Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016461.t1 | XP_003612135.1 | 98.7 | 76 | 1 | 0 | 84 | 159 | 1015 | 1090 | 3.80E-33 | 151.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016461.t1 | C0LGS2 | 92.1 | 76 | 6 | 0 | 84 | 159 | 1020 | 1095 | 7.7e-35 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016461.t1 | G7KGF1 | 98.7 | 76 | 1 | 0 | 84 | 159 | 1015 | 1090 | 2.7e-33 | 151.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016461.t1 | MTR_5g021670 | 96.203 | 79 | 3 | 0 | 84 | 162 | 1015 | 1093 | 8.50e-43 | 151 |
| MS.gene016461.t1 | MTR_3g113140 | 80.000 | 80 | 16 | 0 | 84 | 163 | 1033 | 1112 | 3.90e-36 | 132 |
| MS.gene016461.t1 | MTR_5g026740 | 96.296 | 27 | 1 | 0 | 1 | 27 | 1 | 27 | 2.99e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016461.t1 | AT4G36180 | 89.873 | 79 | 8 | 0 | 84 | 162 | 1020 | 1098 | 1.17e-33 | 125 |
| MS.gene016461.t1 | AT1G75640 | 86.842 | 76 | 10 | 0 | 84 | 159 | 1019 | 1094 | 3.49e-31 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGATTTCTTATCCTTTA+TGG | 0.071003 | 8.4:+57407168 | MS.gene016461:CDS |
| TCTCCAGCAAATTCACTTTC+TGG | 0.157114 | 8.4:+57407284 | MS.gene016461:CDS |
| TCTTCCCATTCTGATGATTC+TGG | 0.198688 | 8.4:-57408505 | None:intergenic |
| TCATCTTGTGTGAACATTAC+TGG | 0.281555 | 8.4:-57408400 | None:intergenic |
| CACACGCATCATGGGTTTGC+AGG | 0.299843 | 8.4:+57406312 | None:intergenic |
| GAGTCTGATGTTTACAGCTT+TGG | 0.351452 | 8.4:+57408343 | MS.gene016461:CDS |
| GTGATTCCGTATGGCGATTT+CGG | 0.355120 | 8.4:+57407308 | MS.gene016461:CDS |
| CTTCCCATTCTGATGATTCT+GGG | 0.360548 | 8.4:-57408504 | None:intergenic |
| GATAAGAAATCCTCATTTGA+TGG | 0.374007 | 8.4:-57407160 | None:intergenic |
| CAGCTTTGGCATTGTGTTGT+TGG | 0.377104 | 8.4:+57408357 | MS.gene016461:CDS |
| TTCGGCGCTTCCGATGCTTC+AGG | 0.395526 | 8.4:+57407326 | MS.gene016461:CDS |
| GTGTTGTTGGAACTTCTAAC+AGG | 0.399817 | 8.4:+57408370 | MS.gene016461:CDS |
| AGCTCGAAATTATCACTTAC+CGG | 0.406924 | 8.4:-57407226 | None:intergenic |
| ACTCCAGAAAGTGAATTTGC+TGG | 0.441018 | 8.4:-57407287 | None:intergenic |
| CTTGCTTGTACAATCCATAA+AGG | 0.455824 | 8.4:-57407182 | None:intergenic |
| GGTGAAGAAACAACTTCAAA+GGG | 0.485087 | 8.4:+57408438 | MS.gene016461:CDS |
| AGACCCAGAATCATCAGAAT+GGG | 0.506179 | 8.4:+57408501 | MS.gene016461:CDS |
| TTGGAACTTCTAACAGGAAA+GGG | 0.506454 | 8.4:+57408376 | MS.gene016461:CDS |
| TAGACCCAGAATCATCAGAA+TGG | 0.520121 | 8.4:+57408500 | MS.gene016461:CDS |
| CTTTCTGGAGTGATTCCGTA+TGG | 0.523237 | 8.4:+57407299 | MS.gene016461:CDS |
| TGTAAGAGTCTTGACTTTGG+CGG | 0.532850 | 8.4:-57407131 | None:intergenic |
| GGGTGAAGAAACAACTTCAA+AGG | 0.534035 | 8.4:+57408437 | MS.gene016461:CDS |
