Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016821.t1 | XP_022729160.1 | 46.8 | 233 | 36 | 3 | 126 | 270 | 268 | 500 | 1.10E-42 | 183.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016821.t1 | Q39238 | 78.3 | 83 | 17 | 1 | 188 | 269 | 575 | 657 | 9.0e-33 | 142.1 |
| MS.gene016821.t1 | Q39238 | 58.8 | 51 | 19 | 1 | 126 | 176 | 262 | 310 | 1.2e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016821.t1 | A0A1D6GH56 | 40.9 | 232 | 49 | 3 | 126 | 269 | 14 | 245 | 1.7e-37 | 166.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016821.t1 | MTR_5g086960 | 86.747 | 83 | 11 | 0 | 188 | 270 | 100 | 182 | 1.93e-48 | 159 |
| MS.gene016821.t1 | MTR_5g086940 | 87.952 | 83 | 10 | 0 | 188 | 270 | 229 | 311 | 2.12e-46 | 157 |
| MS.gene016821.t1 | MTR_5g086790 | 90.244 | 82 | 8 | 0 | 188 | 269 | 558 | 639 | 4.64e-46 | 164 |
| MS.gene016821.t1 | MTR_5g086790 | 72.222 | 54 | 13 | 1 | 126 | 179 | 246 | 297 | 5.46e-15 | 75.1 |
| MS.gene016821.t1 | MTR_5g087050 | 89.024 | 82 | 9 | 0 | 188 | 269 | 490 | 571 | 8.10e-46 | 162 |
| MS.gene016821.t1 | MTR_5g087050 | 72.549 | 51 | 12 | 1 | 126 | 176 | 178 | 226 | 2.14e-14 | 73.2 |
| MS.gene016821.t1 | MTR_5g087240 | 87.805 | 82 | 10 | 0 | 188 | 269 | 502 | 583 | 2.30e-44 | 159 |
| MS.gene016821.t1 | MTR_5g087240 | 72.549 | 51 | 12 | 1 | 126 | 176 | 189 | 237 | 2.43e-14 | 73.2 |
| MS.gene016821.t1 | MTR_5g087250 | 74.390 | 82 | 21 | 0 | 188 | 269 | 395 | 476 | 5.79e-36 | 134 |
| MS.gene016821.t1 | MTR_5g087250 | 51.429 | 70 | 32 | 2 | 60 | 127 | 4 | 73 | 9.83e-12 | 65.1 |
| MS.gene016821.t1 | MTR_5g086970 | 72.289 | 83 | 23 | 0 | 188 | 270 | 327 | 409 | 1.19e-35 | 132 |
| MS.gene016821.t1 | MTR_3g045010 | 79.487 | 39 | 8 | 0 | 188 | 226 | 146 | 184 | 2.58e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016821.t1 | AT5G20930 | 78.313 | 83 | 17 | 1 | 188 | 269 | 575 | 657 | 1.19e-40 | 149 |
| MS.gene016821.t1 | AT5G20930 | 57.407 | 54 | 21 | 1 | 126 | 179 | 262 | 313 | 9.67e-11 | 62.4 |
Find 67 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGATGGCTTGTTGTTAA+AGG | 0.238805 | 5.2:+73904025 | MS.gene016821:CDS |
| TCGTGAAGACAAAATTATTA+AGG | 0.307872 | 5.2:+73906498 | MS.gene016821:CDS |
| TTGGCTAAACTTTGTATAGA+TGG | 0.318171 | 5.2:+73903219 | MS.gene016821:CDS |
| GAAGTATTCTCTCTTGTGTT+TGG | 0.362711 | 5.2:-73906477 | None:intergenic |
| TTGCTGAGCTCAAAGCATTC+AGG | 0.362890 | 5.2:-73906171 | None:intergenic |
| AGCCAAGTTGACTCTGAGTT+CGG | 0.366451 | 5.2:-73903202 | None:intergenic |
| TAGCTTTGAGCCTGCGTTCA+AGG | 0.367363 | 5.2:-73902978 | None:intergenic |
| CAAAATTATTAAGGAACATA+AGG | 0.371306 | 5.2:+73906507 | MS.gene016821:CDS |
| CTCGGGAGGGGCTGAAGAAT+TGG | 0.373919 | 5.2:+73903286 | MS.gene016821:CDS |
| CTCTTCGGCAGACGTCCTTT+CGG | 0.387682 | 5.2:+73906448 | MS.gene016821:CDS |
| TTGGAAATGTTGGTTTAGTC+AGG | 0.406517 | 5.2:+73903895 | MS.gene016821:CDS |
| AACAAGATAACTTCTGATTC+CGG | 0.419760 | 5.2:+73903072 | MS.gene016821:CDS |
| GCCAAGTTGACTCTGAGTTC+GGG | 0.422761 | 5.2:-73903201 | None:intergenic |
| GATATCAGTTTCAAAGGCTA+TGG | 0.441318 | 5.2:+73903830 | MS.gene016821:intron |
| CAGGTTGATGTCTGGTCTGC+TGG | 0.447095 | 5.2:+73906406 | MS.gene016821:intron |
| CGACAGGATTCGTTGAGACT+TGG | 0.461214 | 5.2:+73903876 | MS.gene016821:CDS |
| AATAATCATGGAAGCAAGGT+TGG | 0.464882 | 5.2:+73902951 | None:intergenic |
| TCATAGGGGCTGGAACGTAT+TGG | 0.470439 | 5.2:+73906011 | MS.gene016821:intron |
| TTAACTGAGACTTGGGAAGA+TGG | 0.476379 | 5.2:+73904011 | MS.gene016821:CDS |
| TTGTATTATCAAATGCTCTT+CGG | 0.476620 | 5.2:+73906433 | MS.gene016821:CDS |
| CTCTGGTTATCCAACCGACT+GGG | 0.497696 | 5.2:-73903146 | None:intergenic |
| AAGTTATCTTGTTCTCCGAC+TGG | 0.498529 | 5.2:-73903062 | None:intergenic |
| CCAACCGACTGGGTCTTCAC+TGG | 0.500785 | 5.2:-73903136 | None:intergenic |
