AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016706

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016706.t1 MTR_8g036235 90.301 299 20 3 1 298 87 377 0.0 528
MS.gene016706.t1 MTR_8g036235 90.217 276 18 3 1 275 87 354 7.90e-173 484
MS.gene016706.t1 MTR_3g027650 57.516 306 83 11 13 298 105 383 4.95e-100 299
MS.gene016706.t1 MTR_3g028520 57.516 306 83 11 13 298 105 383 5.24e-100 299
MS.gene016706.t1 MTR_3g027650 57.516 306 83 11 13 298 105 383 5.24e-100 299
MS.gene016706.t1 MTR_3g027650 56.184 283 77 11 13 275 105 360 6.01e-87 265
MS.gene016706.t1 MTR_1g052470 44.186 258 125 6 51 298 111 359 2.46e-50 171
MS.gene016706.t1 MTR_4g065870 40.726 248 118 10 68 298 181 416 4.58e-44 155
MS.gene016706.t1 MTR_2g098310 41.463 246 115 7 66 296 160 391 4.94e-44 155
MS.gene016706.t1 MTR_2g098310 42.213 244 116 7 66 296 160 391 6.51e-44 154
MS.gene016706.t1 MTR_4g065870 40.726 248 118 10 68 298 181 416 7.65e-44 155
MS.gene016706.t1 MTR_7g092540 39.095 243 106 4 68 298 92 304 1.34e-37 135
MS.gene016706.t1 MTR_7g092540 39.095 243 106 4 68 298 92 304 2.77e-37 135
MS.gene016706.t1 MTR_2g098310 36.918 279 116 8 66 296 160 426 9.88e-37 136
MS.gene016706.t1 MTR_4g065870 38.222 225 110 10 68 275 181 393 3.84e-32 123
MS.gene016706.t1 MTR_2g098310 39.013 223 111 7 66 275 160 370 1.62e-31 121
MS.gene016706.t1 MTR_4g033295 71.053 76 20 1 223 298 106 179 2.91e-30 113
MS.gene016706.t1 MTR_4g033295 71.053 76 20 1 223 298 106 179 7.86e-30 112
MS.gene016706.t1 MTR_1g116790 52.137 117 37 3 184 298 227 326 2.98e-29 114
MS.gene016706.t1 MTR_1g052470 39.906 213 109 6 51 253 111 314 1.48e-27 109
MS.gene016706.t1 MTR_2g098310 35.961 203 101 7 66 253 160 348 1.75e-21 93.2
MS.gene016706.t1 MTR_4g033295 75.472 53 11 1 223 275 106 156 2.74e-19 84.0
MS.gene016706.t1 MTR_6g052280 53.750 80 37 0 196 275 13 92 1.82e-18 80.1
MS.gene016706.t1 MTR_4g131160 58.730 63 25 1 236 298 195 256 2.53e-15 75.9
MS.gene016706.t1 MTR_4g131160 58.730 63 25 1 236 298 198 259 2.69e-15 75.9
MS.gene016706.t1 MTR_1g080890 57.143 63 26 1 236 298 192 253 9.49e-14 71.2
MS.gene016706.t1 MTR_3g498825 51.613 62 30 0 237 298 147 208 9.64e-13 68.2
MS.gene016706.t1 MTR_3g116770 45.946 74 40 0 225 298 179 252 2.11e-12 67.4
MS.gene016706.t1 MTR_3g116770 45.946 74 40 0 225 298 179 252 2.12e-12 67.4
MS.gene016706.t1 MTR_1g017350 42.169 83 40 1 216 298 247 321 2.18e-12 67.4
MS.gene016706.t1 MTR_1g017350 42.169 83 40 1 216 298 247 321 2.32e-12 67.4
MS.gene016706.t1 MTR_1g017350 42.169 83 40 1 216 298 247 321 2.83e-12 67.0
MS.gene016706.t1 MTR_1g017350 42.169 83 40 1 216 298 247 321 2.87e-12 67.0
MS.gene016706.t1 MTR_7g053410 48.387 62 32 0 237 298 317 378 3.90e-12 67.0
MS.gene016706.t1 MTR_7g053410 48.387 62 32 0 237 298 317 378 4.40e-12 66.6
MS.gene016706.t1 MTR_8g012290 48.387 62 32 0 237 298 291 352 5.71e-12 66.2
MS.gene016706.t1 MTR_8g012290 48.387 62 32 0 237 298 291 352 5.82e-12 66.2
MS.gene016706.t1 MTR_8g065740 48.387 62 32 0 237 298 305 366 8.90e-12 65.5
MS.gene016706.t1 MTR_5g048860 44.000 75 34 1 224 298 360 426 9.81e-12 65.9
MS.gene016706.t1 MTR_4g070320 46.774 62 33 0 237 298 143 204 4.68e-11 63.2
MS.gene016706.t1 MTR_1g018090 50.794 63 30 1 236 298 273 334 5.03e-11 63.2
MS.gene016706.t1 MTR_5g005110 50.794 63 30 1 236 298 223 284 5.26e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016706.t1 AT2G42280 40.664 241 104 5 68 298 129 340 8.71e-42 148
MS.gene016706.t1 AT2G42280 40.664 241 104 5 68 298 129 340 1.44e-41 147
MS.gene016706.t1 AT2G43140 40.816 245 115 7 60 298 72 292 3.07e-36 132
MS.gene016706.t1 AT2G43140 44.828 174 71 4 126 298 46 195 4.81e-35 126
MS.gene016706.t1 AT1G51140 37.607 234 123 8 69 298 151 365 1.78e-33 126
