AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016289

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016289.t1 MTR_8g046350 93.373 166 8 1 1 166 1 163 4.79e-111 313
MS.gene016289.t1 MTR_8g051580 62.147 177 64 1 1 174 1 177 8.25e-75 222
MS.gene016289.t1 MTR_1g047550 56.000 175 74 1 1 172 1 175 1.91e-65 198
MS.gene016289.t1 MTR_4g131030 53.514 185 66 1 1 165 1 185 2.57e-64 197
MS.gene016289.t1 MTR_8g079502 56.886 167 69 1 1 164 1 167 1.74e-62 191
MS.gene016289.t1 MTR_1g063160 52.000 175 81 1 1 172 1 175 2.12e-59 183
MS.gene016289.t1 MTR_1g054265 51.190 168 79 1 1 165 1 168 4.89e-56 174
MS.gene016289.t1 MTR_4g094632 36.145 166 87 5 1 161 1 152 2.20e-28 103
MS.gene016289.t1 MTR_3g080940 44.538 119 58 3 1 114 8 123 2.74e-25 97.1
MS.gene016289.t1 MTR_3g052870 38.095 147 70 3 2 141 9 141 6.51e-25 96.3
MS.gene016289.t1 MTR_1g105920 43.860 114 57 2 2 108 9 122 1.57e-24 95.9
MS.gene016289.t1 MTR_1g106070 45.361 97 48 1 2 93 9 105 1.08e-23 92.4
MS.gene016289.t1 MTR_2g105290 37.313 134 78 3 1 133 11 139 1.57e-23 91.7
MS.gene016289.t1 MTR_5g045560 51.282 78 38 0 1 78 8 85 2.73e-23 92.4
MS.gene016289.t1 MTR_3g052920 46.392 97 47 2 2 93 9 105 5.28e-23 91.7
MS.gene016289.t1 MTR_1g105910 45.545 101 50 1 2 97 9 109 5.54e-23 91.7
MS.gene016289.t1 MTR_5g055100 53.247 77 36 0 2 78 9 85 6.42e-23 91.7
MS.gene016289.t1 MTR_1g077360 54.545 77 35 0 2 78 9 85 9.19e-23 91.3
MS.gene016289.t1 MTR_2g030740 41.880 117 61 2 2 111 9 125 1.29e-22 90.9
MS.gene016289.t1 MTR_1g108580 36.735 147 67 3 2 122 9 155 1.41e-22 90.5
MS.gene016289.t1 MTR_3g030770 40.496 121 67 2 2 117 9 129 2.86e-22 89.7
MS.gene016289.t1 MTR_8g043650 45.361 97 48 1 2 93 9 105 3.51e-22 89.7
MS.gene016289.t1 MTR_1g108510 43.243 111 57 3 2 107 9 118 4.94e-22 89.0
MS.gene016289.t1 MTR_1g012570 40.650 123 61 2 2 112 9 131 5.29e-22 89.4
MS.gene016289.t1 MTR_1g075600 53.247 77 36 0 2 78 9 85 6.07e-22 89.0
MS.gene016289.t1 MTR_2g093190 36.054 147 68 1 2 122 9 155 7.54e-22 88.6
MS.gene016289.t1 MTR_4g094638 48.684 76 39 0 1 76 1 76 1.26e-21 86.7
MS.gene016289.t1 MTR_8g086290 36.496 137 79 4 2 136 12 142 1.61e-21 86.7
MS.gene016289.t1 MTR_0121s0080 35.065 154 85 2 2 140 9 162 3.60e-21 87.0
MS.gene016289.t1 MTR_3g030780 50.649 77 38 0 2 78 9 85 4.21e-21 84.3
MS.gene016289.t1 MTR_5g053390 50.649 77 38 0 2 78 9 85 5.08e-21 86.7
MS.gene016289.t1 MTR_7g028448 36.364 132 68 3 17 135 27 155 5.76e-21 84.7
MS.gene016289.t1 MTR_4g036915 36.364 132 68 3 17 135 27 155 5.76e-21 84.7
MS.gene016289.t1 MTR_0121s0100 40.541 111 60 2 2 107 9 118 7.35e-21 83.6
MS.gene016289.t1 MTR_2g085280 50.649 77 38 0 2 78 9 85 1.48e-20 85.5
MS.gene016289.t1 MTR_2g085250 50.649 77 38 0 2 78 9 85 1.53e-20 85.5
MS.gene016289.t1 MTR_1g105905 39.823 113 59 2 18 125 8 116 2.25e-19 82.0
MS.gene016289.t1 MTR_7g062350 53.968 63 29 0 16 78 35 97 2.47e-17 77.0
MS.gene016289.t1 MTR_4g127140 46.154 78 42 0 1 78 11 88 2.93e-16 72.8
MS.gene016289.t1 MTR_5g021270 29.167 144 68 2 1 144 1 110 5.94e-16 73.2
MS.gene016289.t1 MTR_5g021270 29.167 144 68 2 1 144 1 110 6.55e-16 72.8
MS.gene016289.t1 MTR_3g067875 58.333 48 20 0 18 65 8 55 1.90e-15 67.8
