AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016287

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016287.t1 MTR_8g046350 92.169 166 10 1 1 166 1 163 1.05e-108 307
MS.gene016287.t1 MTR_8g051580 62.712 177 63 1 1 174 1 177 1.95e-75 224
MS.gene016287.t1 MTR_1g047550 57.714 175 71 1 1 172 1 175 3.43e-68 205
MS.gene016287.t1 MTR_4g131030 53.723 188 67 1 1 168 1 188 1.47e-66 202
MS.gene016287.t1 MTR_8g079502 58.683 167 66 1 1 164 1 167 3.59e-65 197
MS.gene016287.t1 MTR_1g063160 54.286 175 77 1 1 172 1 175 1.65e-62 191
MS.gene016287.t1 MTR_1g054265 52.976 168 76 1 1 165 1 168 1.74e-58 180
MS.gene016287.t1 MTR_4g094632 38.554 166 83 5 1 161 1 152 4.85e-31 110
MS.gene016287.t1 MTR_1g106070 44.737 114 56 2 2 108 9 122 1.55e-26 99.8
MS.gene016287.t1 MTR_3g052870 39.456 147 68 3 2 141 9 141 1.72e-26 100
MS.gene016287.t1 MTR_3g052920 51.546 97 42 2 2 93 9 105 2.40e-26 100
MS.gene016287.t1 MTR_1g105920 45.614 114 55 2 2 108 9 122 3.95e-26 100
MS.gene016287.t1 MTR_3g080940 45.378 119 57 3 1 114 8 123 5.77e-26 99.0
MS.gene016287.t1 MTR_5g045560 53.846 78 36 0 1 78 8 85 5.86e-25 97.1
MS.gene016287.t1 MTR_5g055100 36.196 163 93 4 2 159 9 165 6.65e-25 96.7
MS.gene016287.t1 MTR_1g105910 43.590 117 59 2 2 111 9 125 1.32e-24 95.9
MS.gene016287.t1 MTR_2g030740 43.590 117 59 2 2 111 9 125 2.07e-24 95.5
MS.gene016287.t1 MTR_1g077360 57.143 77 33 0 2 78 9 85 2.64e-24 95.1
MS.gene016287.t1 MTR_1g108580 38.095 147 65 2 2 122 9 155 5.45e-24 94.4
MS.gene016287.t1 MTR_8g043650 45.545 101 50 1 2 97 9 109 8.36e-24 94.0
MS.gene016287.t1 MTR_3g030770 42.149 121 65 2 2 117 9 129 9.17e-24 93.6
MS.gene016287.t1 MTR_1g012570 37.423 163 87 3 2 149 9 171 9.79e-24 93.6
MS.gene016287.t1 MTR_1g075600 55.844 77 34 0 2 78 9 85 1.70e-23 93.2
MS.gene016287.t1 MTR_2g105290 35.762 151 88 4 1 150 11 153 1.73e-23 91.7
MS.gene016287.t1 MTR_1g108510 45.045 111 55 3 2 107 9 118 1.77e-23 92.8
MS.gene016287.t1 MTR_4g094638 51.316 76 37 0 1 76 1 76 1.86e-23 91.7
MS.gene016287.t1 MTR_2g093190 37.415 147 66 1 2 122 9 155 2.33e-23 92.4
MS.gene016287.t1 MTR_0121s0080 35.220 159 88 2 2 145 9 167 2.59e-23 92.4
MS.gene016287.t1 MTR_5g053390 53.247 77 36 0 2 78 9 85 1.16e-22 90.9
MS.gene016287.t1 MTR_7g028448 37.879 132 66 3 17 135 27 155 1.40e-22 89.0
MS.gene016287.t1 MTR_4g036915 37.879 132 66 3 17 135 27 155 1.40e-22 89.0
MS.gene016287.t1 MTR_3g030780 51.948 77 37 0 2 78 9 85 2.78e-22 87.0
MS.gene016287.t1 MTR_8g086290 37.226 137 78 4 2 136 12 142 3.35e-22 88.2
MS.gene016287.t1 MTR_2g085280 53.247 77 36 0 2 78 9 85 3.44e-22 89.7
MS.gene016287.t1 MTR_2g085250 53.247 77 36 0 2 78 9 85 3.62e-22 89.7
MS.gene016287.t1 MTR_0121s0100 41.441 111 59 2 2 107 9 118 1.42e-21 85.5
MS.gene016287.t1 MTR_1g105905 41.593 113 57 2 18 125 8 116 1.17e-20 85.1
MS.gene016287.t1 MTR_5g021270 53.125 64 30 0 1 64 1 64 1.93e-19 82.4
MS.gene016287.t1 MTR_5g021270 53.125 64 30 0 1 64 1 64 1.98e-19 82.4
MS.gene016287.t1 MTR_0003s0590 52.174 69 33 0 1 69 1 69 4.33e-19 82.0
MS.gene016287.t1 MTR_5g066180 48.611 72 37 0 1 72 1 72 3.92e-18 78.6
MS.gene016287.t1 MTR_7g062350 55.556 63 28 0 16 78 35 97 7.06e-18 78.6
MS.gene016287.t1 MTR_3g452380 31.875 160 105 2 1 159 16 172 2.06e-17 77.0
MS.gene016287.t1 MTR_4g127140 47.436 78 41 0 1 78 11 88 2.07e-17 75.9
