Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016614.t1 | XP_003627814.1 | 95.6 | 160 | 7 | 0 | 1 | 160 | 1 | 160 | 4.90E-78 | 300.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016614.t1 | Q4GZK2 | 70.0 | 160 | 43 | 2 | 1 | 159 | 1 | 156 | 2.9e-55 | 216.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016614.t1 | Q1RU46 | 95.6 | 160 | 7 | 0 | 1 | 160 | 1 | 160 | 3.5e-78 | 300.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene016614.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016614.t1 | MTR_8g038620 | 95.625 | 160 | 7 | 0 | 1 | 160 | 1 | 160 | 3.20e-111 | 313 |
MS.gene016614.t1 | MTR_7g490310 | 73.718 | 156 | 40 | 1 | 1 | 155 | 1 | 156 | 1.02e-82 | 244 |
MS.gene016614.t1 | MTR_6g007460 | 58.768 | 211 | 26 | 3 | 1 | 158 | 3 | 205 | 4.40e-76 | 226 |
MS.gene016614.t1 | MTR_3g015490 | 76.282 | 156 | 30 | 4 | 8 | 161 | 3 | 153 | 1.84e-75 | 223 |
MS.gene016614.t1 | MTR_3g088630 | 58.125 | 160 | 56 | 2 | 6 | 155 | 19 | 177 | 4.38e-59 | 184 |
MS.gene016614.t1 | MTR_5g036480 | 57.042 | 142 | 57 | 1 | 8 | 149 | 15 | 152 | 2.50e-52 | 166 |
MS.gene016614.t1 | MTR_4g106590 | 58.000 | 150 | 52 | 3 | 4 | 151 | 21 | 161 | 1.83e-51 | 164 |
MS.gene016614.t1 | MTR_1g049100 | 59.155 | 142 | 52 | 2 | 8 | 149 | 7 | 142 | 3.07e-51 | 162 |
MS.gene016614.t1 | MTR_3g078613 | 54.362 | 149 | 58 | 2 | 4 | 151 | 18 | 157 | 2.39e-50 | 160 |
MS.gene016614.t1 | MTR_3g078613 | 54.000 | 150 | 58 | 3 | 4 | 151 | 18 | 158 | 1.59e-48 | 155 |
MS.gene016614.t1 | MTR_3g093860 | 57.246 | 138 | 49 | 3 | 10 | 145 | 19 | 148 | 3.77e-48 | 153 |
MS.gene016614.t1 | MTR_4g051330 | 83.582 | 67 | 10 | 1 | 95 | 161 | 77 | 142 | 4.05e-31 | 110 |
MS.gene016614.t1 | MTR_8g079940 | 30.556 | 144 | 80 | 3 | 11 | 154 | 31 | 154 | 2.07e-14 | 70.1 |
MS.gene016614.t1 | MTR_8g024260 | 28.058 | 139 | 83 | 1 | 11 | 149 | 38 | 159 | 6.42e-14 | 68.6 |
MS.gene016614.t1 | MTR_7g117705 | 31.159 | 138 | 76 | 3 | 11 | 148 | 11 | 129 | 4.36e-13 | 66.2 |
MS.gene016614.t1 | MTR_1g013180 | 31.159 | 138 | 75 | 3 | 11 | 148 | 162 | 279 | 1.16e-12 | 65.1 |
MS.gene016614.t1 | MTR_1g013170 | 30.435 | 138 | 76 | 3 | 11 | 148 | 11 | 128 | 2.44e-12 | 63.9 |
MS.gene016614.t1 | MTR_3g086100 | 28.472 | 144 | 83 | 3 | 11 | 154 | 19 | 142 | 2.69e-12 | 63.9 |
MS.gene016614.t1 | MTR_3g092780 | 27.027 | 148 | 91 | 2 | 11 | 158 | 58 | 188 | 3.57e-12 | 63.5 |
