Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016671.t1 | XP_013445060.1 | 95.2 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 3.10E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016671.t1 | Q9LXV5 | 36.6 | 268 | 137 | 10 | 2 | 245 | 5 | 263 | 4.7e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016671.t1 | A0A072TPE2 | 95.2 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 2.2e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016671.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016671.t1 | MTR_8g037270 | 95.238 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 0.0 | 582 |
| MS.gene016671.t1 | MTR_3g061510 | 45.933 | 209 | 91 | 5 | 21 | 209 | 20 | 226 | 3.82e-47 | 161 |
| MS.gene016671.t1 | MTR_3g061510 | 45.933 | 209 | 91 | 5 | 21 | 209 | 40 | 246 | 6.32e-47 | 161 |
| MS.gene016671.t1 | MTR_2g041090 | 49.669 | 151 | 67 | 4 | 114 | 259 | 33 | 179 | 4.99e-37 | 132 |
| MS.gene016671.t1 | MTR_2g030170 | 71.111 | 90 | 26 | 0 | 127 | 216 | 86 | 175 | 2.03e-36 | 129 |
| MS.gene016671.t1 | MTR_2g030170 | 73.494 | 83 | 22 | 0 | 134 | 216 | 126 | 208 | 8.52e-34 | 124 |
| MS.gene016671.t1 | MTR_8g019540 | 45.614 | 171 | 71 | 7 | 115 | 283 | 128 | 278 | 4.13e-33 | 124 |
| MS.gene016671.t1 | MTR_2g099490 | 59.223 | 103 | 39 | 2 | 115 | 216 | 134 | 234 | 6.82e-32 | 121 |
| MS.gene016671.t1 | MTR_2g099490 | 52.137 | 117 | 41 | 2 | 115 | 216 | 134 | 250 | 9.43e-31 | 118 |
| MS.gene016671.t1 | MTR_7g106450 | 51.200 | 125 | 47 | 5 | 98 | 219 | 118 | 231 | 1.72e-30 | 117 |
| MS.gene016671.t1 | MTR_1g056530 | 49.593 | 123 | 49 | 4 | 109 | 229 | 128 | 239 | 8.50e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016671.t1 | AT5G12840 | 38.430 | 242 | 122 | 7 | 27 | 245 | 25 | 262 | 1.79e-39 | 139 |
| MS.gene016671.t1 | AT5G12840 | 38.430 | 242 | 122 | 7 | 27 | 245 | 25 | 262 | 1.79e-39 | 139 |
| MS.gene016671.t1 | AT5G12840 | 47.917 | 144 | 74 | 1 | 103 | 245 | 120 | 263 | 4.33e-39 | 138 |
| MS.gene016671.t1 | AT5G12840 | 47.917 | 144 | 74 | 1 | 103 | 245 | 120 | 263 | 4.33e-39 | 138 |
| MS.gene016671.t1 | AT5G12840 | 47.917 | 144 | 74 | 1 | 103 | 245 | 120 | 263 | 4.33e-39 | 138 |
| MS.gene016671.t1 | AT3G20910 | 47.619 | 147 | 75 | 1 | 98 | 242 | 108 | 254 | 6.36e-39 | 139 |
| MS.gene016671.t1 | AT1G17590 | 46.857 | 175 | 70 | 9 | 51 | 216 | 74 | 234 | 1.48e-32 | 122 |
| MS.gene016671.t1 | AT1G17590 | 46.857 | 175 | 70 | 9 | 51 | 216 | 74 | 234 | 1.48e-32 | 122 |
| MS.gene016671.t1 | AT1G17590 | 46.857 | 175 | 70 | 9 | 51 | 216 | 74 | 234 | 1.48e-32 | 122 |
| MS.gene016671.t1 | AT1G17590 | 46.857 | 175 | 70 | 9 | 51 | 216 | 74 | 234 | 1.48e-32 | 122 |
| MS.gene016671.t1 | AT1G72830 | 56.250 | 112 | 46 | 3 | 115 | 223 | 137 | 248 | 2.21e-32 | 122 |
| MS.gene016671.t1 | AT1G30500 | 50.758 | 132 | 57 | 3 | 114 | 237 | 59 | 190 | 4.24e-31 | 115 |
| MS.gene016671.t1 | AT1G30500 | 62.245 | 98 | 30 | 2 | 147 | 237 | 89 | 186 | 6.01e-31 | 114 |
| MS.gene016671.t1 | AT1G72830 | 55.752 | 113 | 46 | 4 | 115 | 223 | 137 | 249 | 1.16e-30 | 118 |
| MS.gene016671.t1 | AT3G14020 | 59.794 | 97 | 36 | 2 | 129 | 224 | 145 | 239 | 1.57e-30 | 117 |
