Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016683.t1 | RHN78917.1 | 62.8 | 320 | 39 | 5 | 1 | 240 | 239 | 558 | 6.60E-95 | 357.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016683.t1 | Q10EL1 | 43.9 | 337 | 91 | 10 | 1 | 242 | 276 | 609 | 2.2e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016683.t1 | A0A072TPV6 | 62.8 | 320 | 39 | 5 | 1 | 240 | 239 | 558 | 4.8e-95 | 357.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016683.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016683.t1 | MTR_1g050438 | 62.813 | 320 | 39 | 5 | 1 | 240 | 223 | 542 | 1.22e-122 | 361 |
| MS.gene016683.t1 | MTR_0728s0020 | 62.813 | 320 | 39 | 5 | 1 | 240 | 239 | 558 | 5.63e-122 | 360 |
| MS.gene016683.t1 | MTR_3g029590 | 49.091 | 330 | 78 | 8 | 1 | 240 | 259 | 588 | 3.76e-86 | 270 |
| MS.gene016683.t1 | MTR_7g092070 | 48.494 | 332 | 76 | 12 | 1 | 240 | 259 | 587 | 3.12e-78 | 249 |
| MS.gene016683.t1 | MTR_3g435680 | 64.789 | 142 | 41 | 2 | 1 | 133 | 146 | 287 | 2.73e-60 | 195 |
| MS.gene016683.t1 | MTR_5g071070 | 45.148 | 237 | 103 | 6 | 1 | 212 | 143 | 377 | 1.15e-55 | 188 |
| MS.gene016683.t1 | MTR_5g071070 | 45.148 | 237 | 103 | 6 | 1 | 212 | 225 | 459 | 4.78e-55 | 187 |
| MS.gene016683.t1 | MTR_3g435590 | 59.712 | 139 | 54 | 1 | 1 | 137 | 233 | 371 | 8.09e-55 | 182 |
| MS.gene016683.t1 | MTR_5g082830 | 75.758 | 99 | 24 | 0 | 1 | 99 | 212 | 310 | 2.73e-53 | 182 |
| MS.gene016683.t1 | MTR_1g075890 | 74.747 | 99 | 25 | 0 | 1 | 99 | 224 | 322 | 4.18e-52 | 179 |
| MS.gene016683.t1 | MTR_3g070880 | 61.789 | 123 | 38 | 2 | 1 | 114 | 158 | 280 | 2.15e-48 | 167 |
| MS.gene016683.t1 | MTR_8g102100 | 56.410 | 117 | 51 | 0 | 2 | 118 | 77 | 193 | 4.99e-46 | 157 |
| MS.gene016683.t1 | MTR_6g090380 | 65.306 | 98 | 34 | 0 | 2 | 99 | 99 | 196 | 1.25e-45 | 156 |
| MS.gene016683.t1 | MTR_3g103960 | 50.000 | 136 | 62 | 2 | 1 | 135 | 48 | 178 | 2.40e-44 | 150 |
| MS.gene016683.t1 | MTR_2g090605 | 63.441 | 93 | 34 | 0 | 7 | 99 | 78 | 170 | 4.71e-42 | 148 |
| MS.gene016683.t1 | MTR_4g078660 | 56.122 | 98 | 43 | 0 | 2 | 99 | 56 | 153 | 1.16e-39 | 139 |
| MS.gene016683.t1 | MTR_3g464260 | 54.545 | 99 | 20 | 1 | 1 | 99 | 201 | 274 | 4.94e-31 | 120 |
| MS.gene016683.t1 | MTR_3g464270 | 40.397 | 151 | 75 | 3 | 5 | 140 | 8 | 158 | 9.06e-30 | 114 |
| MS.gene016683.t1 | MTR_3g464290 | 57.500 | 80 | 33 | 1 | 1 | 79 | 95 | 174 | 8.25e-28 | 110 |
