Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016607.t1 | XP_003627845.1 | 97.9 | 327 | 5 | 1 | 1 | 325 | 1 | 327 | 1.70E-114 | 422.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016607.t1 | Q94CK9 | 56.0 | 191 | 80 | 3 | 122 | 312 | 112 | 298 | 2.7e-31 | 137.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016607.t1 | G7LG16 | 97.9 | 327 | 5 | 1 | 1 | 325 | 1 | 327 | 1.2e-114 | 422.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016607.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016607.t1 | MTR_8g039110 | 96.636 | 327 | 9 | 1 | 1 | 325 | 1 | 327 | 0.0 | 662 |
| MS.gene016607.t1 | MTR_0363s0040 | 95.370 | 216 | 8 | 1 | 1 | 214 | 1 | 216 | 2.18e-154 | 432 |
| MS.gene016607.t1 | MTR_3g014660 | 61.516 | 343 | 98 | 16 | 1 | 324 | 1 | 328 | 2.40e-113 | 332 |
| MS.gene016607.t1 | MTR_5g089750 | 44.074 | 270 | 124 | 8 | 42 | 296 | 159 | 416 | 3.96e-51 | 176 |
| MS.gene016607.t1 | MTR_8g076620 | 40.698 | 172 | 73 | 2 | 109 | 280 | 108 | 250 | 2.63e-34 | 128 |
| MS.gene016607.t1 | MTR_5g021130 | 45.679 | 162 | 79 | 4 | 122 | 282 | 100 | 253 | 6.74e-33 | 124 |
| MS.gene016607.t1 | MTR_3g112510 | 38.710 | 186 | 82 | 6 | 122 | 302 | 86 | 244 | 3.96e-30 | 116 |
| MS.gene016607.t1 | MTR_4g071110 | 36.782 | 174 | 72 | 4 | 111 | 284 | 6 | 141 | 7.62e-25 | 101 |
| MS.gene016607.t1 | MTR_1g023230 | 75.556 | 45 | 11 | 0 | 122 | 166 | 122 | 166 | 4.05e-18 | 82.8 |
| MS.gene016607.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 124 | 156 | 44 | 76 | 1.78e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016607.t1 | AT5G12330 | 39.077 | 325 | 176 | 8 | 1 | 320 | 1 | 308 | 8.50e-57 | 187 |
| MS.gene016607.t1 | AT5G12330 | 39.077 | 325 | 176 | 8 | 1 | 320 | 1 | 308 | 8.50e-57 | 187 |
| MS.gene016607.t1 | AT5G12330 | 39.077 | 325 | 176 | 8 | 1 | 320 | 88 | 395 | 2.19e-56 | 188 |
| MS.gene016607.t1 | AT3G54430 | 44.571 | 175 | 65 | 4 | 120 | 293 | 39 | 182 | 1.67e-38 | 135 |
| MS.gene016607.t1 | AT1G75520 | 44.444 | 162 | 83 | 3 | 122 | 280 | 125 | 282 | 1.91e-37 | 137 |
| MS.gene016607.t1 | AT5G66350 | 40.223 | 179 | 89 | 1 | 109 | 287 | 107 | 267 | 3.56e-37 | 135 |
| MS.gene016607.t1 | AT5G66350 | 40.909 | 176 | 86 | 1 | 109 | 284 | 107 | 264 | 5.19e-37 | 135 |
| MS.gene016607.t1 | AT5G66350 | 40.223 | 179 | 89 | 1 | 109 | 287 | 107 | 267 | 5.19e-37 | 135 |
| MS.gene016607.t1 | AT3G51060 | 46.875 | 160 | 61 | 5 | 122 | 278 | 144 | 282 | 9.47e-35 | 130 |