MS.gene016287.t1 MTR_8g087860 34.862 109 71 0 1 109 17 125 3.34e-17 76.6
MS.gene016287.t1 MTR_5g066960 55.000 60 27 0 1 60 1 60 6.95e-17 71.2
MS.gene016287.t1 MTR_1g053070 44.444 81 45 0 1 81 1 81 7.41e-17 75.9
MS.gene016287.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 9.10e-17 75.5
MS.gene016287.t1 MTR_4g093970 38.462 117 63 2 1 108 27 143 1.05e-16 75.1
MS.gene016287.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.10e-16 74.7
MS.gene016287.t1 MTR_8g033270 46.377 69 37 0 1 69 1 69 2.09e-16 74.7
MS.gene016287.t1 MTR_2g009890 40.230 87 51 1 1 87 1 86 2.28e-16 74.7
MS.gene016287.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 2.85e-16 73.6
MS.gene016287.t1 MTR_2g017865 33.028 109 73 0 1 109 16 124 3.81e-16 73.9
MS.gene016287.t1 MTR_3g067910 50.820 61 30 0 18 78 6 66 4.97e-16 70.5
MS.gene016287.t1 MTR_8g033220 36.893 103 62 2 1 101 1 102 6.23e-16 72.8
MS.gene016287.t1 MTR_8g033220 36.893 103 62 2 1 101 1 102 6.83e-16 72.8
MS.gene016287.t1 MTR_3g067875 58.333 48 20 0 18 65 8 55 6.95e-16 68.9
MS.gene016287.t1 MTR_3g109930 33.898 118 74 2 17 133 17 131 7.49e-16 71.6
MS.gene016287.t1 MTR_3g113030 48.611 72 35 1 1 72 1 70 9.47e-16 72.4
MS.gene016287.t1 MTR_7g075870 33.663 101 67 0 1 101 1 101 1.61e-15 71.6
MS.gene016287.t1 MTR_5g032150 42.857 84 47 1 1 84 1 83 1.70e-15 71.6
MS.gene016287.t1 MTR_1g108500 57.377 61 23 1 4 64 102 159 1.87e-15 72.8
MS.gene016287.t1 MTR_5g032520 42.857 84 47 1 1 84 1 83 2.21e-15 71.2
MS.gene016287.t1 MTR_1g038300 46.479 71 36 1 1 69 1 71 4.69e-15 70.5
MS.gene016287.t1 MTR_7g075870 51.724 58 28 0 1 58 1 58 6.04e-15 70.1
MS.gene016287.t1 MTR_4g102530 43.478 69 39 0 1 69 1 69 7.80e-15 69.7
MS.gene016287.t1 MTR_4g093030 54.386 57 26 0 1 57 1 57 1.29e-14 68.2
MS.gene016287.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.43e-14 68.6
MS.gene016287.t1 MTR_2g461710 49.123 57 29 0 1 57 1 57 1.52e-14 65.1
MS.gene016287.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.62e-14 68.6
MS.gene016287.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.71e-14 68.2
MS.gene016287.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.74e-14 68.2
MS.gene016287.t1 MTR_1g101970 43.662 71 40 0 1 71 1 71 1.94e-14 68.2
MS.gene016287.t1 MTR_7g016600 50.877 57 28 0 1 57 1 57 2.17e-14 68.9
MS.gene016287.t1 MTR_4g084740 46.479 71 37 1 1 70 1 71 2.50e-14 69.7
MS.gene016287.t1 MTR_5g046870 50.877 57 28 0 1 57 1 57 3.27e-14 65.9
MS.gene016287.t1 MTR_1g029670 35.345 116 58 3 1 114 1 101 3.46e-14 67.4
MS.gene016287.t1 MTR_4g109830 36.170 94 47 2 1 81 1 94 4.44e-14 68.2
MS.gene016287.t1 MTR_8g066260 41.667 72 39 1 1 72 1 69 6.89e-14 67.4
MS.gene016287.t1 MTR_3g084980 52.632 57 27 0 1 57 1 57 7.01e-14 67.8
MS.gene016287.t1 MTR_6g015975 50.877 57 28 0 1 57 1 57 1.05e-13 67.4
MS.gene016287.t1 MTR_8g097090 50.877 57 28 0 1 57 1 57 1.07e-13 67.0
MS.gene016287.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 1.14e-13 65.9
MS.gene016287.t1 MTR_5g046790 45.614 57 31 0 1 57 1 57 1.38e-13 66.2
MS.gene016287.t1 MTR_7g016630 38.356 73 44 1 1 72 1 73 1.42e-13 67.0
MS.gene016287.t1 MTR_4g109810 49.123 57 29 0 1 57 1 57 1.69e-13 66.6
MS.gene016287.t1 MTR_3g102570 42.254 71 40 1 1 70 1 71 1.95e-13 67.0
MS.gene016287.t1 MTR_8g022970 36.893 103 54 2 20 122 36 127 2.62e-13 65.1