| CTCTGTAAGAGTCTTGACTT+TGG | 0.535715 | 8.4:-57407134 | None:intergenic |
| ATAAGAAATCCTCATTTGAT+GGG | 0.539214 | 8.4:-57407159 | None:intergenic |
| GTGACCATCACCTGAAGCAT+CGG | 0.551931 | 8.4:-57407336 | None:intergenic |
| GAGATCTGTCCGACGTAGGA+AGG | 0.555767 | 8.4:-57407265 | None:intergenic |
| TACAGAGAGCCCATCAAATG+AGG | 0.560420 | 8.4:+57407150 | MS.gene016461:CDS |
| TTGTACAAGCAAGCCACTGT+TGG | 0.573384 | 8.4:+57407192 | MS.gene016461:CDS |
| ATAACAGAGTTACTAGAACC+TGG | 0.575865 | 8.4:+57408466 | MS.gene016461:CDS |
| GTTGGAACTTCTAACAGGAA+AGG | 0.578697 | 8.4:+57408375 | MS.gene016461:CDS |
| GGGTCTAATTCAAGTAAACC+AGG | 0.597683 | 8.4:-57408484 | None:intergenic |
| GAAGCGCCGAAATCGCCATA+CGG | 0.621516 | 8.4:-57407314 | None:intergenic |
| AGATGAAGACATTGTGAAGT+GGG | 0.645221 | 8.4:+57408417 | MS.gene016461:CDS |
| AAGATGAAGACATTGTGAAG+TGG | 0.660204 | 8.4:+57408416 | MS.gene016461:CDS |
| ACTCTGTCACCTTCCTACGT+CGG | 0.672917 | 8.4:+57407256 | MS.gene016461:CDS |
| GGTGTCAACATTTCCAACAG+TGG | 0.675818 | 8.4:-57407205 | None:intergenic |
| GCTGGAGATCTGTCCGACGT+AGG | 0.679461 | 8.4:-57407269 | None:intergenic |
| ACTGTTGGAAATGTTGACAC+CGG | 0.698825 | 8.4:+57407207 | MS.gene016461:CDS |
| GTGAAGAAACAACTTCAAAG+GGG | 0.745434 | 8.4:+57408439 | MS.gene016461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTATAAGTAAAAGTAAA+TGG | + | chr8.4:57407049-57407068 | MS.gene016461:intron | 15.0% |
| !! | ACATTTATGATAACAACTAT+TGG | + | chr8.4:57407991-57408010 | MS.gene016461:intron | 20.0% |
| !! | GTTGAAATTGAAACATTATA+TGG | - | chr8.4:57406352-57406371 | None:intergenic | 20.0% |
| !! | TTACTTATAAGTACAATATC+AGG | - | chr8.4:57407042-57407061 | None:intergenic | 20.0% |
| !! | TTGAGAAGTAATAGTTTAAA+TGG | + | chr8.4:57407847-57407866 | MS.gene016461:intron | 20.0% |
| !!! | TATTACTGTGATTTAATTTG+TGG | + | chr8.4:57406500-57406519 | MS.gene016461:intron | 20.0% |
| !!! | TTGAAACATTATATGGATTA+AGG | - | chr8.4:57406345-57406364 | None:intergenic | 20.0% |
| ! | AGCGTAATTAAGAAAAACAA+AGG | - | chr8.4:57406374-57406393 | None:intergenic | 25.0% |
| ! | ATAAGAAATCCTCATTTGAT+GGG | - | chr8.4:57407162-57407181 | None:intergenic | 25.0% |
| ! | ATTCAACATAATAGCATAAG+AGG | + | chr8.4:57407518-57407537 | MS.gene016461:intron | 25.0% |
| ! | GTGACATTTATGATAGTAAT+GGG | + | chr8.4:57407941-57407960 | MS.gene016461:intron | 25.0% |
| ! | TTCAAAATCAACAACACTAA+GGG | - | chr8.4:57407690-57407709 | None:intergenic | 25.0% |
| ! | TTTGAATAGATTAATGCTTC+TGG | + | chr8.4:57407966-57407985 | MS.gene016461:intron | 25.0% |
| ! | TTTGAGAAATTTGACAACTT+TGG | + | chr8.4:57407894-57407913 | MS.gene016461:intron | 25.0% |
| !! | TCAATGTTTCAAGTAAAGAA+AGG | - | chr8.4:57407825-57407844 | None:intergenic | 25.0% |
