Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016691.t1 | XP_024628367.1 | 98.6 | 210 | 2 | 1 | 1 | 210 | 132 | 340 | 2.00E-124 | 454.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016691.t1 | Q9SVY1 | 87.9 | 174 | 21 | 0 | 30 | 203 | 198 | 371 | 7.3e-99 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016691.t1 | A0A396GKT8 | 98.6 | 210 | 2 | 1 | 1 | 210 | 132 | 340 | 1.5e-124 | 454.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016691.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016691.t1 | MTR_1g093095 | 74.233 | 163 | 39 | 1 | 33 | 192 | 99 | 261 | 7.95e-94 | 276 |
| MS.gene016691.t1 | MTR_1g016010 | 36.620 | 142 | 79 | 5 | 41 | 180 | 62 | 194 | 1.23e-20 | 89.4 |
| MS.gene016691.t1 | MTR_1g112270 | 36.301 | 146 | 83 | 5 | 36 | 180 | 60 | 196 | 6.10e-20 | 87.8 |
| MS.gene016691.t1 | MTR_1g112270 | 36.301 | 146 | 83 | 5 | 36 | 180 | 71 | 207 | 6.65e-20 | 87.4 |
| MS.gene016691.t1 | MTR_1g094115 | 38.686 | 137 | 72 | 6 | 46 | 180 | 56 | 182 | 1.10e-19 | 87.0 |
| MS.gene016691.t1 | MTR_1g094115 | 36.735 | 147 | 81 | 6 | 36 | 180 | 63 | 199 | 1.10e-19 | 87.0 |
| MS.gene016691.t1 | MTR_4g059870 | 37.143 | 140 | 77 | 5 | 43 | 180 | 61 | 191 | 1.14e-19 | 86.7 |
| MS.gene016691.t1 | MTR_2g093960 | 36.054 | 147 | 83 | 5 | 36 | 180 | 48 | 185 | 1.55e-19 | 85.9 |
| MS.gene016691.t1 | MTR_8g017210 | 35.252 | 139 | 80 | 4 | 43 | 180 | 85 | 214 | 2.12e-19 | 85.9 |
| MS.gene016691.t1 | MTR_2g099990 | 34.247 | 146 | 86 | 4 | 36 | 180 | 62 | 198 | 5.46e-19 | 84.7 |
| MS.gene016691.t1 | MTR_2g090745 | 34.932 | 146 | 85 | 5 | 36 | 180 | 23 | 159 | 6.57e-19 | 84.3 |
| MS.gene016691.t1 | MTR_2g099990 | 34.783 | 138 | 80 | 4 | 44 | 180 | 1 | 129 | 2.67e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016691.t1 | AT3G57670 | 87.931 | 174 | 21 | 0 | 30 | 203 | 198 | 371 | 4.45e-119 | 343 |
| MS.gene016691.t1 | AT3G20880 | 74.742 | 194 | 43 | 3 | 14 | 203 | 218 | 409 | 2.77e-107 | 314 |
| MS.gene016691.t1 | AT1G51220 | 80.460 | 174 | 30 | 2 | 34 | 203 | 163 | 336 | 7.38e-105 | 305 |
| MS.gene016691.t1 | AT1G13290 | 77.019 | 161 | 35 | 2 | 31 | 189 | 83 | 243 | 7.20e-95 | 279 |
| MS.gene016691.t1 | AT1G08290 | 72.781 | 169 | 42 | 2 | 33 | 197 | 164 | 332 | 1.02e-93 | 277 |
| MS.gene016691.t1 | AT1G34790 | 74.706 | 170 | 43 | 0 | 34 | 203 | 130 | 299 | 1.51e-93 | 276 |
| MS.gene016691.t1 | AT1G34370 | 34.574 | 188 | 105 | 5 | 9 | 180 | 197 | 382 | 1.72e-27 | 108 |
| MS.gene016691.t1 | AT1G34370 | 34.574 | 188 | 105 | 5 | 9 | 180 | 197 | 382 | 1.72e-27 | 108 |
| MS.gene016691.t1 | AT1G34370 | 39.456 | 147 | 78 | 4 | 43 | 180 | 28 | 172 | 1.06e-26 | 103 |
| MS.gene016691.t1 | AT5G22890 | 38.621 | 145 | 82 | 3 | 43 | 180 | 211 | 355 | 1.41e-23 | 97.1 |