MS.gene016289.t1 MTR_5g066180 44.444 72 40 0 1 72 1 72 2.75e-15 71.2
MS.gene016289.t1 MTR_0003s0590 44.928 69 38 0 1 69 1 69 5.72e-15 70.9
MS.gene016289.t1 MTR_1g108500 63.830 47 17 0 18 64 113 159 8.02e-15 71.2
MS.gene016289.t1 MTR_1g053070 40.741 81 48 0 1 81 1 81 9.12e-15 70.1
MS.gene016289.t1 MTR_3g067910 47.541 61 32 0 18 78 6 66 1.23e-14 66.6
MS.gene016289.t1 MTR_8g087860 31.193 109 75 0 1 109 17 125 1.83e-14 69.3
MS.gene016289.t1 MTR_3g109930 32.203 118 76 2 17 133 17 131 1.89e-14 67.8
MS.gene016289.t1 MTR_8g033220 35.922 103 63 2 1 101 1 102 2.31e-14 68.6
MS.gene016289.t1 MTR_8g033220 35.922 103 63 2 1 101 1 102 2.70e-14 68.6
MS.gene016289.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 4.30e-14 68.2
MS.gene016289.t1 MTR_4g093970 35.897 117 66 2 1 108 27 143 4.48e-14 68.2
MS.gene016289.t1 MTR_5g066960 50.000 60 30 0 1 60 1 60 4.87e-14 63.9
MS.gene016289.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 5.11e-14 67.8
MS.gene016289.t1 MTR_3g452380 43.478 69 39 0 1 69 16 84 5.22e-14 67.8
MS.gene016289.t1 MTR_2g009890 37.931 87 53 1 1 87 1 86 7.07e-14 68.2
MS.gene016289.t1 MTR_2g017865 30.275 109 76 0 1 109 16 124 8.72e-14 67.4
MS.gene016289.t1 MTR_7g075870 31.683 101 69 0 1 101 1 101 1.46e-13 66.2
MS.gene016289.t1 MTR_3g113030 46.875 64 34 0 1 64 1 64 1.68e-13 66.2
MS.gene016289.t1 MTR_4g102530 42.029 69 40 0 1 69 1 69 3.12e-13 65.1
MS.gene016289.t1 MTR_8g033270 48.276 58 30 0 1 58 1 58 3.73e-13 65.9
MS.gene016289.t1 MTR_7g075870 48.276 58 30 0 1 58 1 58 3.85e-13 65.1
MS.gene016289.t1 MTR_5g032150 39.286 84 50 1 1 84 1 83 4.47e-13 65.1
MS.gene016289.t1 MTR_3g005530 39.130 69 42 0 1 69 1 69 4.98e-13 65.1
MS.gene016289.t1 MTR_5g032520 39.286 84 50 1 1 84 1 83 6.37e-13 64.7
MS.gene016289.t1 MTR_1g029670 33.621 116 60 3 1 114 1 101 1.55e-12 62.8
MS.gene016289.t1 MTR_1g101970 40.845 71 42 0 1 71 1 71 1.84e-12 62.8
MS.gene016289.t1 MTR_3g088615 30.357 112 74 2 1 108 1 112 2.05e-12 62.8
MS.gene016289.t1 MTR_7g016600 44.262 61 34 0 1 61 1 61 2.24e-12 63.5
MS.gene016289.t1 MTR_4g084740 42.254 71 40 1 1 70 1 71 2.43e-12 64.3
MS.gene016289.t1 MTR_2g461710 43.860 57 32 0 1 57 1 57 2.82e-12 59.3
MS.gene016289.t1 MTR_8g022970 33.065 124 69 3 2 122 15 127 3.34e-12 62.0
MS.gene016289.t1 MTR_4g093030 36.170 94 58 1 1 92 1 94 4.34e-12 61.2
MS.gene016289.t1 MTR_1g038300 42.254 71 39 1 1 69 1 71 4.89e-12 62.4
MS.gene016289.t1 MTR_5g046870 45.614 57 31 0 1 57 1 57 6.66e-12 59.7
MS.gene016289.t1 MTR_3g102570 40.845 71 41 1 1 70 1 71 9.58e-12 62.4
MS.gene016289.t1 MTR_3g084980 47.368 57 30 0 1 57 1 57 9.94e-12 61.6
MS.gene016289.t1 MTR_5g041650 46.296 54 29 0 1 54 38 91 1.18e-11 62.4
MS.gene016289.t1 MTR_4g109830 32.979 94 50 2 1 81 1 94 1.32e-11 61.2
MS.gene016289.t1 MTR_8g097090 44.262 61 34 0 1 61 1 61 1.36e-11 61.2
MS.gene016289.t1 MTR_7g016630 35.616 73 46 1 1 72 1 73 1.40e-11 61.6
MS.gene016289.t1 MTR_6g015975 45.614 57 31 0 1 57 1 57 1.42e-11 61.2
MS.gene016289.t1 MTR_4g109810 42.623 61 35 0 1 61 1 61 1.50e-11 61.2
MS.gene016289.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.57e-11 60.5
MS.gene016289.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.70e-11 60.5
