AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016878

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016878.t1 MTR_5g088060 78.261 483 41 6 176 632 17 461 0.0 695
MS.gene016878.t1 MTR_5g088060 89.714 175 18 0 1 175 1 175 1.55e-103 322
MS.gene016878.t1 MTR_5g488160 78.261 483 41 6 176 632 17 461 0.0 695
MS.gene016878.t1 MTR_5g488160 89.714 175 18 0 1 175 1 175 1.55e-103 322
MS.gene016878.t1 MTR_5g088010 89.328 253 17 4 386 632 1 249 1.66e-148 429
MS.gene016878.t1 MTR_5g027570 65.957 235 65 7 357 580 1 231 3.02e-85 266
MS.gene016878.t1 MTR_5g088005 81.595 163 17 1 5 167 12 161 1.74e-83 259
MS.gene016878.t1 MTR_5g088005 65.000 180 15 3 176 354 24 156 2.33e-62 204
MS.gene016878.t1 MTR_5g088200 71.090 211 17 3 9 175 23 233 1.37e-81 276
MS.gene016878.t1 MTR_5g027770 47.443 352 85 8 7 329 31 311 1.79e-71 234
MS.gene016878.t1 MTR_5g027770 61.184 152 42 2 3 137 160 311 3.91e-43 158
MS.gene016878.t1 MTR_5g027770 56.098 82 22 3 370 445 98 171 6.39e-15 76.6
MS.gene016878.t1 MTR_5g027550 42.761 297 81 8 357 632 1 229 7.50e-54 184
MS.gene016878.t1 MTR_5g027780 40.969 227 42 5 176 402 40 174 7.44e-31 119
MS.gene016878.t1 MTR_5g027780 50.420 119 24 2 13 123 36 127 5.76e-21 91.3
MS.gene016878.t1 MTR_8g063600 58.228 79 31 2 438 515 103 180 2.33e-22 98.2
MS.gene016878.t1 MTR_8g063870 51.064 94 45 1 422 515 74 166 2.89e-22 97.4
MS.gene016878.t1 MTR_5g069710 58.228 79 29 2 442 519 134 209 4.66e-22 97.8
MS.gene016878.t1 MTR_3g462790 64.179 67 21 1 442 508 149 212 8.33e-22 97.1
MS.gene016878.t1 MTR_1g111830 62.687 67 22 1 442 508 126 189 4.65e-21 93.2
MS.gene016878.t1 MTR_7g067080 46.087 115 48 3 442 554 142 244 4.80e-21 94.7
MS.gene016878.t1 MTR_5g081860 56.790 81 33 2 429 508 113 192 7.17e-21 93.2
MS.gene016878.t1 MTR_4g111975 53.165 79 32 3 438 514 135 210 7.02e-20 91.3
MS.gene016878.t1 MTR_1g048660 55.556 72 29 1 442 513 14 82 1.41e-18 81.3
MS.gene016878.t1 MTR_3g104370 48.571 70 36 0 442 511 93 162 2.43e-18 85.1
MS.gene016878.t1 MTR_5g075760 42.241 116 64 2 397 512 64 176 2.61e-18 84.3
MS.gene016878.t1 MTR_2g100930 53.846 65 27 1 442 506 111 172 1.47e-17 85.1
MS.gene016878.t1 MTR_4g100630 51.515 66 27 2 442 506 97 158 1.03e-16 82.0
MS.gene016878.t1 MTR_4g015130 56.667 60 23 1 450 509 3 59 2.30e-16 74.7
MS.gene016878.t1 MTR_8g101650 65.217 46 16 0 442 487 107 152 6.63e-16 79.0
MS.gene016878.t1 MTR_6g092540 52.308 65 28 1 442 506 99 160 6.68e-16 79.0
MS.gene016878.t1 MTR_5g037080 67.391 46 15 0 442 487 104 149 7.84e-16 79.3
MS.gene016878.t1 MTR_4g107230 68.889 45 14 0 442 486 86 130 9.79e-16 78.6
MS.gene016878.t1 MTR_5g075790 39.200 125 54 3 397 512 73 184 1.64e-15 76.6
MS.gene016878.t1 MTR_1g083180 39.683 126 55 7 408 515 13 135 4.52e-15 74.3
MS.gene016878.t1 MTR_2g090305 35.714 98 58 2 442 537 30 124 3.84e-14 71.6
MS.gene016878.t1 MTR_1g033620 55.932 59 22 2 456 513 21 76 1.10e-13 71.6
MS.gene016878.t1 MTR_0036s0260 40.260 77 43 1 442 518 30 103 1.38e-13 70.5
MS.gene016878.t1 MTR_3g070110 52.778 72 30 2 441 508 96 167 3.69e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016878.t1 AT5G58900 41.176 136 64 3 442 572 143 267 2.38e-23 100
MS.gene016878.t1 AT5G08520 56.790 81 31 2 438 517 115 192 1.82e-22 98.6
MS.gene016878.t1 AT5G04760 60.526 76 27 1 433 508 92 164 2.53e-22 96.3
MS.gene016878.t1 AT5G01200 61.429 70 23 2 442 510 148 214 4.30e-21 94.0
MS.gene016878.t1 AT2G38090 57.692 78 28 3 435 510 135 209 1.79e-20 92.8
MS.gene016878.t1 AT1G49010 53.659 82 33 3 438 517 131 209 5.99e-20 91.7
MS.gene016878.t1 AT5G61620 43.651 126 51 5 434 551 101 214 4.32e-19 89.0
MS.gene016878.t1 AT3G11280 43.443 122 50 5 442 552 129 242 2.57e-18 85.9
MS.gene016878.t1 AT3G11280 43.443 122 50 5 442 552 129 242 2.57e-18 85.9
MS.gene016878.t1 AT5G23650 52.632 76 33 1 442 517 122 194 4.98e-18 86.3
MS.gene016878.t1 AT3G10580 39.552 134 63 5 429 552 77 202 1.19e-17 83.6
MS.gene016878.t1 AT3G10580 38.028 142 70 5 429 560 77 210 1.42e-17 84.0
MS.gene016878.t1 AT5G05790 55.000 80 28 3 438 512 128 204 2.44e-17 83.2
MS.gene016878.t1 AT5G05790 55.000 80 28 3 438 512 128 204 2.44e-17 83.2
MS.gene016878.t1 AT5G47390 45.745 94 44 4 442 532 98 187 4.66e-17 84.0
MS.gene016878.t1 AT1G70000 67.391 46 15 0 442 487 100 145 1.84e-16 80.1
MS.gene016878.t1 AT1G70000 67.391 46 15 0 442 487 100 145 1.84e-16 80.1
MS.gene016878.t1 AT5G56840 55.172 58 26 0 442 499 93 150 2.45e-16 79.3
MS.gene016878.t1 AT4G09450 54.412 68 28 1 442 509 93 157 3.83e-16 77.8
MS.gene016878.t1 AT1G74840 68.889 45 14 0 442 486 98 142 1.30e-15 77.4
MS.gene016878.t1 AT3G16350 65.217 46 16 0 442 487 139 184 1.36e-15 79.7
MS.gene016878.t1 AT1G74840 68.889 45 14 0 442 486 98 142 2.15e-15 77.0
MS.gene016878.t1 AT1G19000 68.889 45 14 0 442 486 104 148 3.41e-15 77.0
MS.gene016878.t1 AT1G19000 68.889 45 14 0 442 486 104 148 3.41e-15 77.0
MS.gene016878.t1 AT3G10590 50.000 68 30 2 442 509 113 176 1.73e-12 67.4

Find 180 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5.2:-74590003 None:intergenic
