1 MTR_1g035460 27.891 294 144 9 37 269 2 288 6.02e-21 91.7
MS.gene016163.t1 MTR_1g108780 26.027 292 146 8 36 269 12 291 7.49e-20 89.0
MS.gene016163.t1 MTR_7g050580 23.102 303 173 5 14 271 6 293 1.96e-19 86.7
MS.gene016163.t1 MTR_7g050720 25.552 317 174 9 12 268 1 315 6.52e-19 85.1
MS.gene016163.t1 MTR_3g061330 29.439 214 123 5 21 209 12 222 2.44e-17 79.7
MS.gene016163.t1 MTR_3g061290 39.000 100 59 1 20 119 11 108 1.29e-16 76.6
MS.gene016163.t1 MTR_1g021360 26.740 273 157 8 34 264 195 466 4.92e-15 75.1
MS.gene016163.t1 MTR_6g043890 25.084 299 167 9 10 258 4 295 1.23e-14 73.2
MS.gene016163.t1 MTR_4g119990 23.779 307 170 8 20 269 14 313 2.01e-14 72.8
MS.gene016163.t1 MTR_7g050590 30.973 113 74 1 37 149 2 110 4.28e-13 68.2
MS.gene016163.t1 MTR_3g061220 37.374 99 47 2 21 119 12 95 2.97e-12 62.4
MS.gene016163.t1 MTR_1g035440 30.702 114 78 1 10 122 4 117 4.13e-12 65.1
MS.gene016163.t1 MTR_1g050845 23.759 282 170 9 19 272 7 271 2.38e-11 64.3
MS.gene016163.t1 MTR_7g050640 28.431 102 73 0 20 121 12 113 7.87e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016163.t1 AT3G18990 30.000 340 147 7 21 273 6 341 9.87e-41 144
MS.gene016163.t1 AT3G18990 30.205 341 147 7 21 274 6 342 1.14e-40 144
MS.gene016163.t1 AT1G49475 37.302 126 74 2 4 129 21 141 7.05e-19 82.4
MS.gene016163.t1 AT4G01580 36.036 111 71 0 14 124 23 133 1.24e-18 82.0
MS.gene016163.t1 AT3G18960 36.036 111 71 0 14 124 23 133 1.48e-18 81.6
MS.gene016163.t1 AT3G18960 36.036 111 71 0 14 124 23 133 1.49e-18 82.0
MS.gene016163.t1 AT1G49480 33.083 133 79 4 147 273 98 226 5.46e-14 70.1
MS.gene016163.t1 AT1G49480 33.083 133 79 4 147 273 98 226 5.46e-14 70.1
MS.gene016163.t1 AT1G49480 33.083 133 79 4 147 273 98 226 5.46e-14 70.1
MS.gene016163.t1 AT3G18960 35.955 89 57 0 36 124 8 96 4.40e-13 66.2
MS.gene016163.t1 AT4G31690 23.108 251 163 9 12 257 7 232 3.76e-11 62.4

Find 53 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTCCGGATGGTTGTATT+TGG 0.168306 1.2:+6898908 MS.gene016163:CDS
TTGTTGGCCCTTTGAAATTT+AGG 0.191348 1.2:-6899536 None:intergenic
ATTGCTGTCCATGAGAATTT+TGG 0.193809 1.2:-6899451 None:intergenic
AATGAGTTTATCGCAAGATT+TGG 0.267691 1.2:+6898856 MS.gene016163:CDS
AAGTGAGAGCCGTGGGAAAA+AGG 0.303768 1.2:+6899176 MS.gene016163:CDS
TGATAGGAACATTTGGCTTC+AGG 0.319381 1.2:-6899424 None:intergenic
TTCCTTCATAATTGAAAGAA+AGG 0.357561 1.2:-6899023 None:intergenic