MS.gene016287.t1 MTR_7g075850 52.632 57 27 0 1 57 1 57 3.37e-13 65.9
MS.gene016287.t1 MTR_3g437790 45.902 61 32 1 19 78 30 90 1.27e-12 63.2
MS.gene016287.t1 MTR_6g464720 40.278 72 42 1 1 71 1 72 1.29e-12 64.3
MS.gene016287.t1 MTR_1g041615 60.870 46 18 0 13 58 17 62 2.10e-12 61.6
MS.gene016287.t1 MTR_5g041650 50.000 54 27 0 1 54 38 91 3.07e-12 63.9
MS.gene016287.t1 MTR_3g067870 52.083 48 23 0 18 65 92 139 3.89e-12 61.2
MS.gene016287.t1 MTR_4g051538 31.250 96 54 2 19 108 26 115 1.39e-11 61.2
MS.gene016287.t1 MTR_4g108720 30.075 133 66 2 1 106 1 133 1.90e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016287.t1 AT2G34440 38.596 171 92 2 1 158 1 171 1.31e-35 122
MS.gene016287.t1 AT3G66656 48.819 127 59 2 1 121 1 127 1.15e-31 112
MS.gene016287.t1 AT2G24840 43.548 124 59 3 1 117 62 181 3.63e-28 105
MS.gene016287.t1 AT5G60440 43.662 142 69 4 2 136 7 144 2.33e-27 104
MS.gene016287.t1 AT4G36590 38.554 166 77 5 2 157 7 157 9.27e-25 96.7
MS.gene016287.t1 AT1G01530 41.007 139 75 2 1 136 6 140 3.78e-24 95.1
MS.gene016287.t1 AT1G65360 38.621 145 70 4 1 136 6 140 2.59e-22 89.7
MS.gene016287.t1 AT1G72350 40.496 121 65 3 2 122 43 156 2.29e-20 84.7
MS.gene016287.t1 AT1G47760 31.056 161 101 3 1 154 1 158 8.16e-20 82.4
MS.gene016287.t1 AT3G61120 44.578 83 44 1 1 81 1 83 2.20e-19 82.4
MS.gene016287.t1 AT5G65070 39.496 119 68 4 1 116 1 118 2.65e-19 80.1
MS.gene016287.t1 AT4G24540 40.230 87 52 0 1 87 1 87 5.82e-19 80.9
MS.gene016287.t1 AT5G65070 37.857 140 80 5 1 134 1 139 6.80e-19 80.1
MS.gene016287.t1 AT5G13790 37.705 122 54 1 1 122 1 100 1.34e-18 80.9
MS.gene016287.t1 AT5G13790 40.206 97 58 0 1 97 1 97 2.37e-18 80.1
MS.gene016287.t1 AT3G57390 50.725 69 34 0 1 69 1 69 5.34e-18 78.6
MS.gene016287.t1 AT1G28460 46.377 69 37 0 2 70 8 76 6.26e-18 77.4
MS.gene016287.t1 AT1G29962 45.833 72 39 0 2 73 8 79 6.66e-18 77.4
MS.gene016287.t1 AT3G57390 50.725 69 34 0 1 69 1 69 8.94e-18 78.6
MS.gene016287.t1 AT3G57230 46.377 69 37 0 1 69 1 69 1.18e-17 75.5
MS.gene016287.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.78e-17 75.9
MS.gene016287.t1 AT3G57230 46.377 69 37 0 1 69 1 69 2.42e-17 77.0
MS.gene016287.t1 AT3G57230 46.377 69 37 0 1 69 1 69 2.42e-17 77.0
MS.gene016287.t1 AT4G09960 30.065 153 93 4 1 147 2 146 2.66e-17 76.6
MS.gene016287.t1 AT2G22540 39.423 104 61 2 1 103 1 103 2.68e-17 76.6
MS.gene016287.t1 AT2G22540 39.423 104 61 2 1 103 1 103 2.68e-17 76.6
MS.gene016287.t1 AT4G09960 30.065 153 93 4 1 147 1 145 2.70e-17 76.6
MS.gene016287.t1 AT5G65080 35.915 142 85 3 1 136 8 149 3.76e-17 75.5
MS.gene016287.t1 AT4G09960 38.462 91 51 1 1 91 1 86 3.96e-17 75.9
MS.gene016287.t1 AT4G09960 30.065 153 93 4 1 147 11 155 4.50e-17 76.3
MS.gene016287.t1 AT2G45650 46.377 69 37 0 1 69 1 69 4.59e-17 76.3
MS.gene016287.t1 AT5G65070 40.426 94 54 1 1 94 1 92 5.23e-17 75.9
MS.gene016287.t1 AT4G09960 30.065 153 93 4 1 147 27 171 5.96e-17 76.3
MS.gene016287.t1 AT5G65070 40.426 94 54 1 1 94 1 92 6.20e-17 75.1
MS.gene016287.t1 AT2G22630 49.275 69 35 0 1 69 1 69 6.57e-17 75.5
MS.gene016287.t1 AT2G22630 49.275 69 35 0 1 69 1 69 6.57e-17 75.5
MS.gene016287.t1 AT2G45660 34.286 105 69 0 1 105 1 105 9.13e-17 73.6
MS.gene016287.t1 AT3G04100 43.421 76 40 1 2 74 14 89 1.00e-16 74.7
MS.gene016287.t1 AT4G09960 38.462 91 51 1 1 91 96 181 1.16e-16 76.3