TCACCTTGTTCTTGGGTATT+TGG 0.139349 5.2:-74587894 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5.2:-74587164 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5.2:-74588017 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.250754 5.2:-74587768 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5.2:-74589630 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5.2:+74588073 MS.gene016878:CDS
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5.2:-74589613 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 5.2:+74587220 MS.gene016878:CDS
CTGAACATGTTTGGCATCAT+TGG 0.290231 5.2:-74587817 None:intergenic
CCTGCTGCAGCCGGGGATAC+AGG 0.292706 5.2:-74588715 None:intergenic
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5.2:-74590385 None:intergenic
TCACATGGTCACCTTGTTCT+TGG 0.300461 5.2:-74587902 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5.2:-74589631 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5.2:+74588664 MS.gene016878:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5.2:-74588538 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5.2:-74588829 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5.2:+74590000 MS.gene016878:CDS
CACATGGTCACCTTGTTCTT+GGG 0.355028 5.2:-74587901 None:intergenic
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5.2:-74588539 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5.2:+74588463 MS.gene016878:intron
GGTACCCTAGGACGAAAATT+AGG 0.358014 5.2:-74588616 None:intergenic
CCTGCATATGCTTTCCCACC+TGG 0.358776 5.2:+74588658 MS.gene016878:CDS
TGAGAAGATGCGCAACTTGT+TGG 0.359768 5.2:+74590402 MS.gene016878:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.2:-74587826 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.2:-74588773 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5.2:-74587170 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5.2:-74588023 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5.2:+74587957 MS.gene016878:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5.2:-74590348 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5.2:+74587104 MS.gene016878:CDS
AAACAGAAATCAAACGGTTC+TGG 0.380690 5.2:+74587612 MS.gene016878:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5.2:-74589456 None:intergenic
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5.2:-74588532 None:intergenic
AACCTTGTCCTGCTGCTGCC+GGG 0.402092 5.2:-74587776 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.2:+74587193 MS.gene016878:CDS
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.2:+74588046 MS.gene016878:CDS
CTGAACATGTTTGGCATCAA+TGG 0.415429 5.2:-74588764 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5.2:+74588814 MS.gene016878:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5.2:+74588538 MS.gene016878:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5.2:+74589928 MS.gene016878:CDS
TATGCTGTTAATTATCCAAC+TGG 0.429719 5.2:+74587867 MS.gene016878:CDS
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5.2:+74590258 MS.gene016878:CDS
GGATTCTCGCCATTAGGATA+AGG 0.435944 5.2:-74587741 None:intergenic
GGATTCTCACCATTAGGATA+AGG 0.437709 5.2:-74588688 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.439906 5.2:-74587747 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5.2:+74590009 MS.gene016878:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5.2:+74589481 MS.gene016878:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5.2:-74588694 None:intergenic
GGACGAAAATTAGGAGCAAC+AGG 0.444424 5.2:-74588607 None:intergenic
ATTTGTGTTACTGTTGCGCT+TGG 0.444589 5.2:-74587688 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 5.2:+74590213 MS.gene016878:CDS
GGTGATGGCATCTTATTCTT+CGG 0.445274 5.2:-74587645 None:intergenic
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 5.2:-74590311 None:intergenic
AAACCTTGTCCTGCTGCTGC+CGG 0.447814 5.2:-74587777 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5.2:-74589506 None:intergenic
TTACTGTTGCGCTTGGGACC+TGG 0.453629 5.2:-74587681 None:intergenic
CCTGTATCCCCGGCTGCAGC+AGG 0.462309 5.2:+74588715 MS.gene016878:CDS
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5.2:+74590352 MS.gene016878:CDS
CCTGTATCCCCGGCAGCAGC+AGG 0.464792 5.2:+74587768 MS.gene016878:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5.2:+74588679 MS.gene016878:CDS
AACCTTGTCCTGCTGCAGCC+GGG 0.469596 5.2:-74588723 None:intergenic
TGGGTATTTGGCCTTCCAGT+TGG 0.469841 5.2:-74587882 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5.2:-74589423 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5.2:+74589426 MS.gene016878:CDS
AAACCTTGTCCTGCTGCAGC+CGG 0.478250 5.2:-74588724 None:intergenic
TGAACATGTTTGGCATCATT+GGG 0.485304 5.2:-74587816 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5.2:+74589471 MS.gene016878:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5.2:-74588589 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5.2:-74587660 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 5.2:-74587129 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5.2:-74587982 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5.2:-74587762 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5.2:+74589620 MS.gene016878:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5.2:+74590196 MS.gene016878:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5.2:+74588476 MS.gene016878:CDS