AATCTTGCGATAAACTCATT+TGG 0.373859 1.2:-6898853 None:intergenic
GGATGGTTGTATTTGGGAAA+TGG 0.374541 1.2:+6898915 MS.gene016163:CDS
TGTTGCTACAATTACTGTTC+CGG 0.380706 1.2:+6898894 MS.gene016163:CDS
TGTTCCGGATGGTTGTATTT+GGG 0.395192 1.2:+6898909 MS.gene016163:CDS
ATGAATGGGTGAGGGAAGTA+TGG 0.397613 1.2:-6897845 None:intergenic
TGGAGTTTGATAGGAACATT+TGG 0.399156 1.2:-6899431 None:intergenic
GAATACTATTCAATAGGATA+TGG 0.402689 1.2:+6898994 MS.gene016163:CDS
TACCTTTCTTTCAATTATGA+AGG 0.405245 1.2:+6899021 MS.gene016163:CDS
GTTTATTGGGTTGAATTCAT+TGG 0.425223 1.2:-6899244 None:intergenic
AAAGAAGCCGATTGTGCTAA+AGG 0.434126 1.2:+6899598 MS.gene016163:CDS
CATTTGCATTGATAATGATT+CGG 0.444491 1.2:-6899501 None:intergenic
ATCTCCACGCGACAGATTGT+TGG 0.449174 1.2:-6899552 None:intergenic
GAGAAGACCTGTCCGGTCAT+TGG 0.449255 1.2:+6897789 MS.gene016163:CDS
TTCATAGAATACTATTCAAT+AGG 0.452230 1.2:+6898988 MS.gene016163:CDS
ATTGTGACCTTTAGCACAAT+CGG 0.459095 1.2:-6899605 None:intergenic
CGAATCATTATCAATGCAAA+TGG 0.470308 1.2:+6899502 MS.gene016163:CDS
TACTATTTGAGTGGCATGAA+TGG 0.470527 1.2:-6897860 None:intergenic
AAATTCTCATGGACAGCAAT+GGG 0.472438 1.2:+6899454 MS.gene016163:CDS
AAACAAAGTATCCTAGTCCT+AGG 0.485163 1.2:+6899133 MS.gene016163:CDS
ACCTGTCCGGTCATTGGCGC+CGG 0.487744 1.2:+6897795 MS.gene016163:CDS
ATCAAACTCCAAAATTCTCA+TGG 0.489771 1.2:+6899443 MS.gene016163:CDS
CGTTCTCCGGCGCCAATGAC+CGG 0.495879 1.2:-6897801 None:intergenic
AGGATTTCCTAAATTTCAAA+GGG 0.499352 1.2:+6899529 MS.gene016163:CDS
AGTATCCTAGTCCTAGGAAA+AGG 0.513608 1.2:+6899139 MS.gene016163:CDS
TTCAAAACTCTAAGTACTAG+TGG 0.514800 1.2:+6899102 MS.gene016163:CDS
AAAATTCTCATGGACAGCAA+TGG 0.519153 1.2:+6899453 MS.gene016163:CDS
GAGGATTTCCTAAATTTCAA+AGG 0.521737 1.2:+6899528 MS.gene016163:CDS
ATGACCGGACAGGTCTTCTC+CGG 0.525069 1.2:-6897786 None:intergenic
ACTATTTGAGTGGCATGAAT+GGG 0.552409 1.2:-6897859 None:intergenic
ATTTCCCAAATACAACCATC+CGG 0.559087 1.2:-6898913 None:intergenic
TCCGGCGCCAATGACCGGAC+AGG 0.576662 1.2:-6897796 None:intergenic
AATCTGCAATGAAGCCTCGC+CGG 0.581440 1.2:+6897767 None:intergenic
ACTATTCAATAGGATATGGT+TGG 0.585720 1.2:+6898998 MS.gene016163:CDS
ACCGAAACTTACTATTTGAG+TGG 0.604521 1.2:-6897869 None:intergenic
CTCGCCGGAGAAGACCTGTC+CGG 0.607153 1.2:+6897782 MS.gene016163:CDS
TTGAGTGGCATGAATGGGTG+AGG 0.609441 1.2:-6897854 None:intergenic
TTAAAACAAGTGAGAGCCGT+GGG 0.615648 1.2:+6899169 MS.gene016163:CDS