MS.gene016287.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.57e-16 73.2
MS.gene016287.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.58e-16 74.3
MS.gene016287.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.58e-16 74.3
MS.gene016287.t1 AT1G17310 58.621 58 22 1 17 74 63 118 1.73e-16 74.3
MS.gene016287.t1 AT1G17310 58.621 58 22 1 17 74 74 129 2.20e-16 74.3
MS.gene016287.t1 AT5G10140 53.448 58 27 0 1 58 1 58 2.85e-16 73.2
MS.gene016287.t1 AT4G37940 46.377 69 37 0 1 69 1 69 2.97e-16 73.9
MS.gene016287.t1 AT5G10140 54.386 57 26 0 1 57 1 57 2.99e-16 72.8
MS.gene016287.t1 AT2G45660 34.286 105 69 0 1 105 1 105 3.07e-16 73.6
MS.gene016287.t1 AT5G65070 45.070 71 37 1 1 69 1 71 3.23e-16 73.9
MS.gene016287.t1 AT3G54340 30.108 186 101 5 1 164 1 179 3.50e-16 73.6
MS.gene016287.t1 AT5G10140 54.386 57 26 0 1 57 1 57 3.51e-16 73.2
MS.gene016287.t1 AT5G51870 46.377 69 37 0 1 69 1 69 3.97e-16 72.4
MS.gene016287.t1 AT4G37940 46.377 69 37 0 1 69 1 69 4.11e-16 73.2
MS.gene016287.t1 AT5G51870 46.377 69 37 0 1 69 1 69 4.18e-16 73.2
MS.gene016287.t1 AT5G51870 46.377 69 37 0 1 69 24 92 6.52e-16 72.4
MS.gene016287.t1 AT5G51870 46.377 69 37 0 1 69 1 69 7.74e-16 72.4
MS.gene016287.t1 AT4G37940 43.210 81 42 1 1 77 1 81 8.27e-16 71.6
MS.gene016287.t1 AT5G51870 46.377 69 37 0 1 69 11 79 1.24e-15 72.0
MS.gene016287.t1 AT2G22540 56.364 55 24 0 1 55 1 55 1.51e-15 72.0
MS.gene016287.t1 AT2G42830 38.298 94 53 2 1 94 16 104 1.66e-15 72.0
MS.gene016287.t1 AT2G42830 38.298 94 53 2 1 94 16 104 1.71e-15 72.0
MS.gene016287.t1 AT5G51860 46.377 69 37 0 1 69 1 69 1.87e-15 71.2
MS.gene016287.t1 AT3G58780 38.298 94 53 2 1 94 16 104 1.97e-15 72.0
MS.gene016287.t1 AT5G65060 56.364 55 24 0 1 55 1 55 2.10e-15 70.9
MS.gene016287.t1 AT3G58780 38.298 94 53 2 1 94 22 110 2.15e-15 72.0
MS.gene016287.t1 AT5G51860 46.377 69 37 0 1 69 1 69 2.22e-15 71.2
MS.gene016287.t1 AT4G11880 53.448 58 27 0 1 58 1 58 2.25e-15 70.5
MS.gene016287.t1 AT4G11880 53.448 58 27 0 1 58 1 58 2.25e-15 70.5
MS.gene016287.t1 AT5G65050 54.545 55 25 0 1 55 1 55 2.67e-15 70.1
MS.gene016287.t1 AT5G20240 49.206 63 32 0 1 63 1 63 2.70e-15 69.7
MS.gene016287.t1 AT3G58780 40.698 86 38 1 1 73 16 101 3.36e-15 71.2
MS.gene016287.t1 AT1G22130 49.296 71 35 1 1 70 1 71 3.43e-15 72.4
MS.gene016287.t1 AT5G65060 56.364 55 24 0 1 55 1 55 3.53e-15 70.5
MS.gene016287.t1 AT3G58780 38.298 94 53 2 1 94 16 104 3.82e-15 71.6
MS.gene016287.t1 AT5G65060 56.364 55 24 0 1 55 1 55 3.84e-15 70.1
MS.gene016287.t1 AT5G23260 59.649 57 23 0 1 57 1 57 5.16e-15 70.9
MS.gene016287.t1 AT5G23260 59.649 57 23 0 1 57 17 73 5.30e-15 70.9
MS.gene016287.t1 AT2G14210 53.448 58 27 0 1 58 1 58 5.32e-15 70.5
MS.gene016287.t1 AT5G23260 59.649 57 23 0 1 57 17 73 5.60e-15 70.9
MS.gene016287.t1 AT1G71692 50.000 62 31 0 1 62 1 62 5.82e-15 70.1
MS.gene016287.t1 AT5G20240 49.206 63 32 0 1 63 1 63 6.03e-15 70.1
MS.gene016287.t1 AT5G23260 59.649 57 23 0 1 57 1 57 6.04e-15 70.5
MS.gene016287.t1 AT5G62165 40.000 75 45 0 1 75 1 75 6.43e-15 68.9
MS.gene016287.t1 AT5G62165 40.000 75 45 0 1 75 1 75 6.43e-15 68.9
MS.gene016287.t1 AT5G62165 40.000 75 45 0 1 75 1 75 6.43e-15 68.9
MS.gene016287.t1 AT4G11880 53.448 58 27 0 1 58 1 58 6.46e-15 70.1
MS.gene016287.t1 AT4G11880 53.448 58 27 0 1 58 1 58 6.46e-15 70.1