MS.gene016289.t1 MTR_5g046790 38.710 62 38 0 1 62 1 62 1.73e-11 60.5
MS.gene016289.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.84e-11 60.1
MS.gene016289.t1 MTR_4g036050 49.091 55 28 0 1 55 1 55 1.87e-11 60.1
MS.gene016289.t1 MTR_8g066260 40.323 62 37 0 1 62 1 62 1.89e-11 60.8
MS.gene016289.t1 MTR_3g437790 42.623 61 34 1 19 78 30 90 2.88e-11 59.7
MS.gene016289.t1 MTR_7g075850 42.188 64 37 0 1 64 1 64 2.89e-11 60.5
MS.gene016289.t1 MTR_4g108720 29.323 133 67 2 1 106 1 133 6.21e-11 60.1
MS.gene016289.t1 MTR_4g051538 31.250 96 54 2 19 108 26 115 8.62e-11 58.9
MS.gene016289.t1 MTR_1g041615 59.524 42 17 0 17 58 21 62 8.94e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016289.t1 AT2G34440 38.596 171 92 2 1 158 1 171 4.82e-34 118
MS.gene016289.t1 AT3G66656 49.606 127 58 2 1 121 1 127 8.95e-32 112
MS.gene016289.t1 AT2G24840 43.802 121 63 2 1 117 62 181 2.67e-28 106
MS.gene016289.t1 AT5G60440 42.254 142 71 4 2 136 7 144 3.08e-25 99.0
MS.gene016289.t1 AT4G36590 38.554 166 77 5 2 157 7 157 3.06e-24 95.5
MS.gene016289.t1 AT1G01530 37.500 152 87 3 1 148 6 153 1.42e-22 90.9
MS.gene016289.t1 AT1G65360 37.931 145 71 4 1 136 6 140 7.36e-22 88.6
MS.gene016289.t1 AT1G72350 38.843 121 67 3 2 122 43 156 1.76e-18 79.7
MS.gene016289.t1 AT1G47760 29.814 161 103 3 1 154 1 158 3.93e-18 77.8
MS.gene016289.t1 AT1G28460 44.928 69 38 0 2 70 8 76 1.76e-17 76.3
MS.gene016289.t1 AT5G65070 36.134 119 72 3 1 116 1 118 5.34e-17 73.9
MS.gene016289.t1 AT1G29962 43.056 72 41 0 2 73 8 79 8.08e-17 74.3
MS.gene016289.t1 AT5G65070 35.000 140 84 4 1 134 1 139 1.49e-16 73.9
MS.gene016289.t1 AT4G24540 35.632 87 56 0 1 87 1 87 4.54e-16 73.2
MS.gene016289.t1 AT3G04100 43.421 76 40 1 2 74 14 89 6.28e-16 72.4
MS.gene016289.t1 AT3G61120 40.964 83 47 1 1 81 1 83 1.51e-15 72.0
MS.gene016289.t1 AT4G22950 44.928 69 38 0 1 69 1 69 1.71e-15 70.5
MS.gene016289.t1 AT2G22630 47.826 69 36 0 1 69 1 69 3.92e-15 70.9
MS.gene016289.t1 AT2G22630 47.826 69 36 0 1 69 1 69 3.92e-15 70.9
MS.gene016289.t1 AT5G65080 34.507 142 87 3 1 136 8 149 3.94e-15 70.1
MS.gene016289.t1 AT3G57230 43.478 69 39 0 1 69 1 69 4.33e-15 68.9
MS.gene016289.t1 AT3G57390 44.928 69 38 0 1 69 1 69 4.92e-15 70.5
MS.gene016289.t1 AT2G45660 33.333 105 70 0 1 105 1 105 5.21e-15 68.9
MS.gene016289.t1 AT3G57390 44.928 69 38 0 1 69 1 69 7.65e-15 70.5
MS.gene016289.t1 AT3G57230 43.478 69 39 0 1 69 1 69 8.09e-15 70.1
MS.gene016289.t1 AT3G57230 43.478 69 39 0 1 69 1 69 8.09e-15 70.1
MS.gene016289.t1 AT2G22540 36.538 104 64 2 1 103 1 103 8.97e-15 70.1
MS.gene016289.t1 AT2G22540 36.538 104 64 2 1 103 1 103 8.97e-15 70.1
MS.gene016289.t1 AT4G22950 44.928 69 38 0 1 69 1 69 1.02e-14 69.7
MS.gene016289.t1 AT4G22950 44.928 69 38 0 1 69 1 69 1.02e-14 69.7
MS.gene016289.t1 AT5G65070 38.298 94 56 1 1 94 1 92 1.38e-14 69.3
MS.gene016289.t1 AT2G45660 33.333 105 70 0 1 105 1 105 1.41e-14 68.9
MS.gene016289.t1 AT5G13790 33.607 122 59 1 1 122 1 100 1.66e-14 69.7
MS.gene016289.t1 AT1G17310 49.315 73 35 1 2 74 48 118 1.69e-14 68.9
MS.gene016289.t1 AT5G65070 38.298 94 56 1 1 94 1 92 2.01e-14 68.6
MS.gene016289.t1 AT1G17310 49.315 73 35 1 2 74 59 129 2.19e-14 68.9