TAGTCCTAGGAAAAGGTCCA+AGG 0.626880 1.2:+6899146 MS.gene016163:CDS
GCTACAATTACTGTTCCGGA+TGG 0.637015 1.2:+6898898 MS.gene016163:CDS
AGGGCCAACAATCTGTCGCG+TGG 0.637859 1.2:+6899548 MS.gene016163:CDS
AATTGCTAAGGCAAATCGAA+CGG 0.646365 1.2:+6899284 MS.gene016163:CDS
GTTAAAACAAGTGAGAGCCG+TGG 0.656728 1.2:+6899168 MS.gene016163:CDS
TGAGTGGCATGAATGGGTGA+GGG 0.662387 1.2:-6897853 None:intergenic
GAAATGGAACTGAAGAAATG+CGG 0.682734 1.2:+6898931 MS.gene016163:CDS
TTATCAATGCAAATGGCACG+AGG 0.695216 1.2:+6899509 MS.gene016163:CDS
CGGACAGGTCTTCTCCGGCG+AGG 0.701745 1.2:-6897781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAGAATTAATTGACATATT+TGG + chr1.2:6898397-6898416 MS.gene016163:intron 20.0%
!! TCTAATTTGAACTTAGAATT+CGG + chr1.2:6898456-6898475 MS.gene016163:intron 20.0%
!! TGAAATCAATAGTAAATTTG+TGG + chr1.2:6898601-6898620 MS.gene016163:intron 20.0%
!! TTCATAGAATACTATTCAAT+AGG + chr1.2:6898988-6899007 MS.gene016163:CDS 20.0%
!! TTTCAAATCTTTGATATGTT+TGG + chr1.2:6898064-6898083 MS.gene016163:intron 20.0%
!!! ACTATTGATTTCACTTTTAA+GGG - chr1.2:6898594-6898613 None:intergenic 20.0%
!!! CAATTTTTGAACGAAAAAAA+GGG - chr1.2:6899269-6899288 None:intergenic 20.0%
!!! TACTATTGATTTCACTTTTA+AGG - chr1.2:6898595-6898614 None:intergenic 20.0%
!!! TTTTGGTTTAAAGTAAATGT+TGG + chr1.2:6899327-6899346 MS.gene016163:intron 20.0%
! AACATACATGTGTATATTGT+TGG - chr1.2:6898337-6898356 None:intergenic 25.0%
! AACGAAAAAAAGGGTTTATT+GGG - chr1.2:6899260-6899279 None:intergenic 25.0%
! ACAATATACACATGTATGTT+TGG + chr1.2:6898337-6898356 MS.gene016163:intron 25.0%
! AGGATTTCCTAAATTTCAAA+GGG + chr1.2:6899529-6899548 MS.gene016163:CDS 25.0%
! ATCAAACATAAGCAATGTTT+AGG - chr1.2:6898490-6898509 None:intergenic 25.0%
! GAATACTATTCAATAGGATA+TGG + chr1.2:6898994-6899013 MS.gene016163:CDS 25.0%
! TACCTTTCTTTCAATTATGA+AGG + chr1.2:6899021-6899040 MS.gene016163:CDS 25.0%
! TTCCTTCATAATTGAAAGAA+AGG - chr1.2:6899026-6899045 None:intergenic 25.0%
!! ACGTTTTCTTTTGTAACAAA+TGG + chr1.2:6898959-6898978 MS.gene016163:CDS 25.0%
!! GCAATTTTTGAACGAAAAAA+AGG - chr1.2:6899270-6899289 None:intergenic 25.0%
!! TGTCTATTGTCTTAGATTTT+GGG + chr1.2:6898228-6898247 MS.gene016163:intron 25.0%
!! TTTTCGTTCAAAAATTGCTA+AGG + chr1.2:6899272-6899291 MS.gene016163:CDS 25.0%
!!! CATTTGCATTGATAATGATT+CGG - chr1.2:6899504-6899523 None:intergenic 25.0%
!!! TTCTATCTTTCTTTTGAGTA+TGG + chr1.2:6897892-6897911 MS.gene016163:intron 25.0%