MS.gene016287.t1 AT2G14210 53.448 58 27 0 1 58 1 58 7.05e-15 70.1
MS.gene016287.t1 AT5G62165 40.000 75 45 0 1 75 1 75 8.89e-15 67.0
MS.gene016287.t1 AT4G18960 31.538 130 84 2 2 131 18 142 9.32e-15 70.1
MS.gene016287.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.60e-15 68.2
MS.gene016287.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.60e-15 68.2
MS.gene016287.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.60e-15 68.2
MS.gene016287.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.60e-15 68.2
MS.gene016287.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.60e-15 68.2
MS.gene016287.t1 AT1G77980 47.887 71 36 1 1 70 1 71 1.13e-14 70.9
MS.gene016287.t1 AT2G03710 54.386 57 26 0 1 57 1 57 1.18e-14 68.9
MS.gene016287.t1 AT5G65050 54.545 55 25 0 1 55 1 55 1.30e-14 68.9
MS.gene016287.t1 AT5G65050 54.545 55 25 0 1 55 1 55 1.37e-14 68.6
MS.gene016287.t1 AT5G65050 54.545 55 25 0 1 55 1 55 1.41e-14 68.6
MS.gene016287.t1 AT5G62165 40.000 75 45 0 1 75 1 75 1.56e-14 68.6
MS.gene016287.t1 AT5G62165 40.000 75 45 0 1 75 1 75 1.56e-14 68.6
MS.gene016287.t1 AT5G62165 42.029 69 40 0 1 69 1 69 1.68e-14 68.9
MS.gene016287.t1 AT5G62165 42.029 69 40 0 1 69 1 69 1.68e-14 68.9
MS.gene016287.t1 AT5G62165 42.029 69 40 0 1 69 1 69 1.68e-14 68.9
MS.gene016287.t1 AT5G65080 50.909 55 27 0 1 55 8 62 2.46e-14 68.2
MS.gene016287.t1 AT3G58780 50.847 59 29 0 1 59 16 74 2.95e-14 68.9
MS.gene016287.t1 AT3G30260 49.123 57 29 0 1 57 1 57 2.99e-14 68.9
MS.gene016287.t1 AT1G69120 43.056 72 38 1 1 72 1 69 3.89e-14 68.2
MS.gene016287.t1 AT2G03710 54.386 57 26 0 1 57 1 57 4.06e-14 68.6
MS.gene016287.t1 AT2G03710 54.386 57 26 0 1 57 1 57 4.31e-14 68.6
MS.gene016287.t1 AT1G46408 48.148 81 35 4 1 74 1 81 6.96e-14 67.8
MS.gene016287.t1 AT5G15800 50.877 57 28 0 1 57 1 57 7.49e-14 67.8
MS.gene016287.t1 AT4G37435 30.058 173 93 6 1 147 1 171 7.86e-14 66.6
MS.gene016287.t1 AT1G69120 43.056 72 38 1 1 72 1 69 8.08e-14 67.8
MS.gene016287.t1 AT3G02310 50.877 57 28 0 1 57 1 57 8.33e-14 66.6
MS.gene016287.t1 AT1G28450 40.278 72 43 0 2 73 8 79 8.94e-14 66.2
MS.gene016287.t1 AT5G15800 50.877 57 28 0 1 57 1 57 1.18e-13 67.4
MS.gene016287.t1 AT5G60910 40.278 72 40 1 1 72 1 69 1.29e-13 67.0
MS.gene016287.t1 AT1G24260 50.877 57 28 0 1 57 1 57 1.46e-13 67.0
MS.gene016287.t1 AT1G24260 50.877 57 28 0 1 57 1 57 1.46e-13 66.6
MS.gene016287.t1 AT1G24260 50.877 57 28 0 1 57 1 57 1.52e-13 67.0
MS.gene016287.t1 AT3G02310 50.877 57 28 0 1 57 1 57 1.60e-13 66.6
MS.gene016287.t1 AT1G26310 46.552 58 31 0 1 58 1 58 1.89e-13 66.6
MS.gene016287.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.01e-12 65.5
MS.gene016287.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.02e-12 65.5
MS.gene016287.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.17e-12 65.5
MS.gene016287.t1 AT5G49490 44.444 72 36 1 3 70 46 117 1.73e-12 64.3
MS.gene016287.t1 AT1G69540 40.000 75 44 1 1 74 1 75 1.84e-12 64.7
MS.gene016287.t1 AT5G38620 43.056 72 37 1 3 70 6 77 2.00e-12 64.3
MS.gene016287.t1 AT1G69540 40.000 75 44 1 1 74 1 75 2.30e-12 64.3
MS.gene016287.t1 AT5G49420 42.857 77 39 2 3 74 8 84 2.70e-12 63.9
MS.gene016287.t1 AT5G04640 40.260 77 41 2 3 74 5 81 3.01e-12 63.9
MS.gene016287.t1 AT1G77950 38.028 71 43 1 1 70 1 71 7.91e-12 62.0