MS.gene016289.t1 AT4G37940 44.928 69 38 0 1 69 1 69 2.75e-14 68.6
MS.gene016289.t1 AT5G13790 35.052 97 63 0 1 97 1 97 2.89e-14 68.9
MS.gene016289.t1 AT4G37940 44.928 69 38 0 1 69 1 69 3.61e-14 68.2
MS.gene016289.t1 AT2G45650 42.029 69 40 0 1 69 1 69 5.26e-14 68.2
MS.gene016289.t1 AT4G11880 49.180 61 31 0 1 61 1 61 5.64e-14 66.6
MS.gene016289.t1 AT4G11880 49.180 61 31 0 1 61 1 61 5.64e-14 66.6
MS.gene016289.t1 AT3G54340 36.082 97 47 1 1 82 1 97 6.52e-14 67.4
MS.gene016289.t1 AT4G37940 41.176 85 46 1 1 81 1 85 7.16e-14 66.2
MS.gene016289.t1 AT4G09960 34.066 91 55 1 1 91 1 86 9.01e-14 67.0
MS.gene016289.t1 AT4G09960 34.066 91 55 1 1 91 1 86 9.96e-14 67.0
MS.gene016289.t1 AT4G09960 34.066 91 55 1 1 91 2 87 1.02e-13 67.0
MS.gene016289.t1 AT5G10140 47.368 57 30 0 1 57 1 57 1.35e-13 65.5
MS.gene016289.t1 AT4G09960 34.066 91 55 1 1 91 11 96 1.52e-13 66.6
MS.gene016289.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.62e-13 66.2
MS.gene016289.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.62e-13 66.2
MS.gene016289.t1 AT5G20240 43.939 66 37 0 1 66 1 66 2.11e-13 64.7
MS.gene016289.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.16e-13 65.5
MS.gene016289.t1 AT4G09960 34.066 91 55 1 1 91 27 112 2.20e-13 66.6
MS.gene016289.t1 AT4G09960 34.066 91 55 1 1 91 96 181 2.25e-13 67.0
MS.gene016289.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.39e-13 65.1
MS.gene016289.t1 AT5G10140 47.368 57 30 0 1 57 1 57 2.44e-13 65.5
MS.gene016289.t1 AT1G28450 38.889 72 44 0 2 73 8 79 3.11e-13 65.1
MS.gene016289.t1 AT5G65070 44.828 58 32 0 1 58 1 58 3.66e-13 65.5
MS.gene016289.t1 AT5G65060 50.909 55 27 0 1 55 1 55 4.14e-13 64.7
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 4.28e-13 63.9
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 4.28e-13 63.9
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 4.28e-13 63.9
MS.gene016289.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.68e-13 63.9
MS.gene016289.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.68e-13 63.9
MS.gene016289.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.68e-13 63.9
MS.gene016289.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.68e-13 63.9
MS.gene016289.t1 AT5G62165 49.123 57 29 0 1 57 1 57 4.68e-13 63.9
MS.gene016289.t1 AT1G22130 45.070 71 38 1 1 70 1 71 5.11e-13 66.2
MS.gene016289.t1 AT5G20240 43.939 66 37 0 1 66 1 66 5.83e-13 64.7
MS.gene016289.t1 AT5G51870 40.580 69 41 0 1 69 1 69 5.99e-13 64.7
MS.gene016289.t1 AT5G65050 49.091 55 28 0 1 55 1 55 6.52e-13 63.9
MS.gene016289.t1 AT5G51870 40.580 69 41 0 1 69 1 69 6.64e-13 63.9
MS.gene016289.t1 AT5G62165 49.123 57 29 0 1 57 1 57 7.04e-13 62.0
MS.gene016289.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.06e-13 64.3
MS.gene016289.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.73e-13 63.9
MS.gene016289.t1 AT3G58780 37.209 86 41 1 1 73 16 101 9.16e-13 64.7
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 9.32e-13 63.9
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 9.32e-13 63.9
MS.gene016289.t1 AT5G51870 40.580 69 41 0 1 69 1 69 9.43e-13 64.3