| MS.gene016691.t1 | AT1G55110 | 38.028 | 142 | 77 | 6 | 41 | 180 | 84 | 216 | 7.52e-21 | 90.1 |
| MS.gene016691.t1 | AT1G55110 | 38.028 | 142 | 77 | 6 | 41 | 180 | 84 | 216 | 7.52e-21 | 90.1 |
| MS.gene016691.t1 | AT1G55110 | 38.028 | 142 | 77 | 6 | 41 | 180 | 84 | 216 | 7.52e-21 | 90.1 |
| MS.gene016691.t1 | AT1G14580 | 32.609 | 184 | 101 | 6 | 11 | 180 | 45 | 219 | 2.30e-20 | 88.6 |
| MS.gene016691.t1 | AT1G14580 | 32.609 | 184 | 101 | 6 | 11 | 180 | 31 | 205 | 2.61e-20 | 88.6 |
| MS.gene016691.t1 | AT1G14580 | 32.609 | 184 | 101 | 6 | 11 | 180 | 31 | 205 | 2.61e-20 | 88.6 |
| MS.gene016691.t1 | AT2G02070 | 36.301 | 146 | 83 | 4 | 36 | 180 | 68 | 204 | 2.98e-20 | 88.6 |
| MS.gene016691.t1 | AT2G02070 | 36.301 | 146 | 83 | 4 | 36 | 180 | 68 | 204 | 2.98e-20 | 88.6 |
| MS.gene016691.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 41 | 180 | 75 | 206 | 3.42e-20 | 88.2 |
| MS.gene016691.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 41 | 180 | 75 | 206 | 3.42e-20 | 88.2 |
| MS.gene016691.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 41 | 180 | 75 | 206 | 3.42e-20 | 88.2 |
| MS.gene016691.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 41 | 180 | 75 | 206 | 3.42e-20 | 88.2 |
| MS.gene016691.t1 | AT5G03150 | 33.333 | 165 | 93 | 5 | 42 | 205 | 75 | 223 | 7.74e-20 | 87.4 |
| MS.gene016691.t1 | AT2G02080 | 36.957 | 138 | 77 | 4 | 44 | 180 | 1 | 129 | 1.31e-19 | 86.3 |
| MS.gene016691.t1 | AT2G02080 | 36.957 | 138 | 77 | 4 | 44 | 180 | 1 | 129 | 1.31e-19 | 86.3 |
| MS.gene016691.t1 | AT5G66730 | 35.915 | 142 | 79 | 5 | 41 | 180 | 53 | 184 | 1.15e-18 | 84.0 |
| MS.gene016691.t1 | AT5G44160 | 33.133 | 166 | 93 | 5 | 43 | 207 | 21 | 169 | 1.58e-18 | 83.2 |
| MS.gene016691.t1 | AT5G44160 | 32.934 | 167 | 94 | 5 | 42 | 207 | 59 | 208 | 1.80e-18 | 83.2 |
| MS.gene016691.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 43 | 180 | 62 | 192 | 3.92e-18 | 82.4 |
| MS.gene016691.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 43 | 180 | 62 | 192 | 3.92e-18 | 82.4 |
| MS.gene016691.t1 | AT1G03840 | 34.247 | 146 | 86 | 5 | 36 | 180 | 57 | 193 | 4.96e-18 | 82.0 |
| MS.gene016691.t1 | AT1G03840 | 34.247 | 146 | 86 | 5 | 36 | 180 | 55 | 191 | 4.99e-18 | 82.0 |
| MS.gene016691.t1 | AT5G60470 | 35.294 | 136 | 78 | 4 | 43 | 176 | 58 | 185 | 6.07e-18 | 81.6 |
| MS.gene016691.t1 | AT5G60470 | 35.294 | 136 | 78 | 4 | 43 | 176 | 67 | 194 | 6.64e-18 | 81.6 |
| MS.gene016691.t1 | AT5G60470 | 35.294 | 136 | 78 | 4 | 43 | 176 | 63 | 190 | 6.83e-18 | 81.6 |
| MS.gene016691.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 36 | 180 | 87 | 224 | 2.01e-17 | 80.5 |