AATCTTGCGATAAACTCATT+TGG - chr1.2:6898856-6898875 None:intergenic 30.0%
AATGAGTTTATCGCAAGATT+TGG + chr1.2:6898856-6898875 MS.gene016163:CDS 30.0%
AATTTGAACTTAGAATTCGG+AGG + chr1.2:6898459-6898478 MS.gene016163:intron 30.0%
ACCAAACTTCAAAAGAGAAT+TGG - chr1.2:6898782-6898801 None:intergenic 30.0%
ACTATTCAATAGGATATGGT+TGG + chr1.2:6898998-6899017 MS.gene016163:CDS 30.0%
ATCAAACTCCAAAATTCTCA+TGG + chr1.2:6899443-6899462 MS.gene016163:CDS 30.0%
ATCACCTTAGATTCAACATA+GGG - chr1.2:6898519-6898538 None:intergenic 30.0%
CGAATCATTATCAATGCAAA+TGG + chr1.2:6899502-6899521 MS.gene016163:CDS 30.0%
GAAAGAGAGATCAATTTAAG+TGG - chr1.2:6899366-6899385 None:intergenic 30.0%
GAACGAAAAAAAGGGTTTAT+TGG - chr1.2:6899261-6899280 None:intergenic 30.0%
GAGGATTTCCTAAATTTCAA+AGG + chr1.2:6899528-6899547 MS.gene016163:CDS 30.0%
GTGTATATTGTTGGACAATA+AGG - chr1.2:6898328-6898347 None:intergenic 30.0%
TTCAAAACTCTAAGTACTAG+TGG + chr1.2:6899102-6899121 MS.gene016163:CDS 30.0%
TTGTGGCTAAAAATCATGTT+TGG + chr1.2:6898618-6898637 MS.gene016163:intron 30.0%
! AGTTTGGTCTTTAGTATATC+AGG + chr1.2:6898794-6898813 MS.gene016163:intron 30.0%
! CTAAAAATCATGTTTGGAGT+AGG + chr1.2:6898624-6898643 MS.gene016163:intron 30.0%
! GTGTCTATTGTCTTAGATTT+TGG + chr1.2:6898227-6898246 MS.gene016163:intron 30.0%
!! GTTTATTGGGTTGAATTCAT+TGG - chr1.2:6899247-6899266 None:intergenic 30.0%
!! TTTTGATTCACTTTTGTGAG+TGG - chr1.2:6898744-6898763 None:intergenic 30.0%
!!! AAATGTTTTGATACGTTCTC+CGG - chr1.2:6897817-6897836 None:intergenic 30.0%
!!! ACCAATTCTCTTTTGAAGTT+TGG + chr1.2:6898778-6898797 MS.gene016163:intron 30.0%
!!! CTAGTACTTAGAGTTTTGAA+CGG - chr1.2:6899102-6899121 None:intergenic 30.0%
!!! GGATTATACTTTGGAGTTTT+TGG + chr1.2:6899310-6899329 MS.gene016163:intron 30.0%
!!! TGAGAATTTTGGAGTTTGAT+AGG - chr1.2:6899443-6899462 None:intergenic 30.0%
AAAATTCTCATGGACAGCAA+TGG + chr1.2:6899453-6899472 MS.gene016163:CDS 35.0%
AAACAACTACACAAGTGAGT+TGG - chr1.2:6898268-6898287 None:intergenic 35.0%
AAATTCTCATGGACAGCAAT+GGG + chr1.2:6899454-6899473 MS.gene016163:CDS 35.0%
AATTGCTAAGGCAAATCGAA+CGG + chr1.2:6899284-6899303 MS.gene016163:CDS 35.0%
ACCGAAACTTACTATTTGAG+TGG - chr1.2:6897872-6897891 None:intergenic 35.0%
ACTATGTTGGATCATCACAT+TGG - chr1.2:6898296-6898315 None:intergenic 35.0%
ACTATTTGAGTGGCATGAAT+GGG - chr1.2:6897862-6897881 None:intergenic 35.0%
ATTGTGACCTTTAGCACAAT+CGG - chr1.2:6899608-6899627 None:intergenic 35.0%