| !! | TCAGATTGGTAATTTGTAAA+GGG | + | chr8.4:57406744-57406763 | MS.gene016461:intron | 25.0% |
| !! | TTCAGATTGGTAATTTGTAA+AGG | + | chr8.4:57406743-57406762 | MS.gene016461:intron | 25.0% |
| !!! | TGTAAAGGGAAATTTTGATT+CGG | + | chr8.4:57406758-57406777 | MS.gene016461:intron | 25.0% |
| AACATTGCAAAAAACGAAGT+AGG | - | chr8.4:57407391-57407410 | None:intergenic | 30.0% | |
| AAGTGCATTTATCAGATTTC+GGG | + | chr8.4:57408209-57408228 | MS.gene016461:intron | 30.0% | |
| AATCAAATCGTTAGAACAAC+AGG | - | chr8.4:57406872-57406891 | None:intergenic | 30.0% | |
| CTACATTTCATTATTTCCAC+AGG | - | chr8.4:57407665-57407684 | None:intergenic | 30.0% | |
| CTGTGGAAATAATGAAATGT+AGG | + | chr8.4:57407663-57407682 | MS.gene016461:intron | 30.0% | |
| CTTAGTGATAACAAGTTTAG+TGG | + | chr8.4:57407919-57407938 | MS.gene016461:intron | 30.0% | |
| CTTCAAAATCAACAACACTA+AGG | - | chr8.4:57407691-57407710 | None:intergenic | 30.0% | |
| CTTTCTCACAATAATCTTAC+TGG | + | chr8.4:57407358-57407377 | MS.gene016461:intron | 30.0% | |
| GAAGTGCATTTATCAGATTT+CGG | + | chr8.4:57408208-57408227 | MS.gene016461:intron | 30.0% | |
| GATAAGAAATCCTCATTTGA+TGG | - | chr8.4:57407163-57407182 | None:intergenic | 30.0% | |
| GGTGACATTTATGATAGTAA+TGG | + | chr8.4:57407940-57407959 | MS.gene016461:intron | 30.0% | |
| TGAGGATTTCTTATCCTTTA+TGG | + | chr8.4:57407168-57407187 | MS.gene016461:CDS | 30.0% | |
| TTTCACATTGTCGAAAATGT+CGG | - | chr8.4:57407737-57407756 | None:intergenic | 30.0% | |
| ! | AAGATGGTCATGTTCTAAAT+TGG | + | chr8.4:57408071-57408090 | MS.gene016461:intron | 30.0% |
| ! | AATTTAGAACATGACCATCT+TGG | - | chr8.4:57408072-57408091 | None:intergenic | 30.0% |
| ! | ACATTTTCGACAATGTGAAA+GGG | + | chr8.4:57407737-57407756 | MS.gene016461:intron | 30.0% |
| ! | CTATTTAGCATCTATTGACT+TGG | + | chr8.4:57406816-57406835 | MS.gene016461:intron | 30.0% |
| ! | TTTGAAGGAAACAATTTTGC+CGG | + | chr8.4:57407704-57407723 | MS.gene016461:intron | 30.0% |
| ! | TTTGATCTTTCTAGTGAACA+TGG | + | chr8.4:57406929-57406948 | MS.gene016461:intron | 30.0% |
| ! | TTTTTACTAGGTGTGAAAGT+TGG | + | chr8.4:57408529-57408548 | MS.gene016461:CDS | 30.0% |
| !!! | CTTAGTGTTGTTGATTTTGA+AGG | + | chr8.4:57407689-57407708 | MS.gene016461:intron | 30.0% |
| AAGATGAAGACATTGTGAAG+TGG | + | chr8.4:57408416-57408435 | MS.gene016461:CDS | 35.0% | |
| AGAATCACATGCTTTCAGAT+TGG | + | chr8.4:57406730-57406749 | MS.gene016461:intron | 35.0% | |
| AGATGAAGACATTGTGAAGT+GGG | + | chr8.4:57408417-57408436 | MS.gene016461:CDS | 35.0% | |
| AGCTCGAAATTATCACTTAC+CGG | - | chr8.4:57407229-57407248 | None:intergenic | 35.0% | |
| ATAACAGAGTTACTAGAACC+TGG | + | chr8.4:57408466-57408485 | MS.gene016461:CDS | 35.0% | |
