AlfalfaGEDB | MS.gene016773

M. sativa cultivar XinJiangDaYe / MS.gene016773

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016773.t1	KEH28325.1	85.6	201	8	1	34	213	56	256	6.10E-88	334

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016773.t1	Q6UD73	62.0	205	49	6	34	213	345	545	1.8e-56	220.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016773.t1	G7K7M4	85.6	201	8	1	34	213	315	515	4.4e-88	334.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016773.t1	MTR_5g086040	84.737	190	8	1	45	213	67	256	2.30e-111	323
MS.gene016773.t1	MTR_5g086040	84.737	190	8	1	45	213	174	363	8.35e-110	323
MS.gene016773.t1	MTR_5g086040	84.737	190	8	1	45	213	326	515	9.61e-108	323
MS.gene016773.t1	MTR_5g086040	84.181	177	7	1	45	200	364	540	9.31e-98	296
MS.gene016773.t1	MTR_5g086030	68.367	196	36	3	34	205	363	556	3.16e-79	250
MS.gene016773.t1	MTR_5g086540	60.465	215	48	3	34	213	297	509	1.29e-77	245
MS.gene016773.t1	MTR_3g080050	64.078	206	46	5	34	214	345	547	2.46e-74	237
MS.gene016773.t1	MTR_5g086080	56.164	219	56	3	34	214	169	385	7.35e-72	226
MS.gene016773.t1	MTR_2g024290	61.650	206	50	6	34	214	341	542	1.27e-71	230
MS.gene016773.t1	MTR_5g086130	61.951	205	49	6	34	213	345	545	1.78e-70	227

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016773.t1	AT3G21630	62.755	196	45	4	34	205	345	536	2.02e-69	224
MS.gene016773.t1	AT1G51940	47.514	181	68	5	34	188	364	543	6.91e-41	148
MS.gene016773.t1	AT5G02800	40.984	183	80	5	32	187	96	277	3.68e-37	134
MS.gene016773.t1	AT5G18610	40.704	199	87	7	36	205	110	306	1.12e-36	135
MS.gene016773.t1	AT5G18610	40.704	199	87	7	36	205	110	306	1.12e-36	135
MS.gene016773.t1	AT5G18610	40.704	199	87	7	36	205	110	306	1.12e-36	135
MS.gene016773.t1	AT1G20650	41.081	185	81	5	30	187	98	281	1.45e-35	130
MS.gene016773.t1	AT3G24550	44.505	182	73	6	32	187	301	480	2.46e-35	133
MS.gene016773.t1	AT1G24030	39.796	196	84	6	35	198	87	280	4.64e-35	127
MS.gene016773.t1	AT1G76370	36.752	234	113	6	30	229	95	327	6.57e-35	128