| GTGGAAAACAGGTTGATGTC+TGG | 0.502498 | 5.2:+73906398 | MS.gene016821:intron |
| GCTCTGGTTATCCAACCGAC+TGG | 0.510402 | 5.2:-73903147 | None:intergenic |
| GCCCGAACTCAGAGTCAACT+TGG | 0.513735 | 5.2:+73903200 | MS.gene016821:CDS |
| TCGTTGAGACTTGGAAATGT+TGG | 0.515084 | 5.2:+73903885 | MS.gene016821:CDS |
| TTGTATTTATTGTGCACCAA+TGG | 0.515231 | 5.2:+73904095 | MS.gene016821:CDS |
| TTTGCTGATATCAGTTTCAA+AGG | 0.516883 | 5.2:+73903824 | MS.gene016821:intron |
| AACTGTCTTAACTGAGACTT+GGG | 0.517822 | 5.2:+73904004 | MS.gene016821:CDS |
| TGAACGCAGGCTCAAAGCTA+TGG | 0.517858 | 5.2:+73902981 | MS.gene016821:CDS |
| GAACTGTCTTAACTGAGACT+TGG | 0.527517 | 5.2:+73904003 | MS.gene016821:CDS |
| AGAAAGGCTAAAAGTACGAC+AGG | 0.531383 | 5.2:+73903860 | MS.gene016821:CDS |
| TACTGTTTCTAATGAGGCAA+AGG | 0.536433 | 5.2:+73906549 | MS.gene016821:CDS |
| ATAACTTCTGATTCCGGTGA+GGG | 0.536652 | 5.2:+73903078 | MS.gene016821:CDS |
| ACAGAAATACACTTCCGCTC+TGG | 0.539106 | 5.2:-73903163 | None:intergenic |
| ATGACCTTGGATGATATAAG+AGG | 0.545308 | 5.2:-73906198 | None:intergenic |
| GGTTGCTTAAACGCTACGGC+GGG | 0.565825 | 5.2:+73903307 | MS.gene016821:CDS |
| AGTTATCTTGTTCTCCGACT+GGG | 0.567495 | 5.2:-73903061 | None:intergenic |
| AAAGTTCGATCCTCCCTCAC+CGG | 0.571306 | 5.2:-73903091 | None:intergenic |
| GAAGAATAATCATGGAAGCA+AGG | 0.576190 | 5.2:+73902947 | None:intergenic |
| ATATCAGTTTCAAAGGCTAT+GGG | 0.576327 | 5.2:+73903831 | MS.gene016821:intron |
| TAAATACAAGGGGAAGAAAG+AGG | 0.579480 | 5.2:-73904081 | None:intergenic |
| AAGACCTACTGTTTCTAATG+AGG | 0.581720 | 5.2:+73906543 | MS.gene016821:CDS |
| CCAGTGAAGACCCAGTCGGT+TGG | 0.584564 | 5.2:+73903136 | MS.gene016821:CDS |
| ATTGGTGCACAATAAATACA+AGG | 0.589155 | 5.2:-73904093 | None:intergenic |
| AAGAGGTTAGACATACAAGC+TGG | 0.589820 | 5.2:-73904064 | None:intergenic |
| AGGAAGTCGAAGTTATAACT+CGG | 0.591644 | 5.2:+73903268 | MS.gene016821:CDS |
| TTTCAAGGCGTTGATTGAAG+AGG | 0.598405 | 5.2:+73903248 | MS.gene016821:CDS |
| GACGCCTCTTATATCATCCA+AGG | 0.602777 | 5.2:+73906194 | MS.gene016821:CDS |
| AATTGGTTGCTTAAACGCTA+CGG | 0.604355 | 5.2:+73903303 | MS.gene016821:CDS |
| GGTTGGATGACCTTGAACGC+AGG | 0.607315 | 5.2:+73902968 | MS.gene016821:CDS |
| GTCGAAGTTATAACTCGGGA+GGG | 0.611393 | 5.2:+73903273 | MS.gene016821:CDS |
| GGAAGTCGAAGTTATAACTC+GGG | 0.615447 | 5.2:+73903269 | MS.gene016821:CDS |
| TGTGTTTGGTCATGTCCGAA+AGG | 0.620138 | 5.2:-73906463 | None:intergenic |
| ACTTCTGATTCCGGTGAGGG+AGG | 0.626793 | 5.2:+73903081 | MS.gene016821:CDS |
| AGTCGAAGTTATAACTCGGG+AGG | 0.628086 | 5.2:+73903272 | MS.gene016821:CDS |
| CTGAGCTCAAAGCATTCAGG+AGG | 0.645161 | 5.2:-73906168 | None:intergenic |
| TTTGCCTCATTAGAAACAGT+AGG | 0.648415 | 5.2:-73906547 | None:intergenic |
| GTCAGCAAAAGTCTCCCAGT+CGG | 0.652082 | 5.2:+73903047 | MS.gene016821:CDS |
| TGGTGCACAATAAATACAAG+GGG | 0.655718 | 5.2:-73904091 | None:intergenic |
| TTGGTGCACAATAAATACAA+GGG | 0.656968 | 5.2:-73904092 | None:intergenic |
| TCGAAGTTATAACTCGGGAG+GGG | 0.657194 | 5.2:+73903274 | MS.gene016821:CDS |
| TGGTTGCTTAAACGCTACGG+CGG | 0.689110 | 5.2:+73903306 | MS.gene016821:CDS |
| GATAACTTCTGATTCCGGTG+AGG | 0.689748 | 5.2:+73903077 | MS.gene016821:CDS |
| TTCTCCAGTGAAGACCCAGT+CGG | 0.690838 | 5.2:+73903132 | MS.gene016821:CDS |
| AGTCGGTTGGATAACCAGAG+CGG | 0.767068 | 5.2:+73903149 | MS.gene016821:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATAAATATAATTAAGA+AGG | - | chr5.2:73904167-73904186 | None:intergenic | 10.0% |
| !! | AACAAATAAATTACTAGATT+AGG | - | chr5.2:73905941-73905960 | None:intergenic | 15.0% |
| !! | AAGTCTAAGAAATATTATTA+TGG | - | chr5.2:73904569-73904588 | None:intergenic | 15.0% |
| !! | AAGTTAAGTAGATTATTATT+AGG | + | chr5.2:73903380-73903399 | MS.gene016821:intron | 15.0% |
| !! | AATGTCTTAACTAATTATTA+GGG | + | chr5.2:73903346-73903365 | MS.gene016821:intron | 15.0% |