| MS.gene016607.t1 | AT1G19790 | 43.210 | 162 | 78 | 3 | 122 | 280 | 119 | 269 | 1.32e-33 | 127 |
| MS.gene016607.t1 | AT1G19790 | 43.210 | 162 | 78 | 3 | 122 | 280 | 119 | 269 | 1.32e-33 | 127 |
| MS.gene016607.t1 | AT4G36260 | 34.361 | 227 | 130 | 5 | 59 | 280 | 32 | 244 | 1.86e-30 | 117 |
| MS.gene016607.t1 | AT2G18120 | 37.423 | 163 | 76 | 2 | 122 | 284 | 72 | 208 | 1.45e-29 | 113 |
| MS.gene016607.t1 | AT2G18120 | 37.195 | 164 | 73 | 3 | 122 | 284 | 72 | 206 | 1.93e-29 | 112 |
| MS.gene016607.t1 | AT2G21400 | 37.654 | 162 | 72 | 3 | 120 | 281 | 8 | 140 | 4.39e-29 | 110 |
| MS.gene016607.t1 | AT2G21400 | 37.654 | 162 | 72 | 3 | 120 | 281 | 7 | 139 | 4.60e-29 | 110 |
| MS.gene016607.t1 | AT2G21400 | 35.185 | 162 | 61 | 3 | 120 | 281 | 8 | 125 | 5.38e-28 | 107 |
| MS.gene016607.t1 | AT2G21400 | 35.185 | 162 | 61 | 3 | 120 | 281 | 7 | 124 | 5.46e-28 | 107 |
| MS.gene016607.t1 | AT5G12330 | 37.089 | 213 | 117 | 6 | 1 | 208 | 1 | 201 | 3.55e-27 | 106 |
| MS.gene016607.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 122 | 171 | 17 | 66 | 2.78e-20 | 84.7 |
| MS.gene016607.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 122 | 171 | 52 | 101 | 2.89e-19 | 84.0 |
Find 69 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAAAATGGTGAGTTTA+GGG | 0.245200 | 8.2:-61215611 | MS.gene016607:CDS |
| GATGAAGGTAAGGGAAGATT+TGG | 0.304120 | 8.2:+61215853 | None:intergenic |
| ATATTCTCATTGTTATTGTT+AGG | 0.304242 | 8.2:+61215763 | None:intergenic |
| GTGAGGAAAATGGTGAGTTT+AGG | 0.327085 | 8.2:-61215612 | MS.gene016607:CDS |
| CTATTAGAACCAAGTCTCTT+AGG | 0.357173 | 8.2:+61215935 | None:intergenic |
| TGAAGATGAACTTGCTTACT+TGG | 0.373159 | 8.2:-61214653 | MS.gene016607:CDS |
| AGTGATGGTGGTGCTTCTTC+TGG | 0.380721 | 8.2:-61215424 | MS.gene016607:CDS |
| TGTTGCAAAATGAACATGTT+AGG | 0.386699 | 8.2:-61215958 | None:intergenic |
| TATTCTCATTGTTATTGTTA+GGG | 0.402170 | 8.2:+61215764 | None:intergenic |
| ATGTTCTTCCTCTGCAATTG+AGG | 0.420350 | 8.2:-61214497 | MS.gene016607:CDS |
| TGCCAACAGCAGATACTCTA+TGG | 0.431824 | 8.2:+61214680 | None:intergenic |
| TGGATTATGATCTGATGAAA+TGG | 0.439260 | 8.2:+61215873 | None:intergenic |
| TGTTGGTTGTGAAGTGATGA+AGG | 0.446919 | 8.2:+61215904 | None:intergenic |
| CGGCTTCGATGAGGCGGGAC+CGG | 0.454062 | 8.2:-61215474 | MS.gene016607:CDS |
| TATGATCTGATGAAATGGTT+TGG | 0.460879 | 8.2:+61215878 | None:intergenic |
