AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016376

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016376.t1 MTR_8g043960 92.905 296 12 1 1 296 1 287 0.0 537
MS.gene016376.t1 MTR_3g010660 64.646 297 98 4 6 296 1 296 6.09e-132 377
MS.gene016376.t1 MTR_7g088090 47.059 306 131 8 6 294 1 292 3.08e-74 230
MS.gene016376.t1 MTR_6g026800 49.836 305 127 7 6 295 1 294 1.26e-72 226
MS.gene016376.t1 MTR_4g085910 35.072 345 142 11 23 298 17 348 2.82e-47 162
MS.gene016376.t1 MTR_7g104480 35.260 346 141 11 30 294 45 388 3.17e-36 134
MS.gene016376.t1 MTR_5g088230 55.629 151 60 3 1 148 1 147 2.33e-35 129
MS.gene016376.t1 MTR_5g088230 66.129 62 20 1 235 296 183 243 1.70e-16 78.2
MS.gene016376.t1 MTR_5g088230 54.795 146 59 3 6 148 1 142 2.81e-32 120
MS.gene016376.t1 MTR_5g088230 66.129 62 20 1 235 296 178 238 1.72e-16 77.8
MS.gene016376.t1 MTR_3g101780 48.951 143 63 4 12 151 14 149 7.64e-31 120
MS.gene016376.t1 MTR_3g101780 62.857 70 23 1 229 298 333 399 5.19e-17 81.3
MS.gene016376.t1 MTR_2g086390 35.354 297 125 13 27 298 11 265 2.01e-30 116
MS.gene016376.t1 MTR_2g086390 35.088 285 126 12 27 294 11 253 2.30e-30 116
MS.gene016376.t1 MTR_2g086340 35.231 281 150 9 26 294 24 284 2.86e-30 116
MS.gene016376.t1 MTR_5g060990 31.667 300 158 10 16 273 4 298 9.83e-25 101
MS.gene016376.t1 MTR_4g094390 57.377 61 26 0 238 298 117 177 9.84e-13 66.2
MS.gene016376.t1 MTR_7g015990 70.588 51 12 1 251 298 120 170 9.72e-12 63.2
MS.gene016376.t1 MTR_5g022780 61.667 60 11 1 251 298 166 225 1.55e-11 63.5
MS.gene016376.t1 MTR_1g098590 62.264 53 20 0 246 298 157 209 1.78e-11 63.2
MS.gene016376.t1 MTR_1g098590 62.264 53 20 0 246 298 157 209 1.96e-11 62.8
MS.gene016376.t1 MTR_1g098590 62.264 53 20 0 246 298 157 209 2.96e-11 62.8
MS.gene016376.t1 MTR_8g075130 58.182 55 20 1 243 294 97 151 4.01e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016376.t1 AT3G56850 54.480 279 100 8 23 296 15 271 9.21e-78 239
MS.gene016376.t1 AT2G41070 48.929 280 83 9 23 298 15 238 1.95e-66 208
MS.gene016376.t1 AT2G41070 49.281 278 81 9 23 296 15 236 2.52e-65 206
MS.gene016376.t1 AT2G41070 49.281 278 81 9 23 296 15 236 2.52e-65 206
MS.gene016376.t1 AT2G41070 49.281 278 81 9 23 296 15 236 2.52e-65 206
MS.gene016376.t1 AT2G41070 49.281 278 81 9 23 296 24 245 3.07e-65 206
MS.gene016376.t1 AT2G36270 33.858 381 138 12 23 296 36 409 9.98e-38 139
MS.gene016376.t1 AT2G36270 33.858 381 138 12 23 296 36 409 9.98e-38 139
MS.gene016376.t1 AT2G36270 33.858 381 138 12 23 296 36 409 3.16e-37 137