| CACTGACAGAATAGTTACAT+TGG | - | chr8.4:57407564-57407583 | None:intergenic | 35.0% | |
| CGATTTGATTCAAAACTGCT+TGG | + | chr8.4:57406882-57406901 | MS.gene016461:intron | 35.0% | |
| CTTGCTTGTACAATCCATAA+AGG | - | chr8.4:57407185-57407204 | None:intergenic | 35.0% | |
| GCTGTAATTTCACTATGCAT+TGG | + | chr8.4:57406677-57406696 | MS.gene016461:intron | 35.0% | |
| GGTGAAGAAACAACTTCAAA+GGG | + | chr8.4:57408438-57408457 | MS.gene016461:CDS | 35.0% | |
| GTGAAGAAACAACTTCAAAG+GGG | + | chr8.4:57408439-57408458 | MS.gene016461:CDS | 35.0% | |
| GTGGCTAATAATTCATTCAC+TGG | + | chr8.4:57407632-57407651 | MS.gene016461:intron | 35.0% | |
| TCATCTTGTGTGAACATTAC+TGG | - | chr8.4:57408403-57408422 | None:intergenic | 35.0% | |
| TGTGCTAATTGATGTTGAAG+TGG | - | chr8.4:57408275-57408294 | None:intergenic | 35.0% | |
| TTGGAACTTCTAACAGGAAA+GGG | + | chr8.4:57408376-57408395 | MS.gene016461:CDS | 35.0% | |
| ! | AGTTACATTGGTTAACCACA+AGG | - | chr8.4:57407552-57407571 | None:intergenic | 35.0% |
| ! | GAATGGGAAGAGTTTTTACT+AGG | + | chr8.4:57408517-57408536 | MS.gene016461:CDS | 35.0% |
| ! | GACATTTTCGACAATGTGAA+AGG | + | chr8.4:57407736-57407755 | MS.gene016461:intron | 35.0% |
| ! | GTTACATTGGTTAACCACAA+GGG | - | chr8.4:57407551-57407570 | None:intergenic | 35.0% |
| ! | TTTGTTGGTTAATGTGATGC+AGG | + | chr8.4:57407090-57407109 | MS.gene016461:intron | 35.0% |
| !! | GAAAGCATCACAGAAAGAAA+TGG | - | chr8.4:57406461-57406480 | None:intergenic | 35.0% |
| !! | TCGATTCATTGGTTCAGTTT+CGG | + | chr8.4:57407786-57407805 | MS.gene016461:intron | 35.0% |
| !! | TCTTTCGAGTATGCATTTTC+CGG | + | chr8.4:57407589-57407608 | MS.gene016461:intron | 35.0% |
| !! | TTTCAGTGTTGTTCAGGTTT+TGG | + | chr8.4:57407493-57407512 | MS.gene016461:intron | 35.0% |
| !! | TTTCGGGTTAGAAAGACTAA+CGG | + | chr8.4:57408225-57408244 | MS.gene016461:intron | 35.0% |
| !! | TTTTGAGGGTTATGGATTGT+AGG | + | chr8.4:57406706-57406725 | MS.gene016461:intron | 35.0% |
| !!! | ATGCATTGGTTGTTCTTTTG+AGG | + | chr8.4:57406691-57406710 | MS.gene016461:intron | 35.0% |
| !!! | TGCATTGGTTGTTCTTTTGA+GGG | + | chr8.4:57406692-57406711 | MS.gene016461:intron | 35.0% |
| AACAACACTGAAACACGTGT+TGG | - | chr8.4:57407486-57407505 | None:intergenic | 40.0% | |
| AAGCTGAACTACCTCAAAGA+CGG | - | chr8.4:57407426-57407445 | None:intergenic | 40.0% | |
| AATGGTTTCACGGATTTCGT+TGG | + | chr8.4:57407452-57407471 | MS.gene016461:intron | 40.0% | |
| ACCAGAAGCAATCTTAACCA+GGG | + | chr8.4:57408309-57408328 | MS.gene016461:intron | 40.0% | |
| ACTCCAGAAAGTGAATTTGC+TGG | - | chr8.4:57407290-57407309 | None:intergenic | 40.0% | |
| ACTGTTGGAAATGTTGACAC+CGG | + | chr8.4:57407207-57407226 | MS.gene016461:CDS | 40.0% | |