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Find 57 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGCCGTAATCAATGA+TGG	0.575107	5.2:+73250227	MS.gene016773:CDS
AAAGTAGATGTCTACGCCTT+TGG	0.441237	5.2:+73250176	MS.gene016773:CDS
AACCTTTGTCATGGTCTACA+AGG	0.522319	5.2:+73249693	MS.gene016773:CDS
AACTTCATCAACTATAGTTG+CGG	0.559590	5.2:+73249974	MS.gene016773:CDS
AAGGCGTAGACATCTACTTT+CGG	0.511570	5.2:-73250173	None:intergenic
AATAAAAGGCCTTGTGGCTG+TGG	0.519442	5.2:+73250256	MS.gene016773:CDS
AATGATGGTCCTCAAATAAA+AGG	0.269847	5.2:+73250242	MS.gene016773:CDS
ACCACAATCGATCTCATACT+TGG	0.441882	5.2:-73250702	None:intergenic
ACCATGTAGGTAGGTTTGAT+TGG	0.430645	5.2:+73249496	MS.gene016773:intron
ACGAGTGGAGCAAAAGCCCT+TGG	0.543384	5.2:+73247583	MS.gene016773:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAATTGATCATACTC+TGG	-	chr5.2:73250023-73250042	None:intergenic	30.0%
AAATGTCTATATCTAAGCCA+AGG	+	chr5.2:73248505-73248524	MS.gene016773:intron	30.0%
AACTTCATCAACTATAGTTG+CGG	+	chr5.2:73249974-73249993	MS.gene016773:CDS	30.0%
AAGGTTAGAATTTATACCTC+GGG	-	chr5.2:73248315-73248334	None:intergenic	30.0%
AATGATGGTCCTCAAATAAA+AGG	+	chr5.2:73250242-73250261	MS.gene016773:CDS	30.0%
ACATGAGATGAAAATAGCAT+TGG	-	chr5.2:73248556-73248575	None:intergenic	30.0%
AGTCAATTAGGAATTGGTTA+AGG	+	chr5.2:73247763-73247782	MS.gene016773:intron	30.0%
ATCTGCACAGTTGAAAAAAA+TGG	-	chr5.2:73250636-73250655	None:intergenic	30.0%
ATGAATATATTCAAGACCTC+TGG	-	chr5.2:73249741-73249760	None:intergenic	30.0%
CGTATCTGTAAATAAGGAAA+TGG	-	chr5.2:73250130-73250149	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	73247576	73250754	73247576	ID=MS.gene016773
chr5.2	mRNA	73247576	73250754	73247576	ID=MS.gene016773.t1;Parent=MS.gene016773
chr5.2	exon	73247576	73247674	73247576	ID=MS.gene016773.t1.exon1;Parent=MS.gene016773.t1
chr5.2	CDS	73247576	73247674	73247576	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73249230	73249319	73249230	ID=MS.gene016773.t1.exon2;Parent=MS.gene016773.t1
chr5.2	CDS	73249230	73249319	73249230	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73249505	73249598	73249505	ID=MS.gene016773.t1.exon3;Parent=MS.gene016773.t1
chr5.2	CDS	73249505	73249598	73249505	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73249687	73249775	73249687	ID=MS.gene016773.t1.exon4;Parent=MS.gene016773.t1
chr5.2	CDS	73249687	73249775	73249687	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73249930	73250024	73249930	ID=MS.gene016773.t1.exon5;Parent=MS.gene016773.t1
chr5.2	CDS	73249930	73250024	73249930	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73250145	73250277	73250145	ID=MS.gene016773.t1.exon6;Parent=MS.gene016773.t1
chr5.2	CDS	73250145	73250277	73250145	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73250464	73250503	73250464	ID=MS.gene016773.t1.exon7;Parent=MS.gene016773.t1
chr5.2	CDS	73250464	73250503	73250464	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1
chr5.2	exon	73250654	73250754	73250654	ID=MS.gene016773.t1.exon8;Parent=MS.gene016773.t1
chr5.2	CDS	73250654	73250754	73250654	ID=cds.MS.gene016773.t1;Parent=MS.gene016773.t1