| MS.gene016683.t1 | MTR_3g464280 | 43.434 | 99 | 22 | 1 | 1 | 99 | 183 | 247 | 2.91e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016683.t1 | AT5G12850 | 46.462 | 325 | 81 | 11 | 1 | 240 | 252 | 568 | 1.89e-76 | 244 |
| MS.gene016683.t1 | AT2G41900 | 47.516 | 322 | 76 | 10 | 1 | 240 | 256 | 566 | 7.74e-76 | 243 |
| MS.gene016683.t1 | AT5G58620 | 46.250 | 240 | 92 | 8 | 1 | 207 | 204 | 439 | 1.22e-55 | 187 |
| MS.gene016683.t1 | AT2G40140 | 57.143 | 140 | 54 | 1 | 1 | 134 | 209 | 348 | 2.04e-51 | 176 |
| MS.gene016683.t1 | AT2G40140 | 57.143 | 140 | 54 | 1 | 1 | 134 | 209 | 348 | 2.04e-51 | 176 |
| MS.gene016683.t1 | AT3G55980 | 72.727 | 99 | 27 | 0 | 1 | 99 | 206 | 304 | 1.01e-50 | 174 |
| MS.gene016683.t1 | AT3G55980 | 72.727 | 99 | 27 | 0 | 1 | 99 | 273 | 371 | 2.82e-50 | 174 |
| MS.gene016683.t1 | AT2G25900 | 64.286 | 98 | 35 | 0 | 2 | 99 | 86 | 183 | 6.13e-47 | 158 |
| MS.gene016683.t1 | AT2G25900 | 64.286 | 98 | 35 | 0 | 2 | 99 | 86 | 183 | 6.13e-47 | 158 |
| MS.gene016683.t1 | AT2G19810 | 63.265 | 98 | 36 | 0 | 2 | 99 | 74 | 171 | 1.22e-44 | 153 |
| MS.gene016683.t1 | AT4G29190 | 62.245 | 98 | 37 | 0 | 2 | 99 | 75 | 172 | 1.51e-44 | 153 |
| MS.gene016683.t1 | AT1G03790 | 65.657 | 99 | 33 | 1 | 2 | 99 | 78 | 176 | 1.88e-43 | 151 |
| MS.gene016683.t1 | AT5G07500 | 60.606 | 99 | 39 | 0 | 1 | 99 | 47 | 145 | 3.39e-41 | 141 |
| MS.gene016683.t1 | AT5G44260 | 61.616 | 99 | 37 | 1 | 2 | 99 | 56 | 154 | 5.52e-40 | 142 |
Find 51 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGTGCCTTGCCCTGAATTT+AGG | 0.210124 | 8.1:+66279028 | MS.gene016683:CDS |
| AAATGTTGAGCATCTGTTAC+AGG | 0.268392 | 8.1:+66279726 | MS.gene016683:CDS |
| GAGATTGGTTCAAAACTTCT+AGG | 0.293302 | 8.1:-66279784 | None:intergenic |
| TGGGACTAGTTGTGATAAAA+AGG | 0.300849 | 8.1:+66279149 | MS.gene016683:CDS |
| CAAGCCTCTTTCCTAAATTC+AGG | 0.309020 | 8.1:-66279039 | None:intergenic |
| TGCTGCTGCAATGAATCTTT+TGG | 0.323237 | 8.1:+66279254 | MS.gene016683:CDS |
| CTCCTCCGAGCATTCTCTCC+TGG | 0.324682 | 8.1:-66278979 | None:intergenic |
| TTCTCTCCTGGGTGCACATA+TGG | 0.332799 | 8.1:-66278967 | None:intergenic |
| AATTTAGGAAAGAGGCTTGT+AGG | 0.339756 | 8.1:+66279043 | MS.gene016683:CDS |
| TGGTCACATCAAAATGTTCT+AGG | 0.356892 | 8.1:+66279376 | MS.gene016683:CDS |
| TCCTCCGAGCATTCTCTCCT+GGG | 0.362088 | 8.1:-66278978 | None:intergenic |