| AGACCCAGAATCATCAGAAT+GGG | + | chr8.4:57408501-57408520 | MS.gene016461:CDS | 40.0% | |
| AGTGTTGCAAGGTTTCCATT+GGG | - | chr8.4:57408031-57408050 | None:intergenic | 40.0% | |
| CTCTGTAAGAGTCTTGACTT+TGG | - | chr8.4:57407137-57407156 | None:intergenic | 40.0% | |
| CTGCTTGGTTAATCTTAAGC+AGG | + | chr8.4:57406897-57406916 | MS.gene016461:intron | 40.0% | |
| CTTCATACACCAATCCACAA+TGG | + | chr8.4:57408138-57408157 | MS.gene016461:intron | 40.0% | |
| CTTCCCATTCTGATGATTCT+GGG | - | chr8.4:57408507-57408526 | None:intergenic | 40.0% | |
| GAGTCTGATGTTTACAGCTT+TGG | + | chr8.4:57408343-57408362 | MS.gene016461:CDS | 40.0% | |
| GCTAATTGATGTTGAAGTGG+AGG | - | chr8.4:57408272-57408291 | None:intergenic | 40.0% | |
| GCTTGGATTCAATGGTTTCA+CGG | + | chr8.4:57407442-57407461 | MS.gene016461:intron | 40.0% | |
| GGGTCTAATTCAAGTAAACC+AGG | - | chr8.4:57408487-57408506 | None:intergenic | 40.0% | |
| GGGTGAAGAAACAACTTCAA+AGG | + | chr8.4:57408437-57408456 | MS.gene016461:CDS | 40.0% | |
| GTAGTTCAGCTTGGATTCAA+TGG | + | chr8.4:57407434-57407453 | MS.gene016461:intron | 40.0% | |
| GTTGGAACTTCTAACAGGAA+AGG | + | chr8.4:57408375-57408394 | MS.gene016461:CDS | 40.0% | |
| TAGACCCAGAATCATCAGAA+TGG | + | chr8.4:57408500-57408519 | MS.gene016461:CDS | 40.0% | |
| TCCATTGGGCATGTAATCAT+AGG | - | chr8.4:57408017-57408036 | None:intergenic | 40.0% | |
| TCTCCAGCAAATTCACTTTC+TGG | + | chr8.4:57407284-57407303 | MS.gene016461:CDS | 40.0% | |
| TCTTCCCATTCTGATGATTC+TGG | - | chr8.4:57408508-57408527 | None:intergenic | 40.0% | |
| TGTAAGAGTCTTGACTTTGG+CGG | - | chr8.4:57407134-57407153 | None:intergenic | 40.0% | |
| TTCAAGCATCACACGTTTGT+TGG | + | chr8.4:57407075-57407094 | MS.gene016461:intron | 40.0% | |
| TTGTTGTCAGTGTTCTGTGT+CGG | + | chr8.4:57406569-57406588 | MS.gene016461:intron | 40.0% | |
| ! | CTTGGTGGAAATCGATTCAT+TGG | + | chr8.4:57407775-57407794 | MS.gene016461:intron | 40.0% |
| ! | GCGTCAAATAGAACGTTTTG+AGG | - | chr8.4:57408181-57408200 | None:intergenic | 40.0% |
| ! | GTGTTGTTGGAACTTCTAAC+AGG | + | chr8.4:57408370-57408389 | MS.gene016461:CDS | 40.0% |
| !! | ATTCACTGGTGTTATTCCTG+TGG | + | chr8.4:57407646-57407665 | MS.gene016461:intron | 40.0% |
| !! | CATTGTGGATTGGTGTATGA+AGG | - | chr8.4:57408140-57408159 | None:intergenic | 40.0% |
| !! | CTCAAGGTTTTATCACTTGG+TGG | + | chr8.4:57407760-57407779 | MS.gene016461:intron | 40.0% |
| !! | GGTTGTTCTTTTGAGGGTTA+TGG | + | chr8.4:57406698-57406717 | MS.gene016461:intron | 40.0% |
| AGACTCTTTCGTGATTTCCC+TGG | - | chr8.4:57408329-57408348 | None:intergenic | 45.0% | |
| ATGAGACACCTCATCACACT+AGG | + | chr8.4:57408097-57408116 | MS.gene016461:intron | 45.0% | |