GTGACGATGCCTTATCCTAA+TGG 0.498221 5.2:+74587732 MS.gene016878:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5.2:+74587758 MS.gene016878:CDS
GCAGCCGGGGATACAGGCTT+AGG 0.505668 5.2:-74588709 None:intergenic
GAATCCTAAGCCTGTATCCC+CGG 0.509484 5.2:+74588705 MS.gene016878:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5.2:-74588537 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5.2:+74588771 MS.gene016878:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5.2:+74587824 MS.gene016878:CDS
TAATTAACAGCATAAGCATT+CGG 0.516489 5.2:-74587858 None:intergenic
TATGCAGGAACAGCAATGTC+AGG 0.519339 5.2:-74588643 None:intergenic
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5.2:+74587663 MS.gene016878:CDS
TTTGTGTTACTGTTGCGCTT+GGG 0.522204 5.2:-74587687 None:intergenic
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 5.2:-74590274 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5.2:+74589626 MS.gene016878:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5.2:+74588514 MS.gene016878:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5.2:-74589962 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5.2:+74587950 MS.gene016878:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5.2:+74589619 MS.gene016878:CDS
GTAATTATGGTGAGGATCAG+AGG 0.529504 5.2:+74587044 None:intergenic
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5.2:+74588457 MS.gene016878:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5.2:+74589502 MS.gene016878:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5.2:-74588805 None:intergenic
CAAGGTGACCATGTGAATCA+TGG 0.533701 5.2:+74587909 MS.gene016878:CDS
GTGATTAAACAGAAATCAAA+CGG 0.535847 5.2:+74587606 MS.gene016878:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5.2:-74589463 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5.2:-74588074 None:intergenic
AAGCGCAACAGTAACACAAA+TGG 0.541697 5.2:+74587690 MS.gene016878:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5.2:+74587974 MS.gene016878:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5.2:-74588574 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5.2:-74588511 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5.2:-74589530 None:intergenic
TTGGCATCATTGGGATGAGC+AGG 0.549424 5.2:-74587807 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.2:+74587188 MS.gene016878:CDS
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.2:+74588041 MS.gene016878:CDS
ACCTGAACAGAAGGAGCTCT+AGG 0.550359 5.2:-74587221 None:intergenic
GTCTGTTGCATTCCTTGAGG+AGG 0.550846 5.2:-74590145 None:intergenic
TCCCCGGCTGCAGCAGGACA+AGG 0.550986 5.2:+74588721 MS.gene016878:CDS
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5.2:-74588517 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5.2:-74590298 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5.2:-74589419 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5.2:-74588083 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5.2:-74590259 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.2:-74587840 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.2:-74588787 None:intergenic
AACAATGGAACCTGAACAGA+AGG 0.558920 5.2:-74587230 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5.2:-74589629 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.2:+74587831 MS.gene016878:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.2:+74588778 MS.gene016878:CDS
ATGTCAGGTGGAGGTACCCT+AGG 0.564282 5.2:-74588628 None:intergenic
ACCTTGTCCTGCTGCTGCCG+GGG 0.566255 5.2:-74587775 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5.2:-74589464 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5.2:-74589445 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5.2:-74589420 None:intergenic
TCCCCGGCAGCAGCAGGACA+AGG 0.572616 5.2:+74587774 MS.gene016878:CDS
GGATAAGGCATCGTCACCAC+AGG 0.573697 5.2:-74587726 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5.2:-74590367 None:intergenic
ACCTTGTCCTGCTGCAGCCG+GGG 0.578501 5.2:-74588722 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5.2:+74587097 MS.gene016878:CDS
GCATCATTGGGATGAGCAGG+TGG 0.581815 5.2:-74587804 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5.2:+74589501 MS.gene016878:CDS
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5.2:+74587036 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5.2:-74590193 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 5.2:-74587140 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5.2:-74588658 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5.2:-74588676 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5.2:-74590118 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 5.2:-74587200 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5.2:-74587993 None:intergenic
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5.2:+74589459 MS.gene016878:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5.2:-74590347 None:intergenic
GAAGGAATTGTAGAACCGAT+TGG 0.605792 5.2:-74590211 None:intergenic
CTGTTAATTATCCAACTGGA+AGG 0.607226 5.2:+74587871 MS.gene016878:CDS