MS.gene016289.t1 AT2G42830 35.106 94 56 2 1 94 16 104 9.58e-13 64.7
MS.gene016289.t1 AT2G42830 35.106 94 56 2 1 94 16 104 9.97e-13 64.7
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 1.03e-12 63.9
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 1.03e-12 63.9
MS.gene016289.t1 AT5G62165 48.276 58 30 0 1 58 1 58 1.03e-12 63.9
MS.gene016289.t1 AT2G22540 49.091 55 28 0 1 55 1 55 1.05e-12 64.3
MS.gene016289.t1 AT5G51870 40.580 69 41 0 1 69 24 92 1.06e-12 63.5
MS.gene016289.t1 AT3G58780 35.106 94 56 2 1 94 16 104 1.08e-12 64.3
MS.gene016289.t1 AT3G58780 35.106 94 56 2 1 94 22 110 1.15e-12 64.3
MS.gene016289.t1 AT5G51870 40.580 69 41 0 1 69 11 79 1.30e-12 63.9
MS.gene016289.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.39e-12 65.1
MS.gene016289.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.44e-12 65.1
MS.gene016289.t1 AT1G77980 43.662 71 39 1 1 70 1 71 1.48e-12 64.7
MS.gene016289.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.48e-12 65.1
MS.gene016289.t1 AT2G14210 47.541 61 32 0 1 61 1 61 1.55e-12 63.9
MS.gene016289.t1 AT2G14210 47.541 61 32 0 1 61 1 61 1.74e-12 63.9
MS.gene016289.t1 AT3G58780 31.250 112 71 2 1 109 16 124 2.01e-12 63.9
MS.gene016289.t1 AT5G51860 45.161 62 34 0 1 62 1 62 2.07e-12 63.2
MS.gene016289.t1 AT5G23260 54.386 57 26 0 1 57 1 57 2.08e-12 63.9
MS.gene016289.t1 AT2G03710 49.123 57 29 0 1 57 1 57 2.18e-12 62.8
MS.gene016289.t1 AT5G23260 54.386 57 26 0 1 57 17 73 2.26e-12 63.9
MS.gene016289.t1 AT5G23260 54.386 57 26 0 1 57 17 73 2.28e-12 63.9
MS.gene016289.t1 AT5G23260 54.386 57 26 0 1 57 1 57 2.29e-12 63.5
MS.gene016289.t1 AT5G51860 45.161 62 34 0 1 62 1 62 2.31e-12 63.2
MS.gene016289.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.69e-12 62.8
MS.gene016289.t1 AT3G30260 34.831 89 54 2 1 88 1 86 2.84e-12 63.2
MS.gene016289.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.13e-12 62.0
MS.gene016289.t1 AT1G60920 43.750 80 39 3 3 76 5 84 3.16e-12 62.4
MS.gene016289.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.29e-12 62.0
MS.gene016289.t1 AT1G71692 50.909 55 27 0 1 55 1 55 3.92e-12 62.4
MS.gene016289.t1 AT4G18960 41.176 68 40 0 2 69 18 85 5.14e-12 62.8
MS.gene016289.t1 AT3G02310 45.902 61 33 0 1 61 1 61 5.45e-12 62.0
MS.gene016289.t1 AT5G65080 44.643 56 31 0 1 56 8 63 5.48e-12 62.0
MS.gene016289.t1 AT2G03710 49.123 57 29 0 1 57 1 57 5.82e-12 62.4
MS.gene016289.t1 AT2G03710 49.123 57 29 0 1 57 1 57 5.82e-12 62.4
MS.gene016289.t1 AT1G69120 40.278 72 40 1 1 72 1 69 6.61e-12 62.0
MS.gene016289.t1 AT1G69540 40.000 75 44 1 1 74 1 75 6.71e-12 63.2
MS.gene016289.t1 AT1G69540 40.000 75 44 1 1 74 1 75 6.91e-12 63.2
MS.gene016289.t1 AT3G58780 44.262 61 34 0 1 61 16 76 7.18e-12 62.4
MS.gene016289.t1 AT1G46408 44.444 81 38 4 1 74 1 81 8.90e-12 62.0
MS.gene016289.t1 AT5G15800 44.262 61 34 0 1 61 1 61 8.92e-12 62.0
MS.gene016289.t1 AT1G77950 38.028 71 43 1 1 70 1 71 9.66e-12 62.0
MS.gene016289.t1 AT1G77950 38.028 71 43 1 1 70 1 71 9.66e-12 62.0
MS.gene016289.t1 AT1G77950 38.028 71 43 1 1 70 1 71 9.66e-12 62.0
MS.gene016289.t1 AT1G77950 38.028 71 43 1 1 70 1 71 9.66e-12 62.0
MS.gene016289.t1 AT1G69120 40.278 72 40 1 1 72 1 69 9.91e-12 62.0