ATTTCCCAAATACAACCATC+CGG - chr1.2:6898916-6898935 None:intergenic 35.0%
CATTCCCTATGTTGAATCTA+AGG + chr1.2:6898512-6898531 MS.gene016163:intron 35.0%
GAAATGGAACTGAAGAAATG+CGG + chr1.2:6898931-6898950 MS.gene016163:CDS 35.0%
GATCACCTTAGATTCAACAT+AGG - chr1.2:6898520-6898539 None:intergenic 35.0%
GCCACTCAAATAGTAAGTTT+CGG + chr1.2:6897868-6897887 MS.gene016163:intron 35.0%
TACTATTTGAGTGGCATGAA+TGG - chr1.2:6897863-6897882 None:intergenic 35.0%
TGGAGTTTGATAGGAACATT+TGG - chr1.2:6899434-6899453 None:intergenic 35.0%
TGTACACACTTAGTTGAATC+TGG + chr1.2:6898545-6898564 MS.gene016163:intron 35.0%
TGTTGCTACAATTACTGTTC+CGG + chr1.2:6898894-6898913 MS.gene016163:CDS 35.0%
TTCAGTACTAACTCCATTGA+AGG + chr1.2:6898000-6898019 MS.gene016163:intron 35.0%
! AAACAAAGTATCCTAGTCCT+AGG + chr1.2:6899133-6899152 MS.gene016163:CDS 35.0%
! ATTGCTGTCCATGAGAATTT+TGG - chr1.2:6899454-6899473 None:intergenic 35.0%
! TGACATATTTGGAATGTGCT+CGG + chr1.2:6898408-6898427 MS.gene016163:intron 35.0%
! TGCTTCTAAAAAAGCAGAGA+AGG + chr1.2:6899218-6899237 MS.gene016163:CDS 35.0%
! TTGGTCTTTAGTATATCAGG+CGG + chr1.2:6898797-6898816 MS.gene016163:intron 35.0%
!! TGTTTTTGTCCTTTTTCCCA+CGG - chr1.2:6899188-6899207 None:intergenic 35.0%
!! TTAGATTTTGGGTGAACATG+TGG + chr1.2:6898239-6898258 MS.gene016163:intron 35.0%
!! TTGTTGGCCCTTTGAAATTT+AGG - chr1.2:6899539-6899558 None:intergenic 35.0%
!!! GGACTAGGATACTTTGTTTT+TGG - chr1.2:6899132-6899151 None:intergenic 35.0%
AAAGAAGCCGATTGTGCTAA+AGG + chr1.2:6899598-6899617 MS.gene016163:CDS 40.0%
AGGTCATCACTCTTTCTGTT+TGG + chr1.2:6898020-6898039 MS.gene016163:intron 40.0%
AGTATCCTAGTCCTAGGAAA+AGG + chr1.2:6899139-6899158 MS.gene016163:CDS 40.0%
ATAATCATGCTAGCTAGCTG+TGG + chr1.2:6898105-6898124 MS.gene016163:intron 40.0%
GAAAGAGTGATGACCTTCAA+TGG - chr1.2:6898016-6898035 None:intergenic 40.0%
GAACGGTGAGGATTATACTT+TGG + chr1.2:6899301-6899320 MS.gene016163:intron 40.0%
GGATGGTTGTATTTGGGAAA+TGG + chr1.2:6898915-6898934 MS.gene016163:CDS 40.0%
TGTGATGATCCAACATAGTG+TGG + chr1.2:6898297-6898316 MS.gene016163:intron 40.0%
TGTTCCGGATGGTTGTATTT+GGG + chr1.2:6898909-6898928 MS.gene016163:CDS 40.0%
TTAAAACAAGTGAGAGCCGT+GGG + chr1.2:6899169-6899188 MS.gene016163:CDS 40.0%
TTATCAATGCAAATGGCACG+AGG + chr1.2:6899509-6899528 MS.gene016163:CDS 40.0%
! GACATATTTGGAATGTGCTC+GGG + chr1.2:6898409-6898428 MS.gene016163:intron 40.0%