CACTGCCATCTTAAACAACA+AGG 0.607403 5.2:+74590306 MS.gene016878:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 5.2:+74590063 MS.gene016878:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5.2:-74588751 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5.2:-74588053 None:intergenic
ACCGATATCATTGAGTCGGG+TGG 0.615037 5.2:+74589505 MS.gene016878:CDS
GGAACAGCAATGTCAGGTGG+AGG 0.617154 5.2:-74588637 None:intergenic
CTATTGATTATCCAAATGGA+AGG 0.618008 5.2:+74588818 MS.gene016878:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.2:-74587843 None:intergenic
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.2:-74588790 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 5.2:+74590133 MS.gene016878:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5.2:+74588566 MS.gene016878:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5.2:-74588754 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5.2:-74587717 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5.2:+74589614 MS.gene016878:CDS
GTGACCATGTGAATCATGGT+CGG 0.644274 5.2:+74587913 MS.gene016878:CDS
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5.2:-74590295 None:intergenic
AGGCCAAATACCCAAGAACA+AGG 0.645778 5.2:+74587891 MS.gene016878:CDS
TGACAACTTGCAAACCCAGT+TGG 0.648867 5.2:+74590333 MS.gene016878:CDS
GCAGGAACAGCAATGTCAGG+TGG 0.653146 5.2:-74588640 None:intergenic
AACACAGGAGCATCAACACT+AGG 0.653659 5.2:-74587948 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 5.2:+74587047 None:intergenic
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5.2:+74588558 MS.gene016878:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5.2:-74588672 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5.2:+74589633 MS.gene016878:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 5.2:+74587057 MS.gene016878:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5.2:+74587710 MS.gene016878:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5.2:-74587666 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.2:-74587110 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.2:-74587963 None:intergenic
TGTGTCTGTTGCATTCCTTG+AGG 0.673315 5.2:-74590148 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5.2:-74588673 None:intergenic
CGAAAATTAGGAGCAACAGG+CGG 0.711944 5.2:-74588604 None:intergenic
GATGCCGACCATGATTCACA+TGG 0.766610 5.2:-74587917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAACTTTCAAACAT+AGG - chr5.2:74589697-74589716 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr5.2:74589928-74589947 MS.gene016878:CDS 15.0%
!! ATTAAATAGAAGAAATCAAA+CGG + chr5.2:74588457-74588476 MS.gene016878:intron 15.0%
!! ATTATGATATCTTCTTGTTA+TGG + chr5.2:74589118-74589137 MS.gene016878:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - chr5.2:74589422-74589441 None:intergenic 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + chr5.2:74589330-74589349 MS.gene016878:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - chr5.2:74589169-74589188 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + chr5.2:74589304-74589323 MS.gene016878:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr5.2:74589875-74589894 MS.gene016878:intron 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + chr5.2:74589173-74589192 MS.gene016878:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5.2:74589304-74589323 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr5.2:74589874-74589893 MS.gene016878:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + chr5.2:74589372-74589391 MS.gene016878:intron 20.0%
! AAACAACGAGTCAAAAATAT+TGG + chr5.2:74588302-74588321 MS.gene016878:intron 25.0%
! ATCATATAAAAGACAAGATC+AGG - chr5.2:74589005-74589024 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG + chr5.2:74590063-74590082 MS.gene016878:CDS 25.0%
! CAAATTACAGTAAAGAACAA+TGG - chr5.2:74587248-74587267 None:intergenic 25.0%
! CACATTCATTCTCTATATAT+AGG + chr5.2:74589861-74589880 MS.gene016878:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + chr5.2:74589320-74589339 MS.gene016878:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG - chr5.2:74589423-74589442 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - chr5.2:74589426-74589445 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG + chr5.2:74587606-74587625 MS.gene016878:intron 25.0%
! TAAACAACGAGTGAAAAATA+TGG + chr5.2:74587451-74587470 MS.gene016878:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - chr5.2:74588808-74588827 None:intergenic 25.0%
! TAATTAACAGCATAAGCATT+CGG - chr5.2:74587861-74587880 None:intergenic 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5.2:74587538-74587557 MS.gene016878:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5.2:74587537-74587556 MS.gene016878:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - chr5.2:74588240-74588259 None:intergenic 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG - chr5.2:74587607-74587626 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + chr5.2:74588814-74588833 MS.gene016878:CDS 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + chr5.2:74589426-74589445 MS.gene016878:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + chr5.2:74588160-74588179 MS.gene016878:intron 25.0%