MS.gene016289.t1 AT5G04640 29.299 157 84 3 3 155 5 138 1.19e-11 62.0
MS.gene016289.t1 AT4G37435 30.899 178 85 8 1 152 1 166 1.23e-11 60.8
MS.gene016289.t1 AT5G15800 44.262 61 34 0 1 61 1 61 1.28e-11 61.6
MS.gene016289.t1 AT3G02310 47.368 57 30 0 1 57 1 57 1.42e-11 61.2
MS.gene016289.t1 AT2G26320 44.262 61 34 0 1 61 17 77 1.45e-11 58.9
MS.gene016289.t1 AT1G26310 41.935 62 36 0 1 62 1 62 1.49e-11 61.2
MS.gene016289.t1 AT5G60910 40.323 62 37 0 1 62 1 62 1.69e-11 61.2
MS.gene016289.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.71e-11 61.2
MS.gene016289.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.82e-11 61.2
MS.gene016289.t1 AT1G24260 44.262 61 34 0 1 61 1 61 1.83e-11 61.2
MS.gene016289.t1 AT5G38620 40.278 72 39 1 3 70 6 77 2.15e-11 61.6
MS.gene016289.t1 AT5G49420 40.260 77 41 2 3 74 8 84 2.55e-11 61.2
MS.gene016289.t1 AT5G49490 41.667 72 38 1 3 70 46 117 2.65e-11 60.8

Find 47 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATAAACCTTACTCTTT+TGG 0.260036 8.2:+55874552 MS.gene016289:CDS
GAATACAACAATAACAATTT+TGG 0.284019 8.2:-55874523 None:intergenic
CCATCACCTTCTCATGTTGT+TGG 0.285658 8.2:-55874674 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8.2:-55874638 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8.2:+55874797 MS.gene016289:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8.2:+55874782 MS.gene016289:CDS
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8.2:+55874459 MS.gene016289:CDS
TTCTAGGACATCGTTTAGAT+CGG 0.426926 8.2:-55874622 None:intergenic
GTTCAGATCATCTATGTTAG+AGG 0.427003 8.2:-55874652 None:intergenic
ATCATCTATGTTAGAGGAAG+GGG 0.438239 8.2:-55874646 None:intergenic
GTTATTGTTGTATTCTCTCC+CGG 0.443926 8.2:+55874531 MS.gene016289:CDS
TGATATAGCTGAGGCTGAAA+AGG 0.444985 8.2:+55874698 MS.gene016289:CDS
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8.2:-55874773 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8.2:-55874550 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.460805 8.2:-55874441 None:intergenic
TCTAGGACATCGTTTAGATC+GGG 0.468128 8.2:-55874621 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8.2:+55874458 MS.gene016289:CDS
CTCGCAAAGGAGCCCGTGGT+TGG 0.507286 8.2:+55874867 MS.gene016289:CDS
CTAGGGTGGCCAAAAGAGTA+AGG 0.515417 8.2:-55874561 None:intergenic
AATGAATCTTTCCATTCCTT+AGG 0.516915 8.2:-55874777 None:intergenic
TATGCTAAAAGAATACAAAT+CGG 0.519499 8.2:+55874740 MS.gene016289:CDS
AGATTCATTAATGGAGCTCA+AGG 0.527990 8.2:+55874791 MS.gene016289:CDS
TGAGGCTGAAAAGGAAGATA+AGG 0.530489 8.2:+55874707 MS.gene016289:CDS
AACGAGCTTGCCATCTTGTG+TGG 0.537015 8.2:+55874498 MS.gene016289:CDS
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8.2:-55874549 None:intergenic
ACAATTAACTCATTATGGGT+CGG 0.550393 8.2:+55874388 None:intergenic
GGCACTACTCAGCCAGCCTA+AGG 0.550629 8.2:+55874761 MS.gene016289:CDS
CTCCTTTGCGAGGAGCATCA+TGG 0.550709 8.2:-55874856 None:intergenic
TTATTGTTGTATTCTCTCCC+GGG 0.551946 8.2:+55874532 MS.gene016289:CDS
CAACCACGGGCTCCTTTGCG+AGG 0.553129 8.2:-55874866 None:intergenic
AGATCATCTATGTTAGAGGA+AGG 0.556275 8.2:-55874648 None:intergenic
GATCATCTATGTTAGAGGAA+GGG 0.557711 8.2:-55874647 None:intergenic