| MS.gene016691.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 36 | 180 | 81 | 218 | 2.01e-17 | 80.5 |
| MS.gene016691.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 36 | 180 | 86 | 223 | 2.05e-17 | 80.5 |
| MS.gene016691.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 36 | 180 | 86 | 223 | 2.05e-17 | 80.5 |
| MS.gene016691.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 36 | 180 | 73 | 210 | 2.20e-17 | 80.1 |
| MS.gene016691.t1 | AT4G02670 | 33.562 | 146 | 88 | 5 | 36 | 180 | 71 | 208 | 2.21e-17 | 80.1 |
| MS.gene016691.t1 | AT4G02670 | 33.562 | 146 | 88 | 5 | 36 | 180 | 69 | 206 | 2.46e-17 | 79.7 |
| MS.gene016691.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 36 | 180 | 67 | 204 | 2.61e-17 | 80.1 |
| MS.gene016691.t1 | AT3G50700 | 33.544 | 158 | 85 | 6 | 41 | 196 | 55 | 194 | 3.85e-17 | 79.3 |
| MS.gene016691.t1 | AT1G25250 | 28.758 | 153 | 99 | 5 | 27 | 176 | 17 | 162 | 6.62e-14 | 69.7 |
| MS.gene016691.t1 | AT1G25250 | 30.935 | 139 | 86 | 5 | 41 | 176 | 54 | 185 | 1.18e-13 | 69.3 |
| MS.gene016691.t1 | AT1G68130 | 31.655 | 139 | 84 | 5 | 41 | 176 | 62 | 192 | 6.38e-13 | 67.0 |
| MS.gene016691.t1 | AT2G01940 | 30.935 | 139 | 85 | 5 | 41 | 176 | 65 | 195 | 1.46e-11 | 63.2 |
Find 41 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTATGGTCATGGTGCTTT+TGG | 0.295781 | 8.1:+66623254 | MS.gene016691:CDS |
| CATATTAAAGCCTTTGGTTA+TGG | 0.310320 | 8.1:+66623239 | MS.gene016691:CDS |
| AGAAGAATTGTGGCAAAATA+TGG | 0.329283 | 8.1:+66623168 | MS.gene016691:CDS |
| AAGGGGCCAGATTCTCTAAA+AGG | 0.343680 | 8.1:+66622942 | MS.gene016691:CDS |
| AAAGACCATATTAAAGCCTT+TGG | 0.344662 | 8.1:+66623233 | MS.gene016691:CDS |
| TTCTGAACATCAACAACCTT+TGG | 0.351430 | 8.1:+66620984 | MS.gene016691:CDS |
| CATAACCAAAGGCTTTAATA+TGG | 0.384327 | 8.1:-66623238 | None:intergenic |
| CTCATCAAATTGCATAGAAA+TGG | 0.392609 | 8.1:+66620936 | MS.gene016691:CDS |
| CAACAGATACAACAATCTTC+AGG | 0.407884 | 8.1:+66621104 | MS.gene016691:CDS |
| CATTTGCAGTGAAAGGTGAT+TGG | 0.425078 | 8.1:+66623135 | MS.gene016691:CDS |
| ACACCTTCTCAAATTCTCAT+TGG | 0.440374 | 8.1:+66621042 | MS.gene016691:CDS |
| CCATGCTATTGTTGTGCACC+AGG | 0.454587 | 8.1:+66622993 | MS.gene016691:CDS |
| TGAACAACAAGGGTCAGTAT+TGG | 0.475729 | 8.1:+66621013 | MS.gene016691:CDS |
| AAAGCCTTTGGTTATGGTCA+TGG | 0.479825 | 8.1:+66623245 | MS.gene016691:CDS |
| TGAGAGGCTTTGCTCTAGGA+TGG | 0.497344 | 8.1:-66623034 | None:intergenic |
| TCTTTGAGAGGCTTTGCTCT+AGG | 0.513133 | 8.1:-66623038 | None:intergenic |
| ATGAGAATTTGAGAAGGTGT+TGG | 0.518525 | 8.1:-66621039 | None:intergenic |
| TAGATGCATATGTGGGGACA+TGG | 0.526441 | 8.1:+66622906 | MS.gene016691:intron |
| CCTTATATGTGTAGAAAATG+TGG | 0.531273 | 8.1:+66623107 | MS.gene016691:CDS |