MS.gene016287.t1 AT1G77950 38.028 71 43 1 1 70 1 71 7.91e-12 62.0
MS.gene016287.t1 AT1G77950 38.028 71 43 1 1 70 1 71 7.91e-12 62.0
MS.gene016287.t1 AT1G77950 38.028 71 43 1 1 70 1 71 7.91e-12 62.0
MS.gene016287.t1 AT2G26320 44.828 58 32 0 1 58 17 74 1.98e-11 58.5
MS.gene016287.t1 AT1G77080 66.667 39 13 0 1 39 1 39 2.58e-11 59.7
MS.gene016287.t1 AT1G77080 66.667 39 13 0 1 39 1 39 2.96e-11 59.3
MS.gene016287.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.06e-11 61.2
MS.gene016287.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.06e-11 61.2
MS.gene016287.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.06e-11 61.2
MS.gene016287.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.30e-11 61.2
MS.gene016287.t1 AT1G77080 66.667 39 13 0 1 39 1 39 4.78e-11 58.2
MS.gene016287.t1 AT1G77080 66.667 39 13 0 1 39 1 39 6.36e-11 58.9
MS.gene016287.t1 AT1G77080 66.667 39 13 0 1 39 1 39 9.53e-11 58.5

Find 49 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACAACAATAGCAATTT+TGG 0.202437 8.2:-55867518 None:intergenic
GGGAATAAACCTTACTCTTT+TGG 0.260036 8.2:+55867547 MS.gene016287:CDS
CCATCACCTTCTCATGTTGT+TGG 0.285658 8.2:-55867669 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8.2:-55867633 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.338519 8.2:-55867436 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8.2:+55867792 MS.gene016287:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8.2:+55867777 MS.gene016287:CDS
ATTCCTTAGGCTGGCTGAGT+AGG 0.404026 8.2:-55867759 None:intergenic
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8.2:+55867454 MS.gene016287:CDS
TTCTAGGACATCGTTTAGAT+CGG 0.426926 8.2:-55867617 None:intergenic
GTTCAGATCATCTATGTTAG+AGG 0.427003 8.2:-55867647 None:intergenic
GCTATTGTTGTATTCTCTCC+CGG 0.429351 8.2:+55867526 MS.gene016287:CDS
ATCATCTATGTTAGAGGAAG+GGG 0.438239 8.2:-55867641 None:intergenic
TGATATAGCTGAGGCTGAAA+AGG 0.444985 8.2:+55867693 MS.gene016287:CDS
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8.2:-55867768 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8.2:-55867545 None:intergenic
TCTAGGACATCGTTTAGATC+GGG 0.468128 8.2:-55867616 None:intergenic
ATGTGACTTGTCTCGCCTCT+GGG 0.475748 8.2:-55867435 None:intergenic
TTCCTTAGGCTGGCTGAGTA+GGG 0.493210 8.2:-55867758 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8.2:+55867453 MS.gene016287:CDS
CCAGGGTGGCCAAAAGAGTA+AGG 0.504633 8.2:-55867556 None:intergenic
ACAATTAACTTATTATGGGT+CGG 0.510146 8.2:+55867383 None:intergenic
TATGCTAAAAGAATACAAAT+CGG 0.512468 8.2:+55867735 MS.gene016287:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.513990 8.2:+55867494 MS.gene016287:CDS
AATGAATCTTTCCATTCCTT+AGG 0.516915 8.2:-55867772 None:intergenic
AACGAGCTTGCCATCTTGTG+TGG 0.526962 8.2:+55867493 MS.gene016287:CDS
AGATTCATTAATGGAGCTCA+AGG 0.527990 8.2:+55867786 MS.gene016287:CDS
CTATTGTTGTATTCTCTCCC+GGG 0.529578 8.2:+55867527 MS.gene016287:CDS
TGAGGCTGAAAAGGAAGATA+AGG 0.530489 8.2:+55867702 MS.gene016287:CDS
TTCTATGATGCTCCTTGCAA+AGG 0.533227 8.2:+55867849 MS.gene016287:CDS
CAACCACGGGCTCCTTTGCA+AGG 0.540458 8.2:-55867861 None:intergenic
AACCAAGCCACAGAAAAGAA+AGG 0.541403 8.2:+55867892 MS.gene016287:CDS
GACGCAATAGCATCAACACC+AGG 0.542737 8.2:-55867574 None:intergenic
GGCCCTACTCAGCCAGCCTA+AGG 0.543600 8.2:+55867756 MS.gene016287:CDS