| MS.gene016671.t1 | AT3G14020 | 59.794 | 97 | 36 | 2 | 129 | 224 | 145 | 239 | 1.57e-30 | 117 |
| MS.gene016671.t1 | AT5G06510 | 36.453 | 203 | 85 | 7 | 30 | 213 | 13 | 190 | 5.87e-30 | 114 |
| MS.gene016671.t1 | AT5G06510 | 36.453 | 203 | 85 | 7 | 30 | 213 | 13 | 190 | 5.87e-30 | 114 |
| MS.gene016671.t1 | AT5G06510 | 36.453 | 203 | 85 | 7 | 30 | 213 | 13 | 190 | 5.87e-30 | 114 |
| MS.gene016671.t1 | AT5G06510 | 36.453 | 203 | 85 | 7 | 30 | 213 | 13 | 190 | 5.87e-30 | 114 |
| MS.gene016671.t1 | AT2G34720 | 46.154 | 143 | 70 | 4 | 102 | 239 | 45 | 185 | 1.12e-29 | 112 |
| MS.gene016671.t1 | AT2G34720 | 49.231 | 130 | 60 | 3 | 114 | 239 | 23 | 150 | 1.86e-29 | 110 |
| MS.gene016671.t1 | AT2G34720 | 49.231 | 130 | 60 | 3 | 114 | 239 | 23 | 150 | 1.86e-29 | 110 |
| MS.gene016671.t1 | AT3G05690 | 35.102 | 245 | 118 | 9 | 31 | 255 | 18 | 241 | 2.25e-29 | 113 |
| MS.gene016671.t1 | AT3G05690 | 32.959 | 267 | 138 | 9 | 9 | 255 | 33 | 278 | 2.61e-29 | 114 |
| MS.gene016671.t1 | AT1G54160 | 69.333 | 75 | 22 | 1 | 143 | 216 | 166 | 240 | 4.75e-29 | 113 |
| MS.gene016671.t1 | AT5G06510 | 55.102 | 98 | 29 | 3 | 119 | 213 | 10 | 95 | 5.58e-28 | 106 |
| MS.gene016671.t1 | AT5G06510 | 55.102 | 98 | 29 | 3 | 119 | 213 | 10 | 95 | 5.58e-28 | 106 |
| MS.gene016671.t1 | AT5G06510 | 55.102 | 98 | 29 | 3 | 119 | 213 | 56 | 141 | 2.32e-27 | 106 |
| MS.gene016671.t1 | AT1G72830 | 54.217 | 83 | 38 | 0 | 141 | 223 | 141 | 223 | 1.95e-22 | 95.1 |
Find 70 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTCCGTCTGCGAATT+TGG | 0.146875 | 8.3:+59101982 | None:intergenic |
| ATTCTCCAATCATCAGTTTC+TGG | 0.161621 | 8.3:+59102725 | None:intergenic |
| CCGAATTGTGCATTTGAATA+AGG | 0.229160 | 8.3:+59101864 | None:intergenic |
| GGTCAAATCTTGAATGCTTA+TGG | 0.231694 | 8.3:-59101843 | MS.gene016671:CDS |
| TCTAATGCTGCTCTAGAAAA+AGG | 0.271832 | 8.3:-59100275 | MS.gene016671:CDS |
| CAGCCTTGGTGGCTTGAAAA+TGG | 0.313297 | 8.3:-59102653 | MS.gene016671:CDS |
| AAACAGGAGGGTGACTTCTT+TGG | 0.313426 | 8.3:-59100104 | MS.gene016671:CDS |
| ACAGGGCATGTTTGATGTTT+CGG | 0.314790 | 8.3:+59102040 | None:intergenic |
| AGGCTGATGATGAGAGTAAA+TGG | 0.326121 | 8.3:+59102670 | None:intergenic |
| CTGATCAGTTGAAGATGGTT+TGG | 0.350260 | 8.3:+59102628 | None:intergenic |
| GCATTCTAGCATGATGCATT+TGG | 0.399038 | 8.3:+59100918 | None:intergenic |
| TTGAGAAGGGCAAGGGGAAA+TGG | 0.400323 | 8.3:-59100338 | MS.gene016671:CDS |
| TGTCACACATTCAGAGCCTT+TGG | 0.400488 | 8.3:-59102582 | MS.gene016671:CDS |
| GAAAGTTATTAAAGTTAGAA+AGG | 0.407898 | 8.3:-59100792 | MS.gene016671:intron |
| TGAGCCTTGATTCTCATTGT+TGG | 0.412750 | 8.3:+59100226 | None:intergenic |
| TGGTAAATGCGGTTGAGGAC+AGG | 0.424267 | 8.3:+59102022 | None:intergenic |
| TCATCAGTTTCTGGTTTCCC+TGG | 0.428859 | 8.3:+59102734 | None:intergenic |
| TTCACAGGCAAATGGAAAAC+AGG | 0.431715 | 8.3:-59100120 | MS.gene016671:CDS |
| AAAAGCTGTGAAAGGATGCC+AGG | 0.439397 | 8.3:-59102752 | None:intergenic |
| CCTTATTCAAATGCACAATT+CGG | 0.445518 | 8.3:-59101864 | MS.gene016671:CDS |
| ACTCTCATCATCAGCCTTGG+TGG | 0.446091 | 8.3:-59102664 | MS.gene016671:CDS |
| TTTAGCTGATCAGTTGAAGA+TGG | 0.474075 | 8.3:+59102623 | None:intergenic |