| CATGGATCTCAATACAGAAA+GGG | 0.536031 | 8.1:+66622924 | MS.gene016691:CDS |
| TTGCAAGAAGAAGATGAAGT+AGG | 0.553002 | 8.1:+66623287 | MS.gene016691:CDS |
| TGCAAGAAGAAGATGAAGTA+GGG | 0.562185 | 8.1:+66623288 | MS.gene016691:CDS |
| ACACATTATAAGAGAAAGCA+TGG | 0.564164 | 8.1:+66623077 | MS.gene016691:CDS |
| TTGTTGTTCAACTTATCCAA+AGG | 0.565952 | 8.1:-66621000 | None:intergenic |
| GGTAGCCTTAGCATTGCTGT+TGG | 0.572264 | 8.1:-66622972 | None:intergenic |
| TCAATGTTGTGCTTGCAACC+TGG | 0.575492 | 8.1:-66623011 | None:intergenic |
| CACAACCAACAGCAATGCTA+AGG | 0.579227 | 8.1:+66622967 | MS.gene016691:CDS |
| AGAGTTCTAAAATCTTTGAG+AGG | 0.584007 | 8.1:-66623050 | None:intergenic |
| ACATGGATCTCAATACAGAA+AGG | 0.588548 | 8.1:+66622923 | MS.gene016691:CDS |
| AAAATATGGTATTGTTTGTG+TGG | 0.602783 | 8.1:+66623182 | MS.gene016691:CDS |
| GGGTCAGAAATTGAACATGA+TGG | 0.603687 | 8.1:+66623308 | MS.gene016691:CDS |
| GGCAAATCATTTGCAGTGAA+AGG | 0.616551 | 8.1:+66623128 | MS.gene016691:CDS |
| ATGGATCTCAATACAGAAAG+GGG | 0.624745 | 8.1:+66622925 | MS.gene016691:CDS |
| AGAACACATGAGAAGAATTG+TGG | 0.625082 | 8.1:+66623158 | MS.gene016691:CDS |
| ACAGGACATGAGAATTGTGT+AGG | 0.627887 | 8.1:-66621066 | None:intergenic |
| TCAGAAATTGAACATGATGG+TGG | 0.646397 | 8.1:+66623311 | MS.gene016691:CDS |
| TTGGATAAGTTGAACAACAA+GGG | 0.662388 | 8.1:+66621003 | MS.gene016691:CDS |
| TTTGGATAAGTTGAACAACA+AGG | 0.664103 | 8.1:+66621002 | MS.gene016691:CDS |
| AGCACCATGACCATAACCAA+AGG | 0.668968 | 8.1:-66623249 | None:intergenic |
| CCTGGTGCACAACAATAGCA+TGG | 0.670992 | 8.1:-66622993 | None:intergenic |
| GGACCAATGAGAATTTGAGA+AGG | 0.682153 | 8.1:-66621045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTATTTTTTT+AGG | + | chr8.1:66622028-66622047 | MS.gene016691:intron | 0.0% |
| !! | AAATAAAATATATAAACCAT+GGG | - | chr8.1:66622627-66622646 | None:intergenic | 10.0% |
| !! | AATAATAACTAAAAAGATTA+TGG | + | chr8.1:66622731-66622750 | MS.gene016691:intron | 10.0% |
| !! | TAAATAAAATATATAAACCA+TGG | - | chr8.1:66622628-66622647 | None:intergenic | 10.0% |
| !! | TATAATCTGAAAAATAAATA+TGG | + | chr8.1:66622446-66622465 | MS.gene016691:intron | 10.0% |
| !!! | AAATTTGTTATTTCTTTTAT+AGG | + | chr8.1:66622592-66622611 | MS.gene016691:intron | 10.0% |
| !!! | AATTTTTTTATTTTTTGAAG+AGG | - | chr8.1:66622577-66622596 | None:intergenic | 10.0% |
| !!! | TATTTTCTTTTCTAAATTTA+GGG | - | chr8.1:66621247-66621266 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTTCTAAATTT+AGG | - | chr8.1:66621248-66621267 | None:intergenic | 10.0% |
| !! | AATTATGATGATTGTATATT+TGG | - | chr8.1:66622173-66622192 | None:intergenic | 15.0% |