! TGATAGGAACATTTGGCTTC+AGG - chr1.2:6899427-6899446 None:intergenic 40.0%
! TTAACCTTGGACCTTTTCCT+AGG - chr1.2:6899153-6899172 None:intergenic 40.0%
!!! GCTCTCACTTGTTTTAACCT+TGG - chr1.2:6899166-6899185 None:intergenic 40.0%
AAGGAGAAGCCACACTATGT+TGG - chr1.2:6898309-6898328 None:intergenic 45.0%
ACATGCACTCAATGCATGCA+TGG - chr1.2:6897973-6897992 None:intergenic 45.0%
ATGAATGGGTGAGGGAAGTA+TGG - chr1.2:6897848-6897867 None:intergenic 45.0%
CTGTTCCGGATGGTTGTATT+TGG + chr1.2:6898908-6898927 MS.gene016163:CDS 45.0%
GCTACAATTACTGTTCCGGA+TGG + chr1.2:6898898-6898917 MS.gene016163:CDS 45.0%
GTTAAAACAAGTGAGAGCCG+TGG + chr1.2:6899168-6899187 MS.gene016163:CDS 45.0%
TAGTCCTAGGAAAAGGTCCA+AGG + chr1.2:6899146-6899165 MS.gene016163:CDS 45.0%
! TTGGACCTTTTCCTAGGACT+AGG - chr1.2:6899147-6899166 None:intergenic 45.0%
AAGTGAGAGCCGTGGGAAAA+AGG + chr1.2:6899176-6899195 MS.gene016163:CDS 50.0%
ATCTCCACGCGACAGATTGT+TGG - chr1.2:6899555-6899574 None:intergenic 50.0%
ATGCTAGCTAGCTGTGGTTC+TGG + chr1.2:6898111-6898130 MS.gene016163:intron 50.0%
CTAAGGCAAATCGAACGGTG+AGG + chr1.2:6899289-6899308 MS.gene016163:intron 50.0%
TGAGTGGCATGAATGGGTGA+GGG - chr1.2:6897856-6897875 None:intergenic 50.0%
TTGAGTGGCATGAATGGGTG+AGG - chr1.2:6897857-6897876 None:intergenic 50.0%
ATGACCGGACAGGTCTTCTC+CGG - chr1.2:6897789-6897808 None:intergenic 55.0%
GAGAAGACCTGTCCGGTCAT+TGG + chr1.2:6897789-6897808 MS.gene016163:CDS 55.0%
AGGGCCAACAATCTGTCGCG+TGG + chr1.2:6899548-6899567 MS.gene016163:CDS 60.0%
ACCTGTCCGGTCATTGGCGC+CGG + chr1.2:6897795-6897814 MS.gene016163:CDS 65.0%
CGTTCTCCGGCGCCAATGAC+CGG - chr1.2:6897804-6897823 None:intergenic 65.0%
CTCGCCGGAGAAGACCTGTC+CGG + chr1.2:6897782-6897801 MS.gene016163:CDS 65.0%
CGGACAGGTCTTCTCCGGCG+AGG - chr1.2:6897784-6897803 None:intergenic 70.0%
TCCGGCGCCAATGACCGGAC+AGG - chr1.2:6897799-6897818 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 6897775 6899655 6897775 ID=MS.gene016163
chr1.2 mRNA 6897775 6899655 6897775 ID=MS.gene016163.t1;Parent=MS.gene016163
chr1.2 exon 6897775 6897879 6897775 ID=MS.gene016163.t1.exon1;Parent=MS.gene016163.t1
chr1.2 CDS 6897775 6897879 6897775 ID=cds.MS.gene016163.t1;Parent=MS.gene016163.t1
chr1.2 exon 6898847 6899305 6898847 ID=MS.gene016163.t1.exon2;Parent=MS.gene016163.t1
chr1.2 CDS 6898847 6899305 6898847 ID=cds.MS.gene016163.t1;Parent=MS.gene016163.t1