MS.gene016706.t1 AT1G05805 36.131 274 132 8 29 298 110 344 1.18e-32 124
MS.gene016706.t1 AT1G35460 65.789 76 24 1 223 298 169 242 9.41e-28 108
MS.gene016706.t1 AT4G09180 54.000 100 46 0 199 298 146 245 6.64e-27 106
MS.gene016706.t1 AT2G42280 35.204 196 88 5 68 253 129 295 2.97e-19 86.3
MS.gene016706.t1 AT1G35460 64.286 56 18 1 223 278 169 222 4.07e-16 76.3
MS.gene016706.t1 AT2G24260 58.730 63 25 1 236 298 34 95 1.56e-15 75.1
MS.gene016706.t1 AT2G24260 57.812 64 26 1 235 298 136 198 3.18e-15 75.5
MS.gene016706.t1 AT4G30980 57.143 63 26 1 236 298 129 190 6.83e-15 73.9
MS.gene016706.t1 AT4G30980 57.143 63 26 1 236 298 177 238 1.17e-14 73.9
MS.gene016706.t1 AT5G58010 55.556 63 27 1 236 298 98 159 1.89e-14 72.8
MS.gene016706.t1 AT4G34530 51.613 62 30 0 237 298 172 233 4.37e-13 68.9
MS.gene016706.t1 AT5G50915 50.000 62 31 0 237 298 136 197 1.08e-12 67.4
MS.gene016706.t1 AT5G50915 50.000 62 31 0 237 298 136 197 1.08e-12 67.4
MS.gene016706.t1 AT5G50915 50.000 62 31 0 237 298 136 197 1.24e-12 67.4
MS.gene016706.t1 AT5G50915 50.000 62 31 0 237 298 136 197 1.24e-12 67.4
MS.gene016706.t1 AT1G68920 42.222 90 47 1 214 298 274 363 2.53e-12 67.4
MS.gene016706.t1 AT1G68920 42.222 90 47 1 214 298 275 364 2.67e-12 67.4
MS.gene016706.t1 AT1G68920 42.222 90 47 1 214 298 275 364 2.67e-12 67.4
MS.gene016706.t1 AT1G68920 42.222 90 47 1 214 298 275 364 2.67e-12 67.4
MS.gene016706.t1 AT1G10120 41.667 84 41 1 215 298 192 267 5.71e-12 65.9
MS.gene016706.t1 AT1G10120 41.667 84 41 1 215 298 192 267 5.71e-12 65.9
MS.gene016706.t1 AT4G33880 46.988 83 39 2 216 298 249 326 5.76e-12 65.9
MS.gene016706.t1 AT1G26260 50.000 62 31 0 237 298 201 262 9.40e-12 65.5
MS.gene016706.t1 AT3G07340 48.387 62 32 0 237 298 258 319 9.59e-12 65.5
MS.gene016706.t1 AT3G07340 48.387 62 32 0 237 298 258 319 9.63e-12 65.5
MS.gene016706.t1 AT1G26260 50.000 62 31 0 237 298 223 284 1.00e-11 65.5
MS.gene016706.t1 AT1G26260 50.000 62 31 0 237 298 223 284 1.00e-11 65.5
MS.gene016706.t1 AT1G26260 50.000 62 31 0 237 298 223 284 1.00e-11 65.5
MS.gene016706.t1 AT1G26260 50.000 62 31 0 237 298 223 284 1.00e-11 65.5
MS.gene016706.t1 AT1G26260 50.000 62 31 0 237 298 172 233 1.09e-11 65.1
MS.gene016706.t1 AT1G27740 49.254 67 33 1 232 298 162 227 1.61e-11 63.9
MS.gene016706.t1 AT4G36540 39.506 81 49 0 218 298 122 202 4.52e-11 62.8
MS.gene016706.t1 AT4G36540 39.506 81 49 0 218 298 122 202 4.58e-11 62.8
MS.gene016706.t1 AT3G23690 45.161 62 34 0 237 298 191 252 6.04e-11 62.8
MS.gene016706.t1 AT2G18300 45.161 62 34 0 237 298 185 246 6.89e-11 62.8
MS.gene016706.t1 AT2G18300 45.161 62 34 0 237 298 185 246 7.42e-11 62.4
MS.gene016706.t1 AT2G18300 45.161 62 34 0 237 298 185 246 7.50e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTATTCCATGTGAAAA+AGG 0.176835 8.2:-62831641 None:intergenic
ACACTTCCTACCTCTCTTAA+TGG 0.183445 8.2:-62833126 None:intergenic
ACCCTCTCTGCAATGCTTCT+AGG 0.208569 8.2:-62834129 None:intergenic
ACCACTATCAACCGAATAAT+TGG 0.239497 8.2:-62831828 None:intergenic
GGATTTCCAAATGGTTCTTT+AGG 0.260650 8.2:+62831722 MS.gene016706:CDS
CAATACAATGATTACTCTTA+TGG 0.263413 8.2:+62831659 MS.gene016706:CDS
TGTTGCCAGAATGTAGATTT+TGG 0.268670 8.2:+62833970 MS.gene016706:intron
TATATTACCTTATCTGCATT+TGG 0.272226 8.2:-62834299 None:intergenic
CAATTTGCTTGAAGAGCTTC+AGG 0.284637 8.2:-62833252 None:intergenic
AGAGAGGTAGGAAGTGTAAA+TGG 0.308528 8.2:+62833132 MS.gene016706:CDS
TTCTTCCAAGATGGCTACTA+TGG 0.309052 8.2:+62834038 MS.gene016706:CDS
ATCCTTGATTATGTTGAGTT+TGG 0.317397 8.2:-62831703 None:intergenic
GTGAGTGGCAAAGCCTCTTT+TGG 0.336425 8.2:-62834106 None:intergenic
ATATTACCTTATCTGCATTT+GGG 0.367954 8.2:-62834298 None:intergenic
TCCAATTATTCGGTTGATAG+TGG 0.369287 8.2:+62831827 MS.gene016706:CDS