| CATCTGTTACAGGCTTCATT+TGG | 0.390176 | 8.1:+66279736 | MS.gene016683:CDS |
| CTCGGAGGAGGGACCTTAGA+AGG | 0.390750 | 8.1:+66278992 | MS.gene016683:CDS |
| AGGGCTCAGTGGAGAGAGAT+TGG | 0.407226 | 8.1:-66279799 | None:intergenic |
| CTACGTTCGTTAACTAGATC+TGG | 0.429336 | 8.1:+66279183 | MS.gene016683:CDS |
| TCATTTGGCGTCCCTTCATT+CGG | 0.450416 | 8.1:+66279751 | MS.gene016683:CDS |
| TGTATGCAAGTGATGAATTT+CGG | 0.450722 | 8.1:+66278884 | MS.gene016683:CDS |
| AGCTGTAAGAGAACCTTCTA+AGG | 0.451042 | 8.1:-66279005 | None:intergenic |
| AATGTGCTGAGCCATTTAGA+TGG | 0.452397 | 8.1:+66279466 | MS.gene016683:CDS |
| CGAACACGACTCTGTAAAGA+TGG | 0.469623 | 8.1:+66279129 | MS.gene016683:CDS |
| CCCGTGCACAATCTCATGAT+TGG | 0.480744 | 8.1:+66278935 | MS.gene016683:CDS |
| AAGCCTCTTTCCTAAATTCA+GGG | 0.483169 | 8.1:-66279038 | None:intergenic |
| TTGCCCTGAATTTAGGAAAG+AGG | 0.495870 | 8.1:+66279035 | MS.gene016683:CDS |
| TCTCATTCTCAAGTGCTGCT+TGG | 0.496358 | 8.1:+66279356 | MS.gene016683:intron |
| GAGGGCATATTAGTATTTGA+AGG | 0.496572 | 8.1:-66279697 | None:intergenic |
| AGGAAAGAGGCTTGTAGGCA+TGG | 0.515731 | 8.1:+66279048 | MS.gene016683:CDS |
| CTCATGGAATATTCGAGTGT+TGG | 0.522534 | 8.1:+66279088 | MS.gene016683:CDS |
| ATTGTGCACGGGAACAATGA+AGG | 0.527678 | 8.1:-66278924 | None:intergenic |
| GGTGATGTGCTACCGAATGA+AGG | 0.529639 | 8.1:-66279763 | None:intergenic |
| CAGGAGAGAATGCTCGGAGG+AGG | 0.532536 | 8.1:+66278980 | MS.gene016683:CDS |
| CAGGCAGAATGTCGTGAGGA+TGG | 0.541793 | 8.1:-66279435 | None:intergenic |
| ATAGCAGCTGATTTATGTGA+AGG | 0.546498 | 8.1:-66279649 | None:intergenic |
| TGCACCCAGGAGAGAATGCT+CGG | 0.556534 | 8.1:+66278974 | MS.gene016683:CDS |
| TCCAATCATGAGATTGTGCA+CGG | 0.561774 | 8.1:-66278936 | None:intergenic |
| ATGTGCTGAGCCATTTAGAT+GGG | 0.563955 | 8.1:+66279467 | MS.gene016683:CDS |
| AGGAGAGAATGCTCGGAGGA+GGG | 0.569188 | 8.1:+66278981 | MS.gene016683:CDS |
| TCTTTCCTAAATTCAGGGCA+AGG | 0.573700 | 8.1:-66279033 | None:intergenic |
| TAGCAGCTGATTTATGTGAA+GGG | 0.575464 | 8.1:-66279648 | None:intergenic |
| TTGTGCACGGGAACAATGAA+GGG | 0.582751 | 8.1:-66278923 | None:intergenic |
| GATAAGTGTGAATATGCTCA+TGG | 0.587938 | 8.1:+66279072 | MS.gene016683:CDS |
| GTGATGTGCTACCGAATGAA+GGG | 0.591018 | 8.1:-66279762 | None:intergenic |
| AGCAGCTGATTTATGTGAAG+GGG | 0.592283 | 8.1:-66279647 | None:intergenic |