| !! | ATAATTTAGTAGTTAATTGA+TGG | + | chr8.1:66622864-66622883 | MS.gene016691:intron | 15.0% |
| !! | ATTATGATGATTGTATATTT+GGG | - | chr8.1:66622172-66622191 | None:intergenic | 15.0% |
| !! | TAATTTAGTAGTTAATTGAT+GGG | + | chr8.1:66622865-66622884 | MS.gene016691:intron | 15.0% |
| !! | TAGAAATATAATTAAAACCT+TGG | + | chr8.1:66621816-66621835 | MS.gene016691:intron | 15.0% |
| !!! | ATTTTCTTTTCTAAATTTAG+GGG | - | chr8.1:66621246-66621265 | None:intergenic | 15.0% |
| !!! | TTAGGTTTTTTTTTTTTTGA+AGG | + | chr8.1:66622491-66622510 | MS.gene016691:intron | 15.0% |
| !!! | TTTGTTACTTTCTTTTTTTA+GGG | + | chr8.1:66622086-66622105 | MS.gene016691:intron | 15.0% |
| !!! | TTTTGTTACTTTCTTTTTTT+AGG | + | chr8.1:66622085-66622104 | MS.gene016691:intron | 15.0% |
| !!! | TTTTTTATTTTTTTAGGAGA+AGG | + | chr8.1:66622034-66622053 | MS.gene016691:intron | 15.0% |
| !! | AATATAATTAAAACCTTGGA+TGG | + | chr8.1:66621820-66621839 | MS.gene016691:intron | 20.0% |
| !! | ATTAGAACAATTTCTACAAA+AGG | - | chr8.1:66621725-66621744 | None:intergenic | 20.0% |
| !! | TATAATTTAGACATAACCAT+GGG | - | chr8.1:66622422-66622441 | None:intergenic | 20.0% |
| !! | TGTGTGAATAATAAAAATGT+AGG | - | chr8.1:66621883-66621902 | None:intergenic | 20.0% |
| !! | TTAGAACAATTTCTACAAAA+GGG | - | chr8.1:66621724-66621743 | None:intergenic | 20.0% |
| !!! | AAACCAAGTATTAGTATTTT+TGG | - | chr8.1:66621943-66621962 | None:intergenic | 20.0% |
| !!! | AAGTTTTCAAGATCTAAATA+TGG | - | chr8.1:66621139-66621158 | None:intergenic | 20.0% |
| !!! | ATTTTGTAACAAGAAAACTA+AGG | + | chr8.1:66622781-66622800 | MS.gene016691:intron | 20.0% |
| !!! | CATGACTTTATATTTAAGTT+AGG | + | chr8.1:66622473-66622492 | MS.gene016691:intron | 20.0% |
| !!! | TTTCTTTAGTTACTGTTTTT+TGG | + | chr8.1:66622005-66622024 | MS.gene016691:intron | 20.0% |
| !!! | TTTGAAGGAATATTTAAGTT+AGG | + | chr8.1:66622506-66622525 | MS.gene016691:intron | 20.0% |
| ! | AAAAACTCATCACTAATTCA+CGG | + | chr8.1:66622285-66622304 | MS.gene016691:intron | 25.0% |
| ! | AAAATATGGTATTGTTTGTG+TGG | + | chr8.1:66623182-66623201 | MS.gene016691:CDS | 25.0% |
| ! | AAATTAGCACATGAATATGA+AGG | + | chr8.1:66621912-66621931 | MS.gene016691:intron | 25.0% |
| ! | AAGATGCACATAAAAATTCA+AGG | - | chr8.1:66622130-66622149 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAACATGCAAA+AGG | - | chr8.1:66621325-66621344 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAACATGCAAAA+GGG | - | chr8.1:66621324-66621343 | None:intergenic | 25.0% |
| ! | ATGAATGATTATGCCATTAT+GGG | + | chr8.1:66622659-66622678 | MS.gene016691:intron | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | + | chr8.1:66621183-66621202 | MS.gene016691:intron | 25.0% |
| ! | ATTTCTCAGACATCAATTAA+AGG | - | chr8.1:66621669-66621688 | None:intergenic | 25.0% |