| CAAGAAGCTTCTCACCAAGA+TGG | + | chr8.4:57408055-57408074 | MS.gene016461:intron | 45.0% | |
| CACCAGAAGCAATCTTAACC+AGG | + | chr8.4:57408308-57408327 | MS.gene016461:intron | 45.0% | |
| CATCTTGGTGAGAAGCTTCT+TGG | - | chr8.4:57408057-57408076 | None:intergenic | 45.0% | |
| CGAAAATGTCGGAACTTCAC+CGG | - | chr8.4:57407726-57407745 | None:intergenic | 45.0% | |
| GCCTATGATTACATGCCCAA+TGG | + | chr8.4:57408013-57408032 | MS.gene016461:intron | 45.0% | |
| GGTGTCAACATTTCCAACAG+TGG | - | chr8.4:57407208-57407227 | None:intergenic | 45.0% | |
| GTGATTCCGTATGGCGATTT+CGG | + | chr8.4:57407308-57407327 | MS.gene016461:CDS | 45.0% | |
| GTTGGTTAATGTGATGCAGG+AGG | + | chr8.4:57407093-57407112 | MS.gene016461:intron | 45.0% | |
| TACAGAGAGCCCATCAAATG+AGG | + | chr8.4:57407150-57407169 | MS.gene016461:CDS | 45.0% | |
| TCCCTGGTTAAGATTGCTTC+TGG | - | chr8.4:57408313-57408332 | None:intergenic | 45.0% | |
| TTGTACAAGCAAGCCACTGT+TGG | + | chr8.4:57407192-57407211 | MS.gene016461:CDS | 45.0% | |
| ! | AGTGTGATGAGGTGTCTCAT+TGG | - | chr8.4:57408097-57408116 | None:intergenic | 45.0% |
| ! | CACGTGTTTCAGTGTTGTTC+AGG | + | chr8.4:57407487-57407506 | MS.gene016461:intron | 45.0% |
| ! | CAGCTTTGGCATTGTGTTGT+TGG | + | chr8.4:57408357-57408376 | MS.gene016461:CDS | 45.0% |
| ! | GAGTGTTGCAAGGTTTCCAT+TGG | - | chr8.4:57408032-57408051 | None:intergenic | 45.0% |
| ! | TTTGAGGTTTAACGTCACCG+TGG | - | chr8.4:57408165-57408184 | None:intergenic | 45.0% |
| !! | CTTTCTGGAGTGATTCCGTA+TGG | + | chr8.4:57407299-57407318 | MS.gene016461:CDS | 45.0% |
| !! | GGGCTCAAGGTTTTATCACT+TGG | + | chr8.4:57407757-57407776 | MS.gene016461:intron | 45.0% |
| !! | GTCTTTGAGGTAGTTCAGCT+TGG | + | chr8.4:57407425-57407444 | MS.gene016461:intron | 45.0% |
| ACTCTGTCACCTTCCTACGT+CGG | + | chr8.4:57407256-57407275 | MS.gene016461:CDS | 50.0% | |
| ATCACACTAGGAATTGCCCG+CGG | + | chr8.4:57408109-57408128 | MS.gene016461:intron | 50.0% | |
| CACCAATCCACAATGGTCCA+CGG | + | chr8.4:57408145-57408164 | MS.gene016461:intron | 50.0% | |
| CGACAATGTGAAAGGGCTCA+AGG | + | chr8.4:57407744-57407763 | MS.gene016461:intron | 50.0% | |
| CTTGGTGAGAAGCTTCTTGG+AGG | - | chr8.4:57408054-57408073 | None:intergenic | 50.0% | |
| GAGGCTGCTTCTCATGATGT+GGG | - | chr8.4:57408253-57408272 | None:intergenic | 50.0% | |
| GGGCAATTCCTAGTGTGATG+AGG | - | chr8.4:57408108-57408127 | None:intergenic | 50.0% | |
| GGTGTATGAAGGCTAATCCG+CGG | - | chr8.4:57408129-57408148 | None:intergenic | 50.0% | |
| GTGACCATCACCTGAAGCAT+CGG | - | chr8.4:57407339-57407358 | None:intergenic | 50.0% | |
| GTGTATGAAGGCTAATCCGC+GGG | - | chr8.4:57408128-57408147 | None:intergenic | 50.0% | |
| ! | GGTTCAGTTTCGGCGAGTTT+TGG | + | chr8.4:57407796-57407815 | MS.gene016461:intron | 50.0% |