| CAGGTATTCTGACCCAGCAA+TGG | 0.597476 | 8.1:+66279612 | MS.gene016683:intron |
| GAGGCAGATGAACGTAGTGA+AGG | 0.609734 | 8.1:-66279210 | None:intergenic |
| GTCCATCGCATTAAAAGCAG+AGG | 0.612380 | 8.1:-66279229 | None:intergenic |
| GAACACGACTCTGTAAAGAT+GGG | 0.635654 | 8.1:+66279130 | MS.gene016683:CDS |
| AGTCGTGTTCGATACTGATG+TGG | 0.638739 | 8.1:-66279117 | None:intergenic |
| CCAATCATGAGATTGTGCAC+GGG | 0.643224 | 8.1:-66278935 | None:intergenic |
| GTCGTGTTCGATACTGATGT+GGG | 0.690047 | 8.1:-66279116 | None:intergenic |
| GAGTGTCCATATGTGCACCC+AGG | 0.695919 | 8.1:+66278961 | MS.gene016683:CDS |
| ACCCAGGAGAGAATGCTCGG+AGG | 0.756453 | 8.1:+66278977 | MS.gene016683:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTGGGAAAAATTAAATTAGA+TGG | - | chr8.1:66279312-66279331 | None:intergenic | 25.0% |
| ACTAAATCCATCAAATCTTG+AGG | + | chr8.1:66279558-66279577 | MS.gene016683:intron | 30.0% | |
| TGTATGCAAGTGATGAATTT+CGG | + | chr8.1:66278884-66278903 | MS.gene016683:CDS | 30.0% | |
| ! | AATTTTCAATCTAGTCGGTT+GGG | + | chr8.1:66279403-66279422 | MS.gene016683:CDS | 30.0% |
| ! | ATTTCGGATGTTTTCTTTCA+AGG | + | chr8.1:66278900-66278919 | MS.gene016683:CDS | 30.0% |
| ! | GAAGCAATTTTCAATCTAGT+CGG | + | chr8.1:66279398-66279417 | MS.gene016683:CDS | 30.0% |
| !!! | AACAGATGCTCAACATTTTT+TGG | - | chr8.1:66279724-66279743 | None:intergenic | 30.0% |
| AAAAAACAGAAGCCATTGCT+GGG | - | chr8.1:66279627-66279646 | None:intergenic | 35.0% | |
| AAATGTTGAGCATCTGTTAC+AGG | + | chr8.1:66279726-66279745 | MS.gene016683:CDS | 35.0% | |
| AACAGCTCAAGTCATTCATA+AGG | - | chr8.1:66279501-66279520 | None:intergenic | 35.0% | |
| AAGAGATCCTCAAGATTTGA+TGG | - | chr8.1:66279568-66279587 | None:intergenic | 35.0% | |
| AAGCCTCTTTCCTAAATTCA+GGG | - | chr8.1:66279041-66279060 | None:intergenic | 35.0% | |
| AATTTAGGAAAGAGGCTTGT+AGG | + | chr8.1:66279043-66279062 | MS.gene016683:CDS | 35.0% | |
| GATAAGTGTGAATATGCTCA+TGG | + | chr8.1:66279072-66279091 | MS.gene016683:CDS | 35.0% | |
| TGGTCACATCAAAATGTTCT+AGG | + | chr8.1:66279376-66279395 | MS.gene016683:CDS | 35.0% | |
| ! | ATAGCAGCTGATTTATGTGA+AGG | - | chr8.1:66279652-66279671 | None:intergenic | 35.0% |
| ! | CAATTTTCAATCTAGTCGGT+TGG | + | chr8.1:66279402-66279421 | MS.gene016683:CDS | 35.0% |
| ! | GAGATTGGTTCAAAACTTCT+AGG | - | chr8.1:66279787-66279806 | None:intergenic | 35.0% |