CCCTCTCTGCAATGCTTCTA+GGG 0.373214 8.2:-62834128 None:intergenic
CTTCTCCATAGTAGCCATCT+TGG 0.374024 8.2:-62834043 None:intergenic
CCTTATCTGCATTTGGGAAA+AGG 0.377597 8.2:-62834292 None:intergenic
ACTACATCATCTAGTGGATA+TGG 0.382484 8.2:+62833162 MS.gene016706:CDS
CACTGACAAAGATTCAGAAT+TGG 0.412608 8.2:-62831600 None:intergenic
AGAAACATGGGAAATGATAA+TGG 0.418925 8.2:+62833285 MS.gene016706:CDS
TTCAAATGCTTTGGAAAGTC+AGG 0.424743 8.2:+62833419 MS.gene016706:CDS
TCAACACCTAAAGAACCATT+TGG 0.425199 8.2:-62831728 None:intergenic
GTCAGTGAAACAAGAAGAAA+AGG 0.444248 8.2:+62831616 MS.gene016706:CDS
CCCTAGAAGCATTGCAGAGA+GGG 0.444514 8.2:+62834128 MS.gene016706:CDS
AATGGTTCTTTAGGTGTTGA+AGG 0.450234 8.2:+62831731 MS.gene016706:CDS
TGTAAAATTCGTGCCAAAAG+AGG 0.450273 8.2:+62834093 MS.gene016706:CDS
ATAATTGCTCCAATCTCATT+AGG 0.465778 8.2:+62831777 MS.gene016706:CDS
CTAGCTTCACCAATGACTAC+TGG 0.472078 8.2:+62833328 MS.gene016706:CDS
CATAATCAAGGATTTCCAAA+TGG 0.493678 8.2:+62831713 MS.gene016706:CDS
AGAACTATCCCAGTAGTCAT+TGG 0.495345 8.2:-62833337 None:intergenic
AGCTAGGCAGACTCAAATGA+TGG 0.495751 8.2:-62834014 None:intergenic
AACTAGCACTGCTGATATGT+TGG 0.496568 8.2:+62834538 MS.gene016706:CDS
AGAGCTCAGGAAACAACTTA+AGG 0.497819 8.2:+62834583 MS.gene016706:CDS
TTGAGTACATTAAAGAGCTC+AGG 0.507440 8.2:+62834570 MS.gene016706:CDS
TACCAAACTCAACATAATCA+AGG 0.522748 8.2:+62831701 MS.gene016706:CDS
GCCTAGCTCTTCTTCCAAGA+TGG 0.534945 8.2:+62834029 MS.gene016706:CDS
ACTTTCCAAAGCATTTGAAG+TGG 0.539932 8.2:-62833415 None:intergenic
TTTGCACCATTAAGAGAGGT+AGG 0.543973 8.2:+62833120 MS.gene016706:CDS
TGTATTAAAAGTAGAAACAT+GGG 0.555635 8.2:+62833273 MS.gene016706:CDS
TAGCTTCACCAATGACTACT+GGG 0.565945 8.2:+62833329 MS.gene016706:CDS
AGATTCAGAATTGGTAAACA+TGG 0.566542 8.2:-62831591 None:intergenic
TTGTATTAAAAGTAGAAACA+TGG 0.569384 8.2:+62833272 MS.gene016706:CDS
CAGTAGTCATTGGTGAAGCT+AGG 0.577944 8.2:-62833327 None:intergenic
TGGCATCTTGATAGAGCAAG+AGG 0.582833 8.2:-62833211 None:intergenic
TGCAATGCTTCTAGGGTGAG+TGG 0.590036 8.2:-62834121 None:intergenic
CAAGCTACTACATCATCTAG+TGG 0.611174 8.2:+62833156 MS.gene016706:CDS
GCCATCTTGGAAGAAGAGCT+AGG 0.619465 8.2:-62834030 None:intergenic
ATCTTGATAGAGCAAGAGGA+TGG 0.627820 8.2:-62833207 None:intergenic
GCTAGGCAGACTCAAATGAT+GGG 0.628811 8.2:-62834013 None:intergenic
ACCCTAGAAGCATTGCAGAG+AGG 0.691130 8.2:+62834127 MS.gene016706:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTATATTTTACTTTGT+AGG + chr8.2:62833067-62833086 MS.gene016706:intron 15.0%
!!! AAAGTATATTTTACTTTGTA+GGG + chr8.2:62833068-62833087 MS.gene016706:intron 15.0%
!!! AAATATATGCATATTTTTCT+AGG + chr8.2:62832607-62832626 MS.gene016706:intron 15.0%
!!! AGTAAAATATACTTTTTCAA+TGG - chr8.2:62833063-62833082 None:intergenic 15.0%
!!! ATACTAAAATTTAGTTTAGA+AGG + chr8.2:62832570-62832589 MS.gene016706:intron 15.0%
!! ATTGCAAAAAATTGTGAAAT+CGG - chr8.2:62833647-62833666 None:intergenic 20.0%
!! CTAAGTATAATCTTTACAAA+AGG - chr8.2:62833486-62833505 None:intergenic 20.0%
!! GAATAGACAATTAATTATCT+TGG + chr8.2:62832461-62832480 MS.gene016706:intron 20.0%
!! GATAATATAGTAAAGCAATT+GGG + chr8.2:62832334-62832353 MS.gene016706:intron 20.0%
!! TAATTAATTGTCTATTCATC+AGG - chr8.2:62832458-62832477 None:intergenic 20.0%
!! TAATTATCTTGGACATTATT+AGG + chr8.2:62832472-62832491 MS.gene016706:intron 20.0%
!! TCAACAATGATAAAAGTTTA+AGG - chr8.2:62833936-62833955 None:intergenic 20.0%
!! TCTAAAAAAACTTGTACTAA+TGG + chr8.2:62833092-62833111 MS.gene016706:intron 20.0%
!! TGAAATTTGTGATTATAGAA+AGG - chr8.2:62834165-62834184 None:intergenic 20.0%
!! TGATAATATAGTAAAGCAAT+TGG + chr8.2:62832333-62832352 MS.gene016706:intron 20.0%
!! TGTATTAAAAGTAGAAACAT+GGG + chr8.2:62833273-62833292 MS.gene016706:CDS 20.0%