| !! | ATATAGTTTACAGTTTATTT+AGG | - | chr5.2:73905809-73905828 | None:intergenic | 15.0% |
| !! | ATTAAAATCCTATAATTTGA+TGG | - | chr5.2:73905272-73905291 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATTAATGACCT+TGG | - | chr5.2:73906214-73906233 | None:intergenic | 15.0% |
| !! | TAGATTATTATTAGGATTTA+GGG | + | chr5.2:73903388-73903407 | MS.gene016821:intron | 15.0% |
| !! | TTCCTATGTTAAAATAAAAA+GGG | - | chr5.2:73904621-73904640 | None:intergenic | 15.0% |
| !!! | AAATATTATTATGGTTTTGT+CGG | - | chr5.2:73904560-73904579 | None:intergenic | 15.0% |
| !!! | AAATGAATAGATTTGTTAAT+GGG | - | chr5.2:73905475-73905494 | None:intergenic | 15.0% |
| !! | AAATAAAACGGTACTATATT+TGG | - | chr5.2:73904890-73904909 | None:intergenic | 20.0% |
| !! | AAATATAAGTTATAAACAGG+GGG | + | chr5.2:73905536-73905555 | MS.gene016821:intron | 20.0% |
| !! | AAGTGATCATTTAAGTATTA+AGG | - | chr5.2:73905771-73905790 | None:intergenic | 20.0% |
| !! | ACCAAATATAAGTTATAAAC+AGG | + | chr5.2:73905533-73905552 | MS.gene016821:intron | 20.0% |
| !! | AGATTATTATTAGGATTTAG+GGG | + | chr5.2:73903389-73903408 | MS.gene016821:intron | 20.0% |
| !! | ATAAGCTATAAATAGCTTAT+GGG | + | chr5.2:73905722-73905741 | MS.gene016821:intron | 20.0% |
| !! | CAAAATTATTAAGGAACATA+AGG | + | chr5.2:73906507-73906526 | MS.gene016821:CDS | 20.0% |
| !! | CAAATATAAGTTATAAACAG+GGG | + | chr5.2:73905535-73905554 | MS.gene016821:intron | 20.0% |
| !! | CATTTCTTTAAGCTAAATTA+AGG | - | chr5.2:73904702-73904721 | None:intergenic | 20.0% |
| !! | CCAAATATAAGTTATAAACA+GGG | + | chr5.2:73905534-73905553 | MS.gene016821:intron | 20.0% |
| !! | CTTCCTATGTTAAAATAAAA+AGG | - | chr5.2:73904622-73904641 | None:intergenic | 20.0% |
| !! | GAATGCAGATAAAAATAAAA+CGG | - | chr5.2:73904902-73904921 | None:intergenic | 20.0% |
| !! | GAATGTCTTAACTAATTATT+AGG | + | chr5.2:73903345-73903364 | MS.gene016821:intron | 20.0% |
| !! | GTAGATTATTATTAGGATTT+AGG | + | chr5.2:73903387-73903406 | MS.gene016821:intron | 20.0% |
| !! | TATAAGCTATAAATAGCTTA+TGG | + | chr5.2:73905721-73905740 | MS.gene016821:intron | 20.0% |
| !! | TCCTATGTTAAAATAAAAAG+GGG | - | chr5.2:73904620-73904639 | None:intergenic | 20.0% |
| !!! | AACTATTGATTGGAAATTAA+TGG | - | chr5.2:73904825-73904844 | None:intergenic | 20.0% |
| !!! | AATATTGTCAGGATTTTATT+TGG | + | chr5.2:73904960-73904979 | MS.gene016821:intron | 20.0% |
| !!! | AATGAATAGATTTGTTAATG+GGG | - | chr5.2:73905474-73905493 | None:intergenic | 20.0% |
| !!! | ATTTTGTAATCTTGATTGAA+GGG | + | chr5.2:73905090-73905109 | MS.gene016821:intron | 20.0% |
| !!! | CTTAATTTAGCTTAAAGAAA+TGG | + | chr5.2:73904700-73904719 | MS.gene016821:intron | 20.0% |
| !!! | CTTTTTATTTTAACATAGGA+AGG | + | chr5.2:73904620-73904639 | MS.gene016821:intron | 20.0% |
| !!! | GAAATGAATAGATTTGTTAA+TGG | - | chr5.2:73905476-73905495 | None:intergenic | 20.0% |
| !!! | GAACAATTTCTTGAAATTTT+CGG | - | chr5.2:73903019-73903038 | None:intergenic | 20.0% |
| !!! | GGATTTTAATGCATATTTAT+TGG | + | chr5.2:73905282-73905301 | MS.gene016821:intron | 20.0% |
| !!! | GTTATCTAACTAGTTATTTT+GGG | + | chr5.2:73905630-73905649 | MS.gene016821:intron | 20.0% |
| !!! | TATCATTTGGTTCAAAATAT+TGG | + | chr5.2:73905156-73905175 | MS.gene016821:intron | 20.0% |
| !!! | TATTGATTATCATAGTAAGA+TGG | - | chr5.2:73904353-73904372 | None:intergenic | 20.0% |
| !!! | TGTTATCTAACTAGTTATTT+TGG | + | chr5.2:73905629-73905648 | MS.gene016821:intron | 20.0% |
| !!! | TTTTATTTTGGTTTTCTTAG+TGG | + | chr5.2:73903957-73903976 | MS.gene016821:intron | 20.0% |
| ! | AAAAATATTCACATTTCGTC+TGG | + | chr5.2:73903765-73903784 | MS.gene016821:intron | 25.0% |
| ! | AAAATAATCAACACGAAGAA+AGG | - | chr5.2:73903540-73903559 | None:intergenic | 25.0% |
| ! | AAATGATCACTTATGTCATA+AGG | + | chr5.2:73905779-73905798 | MS.gene016821:intron | 25.0% |