!! TTAGTGTAATGTGATTTTGA+TGG + chr5.2:74587307-74587326 MS.gene016878:intron 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + chr5.2:74589212-74589231 MS.gene016878:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr5.2:74589876-74589895 MS.gene016878:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + chr5.2:74588348-74588367 MS.gene016878:intron 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG - chr5.2:74589987-74590006 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG - chr5.2:74589988-74590007 None:intergenic 25.0%
ACATTCTCAACATGATTCAT+AGG - chr5.2:74587173-74587192 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + chr5.2:74590026-74590045 MS.gene016878:CDS 30.0%
CTCTTATGCTTGCAATAATA+TGG - chr5.2:74587388-74587407 None:intergenic 30.0%
TATGCTGTTAATTATCCAAC+TGG + chr5.2:74587867-74587886 MS.gene016878:CDS 30.0%
TGGAGTCGACAAATTTATTT+AGG + chr5.2:74588322-74588341 MS.gene016878:intron 30.0%
TTACTTTGATACCATTGAAG+TGG + chr5.2:74589049-74589068 MS.gene016878:intron 30.0%
TTTAATCACAGATCCATACA+CGG - chr5.2:74588443-74588462 None:intergenic 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - chr5.2:74589533-74589552 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + chr5.2:74588818-74588837 MS.gene016878:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG - chr5.2:74587167-74587186 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - chr5.2:74590006-74590025 None:intergenic 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + chr5.2:74589130-74589149 MS.gene016878:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5.2:74590388-74590407 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - chr5.2:74588364-74588383 None:intergenic 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG - chr5.2:74590314-74590333 None:intergenic 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - chr5.2:74588363-74588382 None:intergenic 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + chr5.2:74589143-74589162 MS.gene016878:intron 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG + chr5.2:74587500-74587519 MS.gene016878:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + chr5.2:74589235-74589254 MS.gene016878:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + chr5.2:74589234-74589253 MS.gene016878:intron 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - chr5.2:74588844-74588863 None:intergenic 30.0%
AAACAGAAATCAAACGGTTC+TGG + chr5.2:74587612-74587631 MS.gene016878:intron 35.0%
AGGCCAAATATCCAAAAACA+AGG + chr5.2:74588838-74588857 MS.gene016878:CDS 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr5.2:74590000-74590019 MS.gene016878:CDS 35.0%
CTGTTAATTATCCAACTGGA+AGG + chr5.2:74587871-74587890 MS.gene016878:CDS 35.0%
GAAACTTAACCAAGAAAACG+AGG - chr5.2:74588938-74588957 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - chr5.2:74589063-74589082 None:intergenic 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr5.2:74589896-74589915 MS.gene016878:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - chr5.2:74588867-74588886 None:intergenic 35.0%
TAGAAGAAATCAAACGGTTC+TGG + chr5.2:74588463-74588482 MS.gene016878:intron 35.0%
TGAACATGTTTGGCATCATT+GGG - chr5.2:74587819-74587838 None:intergenic 35.0%
TGTGAAAGATATGGAGAAGA+AGG + chr5.2:74590009-74590028 MS.gene016878:CDS 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr5.2:74589890-74589909 MS.gene016878:CDS 35.0%
TTTAATCACGGATCCATACA+CGG - chr5.2:74587595-74587614 None:intergenic 35.0%
! AATCGGTTCTACAATTCCTT+CGG + chr5.2:74590213-74590232 MS.gene016878:CDS 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr5.2:74590003-74590022 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5.2:74589192-74589211 MS.gene016878:intron 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG - chr5.2:74587516-74587535 None:intergenic 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + chr5.2:74588476-74588495 MS.gene016878:CDS 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + chr5.2:74588926-74588945 MS.gene016878:intron 35.0%
!! CAGCTTTTATTTCCATCGAA+GGG - chr5.2:74587515-74587534 None:intergenic 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + chr5.2:74590352-74590371 MS.gene016878:CDS 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG - chr5.2:74589982-74590001 None:intergenic 35.0%
AACAAACGAACCTGAACAGA+AGG - chr5.2:74588086-74588105 None:intergenic 40.0%
AACAATGGAACCTGAACAGA+AGG - chr5.2:74587233-74587252 None:intergenic 40.0%
AAGCGCAACAGTAACACAAA+TGG + chr5.2:74587690-74587709 MS.gene016878:CDS 40.0%
ACACTTTGTAGCTCAACTGA+AGG - chr5.2:74590121-74590140 None:intergenic 40.0%
AGATCCATACACGGAAAATC+AGG - chr5.2:74588434-74588453 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG + chr5.2:74590306-74590325 MS.gene016878:CDS 40.0%
CTGAACATGTTTGGCATCAA+TGG - chr5.2:74588767-74588786 None:intergenic 40.0%
CTGAACATGTTTGGCATCAT+TGG - chr5.2:74587820-74587839 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5.2:74589481-74589500 MS.gene016878:CDS 40.0%
GAAGGAATTGTAGAACCGAT+TGG - chr5.2:74590214-74590233 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG - chr5.2:74588691-74588710 None:intergenic 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr5.2:74589895-74589914 MS.gene016878:CDS 40.0%