MS.gene016376.t1 AT3G44460 39.860 286 124 13 26 294 37 291 1.64e-30 117
MS.gene016376.t1 AT3G19290 47.143 140 55 3 24 144 34 173 2.41e-26 107
MS.gene016376.t1 AT3G19290 47.143 140 55 3 24 144 34 173 2.79e-26 107
MS.gene016376.t1 AT3G19290 58.730 63 23 1 236 298 340 399 1.96e-14 73.6
MS.gene016376.t1 AT3G19290 47.143 140 55 3 24 144 34 173 3.97e-26 107
MS.gene016376.t1 AT3G19290 64.151 53 19 0 246 298 347 399 3.03e-14 73.2
MS.gene016376.t1 AT3G19290 47.143 140 55 3 24 144 34 173 4.17e-26 107
MS.gene016376.t1 AT3G19290 64.151 53 19 0 246 298 347 399 3.05e-14 73.2
MS.gene016376.t1 AT3G19290 47.143 140 55 3 24 144 34 173 4.17e-26 107
MS.gene016376.t1 AT3G19290 64.151 53 19 0 246 298 347 399 3.05e-14 73.2
MS.gene016376.t1 AT4G34000 39.752 161 57 3 24 144 27 187 2.66e-24 102
MS.gene016376.t1 AT4G34000 64.062 64 22 1 234 297 357 419 6.79e-17 80.9
MS.gene016376.t1 AT4G34000 39.752 161 57 3 24 144 27 187 2.84e-24 102
MS.gene016376.t1 AT4G34000 64.615 65 22 1 234 298 357 420 3.40e-17 82.0
MS.gene016376.t1 AT4G34000 39.752 161 57 3 24 144 27 187 2.84e-24 102
MS.gene016376.t1 AT4G34000 64.615 65 22 1 234 298 357 420 3.40e-17 82.0
MS.gene016376.t1 AT4G34000 39.752 161 57 3 24 144 27 187 2.84e-24 102
MS.gene016376.t1 AT4G34000 64.615 65 22 1 234 298 357 420 3.40e-17 82.0
MS.gene016376.t1 AT5G42910 29.598 348 148 14 23 298 19 341 1.01e-23 99.8
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 8.34e-22 94.4
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 8.34e-22 94.4
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 36 168 1.76e-21 94.0
MS.gene016376.t1 AT1G45249 67.213 61 16 1 236 296 341 397 1.32e-16 80.1
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 36 168 1.76e-21 94.0
MS.gene016376.t1 AT1G45249 67.213 61 16 1 236 296 341 397 1.32e-16 80.1
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 1.82e-21 94.0
MS.gene016376.t1 AT1G45249 67.213 61 16 1 236 296 326 382 1.18e-16 80.1
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 2.07e-21 93.6
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 2.07e-21 93.6
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 2.07e-21 93.6
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 2.07e-21 93.6
MS.gene016376.t1 AT1G45249 41.912 136 61 3 24 144 21 153 2.53e-21 93.6
MS.gene016376.t1 AT1G45249 56.944 72 16 2 236 296 326 393 8.01e-14 71.6
MS.gene016376.t1 AT5G44080 32.323 198 89 6 100 294 120 275 5.37e-16 77.4
MS.gene016376.t1 AT4G35900 60.656 61 22 1 236 296 202 260 1.33e-14 73.2