AACCAAGTCACAGAAAAGAA+AGG 0.564249 8.2:+55874897 MS.gene016289:CDS
TACTCAGCCAGCCTAAGGAA+TGG 0.566847 8.2:+55874766 MS.gene016289:CDS
GCTCCTCGCAAAGGAGCCCG+TGG 0.600673 8.2:+55874863 MS.gene016289:CDS
GTCCATGATGCTCCTCGCAA+AGG 0.601271 8.2:+55874854 MS.gene016289:CDS
GACGCAATAACATCAACACT+AGG 0.604270 8.2:-55874579 None:intergenic
GGGTCGGCGCAAAATTGAGA+TGG 0.616384 8.2:+55874404 MS.gene016289:CDS
TCTGAACCAACAACATGAGA+AGG 0.616384 8.2:+55874668 MS.gene016289:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.628479 8.2:+55874499 MS.gene016289:CDS
GCGCAAAATTGAGATGGCGA+TGG 0.635830 8.2:+55874410 MS.gene016289:CDS
AAAGGAAGATAAGGCCAATG+AGG 0.641735 8.2:+55874716 MS.gene016289:CDS
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8.2:+55874460 MS.gene016289:CDS
ACGCAATAACATCAACACTA+GGG 0.661050 8.2:-55874578 None:intergenic
CAATAACATCAACACTAGGG+TGG 0.691090 8.2:-55874575 None:intergenic
CCAACAACATGAGAAGGTGA+TGG 0.695579 8.2:+55874674 MS.gene016289:CDS
GGTGATGGCTGATATAGCTG+AGG 0.696275 8.2:+55874689 MS.gene016289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTAAAAGAATACAAAT+CGG + chr8.2:55874740-55874759 MS.gene016289:CDS 20.0%
!!! GAATACAACAATAACAATTT+TGG - chr8.2:55874526-55874545 None:intergenic 20.0%
AAAAGAGTAAGGTTTATTCC+CGG - chr8.2:55874553-55874572 None:intergenic 30.0%
AATGAATCTTTCCATTCCTT+AGG - chr8.2:55874780-55874799 None:intergenic 30.0%
GGAATGGAAAGATTCATTAA+TGG + chr8.2:55874782-55874801 MS.gene016289:CDS 30.0%
! TTCTTTTAGCATATCCTCAT+TGG - chr8.2:55874733-55874752 None:intergenic 30.0%
!! TTGGTTTTTAATTCCAACCA+CGG - chr8.2:55874883-55874902 None:intergenic 30.0%
!!! CTTTTTTGAATAACCCCATT+CGG - chr8.2:55874476-55874495 None:intergenic 30.0%
AAAGAGTAAGGTTTATTCCC+GGG - chr8.2:55874552-55874571 None:intergenic 35.0%
AACCAAGTCACAGAAAAGAA+AGG + chr8.2:55874897-55874916 MS.gene016289:CDS 35.0%
ACGCAATAACATCAACACTA+GGG - chr8.2:55874581-55874600 None:intergenic 35.0%
AGATCATCTATGTTAGAGGA+AGG - chr8.2:55874651-55874670 None:intergenic 35.0%
AGATTCATTAATGGAGCTCA+AGG + chr8.2:55874791-55874810 MS.gene016289:CDS 35.0%
ATCATCTATGTTAGAGGAAG+GGG - chr8.2:55874649-55874668 None:intergenic 35.0%
ATTAATGGAGCTCAAGGATA+TGG + chr8.2:55874797-55874816 MS.gene016289:CDS 35.0%
GATCATCTATGTTAGAGGAA+GGG - chr8.2:55874650-55874669 None:intergenic 35.0%
GTTATTGTTGTATTCTCTCC+CGG + chr8.2:55874531-55874550 MS.gene016289:CDS 35.0%
GTTCAGATCATCTATGTTAG+AGG - chr8.2:55874655-55874674 None:intergenic 35.0%
TTATTGTTGTATTCTCTCCC+GGG + chr8.2:55874532-55874551 MS.gene016289:CDS 35.0%
! GGGAATAAACCTTACTCTTT+TGG + chr8.2:55874552-55874571 MS.gene016289:CDS 35.0%
! TTCCTTTCTTTTCTGTGACT+TGG - chr8.2:55874902-55874921 None:intergenic 35.0%
!! TGGTTTTTAATTCCAACCAC+GGG - chr8.2:55874882-55874901 None:intergenic 35.0%
!! TTCTAGGACATCGTTTAGAT+CGG - chr8.2:55874625-55874644 None:intergenic 35.0%
AAAGGAAGATAAGGCCAATG+AGG + chr8.2:55874716-55874735 MS.gene016289:CDS 40.0%
AATCTTTCCATTCCTTAGGC+TGG - chr8.2:55874776-55874795 None:intergenic 40.0%
CAATAACATCAACACTAGGG+TGG - chr8.2:55874578-55874597 None:intergenic 40.0%
GACGCAATAACATCAACACT+AGG - chr8.2:55874582-55874601 None:intergenic 40.0%