chr1.2 exon 6899395 6899655 6899395 ID=MS.gene016163.t1.exon3;Parent=MS.gene016163.t1
chr1.2 CDS 6899395 6899655 6899395 ID=cds.MS.gene016163.t1;Parent=MS.gene016163.t1
Gene Sequence

>MS.gene016163

ATGAAGCCTCGCCGGAGAAGACCTGTCCGGTCATTGGCGCCGGAGAACGTATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATGCCACTCAAATAGTAAGTTTCGGTTTCTATCTTTCTTTTGAGTATGGTCTTTGTAGCTAAGTTGACGACTCTTTAATTTTATCGCTTGTTTTGTACTCTTATCCATGCATGCATTGAGTGCATGTTTCAACATTCAGTACTAACTCCATTGAAGGTCATCACTCTTTCTGTTTGGTTCTAAGCTTGTAATAATTGATTTCAAATCTTTGATATGTTTGGTATCACATTAAGTTTGTCATAATCATGCTAGCTAGCTGTGGTTCTGGCACAACTATTGTGATGCAAAATATATGTTATGATATGTCGAGTGTGAGTTAAAGTTTCACATTAGATGAAAGAGTTGATGTTGAACAACATAAGTGTCTATTGTCTTAGATTTTGGGTGAACATGTGGTTTCCAACTCACTTGTGTAGTTGTTTTTAATCCAATGTGATGATCCAACATAGTGTGGCTTCTCCTTATTGTCCAACAATATACACATGTATGTTTGGTTTTACTTTTGCACAAGACAAAATTGATTTTAGAGATGTAGAATTAATTGACATATTTGGAATGTGCTCGGGTTTGATTTTGTCTTCATAATTGATTCTAATTTGAACTTAGAATTCGGAGGTTTTGCCTAAACATTGCTTATGTTTGATTGCATTCCCTATGTTGAATCTAAGGTGATCTACAGTGTACACACTTAGTTGAATCTGGAATGTACTTATGTATGATTTATTCCCTTAAAAGTGAAATCAATAGTAAATTTGTGGCTAAAAATCATGTTTGGAGTAGGAAACTTCAAATCTAAATTTCAAATTATAAATTATTAGTGTCAAAAGCAATTCTAAAAGTATCAAAATTATTTTATGCATCTTAAATCACTTTTTCCACTCACAAAAGTGAATCAAAATATGCACTAGCTGTACCAATTCTCTTTTGAAGTTTGGTCTTTAGTATATCAGGCGGTGTGTTATTTATCGTTTATCAATGCAGAGAATTCCAAATGAGTTTATCGCAAGATTTGGAAATGAACTCAAGAATGTTGCTACAATTACTGTTCCGGATGGTTGTATTTGGGAAATGGAACTGAAGAAATGCGGCAATGACGTTTTCTTTTGTAACAAATGGCAAGAGTTCATAGAATACTATTCAATAGGATATGGTTGGTACCTTTCTTTCAATTATGAAGGAAATTCAAAGTTTAGTGTTACTATAATTGATGTAACTTCTGTTGAGATTTGCTATCCGTTCAAAACTCTAAGTACTAGTGGAGAACCAAAAACAAAGTATCCTAGTCCTAGGAAAAGGTCCAAGGTTAAAACAAGTGAGAGCCGTGGGAAAAAGGACAAAAACATGTCTACGCGTGCTTCTAAAAAAGCAGAGAAGGCTGCCAATGAATTCAACCCAATAAACCCTTTTTTTCGTTCAAAAATTGCTAAGGCAAATCGAACGGTGAGGATTATACTTTGGAGTTTTTGGTTTAAAGTAAATGTTGGCTTATTTATGTTGCCACTTAAATTGATCTCTCTTTCATTTTGTAGAGTGTTACTTCTAAATTTGCTCAAAAGTACCTGAAGCCAAATGTTCCTATCAAACTCCAAAATTCTCATGGACAGCAATGGGAAGTTTCTTGTGTATTTTGTAATGCCGAATCATTATCAATGCAAATGGCACGAGGATTTCCTAAATTTCAAAGGGCCAACAATCTGTCGCGTGGAGATTATTGTGCGTTTGAGCTGATAAAAAAGAAGCCGATTGTGCTAAAGGTCACAATGTTTCGTGTAGTTGATTATCTTGATTAA
Protein sequence

>MS.gene016163.t1

MKPRRRRPVRSLAPENVSKHFMKAILPSPIHATQIRIPNEFIARFGNELKNVATITVPDGCIWEMELKKCGNDVFFCNKWQEFIEYYSIGYGWYLSFNYEGNSKFSVTIIDVTSVEICYPFKTLSTSGEPKTKYPSPRKRSKVKTSESRGKKDKNMSTRASKKAEKAANEFNPINPFFRSKIAKANRTSVTSKFAQKYLKPNVPIKLQNSHGQQWEVSCVFCNAESLSMQMARGFPKFQRANNLSRGDYCAFELIKKKPIVLKVTMFRVVDYLD