| ! | AAGAACGATTTCAAAATTTC+TGG | - | chr5.2:73903697-73903716 | None:intergenic | 25.0% |
| ! | AATAAGGATAACAGAAGTAA+AGG | - | chr5.2:73903470-73903489 | None:intergenic | 25.0% |
| ! | AATATAAGTTATAAACAGGG+GGG | + | chr5.2:73905537-73905556 | MS.gene016821:intron | 25.0% |
| ! | ACATCAATAATGATGAAACT+AGG | - | chr5.2:73905852-73905871 | None:intergenic | 25.0% |
| ! | ATAAGGATAACAGAAGTAAA+GGG | - | chr5.2:73903469-73903488 | None:intergenic | 25.0% |
| ! | CCCTGTTTATAACTTATATT+TGG | - | chr5.2:73905537-73905556 | None:intergenic | 25.0% |
| ! | GGAGAATTATAACTATTGAT+TGG | - | chr5.2:73904835-73904854 | None:intergenic | 25.0% |
| ! | GTTTAACGACAATTATTATG+CGG | - | chr5.2:73903570-73903589 | None:intergenic | 25.0% |
| ! | TATTCATTTCCATATTCGTA+AGG | + | chr5.2:73905486-73905505 | MS.gene016821:intron | 25.0% |
| ! | TATTCTTGCCATCAAATTAT+AGG | + | chr5.2:73905261-73905280 | MS.gene016821:intron | 25.0% |
| ! | TCGTGAAGACAAAATTATTA+AGG | + | chr5.2:73906498-73906517 | MS.gene016821:CDS | 25.0% |
| ! | TGATCATTTAAGTATTAAGG+AGG | - | chr5.2:73905768-73905787 | None:intergenic | 25.0% |
| ! | TTGTACTCCAAAATAAGTTA+AGG | + | chr5.2:73903721-73903740 | MS.gene016821:intron | 25.0% |
| ! | TTGTATTATCAAATGCTCTT+CGG | + | chr5.2:73906433-73906452 | MS.gene016821:CDS | 25.0% |
| !! | GATTTTGTAATCTTGATTGA+AGG | + | chr5.2:73905089-73905108 | MS.gene016821:intron | 25.0% |
| !!! | AATGCATGGATCATTTTTTT+TGG | + | chr5.2:73906240-73906259 | MS.gene016821:intron | 25.0% |
| !!! | ATATTTTTATGCATGACACA+TGG | - | chr5.2:73903753-73903772 | None:intergenic | 25.0% |
| !!! | ATGCATGGATCATTTTTTTT+GGG | + | chr5.2:73906241-73906260 | MS.gene016821:intron | 25.0% |
| !!! | ATTGATGTATTGATTACAGT+TGG | + | chr5.2:73905864-73905883 | MS.gene016821:intron | 25.0% |
| !!! | CAAAATATTGGATTAGCAAA+AGG | + | chr5.2:73905168-73905187 | MS.gene016821:intron | 25.0% |
| !!! | TCCCCTTTTTATTTTAACAT+AGG | + | chr5.2:73904616-73904635 | MS.gene016821:intron | 25.0% |
| !!! | TTGATTATGAATTTTAGAGC+TGG | + | chr5.2:73903981-73904000 | MS.gene016821:intron | 25.0% |
| AACAAGATAACTTCTGATTC+CGG | + | chr5.2:73903072-73903091 | MS.gene016821:CDS | 30.0% | |
| AACATAAGCATGCTTATATC+TGG | - | chr5.2:73904667-73904686 | None:intergenic | 30.0% | |
| AACGGTACTATATTTGGATT+TGG | - | chr5.2:73904884-73904903 | None:intergenic | 30.0% | |
| AAGCTTAAAACCAACAAGTT+TGG | - | chr5.2:73906083-73906102 | None:intergenic | 30.0% | |
| AATGAAAGAAAGGCAAAAAG+AGG | - | chr5.2:73906129-73906148 | None:intergenic | 30.0% | |
| ACATAAGCATGCTTATATCT+GGG | - | chr5.2:73904666-73904685 | None:intergenic | 30.0% | |
| ACTAATTATTAGGGTGGTTA+TGG | + | chr5.2:73903355-73903374 | MS.gene016821:intron | 30.0% | |
| AGTGCTATATGCAAAACTAA+CGG | + | chr5.2:73904779-73904798 | MS.gene016821:intron | 30.0% | |
| ATATAAGTTATAAACAGGGG+GGG | + | chr5.2:73905538-73905557 | MS.gene016821:intron | 30.0% | |
| ATATCAGTTTCAAAGGCTAT+GGG | + | chr5.2:73903831-73903850 | MS.gene016821:intron | 30.0% | |
| ATATGCTATGCCTATTTCAT+AGG | + | chr5.2:73905995-73906014 | MS.gene016821:intron | 30.0% | |
| ATTGGTGCACAATAAATACA+AGG | - | chr5.2:73904096-73904115 | None:intergenic | 30.0% | |
| CAATATATATGACACACACA+AGG | + | chr5.2:73904222-73904241 | MS.gene016821:intron | 30.0% | |
| CAATGTAACATCACATATGA+TGG | - | chr5.2:73905410-73905429 | None:intergenic | 30.0% | |
| CATCATATGTGATGTTACAT+TGG | + | chr5.2:73905408-73905427 | MS.gene016821:intron | 30.0% | |
| CTTAAAAGGTCATGATGTAT+AGG | + | chr5.2:73905210-73905229 | MS.gene016821:intron | 30.0% | |
| GAATAAGTGAGAATTTGTAG+AGG | + | chr5.2:73905059-73905078 | MS.gene016821:intron | 30.0% | |
| GAGCAAATTGTTAATACATC+TGG | - | chr5.2:73905013-73905032 | None:intergenic | 30.0% | |
| GATATAAGCATGCTTATGTT+TGG | + | chr5.2:73904667-73904686 | MS.gene016821:intron | 30.0% | |