| ! | TAAGAGGCACGTTTCCCTTG+TGG | + | chr8.4:57407534-57407553 | MS.gene016461:intron | 50.0% |
| ! | TCGAGTATGCATTTTCCGGC+CGG | + | chr8.4:57407593-57407612 | MS.gene016461:intron | 50.0% |
| !! | CTTCTTGGAGGAGTGTTGCA+AGG | - | chr8.4:57408042-57408061 | None:intergenic | 50.0% |
| AACGTCACCGTGGACCATTG+TGG | - | chr8.4:57408155-57408174 | None:intergenic | 55.0% | |
| CACCGTGGACCATTGTGGAT+TGG | - | chr8.4:57408150-57408169 | None:intergenic | 55.0% | |
| CACCTTCAACTCCGTCAACC+CGG | - | chr8.4:57407615-57407634 | None:intergenic | 55.0% | |
| CGGAGTCAGTGTCGTGTATC+AGG | + | chr8.4:57406589-57406608 | MS.gene016461:intron | 55.0% | |
| GAGATCTGTCCGACGTAGGA+AGG | - | chr8.4:57407268-57407287 | None:intergenic | 55.0% | |
| GCTTCCGATGCTTCAGGTGA+TGG | + | chr8.4:57407332-57407351 | MS.gene016461:intron | 55.0% | |
| GGAGGCTGCTTCTCATGATG+TGG | - | chr8.4:57408254-57408273 | None:intergenic | 55.0% | |
| ! | CGAGTATGCATTTTCCGGCC+GGG | + | chr8.4:57407594-57407613 | MS.gene016461:intron | 55.0% |
| !! | GAAGCGCCGAAATCGCCATA+CGG | - | chr8.4:57407317-57407336 | None:intergenic | 55.0% |
| ACTACCTCAAAGACGGCGCG+TGG | - | chr8.4:57407419-57407438 | None:intergenic | 60.0% | |
| GCTGGAGATCTGTCCGACGT+AGG | - | chr8.4:57407272-57407291 | None:intergenic | 60.0% | |
| TTCAACTCCGTCAACCCGGC+CGG | - | chr8.4:57407611-57407630 | None:intergenic | 60.0% | |
| TTCGGCGCTTCCGATGCTTC+AGG | + | chr8.4:57407326-57407345 | MS.gene016461:CDS | 60.0% | |
| ! | CGGGTTGACGGAGTTGAAGG+TGG | + | chr8.4:57407613-57407632 | MS.gene016461:intron | 60.0% |
| !! | GCATTTTCCGGCCGGGTTGA+CGG | + | chr8.4:57407601-57407620 | MS.gene016461:intron | 60.0% |
| CGTTCCACGCGCCGTCTTTG+AGG | + | chr8.4:57407412-57407431 | MS.gene016461:intron | 65.0% | |
| ! | GGCCGGGTTGACGGAGTTGA+AGG | + | chr8.4:57407610-57407629 | MS.gene016461:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 57406322 | 57408582 | 57406322 | ID=MS.gene016461 |
| chr8.4 | mRNA | 57406322 | 57408582 | 57406322 | ID=MS.gene016461.t1;Parent=MS.gene016461 |
| chr8.4 | exon | 57406322 | 57406333 | 57406322 | ID=MS.gene016461.t1.exon1;Parent=MS.gene016461.t1 |
| chr8.4 | CDS | 57406322 | 57406333 | 57406322 | ID=cds.MS.gene016461.t1;Parent=MS.gene016461.t1 |
| chr8.4 | exon | 57407112 | 57407347 | 57407112 | ID=MS.gene016461.t1.exon2;Parent=MS.gene016461.t1 |
| chr8.4 | CDS | 57407112 | 57407347 | 57407112 | ID=cds.MS.gene016461.t1;Parent=MS.gene016461.t1 |
| chr8.4 | exon | 57408330 | 57408582 | 57408330 | ID=MS.gene016461.t1.exon3;Parent=MS.gene016461.t1 |
| chr8.4 | CDS | 57408330 | 57408582 | 57408330 | ID=cds.MS.gene016461.t1;Parent=MS.gene016461.t1 |
| Gene Sequence |
| Protein sequence |