MS.gene016376.t1 AT1G49720 61.905 63 21 1 236 298 300 359 5.64e-14 72.0
MS.gene016376.t1 AT1G49720 61.905 63 21 1 236 298 300 359 5.64e-14 72.0
MS.gene016376.t1 AT1G49720 61.905 63 21 1 236 298 300 359 5.86e-14 72.0
MS.gene016376.t1 AT2G17770 60.345 58 21 1 236 293 112 167 6.30e-13 66.6
MS.gene016376.t1 AT1G03970 31.034 203 76 6 100 294 85 231 1.31e-11 64.3

Find 78 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTGGGTGCACCTCTTA+TGG 0.223647 8.2:-57364849 MS.gene016376:CDS
GATGACATTGGAGGATTTCT+TGG 0.266914 8.2:-57365119 MS.gene016376:CDS
GATGAAGTTCAAAATCAATT+AGG 0.300260 8.2:-57365400 MS.gene016376:CDS
AAGGAGCACTCCGGAGGATA+TGG 0.328607 8.2:-57364792 MS.gene016376:CDS
CAAAATCAATTAGGTGACTT+AGG 0.335660 8.2:-57365391 MS.gene016376:CDS
CGCAGATGCCTGGAAGAAAA+AGG 0.341085 8.2:-57364811 MS.gene016376:CDS
CTGTTTCCGTGCTCTTGAAC+GGG 0.379424 8.2:+57364712 None:intergenic
GCCTTCATTGTCCGTATTCG+TGG 0.383060 8.2:+57365300 None:intergenic
CGAGAGAGACAAACTACTTT+AGG 0.394062 8.2:-57365145 MS.gene016376:CDS
CCGTTCAAGAGCACGGAAAC+AGG 0.394263 8.2:-57364711 MS.gene016376:intron
GGCTTACACAAATGAATTAG+AGG 0.404750 8.2:-57364581 MS.gene016376:CDS
GCATTGGGTGCACCTCTTAT+GGG 0.408513 8.2:-57364848 MS.gene016376:CDS
CATTGTCCGTATTCGTGGAC+TGG 0.421785 8.2:+57365305 None:intergenic
AGAAGACTGTGGATGAGGTT+TGG 0.422682 8.2:-57365210 MS.gene016376:CDS
TCCATTTGCAGATAGTCATA+TGG 0.424335 8.2:-57364870 MS.gene016376:CDS
TCTAGGTTCATACTGCTTAG+TGG 0.432596 8.2:+57365364 None:intergenic
AAAATCAATTAGGTGACTTA+GGG 0.436185 8.2:-57365390 MS.gene016376:CDS
AGTATCACAGTTTCCTCTGC+AGG 0.436415 8.2:-57365017 MS.gene016376:CDS
TGCAGATAGTCATATGGCAT+TGG 0.439737 8.2:-57364864 MS.gene016376:CDS
AGAAAAGGATGATCAAGAAT+CGG 0.457820 8.2:-57364745 MS.gene016376:CDS
CTGTTGAGAGAAGGCAGAAA+AGG 0.461801 8.2:-57364760 MS.gene016376:CDS
CCTGTTTCCGTGCTCTTGAA+CGG 0.468292 8.2:+57364711 None:intergenic
GCAGATAGTCATATGGCATT+GGG 0.469189 8.2:-57364863 MS.gene016376:CDS
GTGTCAGATACGCAGATGCC+TGG 0.469471 8.2:-57364821 MS.gene016376:CDS
TCTGACACAGTTCCCATAAG+AGG 0.474734 8.2:+57364836 None:intergenic
TAAATGGGAACTCAGACAAT+GGG 0.478433 8.2:-57365508 MS.gene016376:CDS
GCAGCCGTAGTATCGGTATT+CGG 0.482465 8.2:+57365058 None:intergenic
GAGGATTTCTTGGTGAAAGC+AGG 0.483426 8.2:-57365109 MS.gene016376:CDS
GCCATATGACTATCTGCAAA+TGG 0.484742 8.2:+57364869 None:intergenic
GGGTCTCAAGGTGGTGGAGA+TGG 0.487387 8.2:-57365487 MS.gene016376:CDS
CAGCAAGAAGACTGTGGATG+AGG 0.491713 8.2:-57365215 MS.gene016376:CDS