| GTTCGAGCTTCTTTGTATTG+AGG | 0.481503 | 8.3:+59100306 | None:intergenic |
| GCAGCACATGCACAAAATGC+AGG | 0.482353 | 8.3:-59100192 | MS.gene016671:CDS |
| CTATGTCATTCACAGGCAAA+TGG | 0.486227 | 8.3:-59100128 | MS.gene016671:CDS |
| TTTACTCTCATCATCAGCCT+TGG | 0.487165 | 8.3:-59102667 | MS.gene016671:CDS |
| GGAAACCAGAAACTGATGAT+TGG | 0.490368 | 8.3:-59102730 | MS.gene016671:CDS |
| AACAATACTGGTGCAACATC+GGG | 0.490937 | 8.3:-59100251 | MS.gene016671:CDS |
| GTCCATGGTAAATGCGGTTG+AGG | 0.491108 | 8.3:+59102017 | None:intergenic |
| TCTCAAAGCATGTTGGTGAC+GGG | 0.492087 | 8.3:+59100355 | None:intergenic |
| TTCTCAAAGCATGTTGGTGA+CGG | 0.494518 | 8.3:+59100354 | None:intergenic |
| TGACGGGATTCATGAAGATA+TGG | 0.495855 | 8.3:+59100371 | None:intergenic |
| AATTCGCAGACGGAACTTGT+TGG | 0.504090 | 8.3:-59101979 | MS.gene016671:CDS |
| GAGAATAAAACATAGTGAGC+AGG | 0.507446 | 8.3:-59102708 | MS.gene016671:CDS |
| CTCAGGTGGGGACGTTGCCA+AGG | 0.514046 | 8.3:-59102067 | MS.gene016671:intron |
| TTCAACATCAGTTACCATGA+TGG | 0.518987 | 8.3:-59100167 | MS.gene016671:CDS |
| GTCAATGCAAAGCAGTATCA+TGG | 0.520607 | 8.3:-59100860 | MS.gene016671:CDS |
| TGGACCAAGGTGTTTGTCCA+TGG | 0.523692 | 8.3:+59102002 | None:intergenic |
| TTTGATGTTTCGGTGCTCCT+TGG | 0.525070 | 8.3:+59102050 | None:intergenic |
| CAACAATACTGGTGCAACAT+CGG | 0.530920 | 8.3:-59100252 | MS.gene016671:CDS |
| TGCTTTGCATTGACATACAC+AGG | 0.531370 | 8.3:+59100869 | None:intergenic |
| GGTAAATGCGGTTGAGGACA+GGG | 0.539516 | 8.3:+59102023 | None:intergenic |
| TTGCCCTTCTCAAAGCATGT+TGG | 0.541677 | 8.3:+59100348 | None:intergenic |
| CTGTAAAGTCATTTCCATCA+TGG | 0.545256 | 8.3:+59100153 | None:intergenic |
| TACAGCACTATGTCATTCAC+AGG | 0.550828 | 8.3:-59100135 | MS.gene016671:CDS |
| TGCTTATGGACAACAAGCTA+TGG | 0.551820 | 8.3:-59101829 | MS.gene016671:intron |
| TTTGCCGCTTAAAATGGAAG+AGG | 0.565386 | 8.3:-59100894 | MS.gene016671:CDS |
| ACATGCTTTGAGAAGGGCAA+GGG | 0.570857 | 8.3:-59100345 | MS.gene016671:CDS |
| GTCACCAACATGCTTTGAGA+AGG | 0.572667 | 8.3:-59100352 | MS.gene016671:CDS |
| ACGAAGACAATCGCGTGCAA+AGG | 0.578373 | 8.3:-59100828 | MS.gene016671:CDS |
| GGTACCAACAATGAGAATCA+AGG | 0.578464 | 8.3:-59100230 | MS.gene016671:CDS |
| TTTACCATGGACAAACACCT+TGG | 0.581517 | 8.3:-59102006 | MS.gene016671:CDS |
| CATGCTTTGAGAAGGGCAAG+GGG | 0.591440 | 8.3:-59100344 | MS.gene016671:CDS |
| GATGCATTTGGTATAGCTGA+GGG | 0.592164 | 8.3:+59100930 | None:intergenic |
| TTATCAGTTAGAGAAAGTGA+AGG | 0.593911 | 8.3:+59102554 | None:intergenic |
| TGATGCATTTGGTATAGCTG+AGG | 0.596710 | 8.3:+59100929 | None:intergenic |
| GAAAGTGAAGGAGAAACCAA+AGG | 0.608239 | 8.3:+59102566 | None:intergenic |
| TCACCAACATGCTTTGAGAA+GGG | 0.609839 | 8.3:-59100351 | MS.gene016671:CDS |
| GTCCTCAACCGCATTTACCA+TGG | 0.610316 | 8.3:-59102019 | MS.gene016671:CDS |
| CTTTCTCTAACTGATAACTC+AGG | 0.610628 | 8.3:-59102548 | MS.gene016671:intron |
| TGATGAGAGTAAATGGAAGA+TGG | 0.612845 | 8.3:+59102677 | None:intergenic |
| CAGCACATGCACAAAATGCA+GGG | 0.616147 | 8.3:-59100191 | MS.gene016671:CDS |
| AAAGCTGTGAAAGGATGCCA+GGG | 0.629084 | 8.3:-59102751 | None:intergenic |
| AACATGCTTTGAGAAGGGCA+AGG | 0.629479 | 8.3:-59100346 | MS.gene016671:CDS |