| ! | CTATAATTTAGACATAACCA+TGG | - | chr8.1:66622423-66622442 | None:intergenic | 25.0% |
| ! | GAACTTATTGTAAGTAAGTT+TGG | + | chr8.1:66622256-66622275 | MS.gene016691:intron | 25.0% |
| ! | GATTCTTGATACACATATTT+AGG | - | chr8.1:66621179-66621198 | None:intergenic | 25.0% |
| ! | TATGAATGATTATGCCATTA+TGG | + | chr8.1:66622658-66622677 | MS.gene016691:intron | 25.0% |
| ! | TTCATATTCATGTGCTAATT+TGG | - | chr8.1:66621913-66621932 | None:intergenic | 25.0% |
| !! | GATATTTGAAACTAAGAAGA+AGG | - | chr8.1:66621344-66621363 | None:intergenic | 25.0% |
| !! | GCTCAGATTTTAAACATAAA+AGG | + | chr8.1:66623204-66623223 | MS.gene016691:CDS | 25.0% |
| !!! | AGGTAGTGTTCTTTTTTTTT+TGG | + | chr8.1:66622054-66622073 | MS.gene016691:intron | 25.0% |
| AAAAACATGCAAAAGGGATA+TGG | - | chr8.1:66621318-66621337 | None:intergenic | 30.0% | |
| AAAGACCATATTAAAGCCTT+TGG | + | chr8.1:66623233-66623252 | MS.gene016691:CDS | 30.0% | |
| ACACATTATAAGAGAAAGCA+TGG | + | chr8.1:66623077-66623096 | MS.gene016691:CDS | 30.0% | |
| AGAAGAATTGTGGCAAAATA+TGG | + | chr8.1:66623168-66623187 | MS.gene016691:CDS | 30.0% | |
| CATAAAAATTCAAGGAATGG+TGG | - | chr8.1:66622122-66622141 | None:intergenic | 30.0% | |
| CATATTAAAGCCTTTGGTTA+TGG | + | chr8.1:66623239-66623258 | MS.gene016691:CDS | 30.0% | |
| CCTTATATGTGTAGAAAATG+TGG | + | chr8.1:66623107-66623126 | MS.gene016691:CDS | 30.0% | |
| CTCATCAAATTGCATAGAAA+TGG | + | chr8.1:66620936-66620955 | MS.gene016691:CDS | 30.0% | |
| GCACATAAAAATTCAAGGAA+TGG | - | chr8.1:66622125-66622144 | None:intergenic | 30.0% | |
| GTCTGTGATAAGATCATATA+TGG | + | chr8.1:66621641-66621660 | MS.gene016691:intron | 30.0% | |
| TGTAACAAGAAAACTAAGGA+GGG | + | chr8.1:66622785-66622804 | MS.gene016691:intron | 30.0% | |
| TTGCAACTAACGTACAAATT+TGG | - | chr8.1:66622231-66622250 | None:intergenic | 30.0% | |
| TTGTAACAAGAAAACTAAGG+AGG | + | chr8.1:66622784-66622803 | MS.gene016691:intron | 30.0% | |
| ! | ATTGTAAGTAAGTTTGGTGA+AGG | + | chr8.1:66622262-66622281 | MS.gene016691:intron | 30.0% |
| ! | CATAACCAAAGGCTTTAATA+TGG | - | chr8.1:66623241-66623260 | None:intergenic | 30.0% |
| ! | CATTGTTTAATTTCCATCCA+AGG | - | chr8.1:66621836-66621855 | None:intergenic | 30.0% |
| ! | CCACATTTTCTACACATATA+AGG | - | chr8.1:66623110-66623129 | None:intergenic | 30.0% |
| ! | TGTGTCTGTCTTCAATTTTA+TGG | + | chr8.1:66621968-66621987 | MS.gene016691:intron | 30.0% |
| ! | TTGCTAACTTGTCTTTATCA+TGG | + | chr8.1:66621754-66621773 | MS.gene016691:intron | 30.0% |
| ! | TTGGATAAGTTGAACAACAA+GGG | + | chr8.1:66621003-66621022 | MS.gene016691:CDS | 30.0% |
| ! | TTGTTGTTCAACTTATCCAA+AGG | - | chr8.1:66621003-66621022 | None:intergenic | 30.0% |