| TTTAGGGTTTGTCAAGATTG+TGG | 0.461202 | 8.2:-61215595 | MS.gene016607:CDS |
| GAATTGCAACTTGGAAGTAA+TGG | 0.469782 | 8.2:-61214541 | MS.gene016607:CDS |
| CAATCTCAACAAGCAGAAGC+AGG | 0.470698 | 8.2:+61214457 | None:intergenic |
| TAGTGCTGATGATGAAGGTA+AGG | 0.474808 | 8.2:+61215843 | None:intergenic |
| CGTGAAGAGTACGTGGATAC+CGG | 0.481380 | 8.2:-61215494 | MS.gene016607:CDS |
| TCATCATTACTTGTTGTGGT+TGG | 0.483361 | 8.2:+61215704 | None:intergenic |
| TCAGCACTAAGTGTTGGTCT+TGG | 0.487088 | 8.2:-61215829 | MS.gene016607:CDS |
| AAAGGGTTTCTCTATGATCA+AGG | 0.488489 | 8.2:-61214601 | MS.gene016607:CDS |
| CATGTTAGGCCTAAGAGACT+TGG | 0.493330 | 8.2:-61215944 | MS.gene016607:CDS |
| ATGATGGGTTGTGAGGAAAA+TGG | 0.496411 | 8.2:-61215622 | MS.gene016607:CDS |
| TTCATCATCATTACTTGTTG+TGG | 0.498315 | 8.2:+61215700 | None:intergenic |
| AATCAAAATTCTCTGCCTCT+TGG | 0.499143 | 8.2:+61215399 | None:intergenic |
| GAAGCAGGGTAAGCACTAGT+TGG | 0.512667 | 8.2:+61214472 | None:intergenic |
| ATTGTAGCTATAAAAGATGC+AGG | 0.519421 | 8.2:-61215555 | MS.gene016607:CDS |
| CAACTTGGAAGTAATGGAAG+TGG | 0.519956 | 8.2:-61214535 | MS.gene016607:CDS |
| GGTGAGTAGTGGTTAGGAGT+GGG | 0.529385 | 8.2:+61215800 | None:intergenic |
| TAAGTGGCCATGTATTCAAA+GGG | 0.529963 | 8.2:-61214618 | MS.gene016607:CDS |
| GGCAAAGTCTGCTTGAAACC+AGG | 0.531084 | 8.2:+61214736 | None:intergenic |
| AGAGAAACCCTTTGAATACA+TGG | 0.531479 | 8.2:+61214611 | None:intergenic |
| ATAAGTGGCCATGTATTCAA+AGG | 0.532258 | 8.2:-61214619 | MS.gene016607:CDS |
| TTGGCTACTGTGAATATAAG+TGG | 0.534470 | 8.2:-61214634 | MS.gene016607:CDS |
| CGGTCCCGCCTCATCGAAGC+CGG | 0.540948 | 8.2:+61215475 | None:intergenic |
| GCAGGCGCGCGAACATAGCG+AGG | 0.545668 | 8.2:+61214715 | None:intergenic |
| AGGACTTGTTGTAAAGGTCG+TGG | 0.546270 | 8.2:-61215535 | MS.gene016607:CDS |
| GATGAGGGTGAGTAGTGGTT+AGG | 0.546291 | 8.2:+61215794 | None:intergenic |
| AGATGCAGGACTTGTTGTAA+AGG | 0.546985 | 8.2:-61215541 | MS.gene016607:CDS |
| GCTTAAACTTCTTGTTCTAG+TGG | 0.556742 | 8.2:+61215321 | None:intergenic |
| CTATGGCACTTGAAAACAGC+AGG | 0.559201 | 8.2:+61214697 | None:intergenic |
| GGGTGAGTAGTGGTTAGGAG+TGG | 0.563980 | 8.2:+61215799 | None:intergenic |
| ACACTTAGTGCTGATGATGA+AGG | 0.573973 | 8.2:+61215838 | None:intergenic |
| TGTGTTTCAGAATTGCAACT+TGG | 0.580875 | 8.2:-61214550 | MS.gene016607:CDS |
| TGCCATAGAGTATCTGCTGT+TGG | 0.581569 | 8.2:-61214682 | MS.gene016607:CDS |