ATAAATGGGAACTCAGACAA+TGG 0.492628 8.2:-57365509 None:intergenic
TGATACTGCCACATTTGAAT+CGG 0.495093 8.2:+57365033 None:intergenic
GGGGATTTATATGCCTAGCC+AGG 0.498570 8.2:-57364939 MS.gene016376:CDS
TAAAGTTTCACGCCTGGAAG+AGG 0.502778 8.2:-57364557 MS.gene016376:CDS
TTTAGGCGAGATGACATTGG+AGG 0.507134 8.2:-57365128 MS.gene016376:CDS
CATGGGGTCAGGTGCTTCGA+TGG 0.509798 8.2:-57364897 MS.gene016376:CDS
CAGCCGTTACACATGGGGTC+AGG 0.519930 8.2:-57364908 MS.gene016376:CDS
GAAAAGGATGATCAAGAATC+GGG 0.521274 8.2:-57364744 MS.gene016376:CDS
ACTCAGACAATGGGGTCTCA+AGG 0.525496 8.2:-57365499 MS.gene016376:CDS
TGTTGTAGATGCTGATATTG+TGG 0.526222 8.2:+57364971 None:intergenic
CAAGGTGGTGGAGATGGTAG+TGG 0.530920 8.2:-57365481 MS.gene016376:CDS
GCATCTACAACAAAGTTCCA+TGG 0.531471 8.2:-57364960 MS.gene016376:CDS
GGTGAACCAGTCCACGAATA+CGG 0.535449 8.2:-57365311 MS.gene016376:CDS
GTCTTCTCCACCATATCCTC+CGG 0.535473 8.2:+57364782 None:intergenic
TGAAATGCTGAGGAAAAGAA+AGG 0.539855 8.2:-57364530 MS.gene016376:intron
AGTTTCCTCTGCAGGGTCAG+TGG 0.540111 8.2:-57365009 MS.gene016376:CDS
AGAGGTTAAAGTTTCACGCC+TGG 0.543773 8.2:-57364563 MS.gene016376:CDS
TACTTTAGGCGAGATGACAT+TGG 0.549934 8.2:-57365131 MS.gene016376:CDS
CATCTACAACAAAGTTCCAT+GGG 0.551430 8.2:-57364959 MS.gene016376:CDS
AGATGCTGATATTGTGGTTG+CGG 0.557999 8.2:+57364977 None:intergenic
ACAATGGGGTCTCAAGGTGG+TGG 0.565619 8.2:-57365493 MS.gene016376:CDS
TCCACGAATACGGACAATGA+AGG 0.580287 8.2:-57365301 MS.gene016376:CDS
TAAACCGAATACCGATACTA+CGG 0.583628 8.2:-57365062 MS.gene016376:CDS
CTGCTGCCCGTTCAAGAGCA+CGG 0.591970 8.2:-57364718 MS.gene016376:CDS
TATAGCACAGCCGTTACACA+TGG 0.595784 8.2:-57364915 MS.gene016376:CDS
TGGAGAAGACTGTTGAGAGA+AGG 0.597925 8.2:-57364769 MS.gene016376:CDS
GAGCACTCCGGAGGATATGG+TGG 0.597936 8.2:-57364789 MS.gene016376:CDS
ATCGGCCGCAGCCGTAGTAT+CGG 0.598147 8.2:+57365051 None:intergenic
GTGGAGATGGTAGTGGAAGA+CGG 0.609087 8.2:-57365474 MS.gene016376:CDS
GCACCTGACCCCATGTGTAA+CGG 0.611183 8.2:+57364905 None:intergenic
GTATCACAGTTTCCTCTGCA+GGG 0.615727 8.2:-57365016 MS.gene016376:CDS
GGCTGTGCTATACCCTGGCT+AGG 0.624273 8.2:+57364926 None:intergenic
AAGAGGAAAATGAAATGCTG+AGG 0.635284 8.2:-57364540 MS.gene016376:CDS
GGCTGCGGCCGATTCAAATG+TGG 0.639880 8.2:-57365041 MS.gene016376:CDS
GGGATTTATATGCCTAGCCA+GGG 0.641870 8.2:-57364938 MS.gene016376:CDS
TGTAACCACTGACCCTGCAG+AGG 0.647637 8.2:+57365004 None:intergenic
GAATACCGATACTACGGCTG+CGG 0.648846 8.2:-57365056 MS.gene016376:CDS