| ACAGGCAAATGGAAAACAGG+AGG | 0.631076 | 8.3:-59100117 | MS.gene016671:CDS |
| CAGGCAAATGGAAAACAGGA+GGG | 0.651426 | 8.3:-59100116 | MS.gene016671:CDS |
| AGAAGGGCAAGGGGAAATGG+CGG | 0.651466 | 8.3:-59100335 | MS.gene016671:CDS |
| CCTTGGTCCAAATTCGCAGA+CGG | 0.654666 | 8.3:-59101989 | MS.gene016671:CDS |
| CCGTCTGCGAATTTGGACCA+AGG | 0.662623 | 8.3:+59101989 | None:intergenic |
| GTGTTTGTCCATGGTAAATG+CGG | 0.682262 | 8.3:+59102011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTTACAAATATG+TGG | - | chr8.3:59101297-59101316 | MS.gene016671:intron | 10.0% |
| !! | ATGAACAATAATAGTAAATA+AGG | + | chr8.3:59100508-59100527 | None:intergenic | 15.0% |
| !! | TGAACAATAATAGTAAATAA+GGG | + | chr8.3:59100507-59100526 | None:intergenic | 15.0% |
| !! | TTCATAAAAAAATGTCTTAT+TGG | - | chr8.3:59100716-59100735 | MS.gene016671:intron | 15.0% |
| !!! | AAGACGTTTTTTATTTTTAA+GGG | - | chr8.3:59101763-59101782 | MS.gene016671:intron | 15.0% |
| !!! | ATATTAAGTGACATAATTTT+AGG | - | chr8.3:59100405-59100424 | MS.gene016671:intron | 15.0% |
| !! | AACAATAATAGTAAATAAGG+GGG | + | chr8.3:59100505-59100524 | None:intergenic | 20.0% |
| !! | AACAATATTAAAAGACTGAT+AGG | + | chr8.3:59101789-59101808 | None:intergenic | 20.0% |
| !! | ACTATTATTGTTCATAATCA+AGG | - | chr8.3:59100513-59100532 | MS.gene016671:intron | 20.0% |
| !! | ATACTATCTTAATTGTATCT+TGG | - | chr8.3:59102235-59102254 | MS.gene016671:intron | 20.0% |
| !! | CATTGATATGATGAAAAAAA+TGG | - | chr8.3:59102067-59102086 | MS.gene016671:intron | 20.0% |
| !! | CTATTATTGTTCATAATCAA+GGG | - | chr8.3:59100514-59100533 | MS.gene016671:intron | 20.0% |
| !! | CTTAAAAATAAAAAACGTCT+TGG | + | chr8.3:59101764-59101783 | None:intergenic | 20.0% |
| !! | GAAAGTTATTAAAGTTAGAA+AGG | - | chr8.3:59102015-59102034 | MS.gene016671:CDS | 20.0% |
| !! | GAACAATAATAGTAAATAAG+GGG | + | chr8.3:59100506-59100525 | None:intergenic | 20.0% |
| !! | TAATGATAAAATAGTTCGTA+AGG | - | chr8.3:59101320-59101339 | MS.gene016671:intron | 20.0% |
| !! | TTCTTAATATAAAACTCTTG+AGG | + | chr8.3:59102199-59102218 | None:intergenic | 20.0% |
| !!! | ATATCAATGATAATGCTATA+AGG | + | chr8.3:59102056-59102075 | None:intergenic | 20.0% |
| !!! | CAAGACGTTTTTTATTTTTA+AGG | - | chr8.3:59101762-59101781 | MS.gene016671:intron | 20.0% |
| !!! | GATAATTTGTTTATTTCTTG+TGG | - | chr8.3:59101110-59101129 | MS.gene016671:intron | 20.0% |
| ! | AAGATTAAGTAGTTTGGAAA+AGG | - | chr8.3:59102171-59102190 | MS.gene016671:intron | 25.0% |
| ! | AAGCAATCAACACATAATAT+CGG | + | chr8.3:59101502-59101521 | None:intergenic | 25.0% |
| ! | ACAATTACTAAGTACTAACA+TGG | + | chr8.3:59101597-59101616 | None:intergenic | 25.0% |
| ! | ATAAACAAGAAAGTTTGAAG+AGG | + | chr8.3:59100301-59100320 | None:intergenic | 25.0% |
| ! | ATATTCATTTATTCCTTGGA+AGG | - | chr8.3:59101210-59101229 | MS.gene016671:intron | 25.0% |
| ! | GGTAAAAAGATTGAATCAAA+TGG | - | chr8.3:59102724-59102743 | MS.gene016671:CDS | 25.0% |
| ! | TATGATCAATTCTACACAAA+TGG | + | chr8.3:59102387-59102406 | None:intergenic | 25.0% |
| ! | TCCTAAAAGATTAAGTAGTT+TGG | - | chr8.3:59102165-59102184 | MS.gene016671:intron | 25.0% |
| !! | ACTTACCTTCTTTTTATTCA+TGG | - | chr8.3:59101083-59101102 | MS.gene016671:intron | 25.0% |