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8.2:-55867544 None:intergenic
AGATCATCTATGTTAGAGGA+AGG 0.556275 8.2:-55867643 None:intergenic
GATCATCTATGTTAGAGGAA+GGG 0.557711 8.2:-55867642 None:intergenic
CTTGCAAAGGAGCCCGTGGT+TGG 0.559070 8.2:+55867862 MS.gene016287:CDS
TACTCAGCCAGCCTAAGGAA+TGG 0.565385 8.2:+55867761 MS.gene016287:CDS
TCTGAACCAACAACATGAGA+AGG 0.616384 8.2:+55867663 MS.gene016287:CDS
AAAGGAAGATAAGGCCAATG+AGG 0.641735 8.2:+55867711 MS.gene016287:CDS
GCGCAAAATTGAGATTGCGA+TGG 0.644560 8.2:+55867405 MS.gene016287:CDS
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8.2:+55867455 MS.gene016287:CDS
CGAGCTTGCCATCTTGTGTG+GGG 0.663768 8.2:+55867495 MS.gene016287:CDS
GCTCCTTGCAAAGGAGCCCG+TGG 0.674787 8.2:+55867858 MS.gene016287:CDS
CCAACAACATGAGAAGGTGA+TGG 0.695579 8.2:+55867669 MS.gene016287:CDS
GGTGATGGCTGATATAGCTG+AGG 0.696275 8.2:+55867684 MS.gene016287:CDS
ACGCAATAGCATCAACACCA+GGG 0.722765 8.2:-55867573 None:intergenic
CAATAGCATCAACACCAGGG+TGG 0.755219 8.2:-55867570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTAAAAGAATACAAAT+CGG + chr8.2:55867735-55867754 MS.gene016287:CDS 20.0%
!! ATATTTTCCTTTCTTTTCTG+TGG - chr8.2:55867902-55867921 None:intergenic 25.0%
!! GAATACAACAATAGCAATTT+TGG - chr8.2:55867521-55867540 None:intergenic 25.0%
AAAAGAGTAAGGTTTATTCC+CGG - chr8.2:55867548-55867567 None:intergenic 30.0%
AATGAATCTTTCCATTCCTT+AGG - chr8.2:55867775-55867794 None:intergenic 30.0%
GGAATGGAAAGATTCATTAA+TGG + chr8.2:55867777-55867796 MS.gene016287:CDS 30.0%
! TTCTTTTAGCATATCCTCAT+TGG - chr8.2:55867728-55867747 None:intergenic 30.0%
!! TTGGTTTTTAATTCCAACCA+CGG - chr8.2:55867878-55867897 None:intergenic 30.0%
!!! CTTTTTTGAATAACCCCATT+CGG - chr8.2:55867471-55867490 None:intergenic 30.0%
AAAGAGTAAGGTTTATTCCC+GGG - chr8.2:55867547-55867566 None:intergenic 35.0%
AGATCATCTATGTTAGAGGA+AGG - chr8.2:55867646-55867665 None:intergenic 35.0%
AGATTCATTAATGGAGCTCA+AGG + chr8.2:55867786-55867805 MS.gene016287:CDS 35.0%
ATCATCTATGTTAGAGGAAG+GGG - chr8.2:55867644-55867663 None:intergenic 35.0%
ATTAATGGAGCTCAAGGATA+TGG + chr8.2:55867792-55867811 MS.gene016287:CDS 35.0%
GATCATCTATGTTAGAGGAA+GGG - chr8.2:55867645-55867664 None:intergenic 35.0%
GTTCAGATCATCTATGTTAG+AGG - chr8.2:55867650-55867669 None:intergenic 35.0%
! GGGAATAAACCTTACTCTTT+TGG + chr8.2:55867547-55867566 MS.gene016287:CDS 35.0%
!! TGGTTTTTAATTCCAACCAC+GGG - chr8.2:55867877-55867896 None:intergenic 35.0%
!! TTCTAGGACATCGTTTAGAT+CGG - chr8.2:55867620-55867639 None:intergenic 35.0%
AAAGGAAGATAAGGCCAATG+AGG + chr8.2:55867711-55867730 MS.gene016287:CDS 40.0%
AACCAAGCCACAGAAAAGAA+AGG + chr8.2:55867892-55867911 MS.gene016287:CDS 40.0%
AATCTTTCCATTCCTTAGGC+TGG - chr8.2:55867771-55867790 None:intergenic 40.0%
CTATTGTTGTATTCTCTCCC+GGG + chr8.2:55867527-55867546 MS.gene016287:CDS 40.0%
GCTATTGTTGTATTCTCTCC+CGG + chr8.2:55867526-55867545 MS.gene016287:CDS 40.0%
TCTGAACCAACAACATGAGA+AGG + chr8.2:55867663-55867682 MS.gene016287:CDS 40.0%
TGAGGCTGAAAAGGAAGATA+AGG + chr8.2:55867702-55867721 MS.gene016287:CDS 40.0%
TGATATAGCTGAGGCTGAAA+AGG + chr8.2:55867693-55867712 MS.gene016287:CDS 40.0%
TTCTATGATGCTCCTTGCAA+AGG + chr8.2:55867849-55867868 MS.gene016287:CDS 40.0%
! TCTAGGACATCGTTTAGATC+GGG - chr8.2:55867619-55867638 None:intergenic 40.0%