GCTAGGCATATAAATCCCCA+TGG 0.652039 8.2:+57364943 None:intergenic
CACAACTCCACTCTCTTGTG+CGG 0.662375 8.2:-57365450 MS.gene016376:CDS
TAGCACAGCCGTTACACATG+GGG 0.677657 8.2:-57364913 MS.gene016376:CDS
CAGACAATGGGGTCTCAAGG+TGG 0.688721 8.2:-57365496 MS.gene016376:CDS
GTAACGGCTGTGCTATACCC+TGG 0.689448 8.2:+57364921 None:intergenic
ATAGCACAGCCGTTACACAT+GGG 0.689708 8.2:-57364914 MS.gene016376:CDS
TGCATTCAGCAAGAAGACTG+TGG 0.700030 8.2:-57365221 MS.gene016376:CDS
AAATGGGAACTCAGACAATG+GGG 0.712282 8.2:-57365507 MS.gene016376:CDS
ATCTACAACAAAGTTCCATG+GGG 0.739377 8.2:-57364958 MS.gene016376:CDS
CCAACAAAAGAAAGACAACG+AGG 0.748926 8.2:-57365179 MS.gene016376:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAACCAATCAAATAATA+AGG + chr8.2:57365303-57365322 None:intergenic 20.0%
! AAAATCAATTAGGTGACTTA+GGG - chr8.2:57364557-57364576 MS.gene016376:CDS 25.0%
! GAATAATTGCTTTAACAAAC+AGG - chr8.2:57365345-57365364 MS.gene016376:CDS 25.0%
! GATGAAGTTCAAAATCAATT+AGG - chr8.2:57364547-57364566 MS.gene016376:CDS 25.0%
!! AAAGCAATTATTCAGGTTTA+CGG + chr8.2:57365338-57365357 None:intergenic 25.0%
!! GTTTGTTAAAGCAATTATTC+AGG + chr8.2:57365345-57365364 None:intergenic 25.0%
AGAAAAGGATGATCAAGAAT+CGG - chr8.2:57365202-57365221 MS.gene016376:CDS 30.0%
CAAAATCAATTAGGTGACTT+AGG - chr8.2:57364556-57364575 MS.gene016376:CDS 30.0%
GCAAGTCCTTATTATTTGAT+TGG - chr8.2:57365294-57365313 MS.gene016376:CDS 30.0%
AAGAGGAAAATGAAATGCTG+AGG - chr8.2:57365407-57365426 MS.gene016376:CDS 35.0%
ATCTACAACAAAGTTCCATG+GGG - chr8.2:57364989-57365008 MS.gene016376:CDS 35.0%
CATCTACAACAAAGTTCCAT+GGG - chr8.2:57364988-57365007 MS.gene016376:CDS 35.0%
GAAAAGGATGATCAAGAATC+GGG - chr8.2:57365203-57365222 MS.gene016376:CDS 35.0%
GGCTTACACAAATGAATTAG+AGG - chr8.2:57365366-57365385 MS.gene016376:CDS 35.0%
TAAACCGAATACCGATACTA+CGG - chr8.2:57364885-57364904 MS.gene016376:CDS 35.0%
TCCATTTGCAGATAGTCATA+TGG - chr8.2:57365077-57365096 MS.gene016376:CDS 35.0%
TGAAATGCTGAGGAAAAGAA+AGG - chr8.2:57365417-57365436 MS.gene016376:CDS 35.0%
TGATACTGCCACATTTGAAT+CGG + chr8.2:57364917-57364936 None:intergenic 35.0%
TGTTGTAGATGCTGATATTG+TGG + chr8.2:57364979-57364998 None:intergenic 35.0%
! ACGAGCTTCTGAAAAATGTA+TGG - chr8.2:57364605-57364624 MS.gene016376:intron 35.0%
! GAAAAATGTATGGACTGTTG+AGG - chr8.2:57364615-57364634 MS.gene016376:intron 35.0%
AGATGCTGATATTGTGGTTG+CGG + chr8.2:57364973-57364992 None:intergenic 40.0%
CCAACAAAAGAAAGACAACG+AGG - chr8.2:57364768-57364787 MS.gene016376:CDS 40.0%