MS.gene016614.t1 | MTR_4g061360 | 30.147 | 136 | 78 | 2 | 11 | 146 | 91 | 209 | 6.38e-12 | 62.8 |
MS.gene016614.t1 | MTR_3g092780 | 27.338 | 139 | 84 | 2 | 11 | 149 | 58 | 179 | 1.01e-11 | 62.4 |
MS.gene016614.t1 | MTR_1g032570 | 27.586 | 145 | 85 | 3 | 11 | 155 | 17 | 141 | 1.03e-11 | 62.4 |
MS.gene016614.t1 | MTR_3g092780 | 26.667 | 150 | 93 | 2 | 9 | 158 | 56 | 188 | 1.26e-11 | 62.0 |
MS.gene016614.t1 | MTR_4g131580 | 27.083 | 144 | 85 | 3 | 11 | 154 | 23 | 146 | 2.32e-11 | 61.2 |
MS.gene016614.t1 | MTR_4g121020 | 27.972 | 143 | 83 | 3 | 9 | 151 | 35 | 157 | 2.46e-11 | 61.2 |
MS.gene016614.t1 | MTR_4g121020 | 27.972 | 143 | 83 | 3 | 9 | 151 | 35 | 157 | 2.58e-11 | 61.2 |
MS.gene016614.t1 | MTR_1g067110 | 27.941 | 136 | 81 | 1 | 11 | 146 | 87 | 205 | 3.87e-11 | 60.5 |
MS.gene016614.t1 | MTR_1g067110 | 27.941 | 136 | 81 | 1 | 11 | 146 | 87 | 205 | 4.11e-11 | 60.5 |
MS.gene016614.t1 | MTR_3g092780 | 27.143 | 140 | 85 | 2 | 9 | 148 | 56 | 178 | 5.40e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016614.t1 | AT2G41310 | 65.000 | 160 | 56 | 0 | 1 | 160 | 1 | 160 | 6.90e-75 | 223 |
MS.gene016614.t1 | AT3G57040 | 68.153 | 157 | 42 | 2 | 1 | 152 | 1 | 154 | 1.15e-73 | 221 |
MS.gene016614.t1 | AT3G57040 | 68.153 | 157 | 42 | 2 | 1 | 152 | 1 | 154 | 1.15e-73 | 221 |
MS.gene016614.t1 | AT1G59940 | 59.333 | 150 | 52 | 3 | 7 | 155 | 31 | 172 | 1.42e-55 | 174 |
MS.gene016614.t1 | AT1G59940 | 59.333 | 150 | 52 | 3 | 7 | 155 | 123 | 264 | 7.37e-54 | 173 |
MS.gene016614.t1 | AT1G10470 | 60.000 | 140 | 48 | 1 | 7 | 146 | 18 | 149 | 1.14e-53 | 170 |
MS.gene016614.t1 | AT1G10470 | 60.000 | 140 | 48 | 1 | 7 | 146 | 32 | 163 | 1.29e-53 | 171 |
MS.gene016614.t1 | AT3G48100 | 56.081 | 148 | 56 | 2 | 2 | 148 | 18 | 157 | 2.19e-53 | 167 |
MS.gene016614.t1 | AT5G62920 | 58.741 | 143 | 51 | 1 | 4 | 146 | 20 | 154 | 1.21e-52 | 166 |
MS.gene016614.t1 | AT1G19050 | 54.861 | 144 | 57 | 1 | 8 | 151 | 23 | 158 | 9.46e-52 | 164 |
MS.gene016614.t1 | AT3G56380 | 53.793 | 145 | 60 | 1 | 4 | 148 | 15 | 152 | 1.71e-51 | 161 |
MS.gene016614.t1 | AT1G74890 | 53.741 | 147 | 60 | 1 | 8 | 154 | 17 | 155 | 2.38e-50 | 160 |
MS.gene016614.t1 | AT2G40670 | 53.147 | 143 | 62 | 2 | 6 | 148 | 26 | 163 | 7.40e-50 | 158 |
MS.gene016614.t1 | AT3G56380 | 53.425 | 146 | 60 | 2 | 4 | 148 | 15 | 153 | 1.19e-49 | 157 |
MS.gene016614.t1 | AT2G40670 | 52.778 | 144 | 62 | 3 | 6 | 148 | 26 | 164 | 4.67e-48 | 153 |
MS.gene016614.t1 | AT2G07440 | 66.154 | 65 | 22 | 0 | 95 | 159 | 9 | 73 | 8.29e-26 | 95.9 |
MS.gene016614.t1 | AT1G10470 | 64.151 | 53 | 19 | 0 | 94 | 146 | 35 | 87 | 8.88e-18 | 76.6 |
MS.gene016614.t1 | AT1G67710 | 30.496 | 141 | 78 | 3 | 11 | 151 | 13 | 133 | 1.30e-13 | 67.8 |
MS.gene016614.t1 | AT5G07210 | 31.655 | 139 | 74 | 3 | 10 | 148 | 17 | 134 | 5.64e-13 | 65.9 |
MS.gene016614.t1 | AT2G25180 | 29.333 | 150 | 82 | 4 | 3 | 148 | 7 | 136 | 6.35e-13 | 65.9 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.10e-12 | 65.1 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.10e-12 | 65.1 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.10e-12 | 65.1 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 1.45e-12 | 64.7 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 2.60e-12 | 63.9 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 2.60e-12 | 63.9 |
MS.gene016614.t1 | AT5G60100 | 30.882 | 136 | 77 | 2 | 11 | 146 | 66 | 184 | 2.60e-12 | 63.9 |
MS.gene016614.t1 | AT5G02810 | 28.676 | 136 | 80 | 3 | 11 | 146 | 80 | 198 | 1.21e-11 | 62.0 |
MS.gene016614.t1 | AT3G16857 | 27.273 | 143 | 84 | 3 | 9 | 151 | 37 | 159 | 5.69e-11 | 60.1 |
MS.gene016614.t1 | AT3G16857 | 27.273 | 143 | 84 | 3 | 9 | 151 | 37 | 159 | 5.89e-11 | 60.1 |
Find 32 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATAGTTGAACTGGTTTC+AGG | 0.180778 | 8.2:-61350816 | None:intergenic |
AGGCATGTCTTTGAAAGATT+TGG | 0.248483 | 8.2:-61350531 | None:intergenic |
CCTCACCTGTTTATCCTAGA+TGG | 0.262329 | 8.2:-61350581 | None:intergenic |
AGAGAATCAGTTTCATGTTT+TGG | 0.278264 | 8.2:+61349086 | MS.gene016614:CDS |
AGTAAGGCCTTGAAATTTCT+TGG | 0.299900 | 8.2:+61349340 | MS.gene016614:CDS |
TATTGCTTCAGAAATTAATC+AGG | 0.389954 | 8.2:+61349399 | MS.gene016614:CDS |
TGATTAATTTCTGAAGCAAT+AGG | 0.390281 | 8.2:-61349397 | None:intergenic |
TACAGTTGATTCCGCTAGTA+AGG | 0.395161 | 8.2:+61349324 | MS.gene016614:CDS |
TTTACATCTGATAGTTGAAC+TGG | 0.396004 | 8.2:-61350823 | None:intergenic |
ATGTTCCATCTAGGATAAAC+AGG | 0.425302 | 8.2:+61350576 | MS.gene016614:CDS |
AAGCAAACCAAGAAATTTCA+AGG | 0.430996 | 8.2:-61349347 | None:intergenic |
TATTGTATGCCAGGGATGAC+TGG | 0.449232 | 8.2:+61349542 | MS.gene016614:CDS |
ATAACAGATTATTGTATGCC+AGG | 0.463952 | 8.2:+61349533 | MS.gene016614:CDS |
GAAATTTCTTGGTTTGCTTG+AGG | 0.464582 | 8.2:+61349351 | MS.gene016614:CDS |
TTTGTTGAAATCAAAAGTTA+AGG | 0.471711 | 8.2:+61350861 | MS.gene016614:CDS |
AACAACCTATCAACATCAAA+AGG | 0.480816 | 8.2:+61350893 | MS.gene016614:CDS |
TTGTAATTGTATCAGATGTT+TGG | 0.481004 | 8.2:+61350771 | MS.gene016614:intron |
TCTGAGGACATTATCACAAC+AGG | 0.481384 | 8.2:-61350551 | None:intergenic |
CCTCAGAGAATGTTCCATCT+AGG | 0.494035 | 8.2:+61350567 | MS.gene016614:CDS |
TGTATCAGATGTTTGGAAGA+GGG | 0.502137 | 8.2:+61350778 | MS.gene016614:intron |
TTGTATCAGATGTTTGGAAG+AGG | 0.508259 | 8.2:+61350777 | MS.gene016614:intron |
TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 8.2:+61349127 | MS.gene016614:CDS |
AGATCATAGCCAGTCATCCC+TGG | 0.546401 | 8.2:-61349551 | None:intergenic |
TATCTTTCAAGTAATGGGCA+TGG | 0.552535 | 8.2:+61349059 | None:intergenic |
TAACAGATTATTGTATGCCA+GGG | 0.564090 | 8.2:+61349534 | MS.gene016614:CDS |
ACCTATCAACATCAAAAGGT+AGG | 0.568756 | 8.2:+61350897 | MS.gene016614:CDS |
GTTTGCTTGAGGATGAAATG+AGG | 0.583679 | 8.2:+61349362 | MS.gene016614:CDS |
CCTATCAACATCAAAAGGTA+GGG | 0.589832 | 8.2:+61350898 | MS.gene016614:CDS |
GTATCAGATGTTTGGAAGAG+GGG | 0.607171 | 8.2:+61350779 | MS.gene016614:intron |
TATCAGATGTTTGGAAGAGG+GGG | 0.611980 | 8.2:+61350780 | MS.gene016614:intron |
AAATTTCAAGGCCTTACTAG+CGG | 0.637282 | 8.2:-61349335 | None:intergenic |
CCTAGATGGAACATTCTCTG+AGG | 0.709864 | 8.2:-61350567 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATAAGATAATAATTTTTC+GGG | + | chr8.2:61349948-61349967 | MS.gene016614:intron | 10.0% |
!!! | TATTAATTTATGATTTTCTT+AGG | - | chr8.2:61349996-61350015 | None:intergenic | 10.0% |
!! | TACTGAATTGATAAATATTA+TGG | + | chr8.2:61349432-61349451 | MS.gene016614:intron | 15.0% |
!! | TCTAAATTAATAAATTTCTC+CGG | + | chr8.2:61350281-61350300 | MS.gene016614:intron | 15.0% |
!!! | AAACTCTTTAATTTAATACT+CGG | + | chr8.2:61349844-61349863 | MS.gene016614:intron | 15.0% |
!!! | AGATTAGTTAATTGAAAATT+TGG | - | chr8.2:61350383-61350402 | None:intergenic | 15.0% |
!!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr8.2:61349920-61349939 | None:intergenic | 15.0% |
!!! | ATTATTTTGCTTTTCTATTT+AGG | + | chr8.2:61349735-61349754 | MS.gene016614:intron | 15.0% |
!!! | GATTAGTTAATTGAAAATTT+GGG | - | chr8.2:61350382-61350401 | None:intergenic | 15.0% |
!!! | TCTAAAATAATAAATTTGTC+CGG | + | chr8.2:61349882-61349901 | MS.gene016614:intron | 15.0% |
!!! | TTGTATAGTCTATTATTTTT+TGG | + | chr8.2:61349243-61349262 | MS.gene016614:intron | 15.0% |
!! | CTCTATAAATTAATAATGTC+AGG | - | chr8.2:61350308-61350327 | None:intergenic | 20.0% |
!! | TAGGAAACAATTTAGAAAAT+AGG | + | chr8.2:61349754-61349773 | MS.gene016614:intron | 20.0% |
!! | TTTGTTGAAATCAAAAGTTA+AGG | + | chr8.2:61350861-61350880 | MS.gene016614:CDS | 20.0% |
! | ATATTAGATTAACCGTGTTA+TGG | - | chr8.2:61350617-61350636 | None:intergenic | 25.0% |
! | TAAATTAATAATGTCAGGAC+CGG | - | chr8.2:61350303-61350322 | None:intergenic | 25.0% |
! | TAGACTAATCAAATAACTAG+TGG | - | chr8.2:61349639-61349658 | None:intergenic | 25.0% |
! | TATTGCTTCAGAAATTAATC+AGG | + | chr8.2:61349399-61349418 | MS.gene016614:CDS | 25.0% |
! | TTGAATGCATCAAAAAAGTT+TGG | + | chr8.2:61349708-61349727 | MS.gene016614:intron | 25.0% |
! | TTGTAATTGTATCAGATGTT+TGG | + | chr8.2:61350771-61350790 | MS.gene016614:intron | 25.0% |
! | TTTGATTCAATTATTCATGC+AGG | + | chr8.2:61349490-61349509 | MS.gene016614:intron | 25.0% |
!! | CATTAAAAGAAGAAGTTTTG+AGG | - | chr8.2:61349155-61349174 | None:intergenic | 25.0% |
!! | CTCAAAACTTCTTCTTTTAA+TGG | + | chr8.2:61349153-61349172 | MS.gene016614:CDS | 25.0% |
!! | GGAAATTTTATACCATAACA+CGG | + | chr8.2:61350602-61350621 | MS.gene016614:intron | 25.0% |
!!! | ACTTTTGATTTCAACAAATG+TGG | - | chr8.2:61350859-61350878 | None:intergenic | 25.0% |
!!! | TGATTAATTTCTGAAGCAAT+AGG | - | chr8.2:61349400-61349419 | None:intergenic | 25.0% |
AACAACCTATCAACATCAAA+AGG | + | chr8.2:61350893-61350912 | MS.gene016614:CDS | 30.0% | |
AAGCAAACCAAGAAATTTCA+AGG | - | chr8.2:61349350-61349369 | None:intergenic | 30.0% | |
ACTCTACATACCAAACAAAA+AGG | - | chr8.2:61350200-61350219 | None:intergenic | 30.0% | |
ATAAAAGTTCATTGATCTGC+AGG | + | chr8.2:61350505-61350524 | MS.gene016614:intron | 30.0% | |
ATAACAGATTATTGTATGCC+AGG | + | chr8.2:61349533-61349552 | MS.gene016614:CDS | 30.0% | |
ATCACTTCTCACAATTGATT+TGG | + | chr8.2:61350349-61350368 | MS.gene016614:intron | 30.0% | |
ATGCTTTCCATGAACAATTT+CGG | - | chr8.2:61350410-61350429 | None:intergenic | 30.0% | |
CAAAAGTGAGGAAAAAATTG+TGG | - | chr8.2:61349684-61349703 | None:intergenic | 30.0% | |
CTGATACAATTACAAACAAC+TGG | - | chr8.2:61350766-61350785 | None:intergenic | 30.0% | |
GCATTCAAATTTCAAAAGTG+AGG | - | chr8.2:61349696-61349715 | None:intergenic | 30.0% | |
GTACAGTAAATGTAATCAAG+AGG | - | chr8.2:61350069-61350088 | None:intergenic | 30.0% | |
TAACAGATTATTGTATGCCA+GGG | + | chr8.2:61349534-61349553 | MS.gene016614:CDS | 30.0% | |
TGATCTGTTGAGAAAAATCA+AGG | + | chr8.2:61349568-61349587 | MS.gene016614:CDS | 30.0% | |
TTAGGACCGAAAATCATAAA+GGG | - | chr8.2:61349978-61349997 | None:intergenic | 30.0% | |
TTTACATCTGATAGTTGAAC+TGG | - | chr8.2:61350826-61350845 | None:intergenic | 30.0% | |
! | AGAGAATCAGTTTCATGTTT+TGG | + | chr8.2:61349086-61349105 | MS.gene016614:CDS | 30.0% |
! | TTGATAGAATGTTGATTGAG+AGG | + | chr8.2:61349127-61349146 | MS.gene016614:CDS | 30.0% |
!! | GACTAATTTGCCTTTTTGTT+TGG | + | chr8.2:61350187-61350206 | MS.gene016614:intron | 30.0% |
AAATTTCAAGGCCTTACTAG+CGG | - | chr8.2:61349338-61349357 | None:intergenic | 35.0% | |
ACTACTGTGTTCATATGCAT+TGG | - | chr8.2:61350113-61350132 | None:intergenic | 35.0% | |
AGTAAGGCCTTGAAATTTCT+TGG | + | chr8.2:61349340-61349359 | MS.gene016614:CDS | 35.0% | |
CTGTTGAGAAAAATCAAGGT+AGG | + | chr8.2:61349572-61349591 | MS.gene016614:intron | 35.0% | |
CTTAGGACCGAAAATCATAA+AGG | - | chr8.2:61349979-61349998 | None:intergenic | 35.0% | |
TCTCAATCCGAAATTGTTCA+TGG | + | chr8.2:61350400-61350419 | MS.gene016614:intron | 35.0% | |
TGTATCAGATGTTTGGAAGA+GGG | + | chr8.2:61350778-61350797 | MS.gene016614:intron | 35.0% | |
TTGTATCAGATGTTTGGAAG+AGG | + | chr8.2:61350777-61350796 | MS.gene016614:intron | 35.0% | |
! | AGGCATGTCTTTGAAAGATT+TGG | - | chr8.2:61350534-61350553 | None:intergenic | 35.0% |
! | ATGTTCCATCTAGGATAAAC+AGG | + | chr8.2:61350576-61350595 | MS.gene016614:CDS | 35.0% |
! | GGAGATCCCTTTATGATTTT+CGG | + | chr8.2:61349969-61349988 | MS.gene016614:intron | 35.0% |
!! | GAAATTTCTTGGTTTGCTTG+AGG | + | chr8.2:61349351-61349370 | MS.gene016614:CDS | 35.0% |
!!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr8.2:61349910-61349929 | None:intergenic | 35.0% |
AATTACATTGCAGCGAACCT+TGG | - | chr8.2:61350155-61350174 | None:intergenic | 40.0% | |
ATTACATTGCAGCGAACCTT+GGG | - | chr8.2:61350154-61350173 | None:intergenic | 40.0% | |
CGCTGCAATGTAATTCTAAG+AGG | + | chr8.2:61350160-61350179 | MS.gene016614:intron | 40.0% | |
CTAATTTACGTTGAGTCCCA+AGG | + | chr8.2:61350135-61350154 | MS.gene016614:intron | 40.0% | |
GTATCAGATGTTTGGAAGAG+GGG | + | chr8.2:61350779-61350798 | MS.gene016614:intron | 40.0% | |
GTTTGCTTGAGGATGAAATG+AGG | + | chr8.2:61349362-61349381 | MS.gene016614:CDS | 40.0% | |
TATCAGATGTTTGGAAGAGG+GGG | + | chr8.2:61350780-61350799 | MS.gene016614:intron | 40.0% | |
TCTGAGGACATTATCACAAC+AGG | - | chr8.2:61350554-61350573 | None:intergenic | 40.0% | |
! | CTGATAGTTGAACTGGTTTC+AGG | - | chr8.2:61350819-61350838 | None:intergenic | 40.0% |
! | TACAGTTGATTCCGCTAGTA+AGG | + | chr8.2:61349324-61349343 | MS.gene016614:CDS | 40.0% |
! | TTTTTACATTGGCCCAAGTC+GGG | - | chr8.2:61349909-61349928 | None:intergenic | 40.0% |
CCTAGATGGAACATTCTCTG+AGG | - | chr8.2:61350570-61350589 | None:intergenic | 45.0% | |
CCTCACCTGTTTATCCTAGA+TGG | - | chr8.2:61350584-61350603 | None:intergenic | 45.0% | |
CCTCAGAGAATGTTCCATCT+AGG | + | chr8.2:61350567-61350586 | MS.gene016614:CDS | 45.0% | |
TATTGTATGCCAGGGATGAC+TGG | + | chr8.2:61349542-61349561 | MS.gene016614:CDS | 45.0% | |
! | CCATCTAGGATAAACAGGTG+AGG | + | chr8.2:61350581-61350600 | MS.gene016614:intron | 45.0% |
!!! | ATAATAAGATAATAATTTTT+CGG | + | chr8.2:61349947-61349966 | MS.gene016614:intron | 5.0% |
AAATTTGTCCGGTCCCGACT+TGG | + | chr8.2:61349893-61349912 | MS.gene016614:intron | 50.0% | |
AATTTGTCCGGTCCCGACTT+GGG | + | chr8.2:61349894-61349913 | MS.gene016614:intron | 50.0% | |
AGATCATAGCCAGTCATCCC+TGG | - | chr8.2:61349554-61349573 | None:intergenic | 50.0% | |
ACATTGGCCCAAGTCGGGAC+CGG | - | chr8.2:61349904-61349923 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 61349072 | 61350918 | 61349072 | ID=MS.gene016614 |
chr8.2 | mRNA | 61349072 | 61350918 | 61349072 | ID=MS.gene016614.t1;Parent=MS.gene016614 |
chr8.2 | exon | 61349072 | 61349174 | 61349072 | ID=MS.gene016614.t1.exon1;Parent=MS.gene016614.t1 |
chr8.2 | CDS | 61349072 | 61349174 | 61349072 | ID=cds.MS.gene016614.t1;Parent=MS.gene016614.t1 |
chr8.2 | exon | 61349320 | 61349420 | 61349320 | ID=MS.gene016614.t1.exon2;Parent=MS.gene016614.t1 |
chr8.2 | CDS | 61349320 | 61349420 | 61349320 | ID=cds.MS.gene016614.t1;Parent=MS.gene016614.t1 |
chr8.2 | exon | 61349512 | 61349589 | 61349512 | ID=MS.gene016614.t1.exon3;Parent=MS.gene016614.t1 |
chr8.2 | CDS | 61349512 | 61349589 | 61349512 | ID=cds.MS.gene016614.t1;Parent=MS.gene016614.t1 |
chr8.2 | exon | 61350527 | 61350597 | 61350527 | ID=MS.gene016614.t1.exon4;Parent=MS.gene016614.t1 |
chr8.2 | CDS | 61350527 | 61350597 | 61350527 | ID=cds.MS.gene016614.t1;Parent=MS.gene016614.t1 |
chr8.2 | exon | 61350786 | 61350918 | 61350786 | ID=MS.gene016614.t1.exon5;Parent=MS.gene016614.t1 |
chr8.2 | CDS | 61350786 | 61350918 | 61350786 | ID=cds.MS.gene016614.t1;Parent=MS.gene016614.t1 |
Gene Sequence |
Protein sequence |