TCTGAACCAACAACATGAGA+AGG + chr8.2:55874668-55874687 MS.gene016289:CDS 40.0%
TGAGGCTGAAAAGGAAGATA+AGG + chr8.2:55874707-55874726 MS.gene016289:CDS 40.0%
TGATATAGCTGAGGCTGAAA+AGG + chr8.2:55874698-55874717 MS.gene016289:CDS 40.0%
! TCTAGGACATCGTTTAGATC+GGG - chr8.2:55874624-55874643 None:intergenic 40.0%
!! AATTTTGGTCCCACACAAGA+TGG - chr8.2:55874511-55874530 None:intergenic 40.0%
CCAACAACATGAGAAGGTGA+TGG + chr8.2:55874674-55874693 MS.gene016289:CDS 45.0%
CCATCACCTTCTCATGTTGT+TGG - chr8.2:55874677-55874696 None:intergenic 45.0%
TGTTAGAGGAAGGGGTTTCT+AGG - chr8.2:55874641-55874660 None:intergenic 45.0%
!! ACATTCTCAAAGCGCCGAAT+GGG + chr8.2:55874459-55874478 MS.gene016289:CDS 45.0%
AACGAGCTTGCCATCTTGTG+TGG + chr8.2:55874498-55874517 MS.gene016289:CDS 50.0%
ACGAGCTTGCCATCTTGTGT+GGG + chr8.2:55874499-55874518 MS.gene016289:CDS 50.0%
CTAGGGTGGCCAAAAGAGTA+AGG - chr8.2:55874564-55874583 None:intergenic 50.0%
GCGCAAAATTGAGATGGCGA+TGG + chr8.2:55874410-55874429 MS.gene016289:CDS 50.0%
GGCGATGGTGAAAAAACCAG+AGG + chr8.2:55874425-55874444 MS.gene016289:CDS 50.0%
TACTCAGCCAGCCTAAGGAA+TGG + chr8.2:55874766-55874785 MS.gene016289:CDS 50.0%
! AATGTGACTTGTCTCGCCTC+TGG - chr8.2:55874444-55874463 None:intergenic 50.0%
! GGTGATGGCTGATATAGCTG+AGG + chr8.2:55874689-55874708 MS.gene016289:CDS 50.0%
!! CACATTCTCAAAGCGCCGAA+TGG + chr8.2:55874458-55874477 MS.gene016289:CDS 50.0%
!! CATTCTCAAAGCGCCGAATG+GGG + chr8.2:55874460-55874479 MS.gene016289:CDS 50.0%
GGGTCGGCGCAAAATTGAGA+TGG + chr8.2:55874404-55874423 MS.gene016289:CDS 55.0%
GTCCATGATGCTCCTCGCAA+AGG + chr8.2:55874854-55874873 MS.gene016289:CDS 55.0%
!! CTCCTTTGCGAGGAGCATCA+TGG - chr8.2:55874859-55874878 None:intergenic 55.0%
GGCACTACTCAGCCAGCCTA+AGG + chr8.2:55874761-55874780 MS.gene016289:CDS 60.0%
CAACCACGGGCTCCTTTGCG+AGG - chr8.2:55874869-55874888 None:intergenic 65.0%
CTCGCAAAGGAGCCCGTGGT+TGG + chr8.2:55874867-55874886 MS.gene016289:CDS 65.0%
GCTCCTCGCAAAGGAGCCCG+TGG + chr8.2:55874863-55874882 MS.gene016289:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 55874402 55874929 55874402 ID=MS.gene016289
chr8.2 mRNA 55874402 55874929 55874402 ID=MS.gene016289.t1;Parent=MS.gene016289
chr8.2 exon 55874402 55874929 55874402 ID=MS.gene016289.t1.exon1;Parent=MS.gene016289.t1
chr8.2 CDS 55874402 55874929 55874402 ID=cds.MS.gene016289.t1;Parent=MS.gene016289.t1
Gene Sequence

>MS.gene016289

ATGGGTCGGCGCAAAATTGAGATGGCGATGGTGAAAAAACCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGACCAAAATTGTTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTAGTGTTGATGTTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTCCTAGAAACCCCTTCCTCTAACATAGATGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGATATGCTAAAAGAATACAAATCGGCACTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTTGTGATTTAGATATATCACAGTCCATGATGCTCCTCGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGTCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>MS.gene016289.t1

MGRRKIEMAMVKKPEARQVTFSKRRMGLFKKANELAILCGTKIVIVVFSPGNKPYSFGHPSVDVIASKFLQQEPDLNDVLETPSSNIDDLNQQHEKVMADIAEAEKEDKANEDMLKEYKSALLSQPKEWKDSLMELKDMVKSRLCDLDISQSMMLLAKEPVVGIKNQVTEKKGKY