!! TTGTATTAAAAGTAGAAACA+TGG + chr8.2:62833272-62833291 MS.gene016706:CDS 20.0%
!! TTTCCATAAAAAATAAGAAC+AGG - chr8.2:62832211-62832230 None:intergenic 20.0%
!!! AACTTTTTGAGTAAAAATTC+TGG - chr8.2:62833682-62833701 None:intergenic 20.0%
!!! AGATTCAAAATTTTGGTTTT+TGG - chr8.2:62833860-62833879 None:intergenic 20.0%
!!! ATACCTGTTCTTATTTTTTA+TGG + chr8.2:62832205-62832224 MS.gene016706:intron 20.0%
!!! ATTTCTTTTTTGATAATGCT+TGG + chr8.2:62831931-62831950 MS.gene016706:intron 20.0%
!!! ATTTTTTAGTAGAGAATAGT+AGG + chr8.2:62833889-62833908 MS.gene016706:intron 20.0%
!!! CAAAATGAGATTCAAAATTT+TGG - chr8.2:62833867-62833886 None:intergenic 20.0%
!!! TATGCTTTTTTTATCTTACT+TGG + chr8.2:62831850-62831869 MS.gene016706:intron 20.0%
!!! TCTAAGAAAAGTAATTTTGT+AGG + chr8.2:62832174-62832193 MS.gene016706:intron 20.0%
!!! TTACTTGGTAATATCTATTA+TGG + chr8.2:62831865-62831884 MS.gene016706:intron 20.0%
! AAACAAGACATGTATTGTTA+AGG - chr8.2:62832782-62832801 None:intergenic 25.0%
! AACAAGACATGTATTGTTAA+GGG - chr8.2:62832781-62832800 None:intergenic 25.0%
! ACATAACACATCATATTGTT+GGG + chr8.2:62834459-62834478 MS.gene016706:intron 25.0%
! ATATTACCTTATCTGCATTT+GGG - chr8.2:62834301-62834320 None:intergenic 25.0%
! ATCAAGCTCAAATCTATTAT+CGG + chr8.2:62831955-62831974 MS.gene016706:intron 25.0%
! ATTGTATTCCATGTGAAAAA+GGG - chr8.2:62831643-62831662 None:intergenic 25.0%
! CAATAATACTGCACAAAATA+GGG - chr8.2:62832315-62832334 None:intergenic 25.0%
! CAATACAATGATTACTCTTA+TGG + chr8.2:62831659-62831678 MS.gene016706:CDS 25.0%
! CCAAAAAATGCTACTAATAA+GGG + chr8.2:62833378-62833397 MS.gene016706:CDS 25.0%
! CTCTCTTTAGATTCAAAATT+CGG - chr8.2:62833716-62833735 None:intergenic 25.0%
! GGATCAACTAAAAATTTAAG+AGG + chr8.2:62832101-62832120 MS.gene016706:intron 25.0%
! GTAAAAGTAGTTTATGCATA+AGG - chr8.2:62832826-62832845 None:intergenic 25.0%
! TAAAACACAACAAAAAAGCA+GGG - chr8.2:62834370-62834389 None:intergenic 25.0%
! TATATTACCTTATCTGCATT+TGG - chr8.2:62834302-62834321 None:intergenic 25.0%
! TATATTTACTTAACACACGA+TGG + chr8.2:62832656-62832675 MS.gene016706:intron 25.0%
! TATTGTATTCCATGTGAAAA+AGG - chr8.2:62831644-62831663 None:intergenic 25.0%
! TCAATAATACTGCACAAAAT+AGG - chr8.2:62832316-62832335 None:intergenic 25.0%
! TCCAAAAAATGCTACTAATA+AGG + chr8.2:62833377-62833396 MS.gene016706:CDS 25.0%
! TCTCTTTAGATTCAAAATTC+GGG - chr8.2:62833715-62833734 None:intergenic 25.0%
! TTAAAACACAACAAAAAAGC+AGG - chr8.2:62834371-62834390 None:intergenic 25.0%
! TTGCAAAAAATTGTGAAATC+GGG - chr8.2:62833646-62833665 None:intergenic 25.0%
!! AAATCAGGTCTTTTCTTTTA+CGG - chr8.2:62832066-62832085 None:intergenic 25.0%
!! TGAGTTTTTCTCCAATTATT+CGG + chr8.2:62831817-62831836 MS.gene016706:CDS 25.0%
!! TGTAACTTTTACTAAAACCA+CGG + chr8.2:62834393-62834412 MS.gene016706:intron 25.0%
!! TTAACAATACATGTCTTGTT+TGG + chr8.2:62832781-62832800 MS.gene016706:intron 25.0%
!!! CTTGTTTTAGGTAAAATAGT+GGG - chr8.2:62833584-62833603 None:intergenic 25.0%
!!! GAATTTCCATTTTAACCAAT+TGG + chr8.2:62833460-62833479 MS.gene016706:intron 25.0%
!!! GTTGATTTTATAAACTATCC+TGG + chr8.2:62832891-62832910 MS.gene016706:intron 25.0%
!!! TCTTGTTTTAGGTAAAATAG+TGG - chr8.2:62833585-62833604 None:intergenic 25.0%
!!! TTGAGTAAAAATTCTGGTTT+TGG - chr8.2:62833676-62833695 None:intergenic 25.0%
AAAAAACTTGTACTAATGGC+AGG + chr8.2:62833096-62833115 MS.gene016706:intron 30.0%
AAAAGGCCAATTGGTTAAAA+TGG - chr8.2:62833469-62833488 None:intergenic 30.0%
AATCTTTACAAAAGGCCAAT+TGG - chr8.2:62833478-62833497 None:intergenic 30.0%
ACAAAACATTATCACTTTCG+AGG + chr8.2:62833739-62833758 MS.gene016706:intron 30.0%
AGAAACATGGGAAATGATAA+TGG + chr8.2:62833285-62833304 MS.gene016706:CDS 30.0%