| ! | TTTGGATAAGTTGAACAACA+AGG | + | chr8.1:66621002-66621021 | MS.gene016691:CDS | 30.0% |
| !! | AGAGTTCTAAAATCTTTGAG+AGG | - | chr8.1:66623053-66623072 | None:intergenic | 30.0% |
| !! | GATTTTTAGATGCATATGTG+GGG | + | chr8.1:66622900-66622919 | MS.gene016691:intron | 30.0% |
| !! | GGATTTTTAGATGCATATGT+GGG | + | chr8.1:66622899-66622918 | MS.gene016691:intron | 30.0% |
| !! | TGGATTTTTAGATGCATATG+TGG | + | chr8.1:66622898-66622917 | MS.gene016691:intron | 30.0% |
| !!! | TTTTCATTGATTTGCAGTAC+TGG | - | chr8.1:66621508-66621527 | None:intergenic | 30.0% |
| ACACCTTCTCAAATTCTCAT+TGG | + | chr8.1:66621042-66621061 | MS.gene016691:CDS | 35.0% | |
| ACATGGATCTCAATACAGAA+AGG | + | chr8.1:66622923-66622942 | MS.gene016691:CDS | 35.0% | |
| AGAACACATGAGAAGAATTG+TGG | + | chr8.1:66623158-66623177 | MS.gene016691:CDS | 35.0% | |
| AGATGGACACAATACTATTG+AGG | + | chr8.1:66622383-66622402 | MS.gene016691:intron | 35.0% | |
| ATGGATCTCAATACAGAAAG+GGG | + | chr8.1:66622925-66622944 | MS.gene016691:CDS | 35.0% | |
| CAACAGATACAACAATCTTC+AGG | + | chr8.1:66621104-66621123 | MS.gene016691:CDS | 35.0% | |
| CATAGAAATGGCTGAAAAAG+AGG | + | chr8.1:66620948-66620967 | MS.gene016691:CDS | 35.0% | |
| CATGGATCTCAATACAGAAA+GGG | + | chr8.1:66622924-66622943 | MS.gene016691:CDS | 35.0% | |
| GGGCCAAAAATACTAATACT+TGG | + | chr8.1:66621937-66621956 | MS.gene016691:intron | 35.0% | |
| GTAACAAGAAAACTAAGGAG+GGG | + | chr8.1:66622786-66622805 | MS.gene016691:intron | 35.0% | |
| TAGCACATGAATATGAAGGA+GGG | + | chr8.1:66621916-66621935 | MS.gene016691:intron | 35.0% | |
| TCAGAAATTGAACATGATGG+TGG | + | chr8.1:66623311-66623330 | MS.gene016691:CDS | 35.0% | |
| TGCAAGAAGAAGATGAAGTA+GGG | + | chr8.1:66623288-66623307 | MS.gene016691:CDS | 35.0% | |
| TTAGCACATGAATATGAAGG+AGG | + | chr8.1:66621915-66621934 | MS.gene016691:intron | 35.0% | |
| TTATAGGTTTAAGTCTCCCA+TGG | + | chr8.1:66622608-66622627 | MS.gene016691:intron | 35.0% | |
| TTCTGAACATCAACAACCTT+TGG | + | chr8.1:66620984-66621003 | MS.gene016691:CDS | 35.0% | |
| TTGCAAGAAGAAGATGAAGT+AGG | + | chr8.1:66623287-66623306 | MS.gene016691:CDS | 35.0% | |
| ! | AATTGATGGGTGCATCTTTA+TGG | + | chr8.1:66622878-66622897 | MS.gene016691:intron | 35.0% |
| ! | ATGAGAATTTGAGAAGGTGT+TGG | - | chr8.1:66621042-66621061 | None:intergenic | 35.0% |
| !! | TGTGATCCTTTTAGAGAATC+TGG | - | chr8.1:66622951-66622970 | None:intergenic | 35.0% |
| !!! | TTGAAAGTTTTAGAGCACAC+AGG | - | chr8.1:66621087-66621106 | None:intergenic | 35.0% |
| AAAGCCTTTGGTTATGGTCA+TGG | + | chr8.1:66623245-66623264 | MS.gene016691:CDS | 40.0% | |
| ACAGGACATGAGAATTGTGT+AGG | - | chr8.1:66621069-66621088 | None:intergenic | 40.0% | |