| GCGAATCAAAAATGAAAGAA+AGG | - | chr5.2:73906139-73906158 | None:intergenic | 30.0% | |
| GTCTTAACTAATTATTAGGG+TGG | + | chr5.2:73903349-73903368 | MS.gene016821:intron | 30.0% | |
| GTCTTCTTGCATTTATCATT+TGG | + | chr5.2:73905143-73905162 | MS.gene016821:intron | 30.0% | |
| TAAATAGCTTATGGGCATAA+TGG | + | chr5.2:73905730-73905749 | MS.gene016821:intron | 30.0% | |
| TAACATAAGTTTCGTGATGT+CGG | + | chr5.2:73906312-73906331 | MS.gene016821:intron | 30.0% | |
| TATATTCTCTGCAGAATACA+AGG | - | chr5.2:73903792-73903811 | None:intergenic | 30.0% | |
| TATGCTATGCCTATTTCATA+GGG | + | chr5.2:73905996-73906015 | MS.gene016821:intron | 30.0% | |
| TCTTGAAGACACGATTATTA+AGG | + | chr5.2:73904494-73904513 | MS.gene016821:intron | 30.0% | |
| TGATAATAAGTAGGTCTAGA+GGG | - | chr5.2:73904537-73904556 | None:intergenic | 30.0% | |
| TTAGCTTAAAGAAATGGAGT+TGG | + | chr5.2:73904706-73904725 | MS.gene016821:intron | 30.0% | |
| TTGAAGAGTTTATGTTACAC+CGG | + | chr5.2:73905351-73905370 | MS.gene016821:intron | 30.0% | |
| TTGGCTAAACTTTGTATAGA+TGG | + | chr5.2:73903219-73903238 | MS.gene016821:CDS | 30.0% | |
| TTGGTGCACAATAAATACAA+GGG | - | chr5.2:73904095-73904114 | None:intergenic | 30.0% | |
| TTGTATTTATTGTGCACCAA+TGG | + | chr5.2:73904095-73904114 | MS.gene016821:CDS | 30.0% | |
| TTTGCTGATATCAGTTTCAA+AGG | + | chr5.2:73903824-73903843 | MS.gene016821:intron | 30.0% | |
| TTTGTATCTCACTTACTCAA+AGG | + | chr5.2:73905037-73905056 | MS.gene016821:intron | 30.0% | |
| TTTGTTAAATAAGTGCACTC+TGG | + | chr5.2:73905955-73905974 | MS.gene016821:intron | 30.0% | |
| ! | AACTTTACATTTCTGACTTG+TGG | + | chr5.2:73904375-73904394 | MS.gene016821:intron | 30.0% |
| ! | CTATACATCATGACCTTTTA+AGG | - | chr5.2:73905212-73905231 | None:intergenic | 30.0% |
| ! | GAATGCTCCTTAACTTATTT+TGG | - | chr5.2:73903731-73903750 | None:intergenic | 30.0% |
| ! | TATAGATGGTGACATTTTCA+AGG | + | chr5.2:73903233-73903252 | MS.gene016821:CDS | 30.0% |
| ! | TATTGTGCAAACAAAAGTGT+TGG | + | chr5.2:73906335-73906354 | MS.gene016821:intron | 30.0% |
| ! | TCTCAATTTGTCAGTCATTT+TGG | + | chr5.2:73906271-73906290 | MS.gene016821:intron | 30.0% |
| ! | TTTTGTCGGTGATAATAAGT+AGG | - | chr5.2:73904546-73904565 | None:intergenic | 30.0% |
| !! | AAGTTTGACTTGACCTTAAA+AGG | + | chr5.2:73905196-73905215 | MS.gene016821:intron | 30.0% |
| !! | ATTGTCAGGATTTTATTTGG+CGG | + | chr5.2:73904963-73904982 | MS.gene016821:intron | 30.0% |
| !! | CTGGTTCATTTTTGTTATAG+AGG | - | chr5.2:73903678-73903697 | None:intergenic | 30.0% |
| !! | TTCTTTCATTTTTGATTCGC+AGG | + | chr5.2:73906139-73906158 | MS.gene016821:intron | 30.0% |
| !!! | CTGCTTTTTCTTTGAATTTG+TGG | + | chr5.2:73905305-73905324 | MS.gene016821:intron | 30.0% |
| !!! | TGTTGATTTTGATCGTAGAT+AGG | + | chr5.2:73905584-73905603 | MS.gene016821:intron | 30.0% |
| !!! | TTTTTTTAGTCGTGAATGCA+TGG | + | chr5.2:73906226-73906245 | MS.gene016821:intron | 30.0% |
| AAAGGTCATGATGTATAGGT+AGG | + | chr5.2:73905214-73905233 | MS.gene016821:intron | 35.0% | |
| AAATCAACACTCTACTTTCC+TGG | - | chr5.2:73905573-73905592 | None:intergenic | 35.0% | |
| AACGGATGCAATTAGAAAAC+AGG | - | chr5.2:73903512-73903531 | None:intergenic | 35.0% | |
| AACTGTCTTAACTGAGACTT+GGG | + | chr5.2:73904004-73904023 | MS.gene016821:CDS | 35.0% | |
| AATTGGTTGCTTAAACGCTA+CGG | + | chr5.2:73903303-73903322 | MS.gene016821:CDS | 35.0% | |
| ACGGATGCAATTAGAAAACA+GGG | - | chr5.2:73903511-73903530 | None:intergenic | 35.0% | |
| ACTGTGTGAACAATATTGTC+AGG | + | chr5.2:73904949-73904968 | MS.gene016821:intron | 35.0% | |
| AGGAAGTCGAAGTTATAACT+CGG | + | chr5.2:73903268-73903287 | MS.gene016821:CDS | 35.0% | |
| ATATTTCTTAGACTTGAGCG+CGG | + | chr5.2:73904574-73904593 | MS.gene016821:intron | 35.0% | |
| ATCATACTTGCAAGTACCAT+TGG | - | chr5.2:73904114-73904133 | None:intergenic | 35.0% | |