AGATTCAGAATTGGTAAACA+TGG - chr8.2:62831594-62831613 None:intergenic 30.0%
AGCACTAACAATTACACAAA+AGG - chr8.2:62831896-62831915 None:intergenic 30.0%
ATAATTGCTCCAATCTCATT+AGG + chr8.2:62831777-62831796 MS.gene016706:CDS 30.0%
ATCCTTGATTATGTTGAGTT+TGG - chr8.2:62831706-62831725 None:intergenic 30.0%
ATTACGACAATGTGTGAAAT+TGG + chr8.2:62833830-62833849 MS.gene016706:intron 30.0%
CACATAACACATCATATTGT+TGG + chr8.2:62834458-62834477 MS.gene016706:intron 30.0%
CATAATCAAGGATTTCCAAA+TGG + chr8.2:62831713-62831732 MS.gene016706:CDS 30.0%
CCATATTGTTTACCCAAAAT+TGG - chr8.2:62833798-62833817 None:intergenic 30.0%
TACCAAACTCAACATAATCA+AGG + chr8.2:62831701-62831720 MS.gene016706:CDS 30.0%
TCAAGCTCAAATCTATTATC+GGG + chr8.2:62831956-62831975 MS.gene016706:intron 30.0%
TGCAAAAAATTGTGAAATCG+GGG - chr8.2:62833645-62833664 None:intergenic 30.0%
TTAATTGTCTATTCATCAGG+AGG - chr8.2:62832455-62832474 None:intergenic 30.0%
TTACGACAATGTGTGAAATT+GGG + chr8.2:62833831-62833850 MS.gene016706:intron 30.0%
TTGGGTAAACAATATGGATT+GGG + chr8.2:62833801-62833820 MS.gene016706:intron 30.0%
TTTGGGTAAACAATATGGAT+TGG + chr8.2:62833800-62833819 MS.gene016706:intron 30.0%
! AGACAAAAGTTGCCAATTTT+GGG + chr8.2:62833783-62833802 MS.gene016706:intron 30.0%
! AGGTCTTATCTCATCAAATA+TGG - chr8.2:62832041-62832060 None:intergenic 30.0%
! CAAAATCCGGATTTTTGAAT+GGG - chr8.2:62833618-62833637 None:intergenic 30.0%
! GAAAAGTAATTTTGTAGGAG+TGG + chr8.2:62832179-62832198 MS.gene016706:intron 30.0%
! GATTTTGGATACCAAAAACT+TGG + chr8.2:62833985-62834004 MS.gene016706:CDS 30.0%
! GGTTCATTTTCAACAATTTG+TGG - chr8.2:62833234-62833253 None:intergenic 30.0%
! TCAAAATCCGGATTTTTGAA+TGG - chr8.2:62833619-62833638 None:intergenic 30.0%
! TTCACACATTGTCGTAATTT+TGG - chr8.2:62833828-62833847 None:intergenic 30.0%
!! CCAATTTTGGGTAAACAATA+TGG + chr8.2:62833795-62833814 MS.gene016706:intron 30.0%
!!! CCCTTATTAGTAGCATTTTT+TGG - chr8.2:62833381-62833400 None:intergenic 30.0%
!!! CTTATTTTTATAAGCTCTCC+AGG - chr8.2:62832912-62832931 None:intergenic 30.0%
!!! GAGGACTAAAATCTTGTTTT+AGG - chr8.2:62833596-62833615 None:intergenic 30.0%
!!! TTTTTTGATTTGCACATTGC+AGG + chr8.2:62834226-62834245 MS.gene016706:intron 30.0%
AATAGTCAACTCTCTTAGCA+AGG - chr8.2:62832401-62832420 None:intergenic 35.0%
ACCACTATCAACCGAATAAT+TGG - chr8.2:62831831-62831850 None:intergenic 35.0%
AGGTACAATGCTACAAACAT+TGG - chr8.2:62833916-62833935 None:intergenic 35.0%
CAAAAAATTGTGAAATCGGG+GGG - chr8.2:62833643-62833662 None:intergenic 35.0%
CACTGACAAAGATTCAGAAT+TGG - chr8.2:62831603-62831622 None:intergenic 35.0%
GAAGAGAAGAGGGTAAAAAT+GGG + chr8.2:62832498-62832517 MS.gene016706:intron 35.0%
GAGGGTAAAAATGGGATATT+AGG + chr8.2:62832506-62832525 MS.gene016706:intron 35.0%
GCAAAAAATTGTGAAATCGG+GGG - chr8.2:62833644-62833663 None:intergenic 35.0%
GGATTTCCAAATGGTTCTTT+AGG + chr8.2:62831722-62831741 MS.gene016706:CDS 35.0%
GGTATCCAAAATCTACATTC+TGG - chr8.2:62833978-62833997 None:intergenic 35.0%
GTCAGTGAAACAAGAAGAAA+AGG + chr8.2:62831616-62831635 MS.gene016706:CDS 35.0%
TAATTGGAGAAAAACTCAGC+AGG - chr8.2:62831815-62831834 None:intergenic 35.0%
TACGACAATGTGTGAAATTG+GGG + chr8.2:62833832-62833851 MS.gene016706:intron 35.0%
TATCTTGGACATTATTAGGC+TGG + chr8.2:62832476-62832495 MS.gene016706:intron 35.0%
TCAACACCTAAAGAACCATT+TGG - chr8.2:62831731-62831750 None:intergenic 35.0%
TGATGTGTTATGTGCTAGTT+TGG - chr8.2:62834452-62834471 None:intergenic 35.0%
TGTAAAATTCGTGCCAAAAG+AGG + chr8.2:62834093-62834112 MS.gene016706:CDS 35.0%
TTGAGTACATTAAAGAGCTC+AGG + chr8.2:62834570-62834589 MS.gene016706:CDS 35.0%
TTTAATCGTCTCTTTGTGAG+AGG - chr8.2:62833536-62833555 None:intergenic 35.0%
! AACTTTTACTAAAACCACGG+TGG + chr8.2:62834396-62834415 MS.gene016706:intron 35.0%