TCACCTTGTTCTTGGGTATT+TGG - chr5.2:74587897-74587916 None:intergenic 40.0%
TGGATAAAGCAACACCAACT+GGG - chr5.2:74590350-74590369 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - chr5.2:74590351-74590370 None:intergenic 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5.2:74587188-74587207 MS.gene016878:CDS 40.0%
! ATTTGTGTTACTGTTGCGCT+TGG - chr5.2:74587691-74587710 None:intergenic 40.0%
! GGTGATGGCATCTTATTCTT+CGG - chr5.2:74587648-74587667 None:intergenic 40.0%
! TGCTCCTAATTTTCGTCCTA+GGG + chr5.2:74588612-74588631 MS.gene016878:CDS 40.0%
! TGGATATTTGGCCTTCCATT+TGG - chr5.2:74588832-74588851 None:intergenic 40.0%
! TTGCTCCTAATTTTCGTCCT+AGG + chr5.2:74588611-74588630 MS.gene016878:CDS 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - chr5.2:74590301-74590320 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5.2:74587579-74587598 MS.gene016878:intron 40.0%
! TTTGTGTTACTGTTGCGCTT+GGG - chr5.2:74587690-74587709 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + chr5.2:74588958-74588977 MS.gene016878:intron 40.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5.2:74587097-74587116 MS.gene016878:CDS 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - chr5.2:74588977-74588996 None:intergenic 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - chr5.2:74588976-74588995 None:intergenic 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + chr5.2:74588970-74588989 MS.gene016878:intron 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - chr5.2:74588852-74588871 None:intergenic 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + chr5.2:74588969-74588988 MS.gene016878:intron 40.0%
AAAAACATGGAAAGGGACGC+TGG + chr5.2:74589903-74589922 MS.gene016878:CDS 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr5.2:74589620-74589639 MS.gene016878:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - chr5.2:74589509-74589528 None:intergenic 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - chr5.2:74588077-74588096 None:intergenic 45.0%
AGGCCAAATACCCAAGAACA+AGG + chr5.2:74587891-74587910 MS.gene016878:CDS 45.0%
ATTGGCAGCAAGCACAACAT+AGG - chr5.2:74590196-74590215 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG + chr5.2:74590133-74590152 MS.gene016878:CDS 45.0%
CAAGGTGACCATGTGAATCA+TGG + chr5.2:74587909-74587928 MS.gene016878:CDS 45.0%
CACATGGTCACCTTGTTCTT+GGG - chr5.2:74587904-74587923 None:intergenic 45.0%
CGAAAATTAGGAGCAACAGG+CGG - chr5.2:74588607-74588626 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5.2:74589471-74589490 MS.gene016878:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - chr5.2:74589965-74589984 None:intergenic 45.0%
GGACGAAAATTAGGAGCAAC+AGG - chr5.2:74588610-74588629 None:intergenic 45.0%
GGAGTCTCATGTTGTTCCAT+AGG - chr5.2:74590277-74590296 None:intergenic 45.0%
GGATCCATACACGGAAAATC+AGG - chr5.2:74587586-74587605 None:intergenic 45.0%
GGATTCTCGCCATTAGGATA+AGG - chr5.2:74587744-74587763 None:intergenic 45.0%
GGCTTAGGATTCTCACCATT+AGG - chr5.2:74588697-74588716 None:intergenic 45.0%
GGTACCCTAGGACGAAAATT+AGG - chr5.2:74588619-74588638 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + chr5.2:74588679-74588698 MS.gene016878:CDS 45.0%
GTGACCATGTGAATCATGGT+CGG + chr5.2:74587913-74587932 MS.gene016878:CDS 45.0%
GTGACGATGCCTTATCCTAA+TGG + chr5.2:74587732-74587751 MS.gene016878:CDS 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - chr5.2:74587996-74588015 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG - chr5.2:74587143-74587162 None:intergenic 45.0%
TATGCAGGAACAGCAATGTC+AGG - chr5.2:74588646-74588665 None:intergenic 45.0%
TCACATGGTCACCTTGTTCT+TGG - chr5.2:74587905-74587924 None:intergenic 45.0%
TCCATAGGAGCAGTGACTAA+AGG - chr5.2:74590262-74590281 None:intergenic 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + chr5.2:74588073-74588092 MS.gene016878:CDS 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + chr5.2:74590258-74590277 MS.gene016878:CDS 45.0%
TGACAACTTGCAAACCCAGT+TGG + chr5.2:74590333-74590352 MS.gene016878:CDS 45.0%
TGAGAAGATGCGCAACTTGT+TGG + chr5.2:74590402-74590421 MS.gene016878:CDS 45.0%
TGTGTCTGTTGCATTCCTTG+AGG - chr5.2:74590151-74590170 None:intergenic 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5.2:74589466-74589485 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - chr5.2:74588679-74588698 None:intergenic 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5.2:74587113-74587132 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5.2:74589467-74589486 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + chr5.2:74590196-74590215 MS.gene016878:CDS 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - chr5.2:74588540-74588559 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - chr5.2:74588541-74588560 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + chr5.2:74587473-74587492 MS.gene016878:intron 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5.2:74590370-74590389 None:intergenic 45.0%
!! AACACAGGAGCATCAACACT+AGG - chr5.2:74587951-74587970 None:intergenic 45.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5.2:74587104-74587123 MS.gene016878:CDS 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + chr5.2:74587950-74587969 MS.gene016878:CDS 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG - chr5.2:74590232-74590251 None:intergenic 45.0%