| !! | ATTTGTTTATTTCTTGTGGT+TGG | - | chr8.3:59101114-59101133 | MS.gene016671:intron | 25.0% |
| !! | CAATTCAAGTAACTTTTTGA+AGG | - | chr8.3:59100548-59100567 | MS.gene016671:intron | 25.0% |
| !! | CTTACCTTCTTTTTATTCAT+GGG | - | chr8.3:59101084-59101103 | MS.gene016671:intron | 25.0% |
| !! | TCCAAACTACTTAATCTTTT+AGG | + | chr8.3:59102169-59102188 | None:intergenic | 25.0% |
| !!! | ACTTAATCTTTTAGGAAAGT+TGG | + | chr8.3:59102161-59102180 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTAATCTATAGAC+TGG | - | chr8.3:59101059-59101078 | MS.gene016671:intron | 25.0% |
| AAAGATGAATCTTGTGCAAA+AGG | + | chr8.3:59101679-59101698 | None:intergenic | 30.0% | |
| AAATATAGAAACCATTCCCA+AGG | + | chr8.3:59102286-59102305 | None:intergenic | 30.0% | |
| AATATAGAAACCATTCCCAA+GGG | + | chr8.3:59102285-59102304 | None:intergenic | 30.0% | |
| ATTGTATCTTGGATCAATCT+AGG | - | chr8.3:59102246-59102265 | MS.gene016671:intron | 30.0% | |
| CAGCATATTCATTTATTCCT+TGG | - | chr8.3:59101206-59101225 | MS.gene016671:intron | 30.0% | |
| CCTTATTCAAATGCACAATT+CGG | - | chr8.3:59100943-59100962 | MS.gene016671:intron | 30.0% | |
| CTTTCCCATGAATAAAAAGA+AGG | + | chr8.3:59101091-59101110 | None:intergenic | 30.0% | |
| TCTAGATACCAAATTGCAAA+TGG | + | chr8.3:59100431-59100450 | None:intergenic | 30.0% | |
| TCTAGATTTGTCAAACCAAT+TGG | - | chr8.3:59100445-59100464 | MS.gene016671:intron | 30.0% | |
| TCTCTTATTCGATGAAGATT+AGG | - | chr8.3:59102325-59102344 | MS.gene016671:intron | 30.0% | |
| TTATCAGTTAGAGAAAGTGA+AGG | + | chr8.3:59100256-59100275 | None:intergenic | 30.0% | |
| TTGTATCTTGGATCAATCTA+GGG | - | chr8.3:59102247-59102266 | MS.gene016671:intron | 30.0% | |
| TTTCCATGAAAAAGTCCAAT+TGG | + | chr8.3:59100463-59100482 | None:intergenic | 30.0% | |
| ! | AAAAATGTCTTATTGGTCTC+AGG | - | chr8.3:59100723-59100742 | MS.gene016671:intron | 30.0% |
| ! | AGATTCATCTTTTCTCTGTA+TGG | - | chr8.3:59101687-59101706 | MS.gene016671:intron | 30.0% |
| ! | ATTTTAGGCCATTTGCAATT+TGG | - | chr8.3:59100420-59100439 | MS.gene016671:intron | 30.0% |
| ! | TTTTCCAAGATATGTACACA+TGG | - | chr8.3:59100882-59100901 | MS.gene016671:CDS | 30.0% |
| !! | CTTCTATTTCTGAAGTATCT+GGG | + | chr8.3:59101370-59101389 | None:intergenic | 30.0% |
| !! | TCTTCTATTTCTGAAGTATC+TGG | + | chr8.3:59101371-59101390 | None:intergenic | 30.0% |
| !! | TCTTTTAGGAAAGTTGGTTT+TGG | + | chr8.3:59102155-59102174 | None:intergenic | 30.0% |
| !!! | AAACCAATTGGACTTTTTCA+TGG | - | chr8.3:59100457-59100476 | MS.gene016671:intron | 30.0% |
| AAAACGTCTTGGACGAAAAA+AGG | + | chr8.3:59101753-59101772 | None:intergenic | 35.0% | |
| ATATTGTGTGCACCTATATC+TGG | - | chr8.3:59101149-59101168 | MS.gene016671:intron | 35.0% | |
| ATCTTGTGCAAAAGGTAATG+AGG | + | chr8.3:59101671-59101690 | None:intergenic | 35.0% | |
| ATTCTCCAATCATCAGTTTC+TGG | + | chr8.3:59100085-59100104 | None:intergenic | 35.0% | |
| CCGAATTGTGCATTTGAATA+AGG | + | chr8.3:59100946-59100965 | None:intergenic | 35.0% | |
| CTAGAAAAAGGCAACAATAC+TGG | - | chr8.3:59102544-59102563 | MS.gene016671:intron | 35.0% | |
| CTGTAAAGTCATTTCCATCA+TGG | + | chr8.3:59102657-59102676 | None:intergenic | 35.0% | |