! ACTACATCATCTAGTGGATA+TGG + chr8.2:62833162-62833181 MS.gene016706:CDS 35.0%
! ACTCTTTTGCCTAATGAGAT+TGG - chr8.2:62831789-62831808 None:intergenic 35.0%
! ACTTTCCAAAGCATTTGAAG+TGG - chr8.2:62833418-62833437 None:intergenic 35.0%
! AGGTCTTTTCTTTTACGGTT+AGG - chr8.2:62832061-62832080 None:intergenic 35.0%
! CTTTTGGCACGAATTTTACA+TGG - chr8.2:62834093-62834112 None:intergenic 35.0%
! GAAAAGACCTGATTTTGTAG+CGG + chr8.2:62832071-62832090 MS.gene016706:intron 35.0%
! GAGAAGTTTTTACACGTTCA+AGG + chr8.2:62834060-62834079 MS.gene016706:CDS 35.0%
! GAGACAAAAGTTGCCAATTT+TGG + chr8.2:62833782-62833801 MS.gene016706:intron 35.0%
! GCAACTTTTGTCTCAGAAAA+CGG - chr8.2:62833776-62833795 None:intergenic 35.0%
! GTTTTCCACTTCAAATGCTT+TGG + chr8.2:62833410-62833429 MS.gene016706:CDS 35.0%
! GTTTTCTTCAAGAGAAGCTT+GGG + chr8.2:62832714-62832733 MS.gene016706:intron 35.0%
! TGGTTGGTCAATATTGATCA+TGG - chr8.2:62832243-62832262 None:intergenic 35.0%
! TGTTATGTGCTAGTTTGGAT+TGG - chr8.2:62834447-62834466 None:intergenic 35.0%
! TGTTGCCAGAATGTAGATTT+TGG + chr8.2:62833970-62833989 MS.gene016706:intron 35.0%
! TGTTTTCTTCAAGAGAAGCT+TGG + chr8.2:62832713-62832732 MS.gene016706:intron 35.0%
! TTGCTTGCTAGTTGTTAACT+AGG + chr8.2:62832267-62832286 MS.gene016706:intron 35.0%
!! AATGGTTCTTTAGGTGTTGA+AGG + chr8.2:62831731-62831750 MS.gene016706:CDS 35.0%
!! ACACTCCAAGATGTTAGTTT+TGG + chr8.2:62831990-62832009 MS.gene016706:intron 35.0%
!! GTTGAAGGCAATGTTTTTGA+TGG + chr8.2:62831746-62831765 MS.gene016706:CDS 35.0%
!! TCCAATTATTCGGTTGATAG+TGG + chr8.2:62831827-62831846 MS.gene016706:CDS 35.0%
!! TTCAAATGCTTTGGAAAGTC+AGG + chr8.2:62833419-62833438 MS.gene016706:CDS 35.0%
!!! CACTCCAAGATGTTAGTTTT+GGG + chr8.2:62831991-62832010 MS.gene016706:intron 35.0%
AAATCTATTATCGGGCCACT+CGG + chr8.2:62831964-62831983 MS.gene016706:intron 40.0%
AACAACTAGCAAGCAAGCTT+TGG - chr8.2:62832263-62832282 None:intergenic 40.0%
AACTAGCACTGCTGATATGT+TGG + chr8.2:62834538-62834557 MS.gene016706:CDS 40.0%
ACACTTCCTACCTCTCTTAA+TGG - chr8.2:62833129-62833148 None:intergenic 40.0%
ACGACAATGTGTGAAATTGG+GGG + chr8.2:62833833-62833852 MS.gene016706:intron 40.0%
AGAACTATCCCAGTAGTCAT+TGG - chr8.2:62833340-62833359 None:intergenic 40.0%
AGTCCTCCCATTCAAAAATC+CGG + chr8.2:62833609-62833628 MS.gene016706:intron 40.0%
ATCTTGATAGAGCAAGAGGA+TGG - chr8.2:62833210-62833229 None:intergenic 40.0%
CAAGCTACTACATCATCTAG+TGG + chr8.2:62833156-62833175 MS.gene016706:CDS 40.0%
CCTTATCTGCATTTGGGAAA+AGG - chr8.2:62834295-62834314 None:intergenic 40.0%
GAACAAGAAGAACCATGCTT+AGG - chr8.2:62833514-62833533 None:intergenic 40.0%
GGAAGAGAAGAGGGTAAAAA+TGG + chr8.2:62832497-62832516 MS.gene016706:intron 40.0%
GGAGAGAATCTGTGAAAAGA+AGG + chr8.2:62832527-62832546 MS.gene016706:intron 40.0%
TAATCCACCGCTACAAAATC+AGG - chr8.2:62832081-62832100 None:intergenic 40.0%
TACGCCCAAAACTAACATCT+TGG - chr8.2:62831998-62832017 None:intergenic 40.0%
TACTTAGATACGCCTAAGCA+TGG + chr8.2:62833499-62833518 MS.gene016706:intron 40.0%
TAGCTTCACCAATGACTACT+GGG + chr8.2:62833329-62833348 MS.gene016706:CDS 40.0%
TATTAGGCTGGAAGAGAAGA+GGG + chr8.2:62832488-62832507 MS.gene016706:intron 40.0%
TCTTGAGTCCTAACTCCTAA+GGG + chr8.2:62832679-62832698 MS.gene016706:intron 40.0%
TGATGATACTACTTCCCTCT+TGG + chr8.2:62834510-62834529 MS.gene016706:intron 40.0%
TTATTAGGCTGGAAGAGAAG+AGG + chr8.2:62832487-62832506 MS.gene016706:intron 40.0%
TTCTTCCAAGATGGCTACTA+TGG + chr8.2:62834038-62834057 MS.gene016706:CDS 40.0%
TTTGCACCATTAAGAGAGGT+AGG + chr8.2:62833120-62833139 MS.gene016706:CDS 40.0%
! AACAGAGATCTTTTGCCCTT+AGG - chr8.2:62832697-62832716 None:intergenic 40.0%
! AATCCGGATTTTTGAATGGG+AGG - chr8.2:62833615-62833634 None:intergenic 40.0%