| ! | GAGGGCATATTAGTATTTGA+AGG | - | chr8.1:66279700-66279719 | None:intergenic | 35.0% |
| ! | GGTTTTTCTACCCATCTAAA+TGG | - | chr8.1:66279480-66279499 | None:intergenic | 35.0% |
| ! | TAGCAGCTGATTTATGTGAA+GGG | - | chr8.1:66279651-66279670 | None:intergenic | 35.0% |
| !! | TGGGACTAGTTGTGATAAAA+AGG | + | chr8.1:66279149-66279168 | MS.gene016683:CDS | 35.0% |
| !!! | ATGCTCAACATTTTTTGGAG+AGG | - | chr8.1:66279719-66279738 | None:intergenic | 35.0% |
| !!! | TGCTCAACATTTTTTGGAGA+GGG | - | chr8.1:66279718-66279737 | None:intergenic | 35.0% |
| AATGTGCTGAGCCATTTAGA+TGG | + | chr8.1:66279466-66279485 | MS.gene016683:CDS | 40.0% | |
| AGCTGTAAGAGAACCTTCTA+AGG | - | chr8.1:66279008-66279027 | None:intergenic | 40.0% | |
| ATGAACGAAAGAGACTAACG+AGG | - | chr8.1:66279289-66279308 | None:intergenic | 40.0% | |
| ATGTGCTGAGCCATTTAGAT+GGG | + | chr8.1:66279467-66279486 | MS.gene016683:CDS | 40.0% | |
| CAAGCCTCTTTCCTAAATTC+AGG | - | chr8.1:66279042-66279061 | None:intergenic | 40.0% | |
| CATCTGTTACAGGCTTCATT+TGG | + | chr8.1:66279736-66279755 | MS.gene016683:CDS | 40.0% | |
| CTACGTTCGTTAACTAGATC+TGG | + | chr8.1:66279183-66279202 | MS.gene016683:CDS | 40.0% | |
| CTCATGGAATATTCGAGTGT+TGG | + | chr8.1:66279088-66279107 | MS.gene016683:CDS | 40.0% | |
| GAAAAAACAGAAGCCATTGC+TGG | - | chr8.1:66279628-66279647 | None:intergenic | 40.0% | |
| GAACACGACTCTGTAAAGAT+GGG | + | chr8.1:66279130-66279149 | MS.gene016683:CDS | 40.0% | |
| TCCAATCATGAGATTGTGCA+CGG | - | chr8.1:66278939-66278958 | None:intergenic | 40.0% | |
| TCTTTCCTAAATTCAGGGCA+AGG | - | chr8.1:66279036-66279055 | None:intergenic | 40.0% | |
| TGAACGAAAGAGACTAACGA+GGG | - | chr8.1:66279288-66279307 | None:intergenic | 40.0% | |
| TTGCCCTGAATTTAGGAAAG+AGG | + | chr8.1:66279035-66279054 | MS.gene016683:CDS | 40.0% | |
| ! | AATGAGATGCCATTTCCAGA+AGG | - | chr8.1:66279343-66279362 | None:intergenic | 40.0% |
| ! | AGCAGCTGATTTATGTGAAG+GGG | - | chr8.1:66279650-66279669 | None:intergenic | 40.0% |
| ! | ATGAGATGCCATTTCCAGAA+GGG | - | chr8.1:66279342-66279361 | None:intergenic | 40.0% |
| ! | CTCAGCACATTGAAGTTTTC+AGG | - | chr8.1:66279457-66279476 | None:intergenic | 40.0% |
| ! | GCTGCAATGAATCTTTTGGT+CGG | + | chr8.1:66279258-66279277 | MS.gene016683:CDS | 40.0% |
| ! | TCTTGAGGATCTCTTTTGTG+CGG | + | chr8.1:66279573-66279592 | MS.gene016683:intron | 40.0% |