Gene Sequence

>MS.gene016773

ATGCGCAACGAGTGGAGCAAAAGCCCTTGGCCTTTCGGTCCATTCGCTAGTTGTGTTACAACTAGGAGGGATAGACGGTGTGGCGGCGACGGTTCAGGGGTAAACTTGTAATCACGTCTACAATATTTAAACAAATTTATGTAATATGAAATCGTAAGCATTGAATAATAGATAGTTAGAGTTAGTTAGTCAATTAGGAATTGGTTAAGGGTTAGTTACTCAATTAGTTGTGCAATTGGATTCTATAAATGAGACTATTGTATACATAATTCAATTGACTATTTTTAATCAATCTATATGATTCCTTAATGAGCGTTTACCTCACTAGTATTCCTATGCTCTCTTACTCTAGTATGAGTATGATGTATATGGCCCTATCATCACATGATTTTTCACAGAACAATCAGCTGAACTCTGTAATCAATCATTGTGTTCTTGAGCGTTTATTTATTTGATTACTTTAGAGCTGGGTTTGCTATTCAAACAATCTTTTAGAGTTATGCTTGTAAAGTTGAGTCTCCAATTTCCTGAGTTTAAGAAGGCTCCCCTGATAATTTCATTTTTTCTTTCTCAAAGCAAGAGTGGTATCTGCTGGGTCTTTACCAAAGCTTAACTAATCTGCATCATGATCTATGCTTACAGAAAAGAATTTAGCTGCAAATTTTCAATTAGTACTTGCATCACAATTTTTGTCCTTTCATTTGACAGATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGGTATAAATTCTAACCTTATTCTCCATGTTAATGTACATCAAGTTTTAATTTTTTTTTTTTTTCTTTTCATTTTCAGAAAAAACATTAGAATAAATTTTCATTTTCCCTTGCAGCAGAGTAGGTTTGATCTTCTTACTCCCTCAAAAAGTTGGTGATTTGATTATTGTCTTCGCTGAAGTTTAATATCAAATGTCTATATCTAAGCCAAGGTAAAGATATCATCAAAGTTATAATGCCAATGCTATTTTCATCTCATGTATTATAGTTCTTATTGTGTATCGTTCTATTTTGGACATGACCCTCATATTGAATCTTGTTTTTTCAAAGGAATTCCAATGAGTTGTTAGCGGCCAACACTCGAGGGGATTTAGTCCACATCGGATAGATAGGATTCTTGAGAAGAGTTTATAAAGAGGAGGCACTCCTCACTGTACAAGCCGGTTTTGTATGGATGAGTTAGGCCTCGATATTCGTTACATGAGTTACTTTTTATTCCAACAATTACTTCCAAAACATAATGTAGTTAGCCACTATTTTTTGTGAACTTTGCAAGCTCAGCCACTTTTCTGTCATTTGACTCAGGACTTTAATCTTAAATTATTTTGAGGTTTGCATATCATATATTAGCTCATAATTGAGCTACATCACTTTTACCTAAAAATATTATATTTTTATTAATAATGTATCTTACAATTCTAAATAAAATTCAATTTAAGATTTCGAAAATAGTTCTTCTGATTCACGTTTGGAATCTCAATTTGATAACAATGTGTATGTGTACTTCAAATACAGTTTTCATATTCTTTCTATTTTATTACAACACACGTTGCACATGAATACAATTGTTCCTACTATATATCGTTTCAGAATGTTTATATTTTGGTTCAAAATAAGTCCTTTCCAATTGCACAGAAAGCTGCCATCAAGAAGATGAAGATGAAGGCAACAAAAGAATTTTATGCTGAATTGAAAGTCTTGACTCTTGTTCATCACTTGAACCTGGTAATTAGTTTATCTGAATATTACTAAATATCATTGTTGTTTTAGAAACTAGAATTGAAAAGAAAAAGTCCTAATCATGTGAGACTGTTTAATGTTTGCTCTATTCATGAATTATATTAGACTGTTTTATATATACTATTATCTTTTATTTTCTTATTTTTATCAACCTATTTGTGACCATGTAGGTAGGTTTGATTGGATATTGTGCTGAAGGTTCTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCACGATTCAGGTGAGATAAACTCAACGAAAAATATATATGACGCACCGATGTGAATATGTCATTGTAAAGATTCTGATCAAGTAAAAAATGTTACCAGAAAGAGAACCTTTGTCATGGTCTACAAGGCTGCAAATTGCGCTGGATTCAGCCAGAGGTCTTGAATATATTCATGAACATACAGTACCTGTATATATCCATCGCGATATAAAATCAGAAAATATTTTATTAGACAAAAGCTTTTGAGCAAAGGTAGAAGTCGTATTACAAATTTTTTATTTTTTTACTGTTTTTCTTACTGGGATTATGATGTGAATTCTTCATTATTCCTTTTGCACCGCAGGTTGCAGATTTTGGATTATCCAAGCTTGCTGATGTTGGAAATTCAACTTCATCAACTATAGTTGCGGAGGGTACATTCGGTTACATGCCACCAGAGTATGATCAATTCTCTTTCTCTTCAATGGATTGCACTTTGCCTTAAGATATAGAATTTGAGAAAAAATGAGTTCATTTTTCATAAGTGTAAGATTGATGATTCCATTTCCTTATTTACAGATACGCATGTGGCAGTGTCTCTTCTTCTCCGAAAGTAGATGTCTACGCCTTTGGTGTTGTTCTGTACGAACTTATTTCTGCTAAAGCAGCCGTAATCAATGATGGTCCTCAAATAAAAGGCCTTGTGGCTGTGGTGATTCTCCTTTATTCTTTTCAATTGGCATCCTAATAATTTTACATAAAGATAAATGATGTTTGTTAAGACTGTATTCCAAATCACTATTTATATTACTAGGATATTTACTTGCATAAATAATTAAGCATAATGATACATTTTCCTTTCTTGCTTGTTAAGTTTTTTTGTTAATTTATTTGGCAGTTTGATGAAGTGTTTGGCTATGAGCAAGATCCAACAGAAGGTATAAAAAATCTGGTGGATCCTAGACTTGGAGATAACTACTCAATTGATTCAGTTTGCAAGGTACCAGTTGTGTAAGAAATTTTATTTTATTTTGATGATAACGTTTTCAACATTAATAAAGGTTTGGCCATTTTTTTCAACTGTGCAGATGGCACAACTAGCAAAAGCATGTACAATGAGGGATCCACGACTACGTCCAAGTATGAGATCGATTGTGGTTGCTCTTATGACACTAACTTCTACAACTGA

Protein sequence

>MS.gene016773.t1

MRNEWSKSPWPFGPFASCVTTRRDRRCGGDGSGKAAIKKMKMKATKEFYAELKVLTLVHHLNLVGLIGYCAEGSLFLVYEYIDNGNLSQNLHDSEREPLSWSTRLQIALDSARGLEYIHEHTVPVADFGLSKLADVGNSTSSTIVAEGTFGYMPPEYACGSVSSSPKVDVYAFGVVLYELISAKAAVINDGPQIKGLVAVFDEVFGYEQDPTEDGTTSKSMYNEGSTTTSKYEIDCGCSYDTNFYN