| ATGACCTTGGATGATATAAG+AGG | - | chr5.2:73906201-73906220 | None:intergenic | 35.0% | |
| ATGCTATGCCTATTTCATAG+GGG | + | chr5.2:73905997-73906016 | MS.gene016821:intron | 35.0% | |
| ATTGATACTCTCTGTGCTTT+GGG | + | chr5.2:73903429-73903448 | MS.gene016821:intron | 35.0% | |
| CATAAGCATGCTTATATCTG+GGG | - | chr5.2:73904665-73904684 | None:intergenic | 35.0% | |
| GATATCAGTTTCAAAGGCTA+TGG | + | chr5.2:73903830-73903849 | MS.gene016821:intron | 35.0% | |
| GATTGTCATTGCACTTCATA+CGG | - | chr5.2:73904734-73904753 | None:intergenic | 35.0% | |
| GTGATAATAAGTAGGTCTAG+AGG | - | chr5.2:73904538-73904557 | None:intergenic | 35.0% | |
| GTGATGAAGATCATTGTTGT+AGG | + | chr5.2:73906037-73906056 | MS.gene016821:intron | 35.0% | |
| TAAATACAAGGGGAAGAAAG+AGG | - | chr5.2:73904084-73904103 | None:intergenic | 35.0% | |
| TCATACCATGTCACAAATTC+TGG | - | chr5.2:73904272-73904291 | None:intergenic | 35.0% | |
| TGATCGTAGATAGGATATCT+TGG | + | chr5.2:73905593-73905612 | MS.gene016821:intron | 35.0% | |
| TGGTGCACAATAAATACAAG+GGG | - | chr5.2:73904094-73904113 | None:intergenic | 35.0% | |
| TTAAGCCAGAATTTGTGACA+TGG | + | chr5.2:73904264-73904283 | MS.gene016821:intron | 35.0% | |
| TTGCTCTATCAAATGCTCTT+TGG | + | chr5.2:73904429-73904448 | MS.gene016821:intron | 35.0% | |
| TTGTATACCACCTATTTAGC+CGG | - | chr5.2:73905373-73905392 | None:intergenic | 35.0% | |
| TTTCCATATTCGTAAGGATG+TGG | + | chr5.2:73905492-73905511 | MS.gene016821:intron | 35.0% | |
| TTTGCCTCATTAGAAACAGT+AGG | - | chr5.2:73906550-73906569 | None:intergenic | 35.0% | |
| ! | AAATCAGAGTCGCATTTTCT+AGG | - | chr5.2:73904195-73904214 | None:intergenic | 35.0% |
| ! | AGTAGCACTCATCATTTTAG+AGG | + | chr5.2:73904856-73904875 | MS.gene016821:intron | 35.0% |
| ! | ATTTCTGACTTGTGGAAAAC+AGG | + | chr5.2:73904383-73904402 | MS.gene016821:intron | 35.0% |
| ! | CACATTACATTTCTGACTTG+TGG | + | chr5.2:73906379-73906398 | MS.gene016821:intron | 35.0% |
| ! | CTAAAATGATGAGTGCTACT+CGG | - | chr5.2:73904856-73904875 | None:intergenic | 35.0% |
| ! | GAAGTATTCTCTCTTGTGTT+TGG | - | chr5.2:73906480-73906499 | None:intergenic | 35.0% |
| ! | TATCTACTAGCTTCCAATGA+CGG | - | chr5.2:73905703-73905722 | None:intergenic | 35.0% |
| ! | TTATGTTACACCGGCTAAAT+AGG | + | chr5.2:73905360-73905379 | MS.gene016821:intron | 35.0% |
| ! | TTGAAGTGTTCCAAACTTGT+TGG | + | chr5.2:73906070-73906089 | MS.gene016821:intron | 35.0% |
| ! | TTGTTTTCATTAGCCGTCAT+TGG | + | chr5.2:73905687-73905706 | MS.gene016821:intron | 35.0% |
| !! | AAGACCTACTGTTTCTAATG+AGG | + | chr5.2:73906543-73906562 | MS.gene016821:CDS | 35.0% |
| !! | ACAGAGAGTATCAATCCTAA+TGG | - | chr5.2:73903424-73903443 | None:intergenic | 35.0% |
| !! | ATGTTGGTTTAGTCAGGTAT+AGG | + | chr5.2:73903901-73903920 | MS.gene016821:intron | 35.0% |
| !! | CAGAGAGTATCAATCCTAAT+GGG | - | chr5.2:73903423-73903442 | None:intergenic | 35.0% |
| !! | GTATTGATTACAGTTGGATG+TGG | + | chr5.2:73905870-73905889 | MS.gene016821:intron | 35.0% |
| !! | TACTGTTTCTAATGAGGCAA+AGG | + | chr5.2:73906549-73906568 | MS.gene016821:CDS | 35.0% |
| !! | TTGGAAATGTTGGTTTAGTC+AGG | + | chr5.2:73903895-73903914 | MS.gene016821:CDS | 35.0% |
| !! | TTGTCAGTCATTTTGGTCAA+TGG | + | chr5.2:73906278-73906297 | MS.gene016821:intron | 35.0% |
| AAGAGGTTAGACATACAAGC+TGG | - | chr5.2:73904067-73904086 | None:intergenic | 40.0% | |
| AAGTTATCTTGTTCTCCGAC+TGG | - | chr5.2:73903065-73903084 | None:intergenic | 40.0% | |
| ACAGTTGGATGTGGTCAATT+CGG | + | chr5.2:73905879-73905898 | MS.gene016821:intron | 40.0% | |
| AGGCTATGGGACAAAAAGAA+AGG | + | chr5.2:73903844-73903863 | MS.gene016821:CDS | 40.0% | |
| AGTTATCTTGTTCTCCGACT+GGG | - | chr5.2:73903064-73903083 | None:intergenic | 40.0% | |
| ATAACTTCTGATTCCGGTGA+GGG | + | chr5.2:73903078-73903097 | MS.gene016821:CDS | 40.0% | |
| ATAATTCCATCACTGAGGCT+AGG | - | chr5.2:73905445-73905464 | None:intergenic | 40.0% | |