! AGAGAGGTAGGAAGTGTAAA+TGG + chr8.2:62833132-62833151 MS.gene016706:CDS 40.0%
! AGGTTTTGCACCATTAAGAG+AGG + chr8.2:62833116-62833135 MS.gene016706:intron 40.0%
! ATCTTTTGCCCTTAGGAGTT+AGG - chr8.2:62832690-62832709 None:intergenic 40.0%
! CAATTTGCTTGAAGAGCTTC+AGG - chr8.2:62833255-62833274 None:intergenic 40.0%
! CCTTTTCCCAAATGCAGATA+AGG + chr8.2:62834292-62834311 MS.gene016706:CDS 40.0%
! GATGGGACAAACCAAGTTTT+TGG - chr8.2:62833999-62834018 None:intergenic 40.0%
! TATGTGCTAGTTTGGATTGG+CGG - chr8.2:62834444-62834463 None:intergenic 40.0%
!! GAAAAGGACCCTTTTTCACA+TGG + chr8.2:62831632-62831651 MS.gene016706:CDS 40.0%
!! TGATTTTGTAGCGGTGGATT+AGG + chr8.2:62832080-62832099 MS.gene016706:intron 40.0%
!!! GATGTTAGTTTTGGGCGTAA+TGG + chr8.2:62831999-62832018 MS.gene016706:intron 40.0%
AAATCGGGGGGATCAAAATC+CGG - chr8.2:62833631-62833650 None:intergenic 45.0%
AGCATTGCAGAGAGGGTAAA+AGG + chr8.2:62834135-62834154 MS.gene016706:intron 45.0%
AGCTAGGCAGACTCAAATGA+TGG - chr8.2:62834017-62834036 None:intergenic 45.0%
CAGTAGTCATTGGTGAAGCT+AGG - chr8.2:62833330-62833349 None:intergenic 45.0%
CTAGCTTCACCAATGACTAC+TGG + chr8.2:62833328-62833347 MS.gene016706:CDS 45.0%
CTTCTCCATAGTAGCCATCT+TGG - chr8.2:62834046-62834065 None:intergenic 45.0%
GCAATTGGGAGTGACTTGAA+TGG + chr8.2:62832348-62832367 MS.gene016706:intron 45.0%
GCTAGGCAGACTCAAATGAT+GGG - chr8.2:62834016-62834035 None:intergenic 45.0%
GTCTTGAGTCCTAACTCCTA+AGG + chr8.2:62832678-62832697 MS.gene016706:intron 45.0%
TCTTCAAGAGAAGCTTGGGA+GGG + chr8.2:62832718-62832737 MS.gene016706:intron 45.0%
TGGCATCTTGATAGAGCAAG+AGG - chr8.2:62833214-62833233 None:intergenic 45.0%
TTCTTCAAGAGAAGCTTGGG+AGG + chr8.2:62832717-62832736 MS.gene016706:intron 45.0%
! AAGACCTGATTTTGTAGCGG+TGG + chr8.2:62832074-62832093 MS.gene016706:intron 45.0%
! ACTAGCAAGCAAGCTTTGGT+TGG - chr8.2:62832259-62832278 None:intergenic 45.0%
ACCCTCTCTGCAATGCTTCT+AGG - chr8.2:62834132-62834151 None:intergenic 50.0%
AGCTTGGGAGGGTCTTTGAT+TGG + chr8.2:62832729-62832748 MS.gene016706:intron 50.0%
ATCTTGGAGTGTGATCCGAG+TGG - chr8.2:62831982-62832001 None:intergenic 50.0%
CCCTCTCTGCAATGCTTCTA+GGG - chr8.2:62834131-62834150 None:intergenic 50.0%
GCCATCTTGGAAGAAGAGCT+AGG - chr8.2:62834033-62834052 None:intergenic 50.0%
! GCCTAGCTCTTCTTCCAAGA+TGG + chr8.2:62834029-62834048 MS.gene016706:CDS 50.0%
! GTGAGTGGCAAAGCCTCTTT+TGG - chr8.2:62834109-62834128 None:intergenic 50.0%
!! ACCCTAGAAGCATTGCAGAG+AGG + chr8.2:62834127-62834146 MS.gene016706:CDS 50.0%
!! AGTGCTAGTTTGCTGCCAAG+AGG - chr8.2:62834528-62834547 None:intergenic 50.0%
!! CCCTAGAAGCATTGCAGAGA+GGG + chr8.2:62834128-62834147 MS.gene016706:CDS 50.0%
!! GTGCTAGTTTGCTGCCAAGA+GGG - chr8.2:62834527-62834546 None:intergenic 50.0%
!! TGCAATGCTTCTAGGGTGAG+TGG - chr8.2:62834124-62834143 None:intergenic 50.0%
AACATTACAGCGTGCCACCG+TGG - chr8.2:62834413-62834432 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 62831584 62834604 62831584 ID=MS.gene016706
chr8.2 mRNA 62831584 62834604 62831584 ID=MS.gene016706.t1;Parent=MS.gene016706
chr8.2 exon 62831584 62831848 62831584 ID=MS.gene016706.t1.exon1;Parent=MS.gene016706.t1
chr8.2 CDS 62831584 62831848 62831584 ID=cds.MS.gene016706.t1;Parent=MS.gene016706.t1
chr8.2 exon 62833118 62833440 62833118 ID=MS.gene016706.t1.exon2;Parent=MS.gene016706.t1
chr8.2 CDS 62833118 62833440 62833118 ID=cds.MS.gene016706.t1;Parent=MS.gene016706.t1
chr8.2 exon 62833979 62834149 62833979 ID=MS.gene016706.t1.exon3;Parent=MS.gene016706.t1
chr8.2 CDS 62833979 62834149 62833979 ID=cds.MS.gene016706.t1;Parent=MS.gene016706.t1
chr8.2 exon 62834248 62834313 62834248 ID=MS.gene016706.t1.exon4;Parent=MS.gene016706.t1