! TTCCTTTCTTTTCTGTGGCT+TGG - chr8.2:55867897-55867916 None:intergenic 40.0%
ACGCAATAGCATCAACACCA+GGG - chr8.2:55867576-55867595 None:intergenic 45.0%
CCAACAACATGAGAAGGTGA+TGG + chr8.2:55867669-55867688 MS.gene016287:CDS 45.0%
CCATCACCTTCTCATGTTGT+TGG - chr8.2:55867672-55867691 None:intergenic 45.0%
GCGCAAAATTGAGATTGCGA+TGG + chr8.2:55867405-55867424 MS.gene016287:CDS 45.0%
TGTTAGAGGAAGGGGTTTCT+AGG - chr8.2:55867636-55867655 None:intergenic 45.0%
!! AATTTTGGCCCCACACAAGA+TGG - chr8.2:55867506-55867525 None:intergenic 45.0%
!! ACATTCTCAAAGCGCCGAAT+GGG + chr8.2:55867454-55867473 MS.gene016287:CDS 45.0%
AACGAGCTTGCCATCTTGTG+TGG + chr8.2:55867493-55867512 MS.gene016287:CDS 50.0%
ACGAGCTTGCCATCTTGTGT+GGG + chr8.2:55867494-55867513 MS.gene016287:CDS 50.0%
CAATAGCATCAACACCAGGG+TGG - chr8.2:55867573-55867592 None:intergenic 50.0%
GACGCAATAGCATCAACACC+AGG - chr8.2:55867577-55867596 None:intergenic 50.0%
TACTCAGCCAGCCTAAGGAA+TGG + chr8.2:55867761-55867780 MS.gene016287:CDS 50.0%
TGCGATGGTGAAAAACCCAG+AGG + chr8.2:55867420-55867439 MS.gene016287:CDS 50.0%
! AATGTGACTTGTCTCGCCTC+TGG - chr8.2:55867439-55867458 None:intergenic 50.0%
! ATGTGACTTGTCTCGCCTCT+GGG - chr8.2:55867438-55867457 None:intergenic 50.0%
! ATTCCTTAGGCTGGCTGAGT+AGG - chr8.2:55867762-55867781 None:intergenic 50.0%
! GGTGATGGCTGATATAGCTG+AGG + chr8.2:55867684-55867703 MS.gene016287:CDS 50.0%
! TTCCTTAGGCTGGCTGAGTA+GGG - chr8.2:55867761-55867780 None:intergenic 50.0%
!! CACATTCTCAAAGCGCCGAA+TGG + chr8.2:55867453-55867472 MS.gene016287:CDS 50.0%
!! CATTCTCAAAGCGCCGAATG+GGG + chr8.2:55867455-55867474 MS.gene016287:CDS 50.0%
CCAGGGTGGCCAAAAGAGTA+AGG - chr8.2:55867559-55867578 None:intergenic 55.0%
CGAGCTTGCCATCTTGTGTG+GGG + chr8.2:55867495-55867514 MS.gene016287:CDS 55.0%
! CCTTACTCTTTTGGCCACCC+TGG + chr8.2:55867556-55867575 MS.gene016287:CDS 55.0%
CAACCACGGGCTCCTTTGCA+AGG - chr8.2:55867864-55867883 None:intergenic 60.0%
CTTGCAAAGGAGCCCGTGGT+TGG + chr8.2:55867862-55867881 MS.gene016287:CDS 60.0%
GCTCCTTGCAAAGGAGCCCG+TGG + chr8.2:55867858-55867877 MS.gene016287:CDS 65.0%
GGCCCTACTCAGCCAGCCTA+AGG + chr8.2:55867756-55867775 MS.gene016287:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 55867397 55867924 55867397 ID=MS.gene016287
chr8.2 mRNA 55867397 55867924 55867397 ID=MS.gene016287.t1;Parent=MS.gene016287
chr8.2 exon 55867397 55867924 55867397 ID=MS.gene016287.t1.exon1;Parent=MS.gene016287.t1
chr8.2 CDS 55867397 55867924 55867397 ID=cds.MS.gene016287.t1;Parent=MS.gene016287.t1
Gene Sequence

>MS.gene016287

ATGGGTCGGCGCAAAATTGAGATTGCGATGGTGAAAAACCCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGGCCAAAATTGCTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTGGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTCCTAGAAACCCCTTCCTCTAACATAGATGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGATATGCTAAAAGAATACAAATCGGCCCTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTCATGATTTAGATATATCAGATTCTATGATGCTCCTTGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGCCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>MS.gene016287.t1

MGRRKIEIAMVKNPEARQVTFSKRRMGLFKKANELAILCGAKIAIVVFSPGNKPYSFGHPGVDAIASKFLQQEPDLNDVLETPSSNIDDLNQQHEKVMADIAEAEKEDKANEDMLKEYKSALLSQPKEWKDSLMELKDMVKSRLHDLDISDSMMLLAKEPVVGIKNQATEKKGKY