| TTGATGATGAGGGTGAGTAG+TGG | 0.583936 | 8.2:+61215789 | None:intergenic |
| GAGGCGGGACCGGAGTATGA+TGG | 0.586244 | 8.2:-61215464 | MS.gene016607:CDS |
| CGGAGTATGATGGTGGCTGA+AGG | 0.587151 | 8.2:-61215454 | MS.gene016607:CDS |
| GCTGAAGGTGGTGACAGTGA+TGG | 0.591111 | 8.2:-61215439 | MS.gene016607:CDS |
| GATACCGGCTTCGATGAGGC+GGG | 0.596250 | 8.2:-61215479 | MS.gene016607:CDS |
| GAAGGTGGTGACAGTGATGG+TGG | 0.597594 | 8.2:-61215436 | MS.gene016607:CDS |
| GGATACCGGCTTCGATGAGG+CGG | 0.605870 | 8.2:-61215480 | MS.gene016607:CDS |
| AGAGTATCTGCTGTTGGCAA+TGG | 0.611315 | 8.2:-61214676 | MS.gene016607:CDS |
| TCATCATCAGCACTAAGTGT+TGG | 0.620780 | 8.2:-61215835 | MS.gene016607:CDS |
| GTTGTGGTTGGCACATCTTG+AGG | 0.623886 | 8.2:+61215716 | None:intergenic |
| AATCTCAACAAGCAGAAGCA+GGG | 0.625538 | 8.2:+61214458 | None:intergenic |
| AGTGCTGATGATGAAGGTAA+GGG | 0.630191 | 8.2:+61215844 | None:intergenic |
| GCGGGACCGGAGTATGATGG+TGG | 0.640592 | 8.2:-61215461 | MS.gene016607:CDS |
| AAACTTGATGATGGGTTGTG+AGG | 0.642133 | 8.2:-61215629 | MS.gene016607:CDS |
| GTGCTTCTTCTGGTACCAAG+AGG | 0.651535 | 8.2:-61215414 | MS.gene016607:CDS |
| CTTCAGCCACCATCATACTC+CGG | 0.656848 | 8.2:+61215455 | None:intergenic |
| CGTGGATACCGGCTTCGATG+AGG | 0.658234 | 8.2:-61215483 | MS.gene016607:CDS |
| AGTATGATGGTGGCTGAAGG+TGG | 0.658861 | 8.2:-61215451 | MS.gene016607:CDS |
| ATAACTAGCTCTTGTCACCA+AGG | 0.669802 | 8.2:-61215292 | MS.gene016607:intron |
| AGTTGGAACCTCAATTGCAG+AGG | 0.675832 | 8.2:+61214489 | None:intergenic |
| AGTTGCAATTCTGAAACACA+AGG | 0.685469 | 8.2:+61214553 | None:intergenic |
| GTACTCACGTGAAGAGTACG+TGG | 0.688748 | 8.2:-61215501 | MS.gene016607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATGATTATTTAATCA+TGG | + | chr8.2:61215162-61215181 | None:intergenic | 10.0% |
| !!! | ATTTACAAAACTTTTTTTTA+TGG | - | chr8.2:61215188-61215207 | MS.gene016607:intron | 10.0% |
| !!! | TTGTTATTTCATAAATTTAA+GGG | - | chr8.2:61215406-61215425 | MS.gene016607:CDS | 10.0% |
| !!! | TTTGTTATTTCATAAATTTA+AGG | - | chr8.2:61215405-61215424 | MS.gene016607:CDS | 10.0% |
| !! | ATTAAAAAAAGTGAGTAAAT+AGG | + | chr8.2:61215475-61215494 | None:intergenic | 15.0% |
| !!! | ATATTCTCATTGTTATTGTT+AGG | + | chr8.2:61214651-61214670 | None:intergenic | 20.0% |
| !!! | TATTCTCATTGTTATTGTTA+GGG | + | chr8.2:61214650-61214669 | None:intergenic | 20.0% |
| !!! | TCATTGTTACTTTATAAACT+AGG | - | chr8.2:61215498-61215517 | MS.gene016607:CDS | 20.0% |