| ATGCCACATCCTTACGAATA+TGG | - | chr5.2:73905498-73905517 | None:intergenic | 40.0% | |
| CATGACTTCCTTTCATAGTG+AGG | - | chr5.2:73905121-73905140 | None:intergenic | 40.0% | |
| GAACTGTCTTAACTGAGACT+TGG | + | chr5.2:73904003-73904022 | MS.gene016821:CDS | 40.0% | |
| GACTGATAATTCCATCACTG+AGG | - | chr5.2:73905450-73905469 | None:intergenic | 40.0% | |
| GATTGATACTCTCTGTGCTT+TGG | + | chr5.2:73903428-73903447 | MS.gene016821:intron | 40.0% | |
| GGAAGTCGAAGTTATAACTC+GGG | + | chr5.2:73903269-73903288 | MS.gene016821:CDS | 40.0% | |
| TCGTTGAGACTTGGAAATGT+TGG | + | chr5.2:73903885-73903904 | MS.gene016821:CDS | 40.0% | |
| TGATGTATAGGTAGGTGAGA+AGG | + | chr5.2:73905222-73905241 | MS.gene016821:intron | 40.0% | |
| TTAACTGAGACTTGGGAAGA+TGG | + | chr5.2:73904011-73904030 | MS.gene016821:CDS | 40.0% | |
| TTGGTTTAGTCAGGTATAGG+TGG | + | chr5.2:73903904-73903923 | MS.gene016821:intron | 40.0% | |
| ! | AGAAAGGCTAAAAGTACGAC+AGG | + | chr5.2:73903860-73903879 | MS.gene016821:CDS | 40.0% |
| ! | ATCGAACTTTTGCTTGTCTG+TGG | + | chr5.2:73903104-73903123 | MS.gene016821:CDS | 40.0% |
| ! | TCGAACTTTTGCTTGTCTGT+GGG | + | chr5.2:73903105-73903124 | MS.gene016821:CDS | 40.0% |
| !! | GGAAGATGGCTTGTTGTTAA+AGG | + | chr5.2:73904025-73904044 | MS.gene016821:CDS | 40.0% |
| !! | GTGGAAAACAGGTTGATATC+TGG | + | chr5.2:73904394-73904413 | MS.gene016821:intron | 40.0% |
| !! | TTTCAAGGCGTTGATTGAAG+AGG | + | chr5.2:73903248-73903267 | MS.gene016821:CDS | 40.0% |
| ACACGAAGAAAGGCGAGAAA+CGG | - | chr5.2:73903530-73903549 | None:intergenic | 45.0% | |
| ACAGAAATACACTTCCGCTC+TGG | - | chr5.2:73903166-73903185 | None:intergenic | 45.0% | |
| AGTCGAAGTTATAACTCGGG+AGG | + | chr5.2:73903272-73903291 | MS.gene016821:CDS | 45.0% | |
| GACGCCTCTTATATCATCCA+AGG | + | chr5.2:73906194-73906213 | MS.gene016821:CDS | 45.0% | |
| GATAACTTCTGATTCCGGTG+AGG | + | chr5.2:73903077-73903096 | MS.gene016821:CDS | 45.0% | |
| GGGTGTTTCCTCACTATGAA+AGG | + | chr5.2:73905110-73905129 | MS.gene016821:intron | 45.0% | |
| GTCGAAGTTATAACTCGGGA+GGG | + | chr5.2:73903273-73903292 | MS.gene016821:CDS | 45.0% | |
| GTGGTCAATTCGGTTCTGTT+TGG | + | chr5.2:73905889-73905908 | MS.gene016821:intron | 45.0% | |
| TAGGGGTTGAAAGTCCCATT+AGG | + | chr5.2:73903406-73903425 | MS.gene016821:intron | 45.0% | |
| TATGCCTATTTCATAGGGGC+TGG | + | chr5.2:73906001-73906020 | MS.gene016821:intron | 45.0% | |
| TCGAAGTTATAACTCGGGAG+GGG | + | chr5.2:73903274-73903293 | MS.gene016821:CDS | 45.0% | |
| TGATTTCCTAGCCTCAGTGA+TGG | + | chr5.2:73905436-73905455 | MS.gene016821:intron | 45.0% | |
| TGTGTTTGGTCATGTCCGAA+AGG | - | chr5.2:73906466-73906485 | None:intergenic | 45.0% | |
| ! | AGCCAAGTTGACTCTGAGTT+CGG | - | chr5.2:73903205-73903224 | None:intergenic | 45.0% |
| ! | GAAGTATTCTCTCTCGTGTC+TGG | - | chr5.2:73904476-73904495 | None:intergenic | 45.0% |
| ! | TGTTACACCGGCTAAATAGG+TGG | + | chr5.2:73905363-73905382 | MS.gene016821:intron | 45.0% |
| ! | TTGCTGAGCTCAAAGCATTC+AGG | - | chr5.2:73906174-73906193 | None:intergenic | 45.0% |
| !! | GTGGAAAACAGGTTGATGTC+TGG | + | chr5.2:73906398-73906417 | MS.gene016821:intron | 45.0% |
| !! | TATTATTATTAATAGAAATA+AGG | - | chr5.2:73903486-73903505 | None:intergenic | 5.0% |
| !!! | TTTTCATAATAATTTTATTT+TGG | + | chr5.2:73903945-73903964 | MS.gene016821:intron | 5.0% |
| AAAGTTCGATCCTCCCTCAC+CGG | - | chr5.2:73903094-73903113 | None:intergenic | 50.0% | |
| AGTCGGTTGGATAACCAGAG+CGG | + | chr5.2:73903149-73903168 | MS.gene016821:CDS | 50.0% | |
| ATACATCTGGTCTCTCCACC+TGG | - | chr5.2:73905000-73905019 | None:intergenic | 50.0% | |
| CGACAGGATTCGTTGAGACT+TGG | + | chr5.2:73903876-73903895 | MS.gene016821:CDS | 50.0% | |
| CGTTCCAGCCCCTATGAAAT+AGG | - | chr5.2:73906008-73906027 | None:intergenic | 50.0% | |