chr8.2 CDS 62834248 62834313 62834248 ID=cds.MS.gene016706.t1;Parent=MS.gene016706.t1
chr8.2 exon 62834536 62834604 62834536 ID=MS.gene016706.t1.exon5;Parent=MS.gene016706.t1
chr8.2 CDS 62834536 62834604 62834536 ID=cds.MS.gene016706.t1;Parent=MS.gene016706.t1
Gene Sequence

>MS.gene016706

ATGGAAACCATGTTTACCAATTCTGAATCTTTGTCAGTGAAACAAGAAGAAAAGGACCCTTTTTCACATGGAATACAATACAATGATTACTCTTATGGATCTCAAAATCAGATAAATTACCAAACTCAACATAATCAAGGATTTCCAAATGGTTCTTTAGGTGTTGAAGGCAATGTTTTTGATGGTTCTTCTAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCTCCTGCTGAGTTTTTCTCCAATTATTCGGTTGATAGTGGTATGCTTTTTTTATCTTACTTGGTAATATCTATTATGGAATATCCTTTTGTGTAATTGTTAGTGCTTTCATTTTTTGCTACATTTCTTTTTTGATAATGCTTGGTATCAAGCTCAAATCTATTATCGGGCCACTCGGATCACACTCCAAGATGTTAGTTTTGGGCGTAATGGTGTTGTGTTAAGAATACCATATTTGATGAGATAAGACCTAACCGTAAAAGAAAAGACCTGATTTTGTAGCGGTGGATTAGGATCAACTAAAAATTTAAGAGGATGTAACTGAAATTTGTGATTTTCTTTTTCTAAGAAAAGTAATTTAGTCATCTAAGAAAAGTAATTTTGTAGGAGTGGATAATACCTGTTCTTATTTTTTATGGAAATTTTAAAATCCATGATCAATATTGACCAACCAAAGCTTGCTTGCTAGTTGTTAACTAGGTTAAAGTCAAGTCAAGTCAGATCCCTATTTTGTGCAGTATTATTGATAATATAGTAAAGCAATTGGGAGTGACTTGAATGGAATATAAGATCTGTTTGCTGACAATTTCCTTGCTAAGAGAGTTGACTATTTTTTTTAAAATAATTTTCAAGAAATTAATTTCCTCCTGATGAATAGACAATTAATTATCTTGGACATTATTAGGCTGGAAGAGAAGAGGGTAAAAATGGGATATTAGGAGAGAATCTGTGAAAAGAAGGCATAAAAATTTCATATGCAAATACTAAAATTTAGTTTAGAAGGATTTTTTTTGTTTGAAATATATGCATATTTTTCTAGGTAGTATATTCTTTTAATGAAAGTTTTTATATTTACTTAACACACGATGGTCTTGAGTCCTAACTCCTAAGGGCAAAAGATCTCTGTTTTCTTCAAGAGAAGCTTGGGAGGGTCTTTGATTGGAGAAAATAGATTAAAAAAAAAAATCTCCCTTAACAATACATGTCTTGTTTGGATAAACAACTTAATTAATACCTTATGCATAAACTACTTTTACAACAAAAGATAAAATAATGTTAAATTATTTTTATATAAGAAATAAGTTGATTTTATAAACTATCCTGGAGAGCTTATAAAAATAAGTTGAAAATAGTTTAAAGATATTTCATATGTTGTTTGTTTCTATATGCTTTCTTAAAATGTCTCGCAAATACTTATGTCAATAGAAAAATCAAATAATTTAATTCAAATATGTCTAAGTCTTTCTACTACCATTGAAAAAGTATATTTTACTTTGTAGGGTTCTAAAAAAACTTGTACTAATGGCAGGTTTTGCACCATTAAGAGAGGTAGGAAGTGTAAATGGACAAGCTACTACATCATCTAGTGGATATGGTACTTTGAACTTCTCATCTAGACCATCCTCTTGCTCTATCAAGATGCCACAAATTGTTGAAAATGAACCTGAAGCTCTTCAAGCAAATTGTATTAAAAGTAGAAACATGGGAAATGATAATGGTATCACAAAATGTTACATGCCTAGCTTCACCAATGACTACTGGGATAGTTCTGCTTCTACATTCAGTGCTCCAAAAAATGCTACTAATAAGGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAAGTCAGGTACATAAGAGAATTGTGTGAATTTCCATTTTAACCAATTGGCCTTTTGTAAAGATTATACTTAGATACGCCTAAGCATGGTTCTTCTTGTTCCTCTCACAAAGAGACGATTAAATTTTAGAATTAAATGCATTTTTGATCCCACTATTTTACCTAAAACAAGATTTTAGTCCTCCCATTCAAAAATCCGGATTTTGATCCCCCCGATTTCACAATTTTTTGCAATTTTGATCCAAAACCAGAATTTTTACTCAAAAAGTTGTGTCTTTTGCCCGAATTTTGAATCTAAAGAGAGTATACAAAACATTATCACTTTCGAGGAGTAAATATCACCGTTTTCTGAGACAAAAGTTGCCAATTTTGGGTAAACAATATGGATTGGGACCAAAATTACGACAATGTGTGAAATTGGGGGACCAAAAACCAAAATTTTGAATCTCATTTTGCTATTTTTTAGTAGAGAATAGTAGGACCAATGTTTGTAGCATTGTACCTTAAACTTTTATCATTGTTGATTAGTGAAAATTTGTGTTGCCAGAATGTAGATTTTGGATACCAAAAACTTGGTTTGTCCCATCATTTGAGTCTGCCTAGCTCTTCTTCCAAGATGGCTACTATGGAGAAGTTTTTACACGTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTAAAAGGCTAACCTTTCTATAATCACAAATTTCATGAATACATTTTGTTGCAATTTAATGAGCTTGTTCATTTATTTTTTTGATTTGCACATTGCAGGAAAGAAGAATAAGAATTAGTGCAAGAATAAAAAAACTTCAAAACCTTTTCCCAAATGCAGATAAGGTAATATACTGCATGTTTGAATTGATAGCGAGTTTAGCAAAATCACGATGACACCCTGCTTTTTTGTTGTGTTTTAAAGTGTAACTTTTACTAAAACCACGGTGGCACGCTGTAATGTTATCACACACCGCCAATCCAAACTAGCACATAACACATCATATTGTTGGGTGAAGTTTTTATATGCAATTTGTTGACTTGATGATACTACTTCCCTCTTGGCAGCAAACTAGCACTGCTGATATGTTGGATGAAGCAGTTGAGTACATTAAAGAGCTCAGGAAACAACTTAAG
Protein sequence

>MS.gene016706.t1

METMFTNSESLSVKQEEKDPFSHGIQYNDYSYGSQNQINYQTQHNQGFPNGSLGVEGNVFDGSSNNCSNLIRQKSSPAEFFSNYSVDSGFAPLREVGSVNGQATTSSSGYGTLNFSSRPSSCSIKMPQIVENEPEALQANCIKSRNMGNDNGITKCYMPSFTNDYWDSSASTFSAPKNATNKGEFMFSTSNALESQNVDFGYQKLGLSHHLSLPSSSSKMATMEKFLHVQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQNLFPNADKQTSTADMLDEAVEYIKELRKQLK