| !!! | TTTTTCTATTAACCAAACTT+AGG | + | chr8.2:61215554-61215573 | None:intergenic | 20.0% |
| ! | AAGAAACAAAAACTTGATGA+TGG | - | chr8.2:61214773-61214792 | MS.gene016607:intron | 25.0% |
| ! | AATTGTGTATATCCTAAGTT+TGG | - | chr8.2:61215539-61215558 | MS.gene016607:CDS | 25.0% |
| !! | AGAAACAAAAACTTGATGAT+GGG | - | chr8.2:61214774-61214793 | MS.gene016607:intron | 25.0% |
| ATCAATCAATTTAGTCTCAG+AGG | + | chr8.2:61215365-61215384 | None:intergenic | 30.0% | |
| ATTGTAGCTATAAAAGATGC+AGG | - | chr8.2:61214856-61214875 | MS.gene016607:intron | 30.0% | |
| CGGATAATGATTTACAGAAA+TGG | - | chr8.2:61215266-61215285 | MS.gene016607:intron | 30.0% | |
| TATGATCTGATGAAATGGTT+TGG | + | chr8.2:61214536-61214555 | None:intergenic | 30.0% | |
| TGGATTATGATCTGATGAAA+TGG | + | chr8.2:61214541-61214560 | None:intergenic | 30.0% | |
| ! | TTCATCATCATTACTTGTTG+TGG | + | chr8.2:61214714-61214733 | None:intergenic | 30.0% |
| !! | AACAAAAAGTGAAAGTACCT+TGG | + | chr8.2:61215139-61215158 | None:intergenic | 30.0% |
| !!! | ATGAAATGGTTTGGTTTTGT+TGG | + | chr8.2:61214527-61214546 | None:intergenic | 30.0% |
| AAAGGGTTTCTCTATGATCA+AGG | - | chr8.2:61215810-61215829 | MS.gene016607:CDS | 35.0% | |
| AATCAAAATTCTCTGCCTCT+TGG | + | chr8.2:61215015-61215034 | None:intergenic | 35.0% | |
| AGAGAAACCCTTTGAATACA+TGG | + | chr8.2:61215803-61215822 | None:intergenic | 35.0% | |
| ATAAGTGGCCATGTATTCAA+AGG | - | chr8.2:61215792-61215811 | MS.gene016607:CDS | 35.0% | |
| CTATTAGAACCAAGTCTCTT+AGG | + | chr8.2:61214479-61214498 | None:intergenic | 35.0% | |
| CTGTAAATCATTATCCGTGT+CGG | + | chr8.2:61215263-61215282 | None:intergenic | 35.0% | |
| GAATTGCAACTTGGAAGTAA+TGG | - | chr8.2:61215870-61215889 | MS.gene016607:CDS | 35.0% | |
| GCATAATCCAGTGTAATCAT+AGG | - | chr8.2:61215288-61215307 | MS.gene016607:intron | 35.0% | |
| GCTTAAACTTCTTGTTCTAG+TGG | + | chr8.2:61215093-61215112 | None:intergenic | 35.0% | |
| TAAGTGGCCATGTATTCAAA+GGG | - | chr8.2:61215793-61215812 | MS.gene016607:CDS | 35.0% | |
| TGAGGAAAATGGTGAGTTTA+GGG | - | chr8.2:61214800-61214819 | MS.gene016607:intron | 35.0% | |
| TGGTTAATAGAAAAATGCCC+CGG | - | chr8.2:61215559-61215578 | MS.gene016607:CDS | 35.0% | |
| TGTGTTTCAGAATTGCAACT+TGG | - | chr8.2:61215861-61215880 | MS.gene016607:CDS | 35.0% | |
| TTGGCTACTGTGAATATAAG+TGG | - | chr8.2:61215777-61215796 | MS.gene016607:CDS | 35.0% | |