| ! | TGCTGCTGCAATGAATCTTT+TGG | + | chr8.1:66279254-66279273 | MS.gene016683:CDS | 40.0% |
| AGTCGTGTTCGATACTGATG+TGG | - | chr8.1:66279120-66279139 | None:intergenic | 45.0% | |
| ATTGCTGGGTCAGAATACCT+GGG | - | chr8.1:66279613-66279632 | None:intergenic | 45.0% | |
| ATTGTGCACGGGAACAATGA+AGG | - | chr8.1:66278927-66278946 | None:intergenic | 45.0% | |
| CCAATCATGAGATTGTGCAC+GGG | - | chr8.1:66278938-66278957 | None:intergenic | 45.0% | |
| CGAACACGACTCTGTAAAGA+TGG | + | chr8.1:66279129-66279148 | MS.gene016683:CDS | 45.0% | |
| GTCCATCGCATTAAAAGCAG+AGG | - | chr8.1:66279232-66279251 | None:intergenic | 45.0% | |
| GTCGTGTTCGATACTGATGT+GGG | - | chr8.1:66279119-66279138 | None:intergenic | 45.0% | |
| GTGATGTGCTACCGAATGAA+GGG | - | chr8.1:66279765-66279784 | None:intergenic | 45.0% | |
| TCATTTGGCGTCCCTTCATT+CGG | + | chr8.1:66279751-66279770 | MS.gene016683:CDS | 45.0% | |
| TTGTGCACGGGAACAATGAA+GGG | - | chr8.1:66278926-66278945 | None:intergenic | 45.0% | |
| ! | CGGAAATTTTGTCATCTCCC+AGG | + | chr8.1:66279593-66279612 | MS.gene016683:intron | 45.0% |
| ! | TCTCATTCTCAAGTGCTGCT+TGG | + | chr8.1:66279356-66279375 | MS.gene016683:intron | 45.0% |
| ! | TGAGATGCCATTTCCAGAAG+GGG | - | chr8.1:66279341-66279360 | None:intergenic | 45.0% |
| !! | AACCCAGTCCTAGTTCTAGT+CGG | + | chr8.1:66279527-66279546 | MS.gene016683:intron | 45.0% |
| !! | TCCTAGTTCTAGTCGGTCTA+AGG | + | chr8.1:66279534-66279553 | MS.gene016683:intron | 45.0% |
| !! | TGCCTCTGCTTTTAATGCGA+TGG | + | chr8.1:66279227-66279246 | MS.gene016683:CDS | 45.0% |
| !! | TTTTCAGGCAGAATGTCGTG+AGG | - | chr8.1:66279442-66279461 | None:intergenic | 45.0% |
| AGACCGACTAGAACTAGGAC+TGG | - | chr8.1:66279533-66279552 | None:intergenic | 50.0% | |
| AGGAAAGAGGCTTGTAGGCA+TGG | + | chr8.1:66279048-66279067 | MS.gene016683:CDS | 50.0% | |
| CAGGTATTCTGACCCAGCAA+TGG | + | chr8.1:66279612-66279631 | MS.gene016683:intron | 50.0% | |
| CATTGCTGGGTCAGAATACC+TGG | - | chr8.1:66279614-66279633 | None:intergenic | 50.0% | |
| CCCGTGCACAATCTCATGAT+TGG | + | chr8.1:66278935-66278954 | MS.gene016683:CDS | 50.0% | |
| GACCGACTAGAACTAGGACT+GGG | - | chr8.1:66279532-66279551 | None:intergenic | 50.0% | |
| GAGGCAGATGAACGTAGTGA+AGG | - | chr8.1:66279213-66279232 | None:intergenic | 50.0% | |
| GCCTTAGACCGACTAGAACT+AGG | - | chr8.1:66279538-66279557 | None:intergenic | 50.0% | |