| AGCACATGAATATGAAGGAG+GGG | + | chr8.1:66621917-66621936 | MS.gene016691:intron | 40.0% | |
| AGGATAATTCTAAGCTCCCA+TGG | + | chr8.1:66622403-66622422 | MS.gene016691:intron | 40.0% | |
| CATTTGCAGTGAAAGGTGAT+TGG | + | chr8.1:66623135-66623154 | MS.gene016691:CDS | 40.0% | |
| GGACCAATGAGAATTTGAGA+AGG | - | chr8.1:66621048-66621067 | None:intergenic | 40.0% | |
| GGCAAATCATTTGCAGTGAA+AGG | + | chr8.1:66623128-66623147 | MS.gene016691:CDS | 40.0% | |
| GGGTCAGAAATTGAACATGA+TGG | + | chr8.1:66623308-66623327 | MS.gene016691:CDS | 40.0% | |
| TGAACAACAAGGGTCAGTAT+TGG | + | chr8.1:66621013-66621032 | MS.gene016691:CDS | 40.0% | |
| ! | TTACTCTCAAGTCGACTCTA+TGG | - | chr8.1:66622687-66622706 | None:intergenic | 40.0% |
| !! | GTGCTCTGAAAAAGTTGAAG+TGG | - | chr8.1:66621578-66621597 | None:intergenic | 40.0% |
| AAGGGGCCAGATTCTCTAAA+AGG | + | chr8.1:66622942-66622961 | MS.gene016691:CDS | 45.0% | |
| AGCACCATGACCATAACCAA+AGG | - | chr8.1:66623252-66623271 | None:intergenic | 45.0% | |
| CACAACCAACAGCAATGCTA+AGG | + | chr8.1:66622967-66622986 | MS.gene016691:CDS | 45.0% | |
| TAGATGCATATGTGGGGACA+TGG | + | chr8.1:66622906-66622925 | MS.gene016691:intron | 45.0% | |
| TCAATGTTGTGCTTGCAACC+TGG | - | chr8.1:66623014-66623033 | None:intergenic | 45.0% | |
| TGATTCTCTCTCTGCAGAGA+TGG | + | chr8.1:66622366-66622385 | MS.gene016691:intron | 45.0% | |
| ! | GGTTATGGTCATGGTGCTTT+TGG | + | chr8.1:66623254-66623273 | MS.gene016691:CDS | 45.0% |
| ! | TCTTTGAGAGGCTTTGCTCT+AGG | - | chr8.1:66623041-66623060 | None:intergenic | 45.0% |
| CCATGCTATTGTTGTGCACC+AGG | + | chr8.1:66622993-66623012 | MS.gene016691:CDS | 50.0% | |
| CCTGGTGCACAACAATAGCA+TGG | - | chr8.1:66622996-66623015 | None:intergenic | 50.0% | |
| CGACTCTATGGCACCCATAA+TGG | - | chr8.1:66622675-66622694 | None:intergenic | 50.0% | |
| ! | GGTAGCCTTAGCATTGCTGT+TGG | - | chr8.1:66622975-66622994 | None:intergenic | 50.0% |
| !! | TGAGAGGCTTTGCTCTAGGA+TGG | - | chr8.1:66623037-66623056 | None:intergenic | 50.0% |
| CTGGTGCAGCACAGTGTTCT+AGG | - | chr8.1:66621489-66621508 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 66620931 | 66623346 | 66620931 | ID=MS.gene016691 |
| chr8.1 | mRNA | 66620931 | 66623346 | 66620931 | ID=MS.gene016691.t1;Parent=MS.gene016691 |
| chr8.1 | exon | 66620931 | 66621125 | 66620931 | ID=MS.gene016691.t1.exon1;Parent=MS.gene016691.t1 |
| chr8.1 | CDS | 66620931 | 66621125 | 66620931 | ID=cds.MS.gene016691.t1;Parent=MS.gene016691.t1 |
| chr8.1 | exon | 66622909 | 66623346 | 66622909 | ID=MS.gene016691.t1.exon2;Parent=MS.gene016691.t1 |
| chr8.1 | CDS | 66622909 | 66623346 | 66622909 | ID=cds.MS.gene016691.t1;Parent=MS.gene016691.t1 |
| Gene Sequence |
| Protein sequence |