| CTCTGGTTATCCAACCGACT+GGG | - | chr5.2:73903149-73903168 | None:intergenic | 50.0% | |
| CTCTTTGGCAGACGTCCTTT+CGG | + | chr5.2:73904444-73904463 | MS.gene016821:intron | 50.0% | |
| GTCAGCAAAAGTCTCCCAGT+CGG | + | chr5.2:73903047-73903066 | MS.gene016821:CDS | 50.0% | |
| TCATAGGGGCTGGAACGTAT+TGG | + | chr5.2:73906011-73906030 | MS.gene016821:intron | 50.0% | |
| TGAACGCAGGCTCAAAGCTA+TGG | + | chr5.2:73902981-73903000 | MS.gene016821:CDS | 50.0% | |
| TGGTTGCTTAAACGCTACGG+CGG | + | chr5.2:73903306-73903325 | MS.gene016821:CDS | 50.0% | |
| TTCTCCAGTGAAGACCCAGT+CGG | + | chr5.2:73903132-73903151 | MS.gene016821:CDS | 50.0% | |
| ! | CTGAGCTCAAAGCATTCAGG+AGG | - | chr5.2:73906171-73906190 | None:intergenic | 50.0% |
| ! | GCCAAGTTGACTCTGAGTTC+GGG | - | chr5.2:73903204-73903223 | None:intergenic | 50.0% |
| ! | GGAGACTTTTGCTGACAGCA+AGG | - | chr5.2:73903043-73903062 | None:intergenic | 50.0% |
| !! | TAGCTTTGAGCCTGCGTTCA+AGG | - | chr5.2:73902981-73903000 | None:intergenic | 50.0% |
| ACTTCTGATTCCGGTGAGGG+AGG | + | chr5.2:73903081-73903100 | MS.gene016821:CDS | 55.0% | |
| CAGGGGGGGATAAAGAAACC+AGG | + | chr5.2:73905552-73905571 | MS.gene016821:intron | 55.0% | |
| CGTGTCTGGTCATGTCCGAA+AGG | - | chr5.2:73904462-73904481 | None:intergenic | 55.0% | |
| CTCTTCGGCAGACGTCCTTT+CGG | + | chr5.2:73906448-73906467 | MS.gene016821:CDS | 55.0% | |
| GCCCGAACTCAGAGTCAACT+TGG | + | chr5.2:73903200-73903219 | MS.gene016821:CDS | 55.0% | |
| GCTCTGGTTATCCAACCGAC+TGG | - | chr5.2:73903150-73903169 | None:intergenic | 55.0% | |
| GGTTGCTTAAACGCTACGGC+GGG | + | chr5.2:73903307-73903326 | MS.gene016821:CDS | 55.0% | |
| GGTTGGATGACCTTGAACGC+AGG | + | chr5.2:73902968-73902987 | MS.gene016821:CDS | 55.0% | |
| TTGGCGGTGTCTTACAGACC+AGG | + | chr5.2:73904979-73904998 | MS.gene016821:intron | 55.0% | |
| !! | CAGGTTGATGTCTGGTCTGC+TGG | + | chr5.2:73906406-73906425 | MS.gene016821:intron | 55.0% |
| CCAACCGACTGGGTCTTCAC+TGG | - | chr5.2:73903139-73903158 | None:intergenic | 60.0% | |
| CCAGTGAAGACCCAGTCGGT+TGG | + | chr5.2:73903136-73903155 | MS.gene016821:CDS | 60.0% | |
| CGGCGGGAGAAGTGAGTGAT+AGG | + | chr5.2:73903323-73903342 | MS.gene016821:intron | 60.0% | |
| CTCGGGAGGGGCTGAAGAAT+TGG | + | chr5.2:73903286-73903305 | MS.gene016821:CDS | 60.0% | |
| GCGGTGTCTTACAGACCAGG+TGG | + | chr5.2:73904982-73905001 | MS.gene016821:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 73902958 | 73906579 | 73902958 | ID=MS.gene016821 |
| chr5.2 | mRNA | 73902958 | 73906579 | 73902958 | ID=MS.gene016821.t1;Parent=MS.gene016821 |
| chr5.2 | exon | 73902958 | 73903333 | 73902958 | ID=MS.gene016821.t1.exon1;Parent=MS.gene016821.t1 |
| chr5.2 | CDS | 73902958 | 73903333 | 73902958 | ID=cds.MS.gene016821.t1;Parent=MS.gene016821.t1 |
| chr5.2 | exon | 73903838 | 73903916 | 73903838 | ID=MS.gene016821.t1.exon2;Parent=MS.gene016821.t1 |
| chr5.2 | CDS | 73903838 | 73903916 | 73903838 | ID=cds.MS.gene016821.t1;Parent=MS.gene016821.t1 |
| chr5.2 | exon | 73903998 | 73904116 | 73903998 | ID=MS.gene016821.t1.exon3;Parent=MS.gene016821.t1 |
| chr5.2 | CDS | 73903998 | 73904116 | 73903998 | ID=cds.MS.gene016821.t1;Parent=MS.gene016821.t1 |
| chr5.2 | exon | 73906017 | 73906032 | 73906017 | ID=MS.gene016821.t1.exon4;Parent=MS.gene016821.t1 |
| chr5.2 | CDS | 73906017 | 73906032 | 73906017 | ID=cds.MS.gene016821.t1;Parent=MS.gene016821.t1 |
| chr5.2 | exon | 73906161 | 73906215 | 73906161 | ID=MS.gene016821.t1.exon5;Parent=MS.gene016821.t1 |
| chr5.2 | CDS | 73906161 | 73906215 | 73906161 | ID=cds.MS.gene016821.t1;Parent=MS.gene016821.t1 |
| chr5.2 | exon | 73906409 | 73906579 | 73906409 | ID=MS.gene016821.t1.exon6;Parent=MS.gene016821.t1 |
| chr5.2 | CDS | 73906409 | 73906579 | 73906409 | ID=cds.MS.gene016821.t1;Parent=MS.gene016821.t1 |
| Gene Sequence |
| Protein sequence |