| GGTGATGTGCTACCGAATGA+AGG | - | chr8.1:66279766-66279785 | None:intergenic | 50.0% | |
| TTCTCTCCTGGGTGCACATA+TGG | - | chr8.1:66278970-66278989 | None:intergenic | 50.0% | |
| AGGAGAGAATGCTCGGAGGA+GGG | + | chr8.1:66278981-66279000 | MS.gene016683:CDS | 55.0% | |
| CAGGCAGAATGTCGTGAGGA+TGG | - | chr8.1:66279438-66279457 | None:intergenic | 55.0% | |
| GAGTGTCCATATGTGCACCC+AGG | + | chr8.1:66278961-66278980 | MS.gene016683:CDS | 55.0% | |
| GCGTGCCTTGCCCTGAATTT+AGG | + | chr8.1:66279028-66279047 | MS.gene016683:CDS | 55.0% | |
| TCCTCCGAGCATTCTCTCCT+GGG | - | chr8.1:66278981-66279000 | None:intergenic | 55.0% | |
| TGCACCCAGGAGAGAATGCT+CGG | + | chr8.1:66278974-66278993 | MS.gene016683:CDS | 55.0% | |
| ! | GCCATTTCCAGAAGGGGCAT+AGG | - | chr8.1:66279335-66279354 | None:intergenic | 55.0% |
| ! | GCCTATGCCCCTTCTGGAAA+TGG | + | chr8.1:66279331-66279350 | MS.gene016683:intron | 55.0% |
| ! | TTCCAGAAGGGGCATAGGCT+GGG | - | chr8.1:66279330-66279349 | None:intergenic | 55.0% |
| ! | TTTCCAGAAGGGGCATAGGC+TGG | - | chr8.1:66279331-66279350 | None:intergenic | 55.0% |
| ACCCAGGAGAGAATGCTCGG+AGG | + | chr8.1:66278977-66278996 | MS.gene016683:CDS | 60.0% | |
| CAGGAGAGAATGCTCGGAGG+AGG | + | chr8.1:66278980-66278999 | MS.gene016683:CDS | 60.0% | |
| CTCCTCCGAGCATTCTCTCC+TGG | - | chr8.1:66278982-66279001 | None:intergenic | 60.0% | |
| CTCGGAGGAGGGACCTTAGA+AGG | + | chr8.1:66278992-66279011 | MS.gene016683:CDS | 60.0% | |
| TTCCCAGCCTATGCCCCTTC+TGG | + | chr8.1:66279325-66279344 | MS.gene016683:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 66278883 | 66279816 | 66278883 | ID=MS.gene016683 |
| chr8.1 | mRNA | 66278883 | 66279816 | 66278883 | ID=MS.gene016683.t1;Parent=MS.gene016683 |
| chr8.1 | exon | 66278883 | 66279289 | 66278883 | ID=MS.gene016683.t1.exon1;Parent=MS.gene016683.t1 |
| chr8.1 | CDS | 66278883 | 66279289 | 66278883 | ID=cds.MS.gene016683.t1;Parent=MS.gene016683.t1 |
| chr8.1 | exon | 66279369 | 66279488 | 66279369 | ID=MS.gene016683.t1.exon2;Parent=MS.gene016683.t1 |
| chr8.1 | CDS | 66279369 | 66279488 | 66279369 | ID=cds.MS.gene016683.t1;Parent=MS.gene016683.t1 |
| chr8.1 | exon | 66279615 | 66279816 | 66279615 | ID=MS.gene016683.t1.exon3;Parent=MS.gene016683.t1 |
| chr8.1 | CDS | 66279615 | 66279816 | 66279615 | ID=cds.MS.gene016683.t1;Parent=MS.gene016683.t1 |
| Gene Sequence |
| Protein sequence |