| CTTTCTCTAACTGATAACTC+AGG | - | chr8.3:59100259-59100278 | MS.gene016671:CDS | 35.0% | |
| GAAAAAAGGAAGAGAAAGAG+AGG | + | chr8.3:59101739-59101758 | None:intergenic | 35.0% | |
| GAGAATAAAACATAGTGAGC+AGG | - | chr8.3:59100099-59100118 | MS.gene016671:CDS | 35.0% | |
| GGTCAAATCTTGAATGCTTA+TGG | - | chr8.3:59100964-59100983 | MS.gene016671:intron | 35.0% | |
| TAATATGCAATGTCCTTCCA+AGG | + | chr8.3:59101226-59101245 | None:intergenic | 35.0% | |
| TATTGTGTGCACCTATATCT+GGG | - | chr8.3:59101150-59101169 | MS.gene016671:intron | 35.0% | |
| TCTTGTGCAAAAGGTAATGA+GGG | + | chr8.3:59101670-59101689 | None:intergenic | 35.0% | |
| TGATGAGAGTAAATGGAAGA+TGG | + | chr8.3:59100133-59100152 | None:intergenic | 35.0% | |
| TTCAACATCAGTTACCATGA+TGG | - | chr8.3:59102640-59102659 | MS.gene016671:CDS | 35.0% | |
| TTCACCATGTGTACATATCT+TGG | + | chr8.3:59100889-59100908 | None:intergenic | 35.0% | |
| TTTAGCTGATCAGTTGAAGA+TGG | + | chr8.3:59100187-59100206 | None:intergenic | 35.0% | |
| ! | CTTTTGTCATATCTGGTTAC+AGG | - | chr8.3:59100909-59100928 | MS.gene016671:CDS | 35.0% |
| ! | TGGTGAACTTTTGTCATATC+TGG | - | chr8.3:59100902-59100921 | MS.gene016671:CDS | 35.0% |
| !! | AATAGAAGAGTATCAGTGTC+CGG | - | chr8.3:59101382-59101401 | MS.gene016671:intron | 35.0% |
| !! | AATGCTTTTGCCGCTTAAAA+TGG | - | chr8.3:59101907-59101926 | MS.gene016671:intron | 35.0% |
| !! | TCTAATGCTGCTCTAGAAAA+AGG | - | chr8.3:59102532-59102551 | MS.gene016671:intron | 35.0% |
| AACAATACTGGTGCAACATC+GGG | - | chr8.3:59102556-59102575 | MS.gene016671:CDS | 40.0% | |
| ACAGGGCATGTTTGATGTTT+CGG | + | chr8.3:59100770-59100789 | None:intergenic | 40.0% | |
| ACTTAATTAGCCCTTGGGAA+TGG | - | chr8.3:59102272-59102291 | MS.gene016671:intron | 40.0% | |
| AGGGTAACTTAATTAGCCCT+TGG | - | chr8.3:59102266-59102285 | MS.gene016671:intron | 40.0% | |
| CAACAATACTGGTGCAACAT+CGG | - | chr8.3:59102555-59102574 | MS.gene016671:CDS | 40.0% | |
| CTATGTCATTCACAGGCAAA+TGG | - | chr8.3:59102679-59102698 | MS.gene016671:CDS | 40.0% | |
| CTGATCAGTTGAAGATGGTT+TGG | + | chr8.3:59100182-59100201 | None:intergenic | 40.0% | |
| GAAAGTGAAGGAGAAACCAA+AGG | + | chr8.3:59100244-59100263 | None:intergenic | 40.0% | |
| GATGCATTTGGTATAGCTGA+GGG | + | chr8.3:59101880-59101899 | None:intergenic | 40.0% | |
| GCATAATGCCAATAGCTGTT+AGG | + | chr8.3:59101849-59101868 | None:intergenic | 40.0% | |
| GCATTCTAGCATGATGCATT+TGG | + | chr8.3:59101892-59101911 | None:intergenic | 40.0% | |
| GGAAACCAGAAACTGATGAT+TGG | - | chr8.3:59100077-59100096 | MS.gene016671:CDS | 40.0% | |
| GGCTAAGATGTGTAAGCAAA+AGG | + | chr8.3:59100345-59100364 | None:intergenic | 40.0% | |
| GGGTAACTTAATTAGCCCTT+GGG | - | chr8.3:59102267-59102286 | MS.gene016671:intron | 40.0% | |
| GGTACCAACAATGAGAATCA+AGG | - | chr8.3:59102577-59102596 | MS.gene016671:CDS | 40.0% | |
| GTATCTTTAGCTGTAAGCCT+CGG | - | chr8.3:59101633-59101652 | MS.gene016671:intron | 40.0% | |
| GTCAATGCAAAGCAGTATCA+TGG | - | chr8.3:59101947-59101966 | MS.gene016671:intron | 40.0% | |
| GTGTTTGTCCATGGTAAATG+CGG | + | chr8.3:59100799-59100818 | None:intergenic | 40.0% | |
| GTTCGAGCTTCTTTGTATTG+AGG | + | chr8.3:59102504-59102523 | None:intergenic | 40.0% | |
| TACAGATAACACAAGCATGC+TGG | + | chr8.3:59100366-59100385 | None:intergenic | 40.0% | |
| TACAGCACTATGTCATTCAC+AGG | - | chr8.3:59102672-59102691 | MS.gene016671:CDS | 40.0% | |
| TATCGCTATCGAATATGTGC+CGG | + | chr8.3:59101404-59101423 | None:intergenic | 40.0% | |
| TGACGGGATTCATGAAGATA+TGG | + | chr8.3:59102439-59102458 | None:intergenic | 40.0% | |
| TGAGCCTTGATTCTCATTGT+TGG | + | chr8.3:59102584-59102603 | None:intergenic | 40.0% | |
| TGATGCATTTGGTATAGCTG+AGG | + | chr8.3:59101881-59101900 | None:intergenic | 40.0% | |
| TGCTTATGGACAACAAGCTA+TGG | - | chr8.3:59100978-59100997 | MS.gene016671:intron | 40.0% | |
| TTCACAGGCAAATGGAAAAC+AGG | - | chr8.3:59102687-59102706 | MS.gene016671:CDS | 40.0% | |
| TTTACCATGGACAAACACCT+TGG | - | chr8.3:59100801-59100820 | MS.gene016671:CDS | 40.0% | |
| TTTACTCTCATCATCAGCCT+TGG | - | chr8.3:59100140-59100159 | MS.gene016671:CDS | 40.0% | |
| ! | AATGTCTTATTGGTCTCAGG+TGG | - | chr8.3:59100726-59100745 | MS.gene016671:intron | 40.0% |
| ! | AGGCTGATGATGAGAGTAAA+TGG | + | chr8.3:59100140-59100159 | None:intergenic | 40.0% |
| ! | ATGTCTTATTGGTCTCAGGT+GGG | - | chr8.3:59100727-59100746 | MS.gene016671:intron | 40.0% |
| ! | ATTTCTTGTGGTTGGTGTCT+AGG | - | chr8.3:59101122-59101141 | MS.gene016671:intron | 40.0% |
| ! | GGTTCCTCTTCCATTTTAAG+CGG | + | chr8.3:59101920-59101939 | None:intergenic | 40.0% |
| ! | TGCTTTGCATTGACATACAC+AGG | + | chr8.3:59101941-59101960 | None:intergenic | 40.0% |
| ! | TTCTCAAAGCATGTTGGTGA+CGG | + | chr8.3:59102456-59102475 | None:intergenic | 40.0% |
| ! | TTTGCCGCTTAAAATGGAAG+AGG | - | chr8.3:59101913-59101932 | MS.gene016671:intron | 40.0% |
| !! | TCACCAACATGCTTTGAGAA+GGG | - | chr8.3:59102456-59102475 | MS.gene016671:intron | 40.0% |
| AAACAGGAGGGTGACTTCTT+TGG | - | chr8.3:59102703-59102722 | MS.gene016671:CDS | 45.0% | |
| AATTCGCAGACGGAACTTGT+TGG | - | chr8.3:59100828-59100847 | MS.gene016671:CDS | 45.0% | |
| ACAAGTTCCGTCTGCGAATT+TGG | + | chr8.3:59100828-59100847 | None:intergenic | 45.0% | |
| ACAGGCAAATGGAAAACAGG+AGG | - | chr8.3:59102690-59102709 | MS.gene016671:CDS | 45.0% | |
| ACTCGAGTCCTAACAGCTAT+TGG | - | chr8.3:59101838-59101857 | MS.gene016671:CDS | 45.0% | |
| AGCCTATCATGCCCAGATAT+AGG | + | chr8.3:59101164-59101183 | None:intergenic | 45.0% | |
| CACCTATATCTGGGCATGAT+AGG | - | chr8.3:59101159-59101178 | MS.gene016671:intron | 45.0% | |
| CAGCACATGCACAAAATGCA+GGG | - | chr8.3:59102616-59102635 | MS.gene016671:CDS | 45.0% | |
| CAGGCAAATGGAAAACAGGA+GGG | - | chr8.3:59102691-59102710 | MS.gene016671:CDS | 45.0% | |
| TGTCACACATTCAGAGCCTT+TGG | - | chr8.3:59100225-59100244 | MS.gene016671:CDS | 45.0% | |
| TTGCCCTTCTCAAAGCATGT+TGG | + | chr8.3:59102462-59102481 | None:intergenic | 45.0% | |
| ! | TGTCTTATTGGTCTCAGGTG+GGG | - | chr8.3:59100728-59100747 | MS.gene016671:intron | 45.0% |
| !! | AACATGCTTTGAGAAGGGCA+AGG | - | chr8.3:59102461-59102480 | MS.gene016671:intron | 45.0% |
| !! | ACATGCTTTGAGAAGGGCAA+GGG | - | chr8.3:59102462-59102481 | MS.gene016671:intron | 45.0% |
| !! | GTCACCAACATGCTTTGAGA+AGG | - | chr8.3:59102455-59102474 | MS.gene016671:intron | 45.0% |
| !! | TCATCAGTTTCTGGTTTCCC+TGG | + | chr8.3:59100076-59100095 | None:intergenic | 45.0% |
| !! | TCTCAAAGCATGTTGGTGAC+GGG | + | chr8.3:59102455-59102474 | None:intergenic | 45.0% |
| !! | TTTGATGTTTCGGTGCTCCT+TGG | + | chr8.3:59100760-59100779 | None:intergenic | 45.0% |
| !!! | AAAGTAATTTAAATTTTTAT+CGG | + | chr8.3:59101465-59101484 | None:intergenic | 5.0% |
| ACGAAGACAATCGCGTGCAA+AGG | - | chr8.3:59101979-59101998 | MS.gene016671:CDS | 50.0% | |
| ACTCTCATCATCAGCCTTGG+TGG | - | chr8.3:59100143-59100162 | MS.gene016671:CDS | 50.0% | |
| CCTTGGTCCAAATTCGCAGA+CGG | - | chr8.3:59100818-59100837 | MS.gene016671:CDS | 50.0% | |
| GCAGCACATGCACAAAATGC+AGG | - | chr8.3:59102615-59102634 | MS.gene016671:CDS | 50.0% | |
| GGTAAATGCGGTTGAGGACA+GGG | + | chr8.3:59100787-59100806 | None:intergenic | 50.0% | |
| GTCCATGGTAAATGCGGTTG+AGG | + | chr8.3:59100793-59100812 | None:intergenic | 50.0% | |
| GTCCTCAACCGCATTTACCA+TGG | - | chr8.3:59100788-59100807 | MS.gene016671:intron | 50.0% | |
| TGGTAAATGCGGTTGAGGAC+AGG | + | chr8.3:59100788-59100807 | None:intergenic | 50.0% | |
| TTGAGAAGGGCAAGGGGAAA+TGG | - | chr8.3:59102469-59102488 | MS.gene016671:intron | 50.0% | |
| ! | CAGCCTTGGTGGCTTGAAAA+TGG | - | chr8.3:59100154-59100173 | MS.gene016671:CDS | 50.0% |
| ! | TGGACCAAGGTGTTTGTCCA+TGG | + | chr8.3:59100808-59100827 | None:intergenic | 50.0% |
| !! | CATGCTTTGAGAAGGGCAAG+GGG | - | chr8.3:59102463-59102482 | MS.gene016671:intron | 50.0% |
| !! | GAGCCATTTTCAAGCCACCA+AGG | + | chr8.3:59100160-59100179 | None:intergenic | 50.0% |
| AGAAGGGCAAGGGGAAATGG+CGG | - | chr8.3:59102472-59102491 | MS.gene016671:intron | 55.0% | |
| CCGTCTGCGAATTTGGACCA+AGG | + | chr8.3:59100821-59100840 | None:intergenic | 55.0% | |
| TGAGGGAAACAAGAGAGCCG+AGG | + | chr8.3:59101653-59101672 | None:intergenic | 55.0% | |
| CTCAGGTGGGGACGTTGCCA+AGG | - | chr8.3:59100740-59100759 | MS.gene016671:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 59100070 | 59102759 | 59100070 | ID=MS.gene016671 |
| chr8.3 | mRNA | 59100070 | 59102759 | 59100070 | ID=MS.gene016671.t1;Parent=MS.gene016671 |
| chr8.3 | exon | 59102549 | 59102759 | 59102549 | ID=MS.gene016671.t1.exon1;Parent=MS.gene016671.t1 |
| chr8.3 | CDS | 59102549 | 59102759 | 59102549 | ID=cds.MS.gene016671.t1;Parent=MS.gene016671.t1 |
| chr8.3 | exon | 59101969 | 59102084 | 59101969 | ID=MS.gene016671.t1.exon2;Parent=MS.gene016671.t1 |
| chr8.3 | CDS | 59101969 | 59102084 | 59101969 | ID=cds.MS.gene016671.t1;Parent=MS.gene016671.t1 |
| chr8.3 | exon | 59101830 | 59101898 | 59101830 | ID=MS.gene016671.t1.exon3;Parent=MS.gene016671.t1 |
| chr8.3 | CDS | 59101830 | 59101898 | 59101830 | ID=cds.MS.gene016671.t1;Parent=MS.gene016671.t1 |
| chr8.3 | exon | 59100793 | 59100957 | 59100793 | ID=MS.gene016671.t1.exon4;Parent=MS.gene016671.t1 |
| chr8.3 | CDS | 59100793 | 59100957 | 59100793 | ID=cds.MS.gene016671.t1;Parent=MS.gene016671.t1 |
| chr8.3 | exon | 59100070 | 59100393 | 59100070 | ID=MS.gene016671.t1.exon5;Parent=MS.gene016671.t1 |
| chr8.3 | CDS | 59100070 | 59100393 | 59100070 | ID=cds.MS.gene016671.t1;Parent=MS.gene016671.t1 |
| Gene Sequence |
| Protein sequence |