!! TGGCACCGATATCATTGAGT+CGG + chr5.2:74589501-74589520 MS.gene016878:CDS 45.0%
AAGATGGCAGTGTCTTGAGG+AGG - chr5.2:74590298-74590317 None:intergenic 50.0%
ACCGATATCATTGAGTCGGG+TGG + chr5.2:74589505-74589524 MS.gene016878:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG - chr5.2:74587224-74587243 None:intergenic 50.0%
AGAAAGAGCTGGCGAAGACT+TGG - chr5.2:74587132-74587151 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5.2:74589459-74589478 MS.gene016878:CDS 50.0%
ATCGTCACCACAGGAAAGTG+AGG - chr5.2:74587720-74587739 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr5.2:74589614-74589633 MS.gene016878:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + chr5.2:74588538-74588557 MS.gene016878:CDS 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr5.2:74589633-74589652 None:intergenic 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr5.2:74589616-74589635 None:intergenic 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr5.2:74589619-74589638 MS.gene016878:CDS 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5.2:74587758-74587777 MS.gene016878:CDS 50.0%
GAGTAAACCGGGTGATGCTA+GGG + chr5.2:74589246-74589265 MS.gene016878:intron 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5.2:74588675-74588694 None:intergenic 50.0%
GATGCCGACCATGATTCACA+TGG - chr5.2:74587920-74587939 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - chr5.2:74587750-74587769 None:intergenic 50.0%
GGCTTTCGATAGCATGGTGA+TGG - chr5.2:74588514-74588533 None:intergenic 50.0%
GTCTGTTGCATTCCTTGAGG+AGG - chr5.2:74590148-74590167 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5.2:74588664-74588683 MS.gene016878:CDS 50.0%
TCACCATGCTATCGAAAGCC+AGG + chr5.2:74588514-74588533 MS.gene016878:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG + chr5.2:74587220-74587239 MS.gene016878:CDS 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr5.2:74589634-74589653 None:intergenic 50.0%
TCTTAGTCCCTAGCATCACC+CGG - chr5.2:74589256-74589275 None:intergenic 50.0%
TGAGTAAACCGGGTGATGCT+AGG + chr5.2:74589245-74589264 MS.gene016878:intron 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5.2:74587824-74587843 MS.gene016878:CDS 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5.2:74589459-74589478 None:intergenic 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr5.2:74589632-74589651 None:intergenic 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + chr5.2:74587121-74587140 MS.gene016878:CDS 50.0%
TTGGCATCAATGGCATGAGC+AGG - chr5.2:74588757-74588776 None:intergenic 50.0%
TTGGCATCATTGGGATGAGC+AGG - chr5.2:74587810-74587829 None:intergenic 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - chr5.2:74588542-74588561 None:intergenic 50.0%
! TGGGTATTTGGCCTTCCAGT+TGG - chr5.2:74587885-74587904 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr5.2:74589633-74589652 MS.gene016878:CDS 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + chr5.2:74587957-74587976 MS.gene016878:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + chr5.2:74589502-74589521 MS.gene016878:CDS 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5.2:74587193-74587212 MS.gene016878:CDS 50.0%
AAACCTTGTCCTGCTGCAGC+CGG - chr5.2:74588727-74588746 None:intergenic 55.0%
AAACCTTGTCCTGCTGCTGC+CGG - chr5.2:74587780-74587799 None:intergenic 55.0%
ACAGGCGGCTGCTGATGATA+AGG - chr5.2:74588592-74588611 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - chr5.2:74587985-74588004 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5.2:74587829-74587848 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5.2:74588658-74588677 MS.gene016878:CDS 55.0%
GAGGGATCTTGGACTGAAGC+CGG - chr5.2:74589448-74589467 None:intergenic 55.0%
GCAGGAACAGCAATGTCAGG+TGG - chr5.2:74588643-74588662 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - chr5.2:74588754-74588773 None:intergenic 55.0%
GCATCATTGGGATGAGCAGG+TGG - chr5.2:74587807-74587826 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5.2:74587846-74587865 None:intergenic 55.0%
GGAACAGCAATGTCAGGTGG+AGG - chr5.2:74588640-74588659 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5.2:74587203-74587222 None:intergenic 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5.2:74588676-74588695 None:intergenic 55.0%
GGATCAGAGGAGGAAAGCAG+AGG + chr5.2:74587057-74587076 MS.gene016878:CDS 55.0%
TGGCACGCTTCACTTTCCTG+TGG + chr5.2:74588558-74588577 MS.gene016878:CDS 55.0%
TGGCATGCCTCACTTTCCTG+TGG + chr5.2:74587710-74587729 MS.gene016878:CDS 55.0%
TTACTGTTGCGCTTGGGACC+TGG - chr5.2:74587684-74587703 None:intergenic 55.0%
TTCACTTTCCTGTGGCGACG+AGG + chr5.2:74588566-74588585 MS.gene016878:CDS 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr5.2:74589626-74589645 MS.gene016878:CDS 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5.2:74588661-74588680 None:intergenic 55.0%
!! ATGTCAGGTGGAGGTACCCT+AGG - chr5.2:74588631-74588650 None:intergenic 55.0%
!! GGATAAGGCATCGTCACCAC+AGG - chr5.2:74587729-74587748 None:intergenic 55.0%