| ! | TGAAGATGAACTTGCTTACT+TGG | - | chr8.2:61215758-61215777 | MS.gene016607:CDS | 35.0% |
| ! | TTCATCAAGACTCGAGTTTT+TGG | - | chr8.2:61214670-61214689 | MS.gene016607:CDS | 35.0% |
| ! | TTTAGGGTTTGTCAAGATTG+TGG | - | chr8.2:61214816-61214835 | MS.gene016607:intron | 35.0% |
| !! | AGTTGCAATTCTGAAACACA+AGG | + | chr8.2:61215861-61215880 | None:intergenic | 35.0% |
| !! | TCATCATTACTTGTTGTGGT+TGG | + | chr8.2:61214710-61214729 | None:intergenic | 35.0% |
| !!! | TGTTAGGGTTTTGATGATGA+GGG | + | chr8.2:61214635-61214654 | None:intergenic | 35.0% |
| !!! | TTGTTAGGGTTTTGATGATG+AGG | + | chr8.2:61214636-61214655 | None:intergenic | 35.0% |
| ATGTTCTTCCTCTGCAATTG+AGG | - | chr8.2:61215914-61215933 | MS.gene016607:CDS | 40.0% | |
| GATGAAGGTAAGGGAAGATT+TGG | + | chr8.2:61214561-61214580 | None:intergenic | 40.0% | |
| GTGAGGAAAATGGTGAGTTT+AGG | - | chr8.2:61214799-61214818 | MS.gene016607:intron | 40.0% | |
| TCATCATCAGCACTAAGTGT+TGG | - | chr8.2:61214576-61214595 | MS.gene016607:CDS | 40.0% | |
| TGTTTGTGAATTGCAGATCC+TGG | - | chr8.2:61215657-61215676 | MS.gene016607:CDS | 40.0% | |
| TTAATAGAAAAATGCCCCGG+AGG | - | chr8.2:61215562-61215581 | MS.gene016607:CDS | 40.0% | |
| ! | ATAACTAGCTCTTGTCACCA+AGG | - | chr8.2:61215119-61215138 | MS.gene016607:intron | 40.0% |
| ! | CAACTTGGAAGTAATGGAAG+TGG | - | chr8.2:61215876-61215895 | MS.gene016607:CDS | 40.0% |
| ! | TGTAATCATAGGTGTCGTGT+CGG | - | chr8.2:61215299-61215318 | MS.gene016607:CDS | 40.0% |
| ! | TGTTGGTTGTGAAGTGATGA+AGG | + | chr8.2:61214510-61214529 | None:intergenic | 40.0% |
| !! | AAACTTGATGATGGGTTGTG+AGG | - | chr8.2:61214782-61214801 | MS.gene016607:intron | 40.0% |
| !! | ACACTTAGTGCTGATGATGA+AGG | + | chr8.2:61214576-61214595 | None:intergenic | 40.0% |
| !! | AGATGCAGGACTTGTTGTAA+AGG | - | chr8.2:61214870-61214889 | MS.gene016607:intron | 40.0% |
| !! | AGTGCTGATGATGAAGGTAA+GGG | + | chr8.2:61214570-61214589 | None:intergenic | 40.0% |
| !! | ATGATGGGTTGTGAGGAAAA+TGG | - | chr8.2:61214789-61214808 | MS.gene016607:intron | 40.0% |
| !! | TAGTGCTGATGATGAAGGTA+AGG | + | chr8.2:61214571-61214590 | None:intergenic | 40.0% |
| AGTTGGAACCTCAATTGCAG+AGG | + | chr8.2:61215925-61215944 | None:intergenic | 45.0% | |
| CACGACACCTATGATTACAC+TGG | + | chr8.2:61215298-61215317 | None:intergenic | 45.0% | |
| CATGTTAGGCCTAAGAGACT+TGG | - | chr8.2:61214467-61214486 | MS.gene016607:CDS | 45.0% | |
| CTATGGCACTTGAAAACAGC+AGG | + | chr8.2:61215717-61215736 | None:intergenic | 45.0% | |
| GTCAGAGAGGTAGACACAAT+TGG | - | chr8.2:61215599-61215618 | MS.gene016607:CDS | 45.0% | |
| TGCCAACAGCAGATACTCTA+TGG | + | chr8.2:61215734-61215753 | None:intergenic | 45.0% | |
| TGTCCGTGTTTCATAGGTCT+CGG | + | chr8.2:61215214-61215233 | None:intergenic | 45.0% | |
| ! | AGAGTATCTGCTGTTGGCAA+TGG | - | chr8.2:61215735-61215754 | MS.gene016607:CDS | 45.0% |
| ! | TGCCATAGAGTATCTGCTGT+TGG | - | chr8.2:61215729-61215748 | MS.gene016607:CDS | 45.0% |
| !! | AGGACTTGTTGTAAAGGTCG+TGG | - | chr8.2:61214876-61214895 | MS.gene016607:intron | 45.0% |
| !! | ATTTAGTCTCAGAGGTGTCC+TGG | + | chr8.2:61215357-61215376 | None:intergenic | 45.0% |
| !! | TCAGCACTAAGTGTTGGTCT+TGG | - | chr8.2:61214582-61214601 | MS.gene016607:CDS | 45.0% |
| !! | TTGATGATGAGGGTGAGTAG+TGG | + | chr8.2:61214625-61214644 | None:intergenic | 45.0% |
| CGAACACGAACATACCGACA+CGG | - | chr8.2:61215246-61215265 | MS.gene016607:intron | 50.0% | |
| CTTCAGCCACCATCATACTC+CGG | + | chr8.2:61214959-61214978 | None:intergenic | 50.0% | |
| GAAGCAGGGTAAGCACTAGT+TGG | + | chr8.2:61215942-61215961 | None:intergenic | 50.0% | |
| GATGAGGGTGAGTAGTGGTT+AGG | + | chr8.2:61214620-61214639 | None:intergenic | 50.0% | |
| GGCAAAGTCTGCTTGAAACC+AGG | + | chr8.2:61215678-61215697 | None:intergenic | 50.0% | |
| GGTGAGTAGTGGTTAGGAGT+GGG | + | chr8.2:61214614-61214633 | None:intergenic | 50.0% | |
| GTCTGGTGTCCGTGTTTCAT+AGG | + | chr8.2:61215220-61215239 | None:intergenic | 50.0% | |
| GTGCTTCTTCTGGTACCAAG+AGG | - | chr8.2:61214997-61215016 | MS.gene016607:intron | 50.0% | |
| GTTGTGGTTGGCACATCTTG+AGG | + | chr8.2:61214698-61214717 | None:intergenic | 50.0% | |
| TGGCCGAGACCTATGAAACA+CGG | - | chr8.2:61215208-61215227 | MS.gene016607:intron | 50.0% | |
| ! | CATAGGTGTCGTGTCGGTAT+CGG | - | chr8.2:61215305-61215324 | MS.gene016607:CDS | 50.0% |
| ! | CGTGAAGAGTACGTGGATAC+CGG | - | chr8.2:61214917-61214936 | MS.gene016607:intron | 50.0% |
| ! | GTACTCACGTGAAGAGTACG+TGG | - | chr8.2:61214910-61214929 | MS.gene016607:intron | 50.0% |
| !! | AGTATGATGGTGGCTGAAGG+TGG | - | chr8.2:61214960-61214979 | MS.gene016607:intron | 50.0% |
| !! | AGTGATGGTGGTGCTTCTTC+TGG | - | chr8.2:61214987-61215006 | MS.gene016607:intron | 50.0% |
| AGAAAAATGCCCCGGAGGCA+TGG | - | chr8.2:61215567-61215586 | MS.gene016607:CDS | 55.0% | |
| ATGGTCGTCACTCGTCAGAG+AGG | - | chr8.2:61215586-61215605 | MS.gene016607:CDS | 55.0% | |
| GAAGGTGGTGACAGTGATGG+TGG | - | chr8.2:61214975-61214994 | MS.gene016607:intron | 55.0% | |
| GCTGAAGGTGGTGACAGTGA+TGG | - | chr8.2:61214972-61214991 | MS.gene016607:intron | 55.0% | |
| GGGTGAGTAGTGGTTAGGAG+TGG | + | chr8.2:61214615-61214634 | None:intergenic | 55.0% | |
| GTTCGTGTTCGTGTCGTGTC+TGG | + | chr8.2:61215237-61215256 | None:intergenic | 55.0% | |
| !! | CGGAGTATGATGGTGGCTGA+AGG | - | chr8.2:61214957-61214976 | MS.gene016607:intron | 55.0% |
| !! | TCTCAGAGGTGTCCTGGTGT+CGG | + | chr8.2:61215351-61215370 | None:intergenic | 55.0% |
| !! | TGTCGTGTCGGTATCGGTGT+TGG | - | chr8.2:61215311-61215330 | MS.gene016607:CDS | 55.0% |
| ACGAGTGACGACCATGCCTC+CGG | + | chr8.2:61215581-61215600 | None:intergenic | 60.0% | |
| ATCGACGTGTGTCCGACACC+AGG | - | chr8.2:61215336-61215355 | MS.gene016607:CDS | 60.0% | |
| !! | CGTGGATACCGGCTTCGATG+AGG | - | chr8.2:61214928-61214947 | MS.gene016607:intron | 60.0% |
| !! | GATACCGGCTTCGATGAGGC+GGG | - | chr8.2:61214932-61214951 | MS.gene016607:intron | 60.0% |
| !! | GGATACCGGCTTCGATGAGG+CGG | - | chr8.2:61214931-61214950 | MS.gene016607:intron | 60.0% |
| CGAGTGACGACCATGCCTCC+GGG | + | chr8.2:61215580-61215599 | None:intergenic | 65.0% | |
| GAGGCGGGACCGGAGTATGA+TGG | - | chr8.2:61214947-61214966 | MS.gene016607:intron | 65.0% | |
| GAGTGACGACCATGCCTCCG+GGG | + | chr8.2:61215579-61215598 | None:intergenic | 65.0% | |
| GCGGGACCGGAGTATGATGG+TGG | - | chr8.2:61214950-61214969 | MS.gene016607:intron | 65.0% | |
| CGGCTTCGATGAGGCGGGAC+CGG | - | chr8.2:61214937-61214956 | MS.gene016607:intron | 70.0% | |
| CGGTCCCGCCTCATCGAAGC+CGG | + | chr8.2:61214939-61214958 | None:intergenic | 70.0% | |
| GCAGGCGCGCGAACATAGCG+AGG | + | chr8.2:61215699-61215718 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 61214462 | 61215971 | 61214462 | ID=MS.gene016607 |
| chr8.2 | mRNA | 61214462 | 61215971 | 61214462 | ID=MS.gene016607.t1;Parent=MS.gene016607 |
| chr8.2 | exon | 61215293 | 61215971 | 61215293 | ID=MS.gene016607.t1.exon1;Parent=MS.gene016607.t1 |
| chr8.2 | CDS | 61215293 | 61215971 | 61215293 | ID=cds.MS.gene016607.t1;Parent=MS.gene016607.t1 |
| chr8.2 | exon | 61214462 | 61214760 | 61214462 | ID=MS.gene016607.t1.exon2;Parent=MS.gene016607.t1 |
| chr8.2 | CDS | 61214462 | 61214760 | 61214462 | ID=cds.MS.gene016607.t1;Parent=MS.gene016607.t1 |
| Gene Sequence |
| Protein sequence |