CGAGAGAGACAAACTACTTT+AGG - chr8.2:57364802-57364821 MS.gene016376:CDS 40.0%
GATGACATTGGAGGATTTCT+TGG - chr8.2:57364828-57364847 MS.gene016376:CDS 40.0%
GCAGATAGTCATATGGCATT+GGG - chr8.2:57365084-57365103 MS.gene016376:CDS 40.0%
GCATCTACAACAAAGTTCCA+TGG - chr8.2:57364987-57365006 MS.gene016376:CDS 40.0%
GCCATATGACTATCTGCAAA+TGG + chr8.2:57365081-57365100 None:intergenic 40.0%
TACTCAATCTGGGGAATGAA+AGG + chr8.2:57365507-57365526 None:intergenic 40.0%
TACTTTAGGCGAGATGACAT+TGG - chr8.2:57364816-57364835 MS.gene016376:CDS 40.0%
TCTAGGTTCATACTGCTTAG+TGG + chr8.2:57364586-57364605 None:intergenic 40.0%
TCTGGGGAATGAAAGGAATT+AGG + chr8.2:57365500-57365519 None:intergenic 40.0%
TGCAGATAGTCATATGGCAT+TGG - chr8.2:57365083-57365102 MS.gene016376:CDS 40.0%
! CCTCGTTGTCTTTCTTTTGT+TGG + chr8.2:57364771-57364790 None:intergenic 40.0%
! GCATTTCATTTTCCTCTTCC+AGG + chr8.2:57365405-57365424 None:intergenic 40.0%
!! CATTTTTCAGAAGCTCGTCT+AGG + chr8.2:57364603-57364622 None:intergenic 40.0%
AGAAGACTGTGGATGAGGTT+TGG - chr8.2:57364737-57364756 MS.gene016376:CDS 45.0%
AGAGGTTAAAGTTTCACGCC+TGG - chr8.2:57365384-57365403 MS.gene016376:CDS 45.0%
AGTATCACAGTTTCCTCTGC+AGG - chr8.2:57364930-57364949 MS.gene016376:CDS 45.0%
ATAGCACAGCCGTTACACAT+GGG - chr8.2:57365033-57365052 MS.gene016376:CDS 45.0%
CTGTTGAGAGAAGGCAGAAA+AGG - chr8.2:57365187-57365206 MS.gene016376:CDS 45.0%
GAGGATTTCTTGGTGAAAGC+AGG - chr8.2:57364838-57364857 MS.gene016376:CDS 45.0%
GCTAGGCATATAAATCCCCA+TGG + chr8.2:57365007-57365026 None:intergenic 45.0%
GGGATTTATATGCCTAGCCA+GGG - chr8.2:57365009-57365028 MS.gene016376:CDS 45.0%
GTATCACAGTTTCCTCTGCA+GGG - chr8.2:57364931-57364950 MS.gene016376:CDS 45.0%
TAAAGTTTCACGCCTGGAAG+AGG - chr8.2:57365390-57365409 MS.gene016376:CDS 45.0%
TATAGCACAGCCGTTACACA+TGG - chr8.2:57365032-57365051 MS.gene016376:CDS 45.0%
TCCACGAATACGGACAATGA+AGG - chr8.2:57364646-57364665 MS.gene016376:intron 45.0%
TCTGACACAGTTCCCATAAG+AGG + chr8.2:57365114-57365133 None:intergenic 45.0%
TGCATTCAGCAAGAAGACTG+TGG - chr8.2:57364726-57364745 MS.gene016376:CDS 45.0%
TGGAGAAGACTGTTGAGAGA+AGG - chr8.2:57365178-57365197 MS.gene016376:CDS 45.0%
TTTAGGCGAGATGACATTGG+AGG - chr8.2:57364819-57364838 MS.gene016376:CDS 45.0%
! AATTTTGCCGCACAAGAGAG+TGG + chr8.2:57364507-57364526 None:intergenic 45.0%
!! TGGAAGAAAAAGGAGCACTC+CGG - chr8.2:57365146-57365165 MS.gene016376:CDS 45.0%
ACTCAGACAATGGGGTCTCA+AGG - chr8.2:57364448-57364467 MS.gene016376:intron 50.0%
CACAACTCCACTCTCTTGTG+CGG - chr8.2:57364497-57364516 MS.gene016376:intron 50.0%
CAGCAAGAAGACTGTGGATG+AGG - chr8.2:57364732-57364751 MS.gene016376:CDS 50.0%
CATTGTCCGTATTCGTGGAC+TGG + chr8.2:57364645-57364664 None:intergenic 50.0%
CCTGTTTCCGTGCTCTTGAA+CGG + chr8.2:57365239-57365258 None:intergenic 50.0%
CGCAGATGCCTGGAAGAAAA+AGG - chr8.2:57365136-57365155 MS.gene016376:CDS 50.0%
CTGTTTCCGTGCTCTTGAAC+GGG + chr8.2:57365238-57365257 None:intergenic 50.0%
GAATACCGATACTACGGCTG+CGG - chr8.2:57364891-57364910 MS.gene016376:CDS 50.0%
GCATTGGGTGCACCTCTTAT+GGG - chr8.2:57365099-57365118 MS.gene016376:CDS 50.0%
GCCTTCATTGTCCGTATTCG+TGG + chr8.2:57364650-57364669 None:intergenic 50.0%
GGGGATTTATATGCCTAGCC+AGG - chr8.2:57365008-57365027 MS.gene016376:CDS 50.0%
GGTGAACCAGTCCACGAATA+CGG - chr8.2:57364636-57364655 MS.gene016376:intron 50.0%
GTCTTCTCCACCATATCCTC+CGG + chr8.2:57365168-57365187 None:intergenic 50.0%
TAGCACAGCCGTTACACATG+GGG - chr8.2:57365034-57365053 MS.gene016376:CDS 50.0%
!! AAGAAAAAGGAGCACTCCGG+AGG - chr8.2:57365149-57365168 MS.gene016376:CDS 50.0%
!! GCAGCCGTAGTATCGGTATT+CGG + chr8.2:57364892-57364911 None:intergenic 50.0%
!! GGAGTGCTCCTTTTTCTTCC+AGG + chr8.2:57365147-57365166 None:intergenic 50.0%
!! GTGGAGATGGTAGTGGAAGA+CGG - chr8.2:57364473-57364492 MS.gene016376:intron 50.0%
ACAATGGGGTCTCAAGGTGG+TGG - chr8.2:57364454-57364473 MS.gene016376:intron 55.0%
AGTTTCCTCTGCAGGGTCAG+TGG - chr8.2:57364938-57364957 MS.gene016376:CDS 55.0%
CAGACAATGGGGTCTCAAGG+TGG - chr8.2:57364451-57364470 MS.gene016376:intron 55.0%
GCACCTGACCCCATGTGTAA+CGG + chr8.2:57365045-57365064 None:intergenic 55.0%
GTAACGGCTGTGCTATACCC+TGG + chr8.2:57365029-57365048 None:intergenic 55.0%
GTGTCAGATACGCAGATGCC+TGG - chr8.2:57365126-57365145 MS.gene016376:CDS 55.0%
TGTAACCACTGACCCTGCAG+AGG + chr8.2:57364946-57364965 None:intergenic 55.0%
! CCGTTCAAGAGCACGGAAAC+AGG - chr8.2:57365236-57365255 MS.gene016376:CDS 55.0%
! GGCATTGGGTGCACCTCTTA+TGG - chr8.2:57365098-57365117 MS.gene016376:CDS 55.0%
!! AAGGAGCACTCCGGAGGATA+TGG - chr8.2:57365155-57365174 MS.gene016376:CDS 55.0%
!! CAAGGTGGTGGAGATGGTAG+TGG - chr8.2:57364466-57364485 MS.gene016376:intron 55.0%
ATCGGCCGCAGCCGTAGTAT+CGG + chr8.2:57364899-57364918 None:intergenic 60.0%
CAGCCGTTACACATGGGGTC+AGG - chr8.2:57365039-57365058 MS.gene016376:CDS 60.0%
CATGGGGTCAGGTGCTTCGA+TGG - chr8.2:57365050-57365069 MS.gene016376:CDS 60.0%
CTGCTGCCCGTTCAAGAGCA+CGG - chr8.2:57365229-57365248 MS.gene016376:CDS 60.0%
GAGCACTCCGGAGGATATGG+TGG - chr8.2:57365158-57365177 MS.gene016376:CDS 60.0%
GGCTGTGCTATACCCTGGCT+AGG + chr8.2:57365024-57365043 None:intergenic 60.0%
! GGCTGCGGCCGATTCAAATG+TGG - chr8.2:57364906-57364925 MS.gene016376:CDS 60.0%
!! GGGTCTCAAGGTGGTGGAGA+TGG - chr8.2:57364460-57364479 MS.gene016376:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 57364442 57365527 57364442 ID=MS.gene016376
chr8.2 mRNA 57364442 57365527 57364442 ID=MS.gene016376.t1;Parent=MS.gene016376
chr8.2 exon 57364712 57365527 57364712 ID=MS.gene016376.t1.exon1;Parent=MS.gene016376.t1
chr8.2 CDS 57364712 57365527 57364712 ID=cds.MS.gene016376.t1;Parent=MS.gene016376.t1
chr8.2 exon 57364531 57364602 57364531 ID=MS.gene016376.t1.exon2;Parent=MS.gene016376.t1
chr8.2 CDS 57364531 57364602 57364531 ID=cds.MS.gene016376.t1;Parent=MS.gene016376.t1
chr8.2 exon 57364442 57364450 57364442 ID=MS.gene016376.t1.exon3;Parent=MS.gene016376.t1
chr8.2 CDS 57364442 57364450 57364442 ID=cds.MS.gene016376.t1;Parent=MS.gene016376.t1
Gene Sequence

>MS.gene016376

ATGGGAACTCAGACAATGGGGTCTCAAGGTGGTGGAGATGGTAGTGGAAGACGGTCACAACTCCACTCTCTTGTGCGGCAAAATTCAGTGTACAGTCTCACACTTGATGAAGTTCAAAATCAATTAGGTGACTTAGGGAAGCCACTAAGCAGTATGAACCTAGACGAGCTTCTGAAAAATGTATGGACTGTTGAGGTGAACCAGTCCACGAATACGGACAATGAAGGCACAACGCAATCTAGTGAAGCTTCTCTACAACGTCAAGCTAGTCTTGCATTAAAAGCTGCATTCAGCAAGAAGACTGTGGATGAGGTTTGGAGAGATATCCAACAAAAGAAAGACAACGAGGAAAAGAAGTCACGAGAGAGACAAACTACTTTAGGCGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGTATTGTTGCAGAAGCATCTTCTAATAAACCGAATACCGATACTACGGCTGCGGCCGATTCAAATGTGGCAGTATCACAGTTTCCTCTGCAGGGTCAGTGGTTACAGTATCCGCAACCACAATATCAGCATCTACAACAAAGTTCCATGGGGATTTATATGCCTAGCCAGGGTATAGCACAGCCGTTACACATGGGGTCAGGTGCTTCGATGGAGATTCCATTTGCAGATAGTCATATGGCATTGGGTGCACCTCTTATGGGAACTGTGTCAGATACGCAGATGCCTGGAAGAAAAAGGAGCACTCCGGAGGATATGGTGGAGAAGACTGTTGAGAGAAGGCAGAAAAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGAGCACGGAAACAGGTGATCTCTCTCTCTTTATTTCGAGTGTTGTAACTCGCAAGTCCTTATTATTTGATTGGTTTTTGTTGTAATGAATACCGTAAACCTGAATAATTGCTTTAACAAACAGGCTTACACAAATGAATTAGAGGTTAAAGTTTCACGCCTGGAAGAGGAAAATGAAATGCTGAGGAAAAGAAAGGTTTGATTCTGCTTTGAAATTATAAGTTTAATTGATTTGAGTATGTTTTTATGATGATCCTAATTCCTTTCATTCCCCAGATTGAGTAG
Protein sequence

>MS.gene016376.t1

MGTQTMGSQGGGDGSGRRSQLHSLVRQNSVYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWTVEVNQSTNTDNEGTTQSSEASLQRQASLALKAAFSKKTVDEVWRDIQQKKDNEEKKSRERQTTLGEMTLEDFLVKAGIVAEASSNKPNTDTTAAADSNVAVSQFPLQGQWLQYPQPQYQHLQQSSMGIYMPSQGIAQPLHMGSGASMEIPFADSHMALGAPLMGTVSDTQMPGRKRSTPEDMVEKTVERRQKRMIKNRESAARSRARKQAYTNELEVKVSRLEEENEMLRKRKIE