AACCTTGTCCTGCTGCAGCC+GGG - chr5.2:74588726-74588745 None:intergenic 60.0%
AACCTTGTCCTGCTGCTGCC+GGG - chr5.2:74587779-74587798 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5.2:74587831-74587850 MS.gene016878:CDS 60.0%
GGCTTTCGATAGCGCGGTGA+TGG - chr5.2:74587663-74587682 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + chr5.2:74587663-74587682 MS.gene016878:CDS 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - chr5.2:74588577-74588596 None:intergenic 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5.2:74587843-74587862 None:intergenic 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - chr5.2:74587669-74587688 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - chr5.2:74588520-74588539 None:intergenic 60.0%
ACCTTGTCCTGCTGCAGCCG+GGG - chr5.2:74588725-74588744 None:intergenic 65.0%
ACCTTGTCCTGCTGCTGCCG+GGG - chr5.2:74587778-74587797 None:intergenic 65.0%
GCAGCCGGGGATACAGGCTT+AGG - chr5.2:74588712-74588731 None:intergenic 65.0%
GCTGCCGGGGATACAGGCTT+AGG - chr5.2:74587765-74587784 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - chr5.2:74588535-74588554 None:intergenic 65.0%
CCTGCTGCAGCCGGGGATAC+AGG - chr5.2:74588718-74588737 None:intergenic 70.0%
CCTGCTGCTGCCGGGGATAC+AGG - chr5.2:74587771-74587790 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + chr5.2:74587768-74587787 MS.gene016878:CDS 70.0%
CCTGTATCCCCGGCTGCAGC+AGG + chr5.2:74588715-74588734 MS.gene016878:CDS 70.0%
TCCCCGGCAGCAGCAGGACA+AGG + chr5.2:74587774-74587793 MS.gene016878:CDS 70.0%
TCCCCGGCTGCAGCAGGACA+AGG + chr5.2:74588721-74588740 MS.gene016878:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 74587050 74590438 74587050 ID=MS.gene016878
chr5.2 mRNA 74587050 74590438 74587050 ID=MS.gene016878.t1;Parent=MS.gene016878
chr5.2 exon 74587050 74587241 74587050 ID=MS.gene016878.t1.exon1;Parent=MS.gene016878.t1
chr5.2 CDS 74587050 74587241 74587050 ID=cds.MS.gene016878.t1;Parent=MS.gene016878.t1
chr5.2 exon 74587618 74588094 74587618 ID=MS.gene016878.t1.exon2;Parent=MS.gene016878.t1
chr5.2 CDS 74587618 74588094 74587618 ID=cds.MS.gene016878.t1;Parent=MS.gene016878.t1
chr5.2 exon 74588466 74588859 74588466 ID=MS.gene016878.t1.exon3;Parent=MS.gene016878.t1
chr5.2 CDS 74588466 74588859 74588466 ID=cds.MS.gene016878.t1;Parent=MS.gene016878.t1
chr5.2 exon 74589386 74589665 74589386 ID=MS.gene016878.t1.exon4;Parent=MS.gene016878.t1
chr5.2 CDS 74589386 74589665 74589386 ID=cds.MS.gene016878.t1;Parent=MS.gene016878.t1
chr5.2 exon 74589883 74590438 74589883 ID=MS.gene016878.t1.exon5;Parent=MS.gene016878.t1
chr5.2 CDS 74589883 74590438 74589883 ID=cds.MS.gene016878.t1;Parent=MS.gene016878.t1
Gene Sequence

>MS.gene016878

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGGTTCCATTGTTCTTTACTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGTGTAATGTGATTTTGATGGAGTTTTTTTGTTGAGATAAACATGTTTTGTATTGATCTATTTTTCATGATTTTAGCCATATTATTGCAAGCATAAGAGTTGATTTTGATAGAGTAACAATTAAAATATGATGTGTTAGAATTAAACAACGAGTGAAAAATATGGCGAGTCGACAAATCTGTTTTGGACATATTGTTTTTTATCCCTTCGATGGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCCGTGATTAAACAGAAATCAAACGGTTCTGGAAACTTCAATCCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGCGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATCCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTGTTAATTATCCAACTGGAAGGCCAAATACCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGGTTCGTTTGTTCTTTATTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGAGTAATGTGATTTTGATGGAGTTTTTTTGTTAAGATAAACATGATTTGTATTGATCTATTTTTCATGATTTAGCCATATTATTGCAAGCATAAGAATTGTATTATTGAGTAACAATTAAAATATGACGTGTTAGAATTAAACAACGAGTCAAAAATATTGGAGTCGACAAATTTATTTAGGACATATTGTTTTTTTCCCTTCAATGGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCTGTGATTAAATAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCTAATTTTCGTCCTAGGGTACCTCCACCTGACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCTGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGGTGACCATGTGAATGAACTTCATTGACTTTATGTAGTGACTTTTTTGTTACTGTTACTGTTTTTGAAGATTTTAGCCTCGTTTTCTTGGTTAAGTTTCAAGATTCTAGCTTAACCCTGTGGTGCTTTTTTGGGTATTGTTTTCCTGATCTTGTCTTTTATATGATTAATATAACTAATCTTCAATATTCTTACTTTGATACCATTGAAGTGGATTTTAGTTGCAACATGATGTTTTACGATGAGTGTTTTTTATTGTCATTATGATATCTTCTTGTTATGGTTCTGTAATTGGTTTGAGTAATTGGCCAAGTAATTTTCTTAACTTTCATGATTGGCTAGTTCATCTGATTAAGGCATAATTGATTTGATTAAGGCATCATTTTTTGAGTAAACCGGGTGATGCTAGGGACTAAGAATTAAGAAGATTTAGCATATTTTTACCATTCAAAAAATATTATGCATGTGGATATAATTCAAATTGGATGAAATTGGTTTTGAATTCTTATAGTTGTATTTTTTGTATAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTAAGTATGCAGTCTATGTTAATGTTAACCTATGTTTGAAAGTTATTTTTTTTATTTTATTGAGTTAAATATGTGTTTAGTTCTTATTAAATTACAGATTTTAACATCTATAAAATTATTCTGTTTTTTGACAATTGTTTTCATTTTATCTTCTATACAATTGTTTTCATATTATTTAGTTGAATTTGAATATTTCACATTCATTCTCTATATATAGGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTGGCAAAAGAACTTTGA
Protein sequence

>MS.gene016878.t1

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNHVENVSVPSVGQVAPRAPSVQKSNGSGNFNPKNKMPSPRYRKPGPKRNSNTNGMPHFPVVTMPYPNGENPKPVSPAAAGQGFTPPAHPNDAKHVQPPVQGDPNAYAVNYPTGRPNTQEQGDHVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVSVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPDIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRNLLAKEL