AlfalfaGEDB | MS.gene01649

M. sativa cultivar XinJiangDaYe / MS.gene01649

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01649.t1	XP_003593218.2	95.7	792	32	1	1	790	15	806	0.00E+00	1472.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01649.t1	Q9LME6	34.9	232	113	4	123	328	238	457	6.9e-25	117.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01649.t1	G7IPJ6	95.7	792	32	1	1	790	15	806	0.0e+00	1472.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene01649.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01649.t1	MTR_2g009040	95.707	792	32	1	1	790	15	806	0.0	1432
MS.gene01649.t1	MTR_3g074640	38.060	268	117	10	37	261	56	317	2.64e-29	125
MS.gene01649.t1	MTR_3g074640	38.060	268	117	10	37	261	56	317	2.67e-29	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01649.t1	AT1G22310	45.752	153	61	3	123	253	139	291	1.27e-34	137
MS.gene01649.t1	AT1G22310	45.752	153	61	3	123	253	238	390	4.75e-34	137

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Find 205 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTTATGACAGAAC+TGG	0.462546	2.4:-74086921	None:intergenic
AAAATGGAAAAGAGCTTGAC+TGG	0.520687	2.4:+74087237	MS.gene01649:CDS
AAACGGTGTTGTCATTGATT+TGG	0.350314	2.4:+74085277	MS.gene01649:CDS
AAAGAATCCAAAGATTGTTC+TGG	0.310627	2.4:-74087753	None:intergenic
AACGATTACCAGTCTAAAGA+TGG	0.519030	2.4:-74088804	None:intergenic
AACGGAAAGATGGTCGTGCT+TGG	0.469083	2.4:+74085501	MS.gene01649:CDS
AACTGGACACATGAATCCAA+CGG	0.616659	2.4:-74088722	None:intergenic
AAGAATCCAAAGATTGTTCT+GGG	0.453262	2.4:-74087752	None:intergenic
AAGGACGGAGGGGTTAAAGG+AGG	0.627983	2.4:+74085346	MS.gene01649:CDS
AAGGAGGAAGAGGAGTTGTT+AGG	0.257264	2.4:+74085362	MS.gene01649:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACTTTATGACAGAAC+TGG	-	chr2.4:74086924-74086943	None:intergenic	30.0%
AAAGAATCCAAAGATTGTTC+TGG	-	chr2.4:74087756-74087775	None:intergenic	30.0%
AAGAATCCAAAGATTGTTCT+GGG	-	chr2.4:74087755-74087774	None:intergenic	30.0%
AAGCTATCATGAAGAGTTTA+TGG	+	chr2.4:74085765-74085784	MS.gene01649:intron	30.0%
AGATATGTTTATGGCATGTT+TGG	-	chr2.4:74086383-74086402	None:intergenic	30.0%
AGTTATGCATTATACCTTGT+CGG	-	chr2.4:74087793-74087812	None:intergenic	30.0%
ATATGTGGAAAACATTCAAG+AGG	-	chr2.4:74088017-74088036	None:intergenic	30.0%
ATCTCGGCATCAATAAAAAA+TGG	-	chr2.4:74088115-74088134	None:intergenic	30.0%
CAACTTATGGACATTTCATA+AGG	+	chr2.4:74086316-74086335	MS.gene01649:intron	30.0%
GAAGAGATTGTGAACAAAAA+CGG	+	chr2.4:74085260-74085279	MS.gene01649:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	74084849	74088813	74084849	ID=MS.gene01649
chr2.4	mRNA	74084849	74088813	74084849	ID=MS.gene01649.t1;Parent=MS.gene01649
chr2.4	exon	74084849	74085546	74084849	ID=MS.gene01649.t1.exon1;Parent=MS.gene01649.t1
chr2.4	CDS	74084849	74085546	74084849	ID=cds.MS.gene01649.t1;Parent=MS.gene01649.t1
chr2.4	exon	74086468	74087797	74086468	ID=MS.gene01649.t1.exon2;Parent=MS.gene01649.t1
chr2.4	CDS	74086468	74087797	74086468	ID=cds.MS.gene01649.t1;Parent=MS.gene01649.t1
chr2.4	exon	74088469	74088813	74088469	ID=MS.gene01649.t1.exon3;Parent=MS.gene01649.t1
chr2.4	CDS	74088469	74088813	74088469	ID=cds.MS.gene01649.t1;Parent=MS.gene01649.t1

Gene Sequence

>MS.gene01649

ATGGAATGGTTAACTTCAATTGATTCAACAACTCTCACACATTCAGAGCTTCAAGCACTTTCTCTCTCTTCTCTTTCTTCCTTCGACCTTAAATCTACACGCGAAATCGTCACTCCTAAAATCGATCCATCAACCTTCAACCACAGCGCTGGGTCCCACCGCACCTACTCCCGTCCTCACCGTCGATGTCGCGTCGCACCGCCACTTCTTCCTACTCCCACTCTCCCCTCCGACCACCGCATCATCATCGATTACCTCAAACAGTTCATCAGAGAAGATCCGAAGTTCGACACTGTTGAGCTTCGGAATCCTTCAATTCCGGAGGTGAAGGAATTTCCATTGGCATTGCCTGGCGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCGAAAGTGAAAACTCATTTGGAGGAAGAGATTGTGAACAAAAACGGTGTTGTCATTGATTTGGCGGCGTTATCGGAGGTGGAGCATCCGTTTGCGGCGGAGATAGCGAGAAGGACGGAGGGGTTAAAGGAGGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGGCAGTGGGGAAGTAGGAGGAGGAAGAGGAGGATTGTTGATGCTTCTGATTTTGGTGATGTGTTGCCTTTGGGATGGAAGCTTCTTCTTAGTTTGAAACGGAAAGATGGTCGTGCTTGGATTTATTGCCGCAGATATATAAGGTTTTGGATTTTATATTCTTCAGTTTTAGGATAATACATATATGTTTGTTTTGTTGTTAATTTGGAATGACATTAATGTGCTTTGCTGGTATAGTCAGTTTAATTAAGCACTTATAGCATAATTGATTACCATATAAGTGTTTTTGTATAAACTATTTCTATAACAAAAGATAAAATGAAGTCAAACTGTTTCTATATAAGATATAAGCTGTTTTCATAAGCTATCATGAAGAGTTTATGGAAATAAGTTGAAGATAGCTTATGGACATGACATAAGCTGTTTCCATAAGCTCTCTCAAATAGTCTCATGGGTGCTTATGCAGTAGTCAATAGGTAAGGTCAAATAAGTCAACTCAAACATGCCATAAATATAGCTGTCATTTGTTTATGTTATTTGAATCACAGAATTGGAAAGTTTACATGTATTATTAATGTGTTGTTTTTCGTTAACTTCTTATAGAATTAATGTTCTTTGCTTATTAATGGGCCAGGAGTGAGGAGTTTTCCTTTGATGTGAGCCCATGTTAGGATAAACAGTATAATGAAGTGCTCATAGTCTAAGTGCTTACTATATAAGTGCTTATGTAGAAGCTATTTCTAAAACAAATTTGGGTATTACTTTTTGTTTGGAACTAAATTTGGGCACAAGAAATTTGCGAGGGACTAAAATGGGTCTTCACTCAAGGATAAGATATAGTCAATCTGTTTTTTATATATGCTACACTGTTTTATAATTTATCCTAAAGAGTTTATGGAAATAAGCTGAAAACAACTTATGGACATTTCATAAGGTGTTTATGCAGTAGTCAATAGATAAGGTCAAATAAGTCAACCCAAACATGCCATAAACATATCTGTTTTTGCTTGTTTGTTTTGGTTTGCTTTTTTGTGCTTATTTGTTTCTTGTTTGATATTCTCCAGTCCTAATGGACAGCAGTTTCTGTCTTGCAAAGAAGTTTCTTCGTATCTGCAGTCTCTTTTTGGTCACACTGATACACAGTTACAAATCACTCAAAGGAGTGAAAATGTACTTCCGGAACAGAGAGTGACTACTGAAAATGTAAGTACCCCTGCTGCTGCTTCTGTTGCCCGCGAGGAGCAGGACCAACGACAGATTGTTGCCACTAACTCAAATGTGTCTGGTTTGTCCGTCTCTAATGAACGATTCAAGGAAATTGCCTTGCTGGAAATGGAGAACCTTGCAGATGTGCAAATACACGATCTGTTTGAATGTCACAAGTGCAGCTTGACCTTTGATGAGAAGGATGCATATTTGCAGCACCTGTTGTCTATTCATCAGAAGACAACAAGGCGGTATCGACTTGGTTCATCCGTTTCAGATGGAGTTATAATTAAAGATGGAAAATTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAACGTCGCTACAATAGTCATGTTGGGATTCATGTTAGGAATTATTTGAGGAGAGCTGAAGATTTGCCGGGTCAGCCTAATGTCCTGGGAGCAGAAGAGTCTCCAGTCACGGATGAGACACCTTCAAGGATCACGAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTATAGAGGATTCTATCATGGAGCCATCCTCTACACTAAATACGATACCTGTTTCAGAAATTGCGGTTGGCGACTTAGATGAAGATATAAATGCCGAGTCTCCATTCGGTGAACAGAAAATGGAAAAGAGCTTGACTGGCACAAATGTAGTTAGCGATCTAAATCAGCAAGGTAGTCCTCGTTTACCGATGGATGGAACAATAGAGGAAATTGATGCTAATAACCGAGTTGTTGATGCAAAGATGGTTAGTTTTCTAGATAACACTGGTTTGTTATCTGTAAATAAGAAAAATGTTGATGCACCTGATACTTCTGAAGGTAAAGGTGATGTGGCGCTGACTGTTGAGGGGTTTGATCATTCTGGGAGTGAACTGCAAGGAGCTTCTCAAAGTCCCTTGCTTCATTCATCTGGGAATCACATGAAACCTGGATCCAAGAAGAGTGAAAATTCTGGTTGCACTAATACTAAGGGGGATCTTAAATTTGATGAAGACAGTAGCAATAAGAGTGACTTGAAAATTGGTTTAGATAGCTGCTATGATGTACCTGGTGTTTCTAATGTTCATGTGACAGCAATGCCAACTTCTAAAGAAAATGTGGTCCAATCTAAGGTTTCTAACCCCTCGGTATCCCCAGAACAATCTTTGGATTCTTTTTCTGCATTCAGCTCCGACAAGGTATAATGCATAACTTATCCTTGCCATTATTGGCAGGGTTTCATATATGTTGCAAAATAGAGGAAATGTTCCTACAAGTATCATAGCAGGGTCTTCTTAAAACGTGGTTAATTTGAAGCCCTTTATGCATGTCTTGTGGTCTACTGTGCTTACTTTCAACTATGTCTCTAATATATTCAGGTTTTATTTTGTATTGATCCATGGATTGAAGTGCTCCCTCTTGAATGTTTTCCACATATATCTTACAAAGAGAAAAAATTATTACTTTATTTGGGCATGCTTGTTTTTGGGGAGATAATAAATTATAGGTCTGGCCATTTTTTATTGATGCCGAGATTAAGAATGCTTGCATGGTATCTTACTTGTTCTTCAGCCTTATACATCTCTCCTACTCTTAGATTAGGTGTCTTGGAGATTTGGGTGGCGCTAGTTGCTAGGTTATGGCCACGTGCTTGTGTACTTTCAACAAACATGGCTATTATATTTCGTATTTGATCTATCTTTCTTCATTTGAACTATTTGTAAAAGCAAATTATCATTATTGGAATCTAGCGTCATGGACATCAAATTCTCTTATGCAGCAATTAGCTACTACCCACCCACTCTGCACTTAACTGATTGGCAGTGCTGATCTTACTTGAAATATGATTCTTGTTATTCCTCATTGACAGGGGTTCCAGGAATTGAGGTTAGAAGATATTAGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGGTTCTCTTGATGTGTCAACTGAATTGGCAAATGACATAGTGGTGCAAGGGACATGTGCATCCTCAGCTCAGTCTGCATCACAAGAAGTTACGTTAAATATGGATTACAAAAATCAGCTCACAACCACATGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCCGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATCTTTAG

Protein sequence

>MS.gene01649.t1

MEWLTSIDSTTLTHSELQALSLSSLSSFDLKSTREIVTPKIDPSTFNHSAGSHRTYSRPHRRCRVAPPLLPTPTLPSDHRIIIDYLKQFIREDPKFDTVELRNPSIPEVKEFPLALPGGEVRKRKRGRKPKVKTHLEEEIVNKNGVVIDLAALSEVEHPFAAEIARRTEGLKEEEELLGFLSDLVGQWGSRRRKRRIVDASDFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPNGQQFLSCKEVSSYLQSLFGHTDTQLQITQRSENVLPEQRVTTENVSTPAAASVAREEQDQRQIVATNSNVSGLSVSNERFKEIALLEMENLADVQIHDLFECHKCSLTFDEKDAYLQHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRRAEDLPGQPNVLGAEESPVTDETPSRITKMDALIEIAQNSIIEDSIMEPSSTLNTIPVSEIAVGDLDEDINAESPFGEQKMEKSLTGTNVVSDLNQQGSPRLPMDGTIEEIDANNRVVDAKMVSFLDNTGLLSVNKKNVDAPDTSEGKGDVALTVEGFDHSGSELQGASQSPLLHSSGNHMKPGSKKSENSGCTNTKGDLKFDEDSSNKSDLKIGLDSCYDVPGVSNVHVTAMPTSKENVVQSKVSNPSVSPEQSLDSFSAFSSDKGFQELRLEDISSLEYDFASVQGSLDVSTELANDIVVQGTCASSAQSASQEVTLNMDYKNQLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHL