AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016879.t1 MTR_5g062790 74.516 310 27 4 1 264 1 304 1.74e-152 427
MS.gene016879.t1 MTR_5g088640 70.934 289 26 8 9 264 12 275 8.35e-127 361
MS.gene016879.t1 MTR_5g088080 70.504 278 30 6 9 259 12 264 2.25e-124 355
MS.gene016879.t1 MTR_5g088150 70.504 278 30 6 9 259 12 264 2.25e-124 355
MS.gene016879.t1 MTR_5g488210 70.504 278 30 6 9 259 12 264 2.25e-124 355
MS.gene016879.t1 MTR_5g488170 76.818 220 24 3 9 201 12 231 3.41e-112 323
MS.gene016879.t1 MTR_4g128190 55.319 282 44 9 1 243 1 239 8.67e-85 253
MS.gene016879.t1 MTR_5g088610 72.611 157 40 1 1 154 1 157 2.01e-74 231
MS.gene016879.t1 MTR_1g085770 52.703 222 84 8 2 205 4 222 1.66e-59 191
MS.gene016879.t1 MTR_1g085880 60.000 170 60 5 2 163 4 173 6.68e-56 178
MS.gene016879.t1 MTR_1g021230 41.520 171 86 3 10 167 58 227 1.00e-39 143
MS.gene016879.t1 MTR_1g083630 50.000 148 69 3 1 144 1 147 3.91e-39 144
MS.gene016879.t1 MTR_1g017000 40.782 179 96 4 9 178 12 189 5.60e-39 136
MS.gene016879.t1 MTR_3g052450 47.297 148 75 3 7 152 38 184 6.27e-39 142
MS.gene016879.t1 MTR_3g052430 52.542 118 55 1 7 124 39 155 3.45e-38 140
MS.gene016879.t1 MTR_8g042410 38.144 194 107 3 3 191 31 216 1.53e-37 139
MS.gene016879.t1 MTR_2g088170 53.782 119 54 1 10 128 30 147 8.04e-37 135
MS.gene016879.t1 MTR_4g073420 49.231 130 62 3 7 135 10 136 9.47e-37 132
MS.gene016879.t1 MTR_3g461490 50.427 117 56 2 9 124 12 127 1.17e-36 132
MS.gene016879.t1 MTR_0008s0280 50.847 118 57 1 9 126 12 128 2.34e-36 129
MS.gene016879.t1 MTR_5g029840 51.240 121 57 2 9 128 12 131 8.09e-36 130
MS.gene016879.t1 MTR_3g011610 49.558 113 56 1 10 122 38 149 1.53e-35 133
MS.gene016879.t1 MTR_5g007370 40.741 189 96 7 10 183 13 200 2.80e-35 128
MS.gene016879.t1 MTR_2g089620 52.212 113 52 2 10 121 13 124 3.36e-35 129
MS.gene016879.t1 MTR_7g035075 50.000 116 57 1 2 117 7 121 3.49e-35 125
MS.gene016879.t1 MTR_3g097450 52.632 114 52 2 8 120 11 123 3.56e-35 128
MS.gene016879.t1 MTR_8g095390 52.632 114 52 2 8 120 11 123 5.71e-35 127
MS.gene016879.t1 MTR_6g006030 51.351 111 53 1 2 112 7 116 7.98e-35 124
MS.gene016879.t1 MTR_4g091490 39.645 169 97 4 10 176 14 179 8.06e-35 128
MS.gene016879.t1 MTR_2g011660 52.679 112 51 2 10 120 14 124 1.60e-34 127
MS.gene016879.t1 MTR_1g043080 51.456 103 49 1 10 112 13 114 1.90e-34 125
MS.gene016879.t1 MTR_2g064160 48.718 117 58 2 5 120 7 122 2.10e-34 126
MS.gene016879.t1 MTR_7g115650 50.467 107 51 2 10 115 13 118 2.45e-34 123
MS.gene016879.t1 MTR_3g074520 48.333 120 60 2 10 128 13 131 2.58e-34 127
MS.gene016879.t1 MTR_4g478180 50.000 116 56 2 10 124 14 128 3.59e-34 126
MS.gene016879.t1 MTR_7g110830 45.270 148 70 4 10 147 13 159 3.95e-34 127
MS.gene016879.t1 MTR_1g076150 51.456 103 49 1 10 112 13 114 4.88e-34 124
MS.gene016879.t1 MTR_1g085040 46.923 130 63 3 10 134 13 141 7.18e-34 126
MS.gene016879.t1 MTR_4g065017 43.056 144 75 3 10 147 18 160 8.72e-34 125
MS.gene016879.t1 MTR_1g100653 44.167 120 66 1 9 128 12 130 8.87e-34 124
MS.gene016879.t1 MTR_2g097910 46.970 132 63 3 10 135 21 151 8.94e-34 124
MS.gene016879.t1 MTR_7g076740 50.442 113 53 3 10 120 13 124 8.99e-34 124
MS.gene016879.t1 MTR_1g110460 36.932 176 81 4 10 156 27 201 1.85e-33 124
MS.gene016879.t1 MTR_8g017440 47.154 123 62 3 2 122 5 126 1.96e-33 124
MS.gene016879.t1 MTR_1g043050 45.669 127 65 2 10 136 13 135 2.18e-33 122
MS.gene016879.t1 MTR_1g085640 44.928 138 70 3 10 142 13 149 2.90e-33 125
MS.gene016879.t1 MTR_6g009430 48.718 117 58 2 9 124 12 127 4.12e-33 123
MS.gene016879.t1 MTR_4g105130 42.254 142 80 2 10 150 13 153 4.41e-33 124
MS.gene016879.t1 MTR_3g077110 50.000 116 56 2 10 124 13 127 5.40e-33 123
MS.gene016879.t1 MTR_1g112760 47.581 124 63 2 2 124 6 128 6.90e-33 120
MS.gene016879.t1 MTR_1g017140 55.140 107 46 2 7 112 10 115 7.31e-33 122
MS.gene016879.t1 MTR_0251s0050 40.845 142 74 3 10 150 14 146 1.10e-32 120
MS.gene016879.t1 MTR_5g079670 46.154 117 61 2 11 126 13 128 1.12e-32 119
MS.gene016879.t1 MTR_3g065440 49.573 117 57 2 10 125 13 128 1.77e-32 121
MS.gene016879.t1 MTR_2g099740 47.500 120 61 2 2 120 5 123 1.94e-32 123
MS.gene016879.t1 MTR_5g014990 54.206 107 47 2 7 112 10 115 2.01e-32 121
MS.gene016879.t1 MTR_5g078140 48.092 131 64 3 10 139 13 140 2.18e-32 121
MS.gene016879.t1 MTR_7g011170 47.414 116 59 2 10 124 13 127 3.36e-32 120
MS.gene016879.t1 MTR_0008s0390 49.541 109 51 2 10 118 14 118 3.55e-32 119
MS.gene016879.t1 MTR_4g097570 55.882 102 43 2 7 107 10 110 5.20e-32 119
MS.gene016879.t1 MTR_8g017500 46.903 113 58 2 9 120 12 123 5.93e-32 120
MS.gene016879.t1 MTR_1g073170 50.000 106 52 1 10 115 21 125 7.90e-32 118
MS.gene016879.t1 MTR_7g111290 55.102 98 43 1 10 107 13 109 7.94e-32 120
MS.gene016879.t1 MTR_1g086530 43.966 116 64 1 1 116 25 139 8.13e-32 118
MS.gene016879.t1 MTR_3g028740 51.456 103 49 1 10 112 23 124 8.14e-32 120
MS.gene016879.t1 MTR_2g095520 55.340 103 44 2 7 108 10 111 8.67e-32 119
MS.gene016879.t1 MTR_6g012690 45.238 126 67 2 10 134 13 137 9.77e-32 120
MS.gene016879.t1 MTR_8g031360 48.673 113 55 3 10 120 14 125 1.03e-31 119
MS.gene016879.t1 MTR_3g103570 52.336 107 49 2 7 112 10 115 1.18e-31 119
MS.gene016879.t1 MTR_8g017540 47.748 111 57 1 2 112 51 160 1.42e-31 120
MS.gene016879.t1 MTR_4g082290 43.382 136 73 3 10 142 13 147 1.56e-31 120
MS.gene016879.t1 MTR_7g096930 48.544 103 52 1 10 112 13 114 1.68e-31 117
MS.gene016879.t1 MTR_8g020490 49.533 107 52 2 11 116 10 115 2.05e-31 117
MS.gene016879.t1 MTR_4g121460 49.515 103 51 1 10 112 13 114 2.14e-31 119
MS.gene016879.t1 MTR_4g057635 53.333 105 47 2 9 112 12 115 2.32e-31 118
MS.gene016879.t1 MTR_2g089450 49.515 103 51 1 10 112 13 114 3.04e-31 116
MS.gene016879.t1 MTR_4g485530 46.847 111 57 2 11 120 14 123 3.37e-31 114
MS.gene016879.t1 MTR_0008s0470 48.624 109 52 2 10 118 14 118 5.02e-31 117
MS.gene016879.t1 MTR_4g102380 49.123 114 56 2 9 121 12 124 5.55e-31 116
MS.gene016879.t1 MTR_4g128670 53.398 103 46 2 7 108 10 111 5.60e-31 118
MS.gene016879.t1 MTR_4g029540 42.953 149 79 4 7 151 8 154 5.86e-31 117
MS.gene016879.t1 MTR_4g082230 42.647 136 74 3 10 142 13 147 6.86e-31 119
MS.gene016879.t1 MTR_5g042030 48.276 116 58 2 10 124 8 122 1.22e-30 115
MS.gene016879.t1 MTR_5g010020 50.000 100 49 1 9 108 12 110 1.33e-30 117
MS.gene016879.t1 MTR_7g102110 50.467 107 51 2 7 112 10 115 1.46e-30 115
MS.gene016879.t1 MTR_1g062940 50.485 103 50 1 10 112 7 108 1.68e-30 113
MS.gene016879.t1 MTR_4g097570 55.340 103 43 3 7 107 10 111 1.80e-30 115
MS.gene016879.t1 MTR_0063s0090 45.794 107 57 1 9 115 12 117 2.41e-30 113
MS.gene016879.t1 MTR_1g086510 45.370 108 58 1 9 116 21 127 2.94e-30 114
MS.gene016879.t1 MTR_8g098860 45.690 116 61 2 2 116 5 119 3.13e-30 115
MS.gene016879.t1 MTR_3g083540 42.975 121 67 2 5 124 37 156 3.82e-30 115
MS.gene016879.t1 MTR_0140s0030 48.598 107 53 2 10 115 14 119 4.76e-30 115
MS.gene016879.t1 MTR_0489s0020 48.598 107 53 2 10 115 14 119 4.76e-30 115
MS.gene016879.t1 MTR_1g045610 45.536 112 57 2 10 121 22 129 4.94e-30 113
MS.gene016879.t1 MTR_4g100720 47.959 98 50 1 11 108 15 111 5.08e-30 111
MS.gene016879.t1 MTR_3g039990 39.860 143 69 2 9 151 13 138 5.72e-30 114
MS.gene016879.t1 MTR_6g090405 48.571 105 52 2 9 112 12 115 1.11e-29 112
MS.gene016879.t1 MTR_8g027345 47.170 106 55 1 11 116 14 118 1.44e-29 113
MS.gene016879.t1 MTR_8g017340 47.107 121 61 3 2 120 5 124 1.75e-29 116
MS.gene016879.t1 MTR_4g063100 44.538 119 62 2 5 120 3 120 1.83e-29 112
MS.gene016879.t1 MTR_8g017390 48.571 105 52 2 9 112 12 115 3.44e-29 115
MS.gene016879.t1 MTR_6g012180 41.791 134 76 2 9 141 12 144 3.44e-29 112
MS.gene016879.t1 MTR_8g017350 46.281 121 62 3 2 120 5 124 4.75e-29 115
MS.gene016879.t1 MTR_2g067420 50.485 103 50 1 7 109 12 113 4.83e-29 112
MS.gene016879.t1 MTR_2g034790 48.544 103 52 1 10 112 13 114 4.98e-29 112
MS.gene016879.t1 MTR_7g010210 48.148 108 54 2 9 115 12 118 6.38e-29 110
MS.gene016879.t1 MTR_7g087130 49.533 107 52 2 10 115 13 118 6.85e-29 112
MS.gene016879.t1 MTR_4g125520 48.980 98 49 1 11 108 14 110 6.94e-29 111
MS.gene016879.t1 MTR_7g117730 46.939 98 51 1 11 108 14 110 7.58e-29 110
MS.gene016879.t1 MTR_2g089420 47.573 103 53 1 10 112 12 113 7.72e-29 114
MS.gene016879.t1 MTR_7g010210 48.148 108 54 2 9 115 12 118 8.48e-29 111
MS.gene016879.t1 MTR_8g006470 45.872 109 57 2 8 115 9 116 1.43e-28 110
MS.gene016879.t1 MTR_5g078910 47.573 103 53 1 10 112 8 109 1.69e-28 110
MS.gene016879.t1 MTR_7g109320 52.525 99 46 1 10 108 13 110 2.42e-28 111
MS.gene016879.t1 MTR_6g055910 46.296 108 57 1 10 117 15 121 5.51e-28 108
MS.gene016879.t1 MTR_2g033170 46.729 107 56 1 10 116 25 130 7.40e-28 109
MS.gene016879.t1 MTR_1g100667 44.954 109 59 1 10 118 14 121 8.53e-28 108
MS.gene016879.t1 MTR_5g079290 45.192 104 56 1 9 112 17 119 2.12e-27 106
MS.gene016879.t1 MTR_8g060940 44.231 104 57 1 5 108 3 105 3.79e-27 105
MS.gene016879.t1 MTR_7g017260 31.818 264 157 11 1 247 17 274 5.68e-27 105
MS.gene016879.t1 MTR_2g096380 46.154 104 55 1 9 112 6 108 6.98e-27 104
MS.gene016879.t1 MTR_5g079220 42.857 112 63 1 1 112 13 123 7.43e-27 105
MS.gene016879.t1 MTR_4g123040 45.794 107 57 1 10 116 25 130 1.09e-26 105
MS.gene016879.t1 MTR_0197s0010 46.465 99 52 1 14 112 6 103 1.23e-26 103
MS.gene016879.t1 MTR_3g101290 46.789 109 56 2 11 119 37 143 2.40e-26 103
MS.gene016879.t1 MTR_0247s0040 41.667 108 62 1 4 111 2 108 3.29e-26 101
MS.gene016879.t1 MTR_0193s0090 35.294 136 87 1 4 139 2 136 3.73e-26 102
MS.gene016879.t1 MTR_5g078950 44.660 103 56 1 9 111 7 108 4.41e-26 103
MS.gene016879.t1 MTR_5g078930 38.760 129 75 2 1 129 1 125 7.36e-26 101
MS.gene016879.t1 MTR_3g077650 44.737 114 59 3 11 122 181 292 1.02e-25 105
MS.gene016879.t1 MTR_5g016510 50.485 103 48 3 11 112 5 105 1.05e-25 103
MS.gene016879.t1 MTR_4g019370 48.624 109 49 4 11 118 38 140 1.43e-25 103
MS.gene016879.t1 MTR_5g079120 42.718 103 58 1 10 112 62 163 1.67e-25 102
MS.gene016879.t1 MTR_5g078860 45.631 103 55 1 10 112 8 109 1.87e-25 102
MS.gene016879.t1 MTR_0001s0360 43.269 104 58 1 9 112 7 109 2.72e-25 100
MS.gene016879.t1 MTR_7g035350 49.524 105 51 2 9 113 223 325 9.33e-25 102
MS.gene016879.t1 MTR_5g078800 44.660 103 56 1 10 112 8 109 1.03e-24 99.8
MS.gene016879.t1 MTR_5g049190 43.363 113 60 3 1 112 9 118 1.43e-24 98.6
MS.gene016879.t1 MTR_7g451170 47.059 102 52 2 11 112 191 290 1.90e-24 101
MS.gene016879.t1 MTR_3g463400 40.476 126 71 3 11 135 133 255 6.81e-24 100
MS.gene016879.t1 MTR_6g015455 50.000 98 45 3 11 107 5 99 8.43e-24 100
MS.gene016879.t1 MTR_4g105660 45.631 103 52 3 11 112 180 279 8.61e-24 99.8
MS.gene016879.t1 MTR_5g070020 43.363 113 60 3 5 116 116 225 8.92e-24 99.0
MS.gene016879.t1 MTR_6g074860 40.000 105 61 2 11 115 4 106 1.23e-23 96.3
MS.gene016879.t1 MTR_5g082910 48.980 98 48 2 11 108 19 114 1.37e-23 97.1
MS.gene016879.t1 MTR_7g037260 46.078 102 53 2 11 112 145 244 2.34e-23 97.8
MS.gene016879.t1 MTR_4g094982 49.515 103 49 3 11 112 5 105 2.50e-23 95.9
MS.gene016879.t1 MTR_5g010650 49.485 97 47 2 11 107 110 204 1.07e-22 97.1
MS.gene016879.t1 MTR_7g450950 40.708 113 65 2 4 116 150 260 1.11e-22 95.5
MS.gene016879.t1 MTR_6g027340 37.719 114 69 2 11 124 16 127 1.20e-22 92.8
MS.gene016879.t1 MTR_7g111290 56.716 67 28 1 41 107 2 67 3.38e-22 94.4
MS.gene016879.t1 MTR_1g057980 43.636 110 60 2 10 119 79 186 3.63e-22 93.6
MS.gene016879.t1 MTR_4g088015 44.118 102 55 2 11 112 221 320 3.73e-22 95.1
MS.gene016879.t1 MTR_7g037130 44.340 106 57 2 11 116 145 248 4.22e-22 94.4
MS.gene016879.t1 MTR_3g045430 37.097 124 76 2 2 124 6 128 4.66e-22 93.2
MS.gene016879.t1 MTR_4g063100 49.398 83 38 2 41 120 10 91 1.51e-21 90.1
MS.gene016879.t1 MTR_3g089045 42.735 117 59 4 2 112 4 118 3.42e-21 90.9
MS.gene016879.t1 MTR_6g027360 32.749 171 94 6 11 163 78 245 3.81e-21 90.9
MS.gene016879.t1 MTR_1g026870 41.176 102 58 2 11 112 85 184 6.46e-21 92.4
MS.gene016879.t1 MTR_1g026870 36.364 99 62 1 9 107 31 128 1.60e-14 73.6
MS.gene016879.t1 MTR_3g110028 41.176 102 58 2 11 112 85 184 8.02e-21 92.0
MS.gene016879.t1 MTR_3g110028 36.364 99 62 1 9 107 31 128 9.62e-15 74.3
MS.gene016879.t1 MTR_4g082040 42.342 111 57 4 6 112 100 207 4.14e-20 89.4
MS.gene016879.t1 MTR_5g041570 40.909 110 60 3 6 112 129 236 5.11e-20 89.0
MS.gene016879.t1 MTR_5g007300 45.679 81 44 0 3 83 58 138 6.95e-20 83.6
MS.gene016879.t1 MTR_2g096380 51.389 72 34 1 41 112 19 89 6.99e-20 85.5
MS.gene016879.t1 MTR_7g061550 32.927 164 85 4 11 172 7 147 8.07e-20 87.8
MS.gene016879.t1 MTR_7g061330 39.316 117 64 3 11 122 113 227 9.83e-20 88.6
MS.gene016879.t1 MTR_7g061330 36.082 97 61 1 11 107 61 156 1.69e-13 70.5
MS.gene016879.t1 MTR_7g461410 39.316 117 64 3 11 122 113 227 9.83e-20 88.6
MS.gene016879.t1 MTR_7g461410 36.082 97 61 1 11 107 61 156 1.69e-13 70.5
MS.gene016879.t1 MTR_7g061330 39.316 117 64 3 11 122 77 191 1.23e-19 88.2
MS.gene016879.t1 MTR_7g061330 36.082 97 61 1 11 107 25 120 1.60e-13 70.5
MS.gene016879.t1 MTR_6g055910 47.368 76 39 1 42 117 18 92 1.83e-19 85.1
MS.gene016879.t1 MTR_7g086960 43.689 103 56 2 6 108 84 184 2.42e-19 86.7
MS.gene016879.t1 MTR_6g027370 37.719 114 69 2 11 124 99 210 8.48e-18 82.0
MS.gene016879.t1 MTR_0023s0210 44.737 76 42 0 5 80 3 78 1.49e-17 75.9
MS.gene016879.t1 MTR_8g468380 34.314 102 65 2 14 115 25 124 3.42e-14 72.0
MS.gene016879.t1 MTR_5g038910 36.275 102 63 2 14 115 29 128 3.71e-14 72.0
MS.gene016879.t1 MTR_5g038910 36.275 102 63 2 14 115 29 128 6.60e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016879.t1 AT2G26960 45.570 158 73 2 11 156 22 178 9.20e-43 150
MS.gene016879.t1 AT2G32460 43.750 144 73 2 10 153 7 142 8.40e-40 144
MS.gene016879.t1 AT2G32460 43.750 144 73 2 10 153 19 154 8.88e-40 144
MS.gene016879.t1 AT5G55020 51.695 118 56 1 10 127 27 143 3.00e-39 143
MS.gene016879.t1 AT3G11440 51.667 120 57 1 10 129 42 160 1.18e-38 140
MS.gene016879.t1 AT5G06100 52.586 116 54 1 10 125 33 147 1.30e-38 140
MS.gene016879.t1 AT5G06100 52.586 116 54 1 10 125 33 147 3.18e-38 140
MS.gene016879.t1 AT5G06100 52.586 116 54 1 10 125 33 147 3.18e-38 140
MS.gene016879.t1 AT5G06100 52.586 116 54 1 10 125 33 147 3.18e-38 140
MS.gene016879.t1 AT5G06100 52.586 116 54 1 10 125 33 147 3.18e-38 140
MS.gene016879.t1 AT3G11440 51.667 120 57 1 10 129 42 160 3.78e-38 140
MS.gene016879.t1 AT3G11440 51.667 120 57 1 10 129 42 160 3.78e-38 140
MS.gene016879.t1 AT3G11440 51.667 120 57 1 10 129 42 160 3.78e-38 140
MS.gene016879.t1 AT4G38620 45.161 155 79 4 7 158 10 161 4.63e-38 135
MS.gene016879.t1 AT5G56110 52.137 117 54 2 9 124 12 127 9.62e-38 135
MS.gene016879.t1 AT2G26950 52.174 115 54 1 11 125 18 131 4.91e-37 135
MS.gene016879.t1 AT4G26930 49.558 113 56 1 10 122 20 131 5.01e-37 135
MS.gene016879.t1 AT4G09460 44.000 150 80 3 7 153 10 158 7.74e-37 130
MS.gene016879.t1 AT5G26660 50.407 123 59 2 10 131 13 134 9.50e-36 130
MS.gene016879.t1 AT3G12720 49.167 120 59 2 9 127 22 140 1.04e-35 129
MS.gene016879.t1 AT4G01680 45.270 148 73 4 1 141 1 147 1.05e-35 127
MS.gene016879.t1 AT1G35515 50.435 115 55 2 7 120 10 123 1.07e-35 127
MS.gene016879.t1 AT4G21440 52.679 112 51 2 10 120 13 123 2.30e-35 129
MS.gene016879.t1 AT3G27810 50.893 112 54 1 5 116 16 126 2.66e-35 126
MS.gene016879.t1 AT1G57560 45.455 143 72 3 10 147 13 154 2.74e-35 127
MS.gene016879.t1 AT5G54230 50.877 114 54 2 9 121 12 124 3.42e-35 128
MS.gene016879.t1 AT4G34990 46.377 138 70 3 8 144 11 145 6.11e-35 127
MS.gene016879.t1 AT1G22640 49.167 120 59 2 7 125 10 128 6.58e-35 126
MS.gene016879.t1 AT5G40350 51.887 106 50 1 7 112 15 119 7.31e-35 125
MS.gene016879.t1 AT1G09540 53.571 112 50 2 10 120 13 123 7.76e-35 129
MS.gene016879.t1 AT4G01680 47.059 136 67 3 10 141 13 147 9.16e-35 127
MS.gene016879.t1 AT3G61250 44.697 132 69 3 10 140 13 141 1.37e-34 126
MS.gene016879.t1 AT5G65230 48.438 128 64 2 3 129 6 132 1.37e-34 127
MS.gene016879.t1 AT5G10280 46.269 134 70 2 10 142 13 145 1.47e-34 127
MS.gene016879.t1 AT1G57560 52.586 116 53 2 10 124 13 127 1.49e-34 127
MS.gene016879.t1 AT4G28110 51.754 114 53 2 9 121 12 124 1.61e-34 125
MS.gene016879.t1 AT1G18570 49.138 116 57 2 10 124 14 128 2.08e-34 127
MS.gene016879.t1 AT4G05100 53.097 113 51 2 10 121 14 125 3.90e-34 125
MS.gene016879.t1 AT1G74080 49.138 116 57 2 10 124 13 127 6.46e-34 125
MS.gene016879.t1 AT5G16770 46.400 125 64 3 10 133 13 135 6.59e-34 125
MS.gene016879.t1 AT5G16770 46.400 125 64 3 10 133 13 135 6.59e-34 125
MS.gene016879.t1 AT5G16770 46.400 125 64 3 10 133 13 135 1.03e-33 125
MS.gene016879.t1 AT5G16770 46.400 125 64 3 10 133 13 135 1.03e-33 125
MS.gene016879.t1 AT3G23250 50.000 106 51 2 10 114 13 117 1.97e-33 123
MS.gene016879.t1 AT4G37780 51.786 112 50 3 9 117 12 122 2.16e-33 123
MS.gene016879.t1 AT3G49690 55.140 107 46 2 7 112 10 115 2.61e-33 123
MS.gene016879.t1 AT2G16720 49.123 114 56 2 8 120 11 123 3.17e-33 122
MS.gene016879.t1 AT5G61420 47.414 116 59 2 10 124 13 127 4.99e-33 124
MS.gene016879.t1 AT3G27920 51.456 103 49 1 10 112 15 116 5.11e-33 120
MS.gene016879.t1 AT5G15310 46.032 126 64 3 10 134 13 135 6.64e-33 120
MS.gene016879.t1 AT4G17785 45.865 133 67 3 9 137 13 144 6.76e-33 123
MS.gene016879.t1 AT4G17785 45.865 133 67 3 9 137 13 144 6.81e-33 123
MS.gene016879.t1 AT5G14750 42.446 139 74 3 10 145 17 152 7.95e-33 119
MS.gene016879.t1 AT3G01530 52.475 101 47 1 9 109 25 124 8.60e-33 119
MS.gene016879.t1 AT5G12870 52.336 107 50 1 10 116 19 124 1.28e-32 120
MS.gene016879.t1 AT3G02940 45.600 125 65 3 10 133 13 135 1.49e-32 121
MS.gene016879.t1 AT1G56160 50.962 104 50 1 9 112 14 116 1.53e-32 121
MS.gene016879.t1 AT5G15310 46.032 126 64 3 10 134 13 135 1.69e-32 121
MS.gene016879.t1 AT5G52600 43.885 139 67 3 7 135 10 147 1.71e-32 118
MS.gene016879.t1 AT3G13890 50.000 104 51 1 9 112 12 114 1.92e-32 122
MS.gene016879.t1 AT5G14340 41.026 156 75 4 10 164 25 164 2.05e-32 120
MS.gene016879.t1 AT5G15310 46.032 126 64 3 10 134 13 135 2.05e-32 121
MS.gene016879.t1 AT3G02940 45.600 125 65 3 10 133 13 135 2.75e-32 120
MS.gene016879.t1 AT3G02940 45.600 125 65 3 10 133 13 135 2.75e-32 120
MS.gene016879.t1 AT5G07690 48.276 116 58 2 10 124 13 127 2.76e-32 121
MS.gene016879.t1 AT3G01140 47.059 119 61 2 7 124 10 127 2.79e-32 121
MS.gene016879.t1 AT3G01140 47.059 119 61 2 7 124 53 170 2.80e-32 122
MS.gene016879.t1 AT5G65790 55.140 107 46 2 7 112 10 115 2.99e-32 122
MS.gene016879.t1 AT5G07700 47.414 116 59 2 10 124 13 127 3.32e-32 121
MS.gene016879.t1 AT5G07700 47.414 116 59 2 10 124 13 127 3.32e-32 121
MS.gene016879.t1 AT5G16600 47.692 130 64 3 10 138 13 139 3.69e-32 120
MS.gene016879.t1 AT5G40330 48.544 103 52 1 10 112 13 114 3.83e-32 118
MS.gene016879.t1 AT1G74430 41.085 129 72 3 10 137 13 138 4.00e-32 119
MS.gene016879.t1 AT3G08500 50.485 103 50 1 10 112 31 132 4.08e-32 121
MS.gene016879.t1 AT1G79180 42.759 145 75 3 9 146 14 157 5.00e-32 119
MS.gene016879.t1 AT1G16490 50.000 104 51 1 9 112 14 116 6.25e-32 119
MS.gene016879.t1 AT3G12820 48.649 111 55 2 7 116 12 121 6.35e-32 118
MS.gene016879.t1 AT3G28470 53.000 100 46 1 9 108 12 110 6.67e-32 120
MS.gene016879.t1 AT1G34670 49.558 113 55 2 10 121 13 124 1.60e-31 120
MS.gene016879.t1 AT4G01680 42.953 149 68 4 10 142 13 160 1.62e-31 119
MS.gene016879.t1 AT1G18710 42.982 114 63 2 10 122 13 125 1.71e-31 117
MS.gene016879.t1 AT3G13540 42.748 131 71 3 10 139 24 151 2.77e-31 116
MS.gene016879.t1 AT5G60890 46.552 116 60 2 10 124 13 127 3.17e-31 117
MS.gene016879.t1 AT1G66230 46.825 126 61 3 10 130 13 137 3.45e-31 117
MS.gene016879.t1 AT1G06180 50.485 103 50 1 10 112 13 114 3.70e-31 116
MS.gene016879.t1 AT1G25340 45.455 110 59 1 7 116 16 124 4.54e-31 117
MS.gene016879.t1 AT1G68320 45.794 107 57 1 10 116 20 125 5.26e-31 117
MS.gene016879.t1 AT2G31180 44.348 115 63 1 9 123 12 125 5.40e-31 115
MS.gene016879.t1 AT3G24310 50.000 106 52 1 10 115 19 123 5.50e-31 116
MS.gene016879.t1 AT4G22680 42.857 154 82 4 9 158 12 163 6.16e-31 116
MS.gene016879.t1 AT4G13480 50.943 106 51 1 10 115 7 111 7.02e-31 115
MS.gene016879.t1 AT5G57620 52.679 112 50 3 7 116 10 120 9.30e-31 117
MS.gene016879.t1 AT1G48000 47.170 106 55 1 10 115 33 137 1.12e-30 115
MS.gene016879.t1 AT2G47190 46.729 107 56 1 9 115 20 125 1.51e-30 115
MS.gene016879.t1 AT1G63910 47.826 115 58 2 2 115 5 118 1.59e-30 117
MS.gene016879.t1 AT2G36890 47.009 117 60 2 7 122 10 125 2.46e-30 115
MS.gene016879.t1 AT5G62320 49.580 119 51 3 10 120 14 131 2.53e-30 114
MS.gene016879.t1 AT3G30210 36.842 171 86 4 10 161 28 195 2.67e-30 114
MS.gene016879.t1 AT5G23000 52.381 105 48 2 9 112 12 115 3.56e-30 115
MS.gene016879.t1 AT2G36890 47.009 117 60 2 7 122 51 166 4.85e-30 115
MS.gene016879.t1 AT1G08810 49.533 107 52 2 10 115 13 118 7.63e-30 113
MS.gene016879.t1 AT1G74650 47.115 104 54 1 9 112 12 114 9.41e-30 114
MS.gene016879.t1 AT2G47460 49.524 105 51 2 10 113 13 116 1.17e-29 115
MS.gene016879.t1 AT3G28910 49.074 108 53 2 9 115 12 118 1.25e-29 114
MS.gene016879.t1 AT3G13890 46.018 113 51 2 9 112 12 123 1.78e-29 114
MS.gene016879.t1 AT3G62610 48.571 105 52 2 10 113 13 116 2.06e-29 114
MS.gene016879.t1 AT3G47600 48.148 108 54 2 9 115 12 118 2.52e-29 113
MS.gene016879.t1 AT5G59780 47.368 114 56 2 10 120 9 121 4.27e-29 110
MS.gene016879.t1 AT5G62470 48.148 108 54 2 9 115 12 118 5.72e-29 112
MS.gene016879.t1 AT5G49330 47.475 99 51 1 10 108 13 110 9.04e-29 112
MS.gene016879.t1 AT3G60460 46.296 108 56 2 9 115 11 117 1.32e-28 110
MS.gene016879.t1 AT3G46130 46.491 114 57 2 10 120 10 122 1.59e-28 109
MS.gene016879.t1 AT3G53200 48.544 103 52 1 10 112 10 111 6.76e-28 107
MS.gene016879.t1 AT5G35550 46.078 102 54 1 11 112 16 116 7.89e-28 107
MS.gene016879.t1 AT4G12350 47.788 113 57 2 9 120 12 123 8.99e-28 108
MS.gene016879.t1 AT5G62470 48.148 108 53 3 9 115 12 117 1.07e-27 109
MS.gene016879.t1 AT3G27785 44.248 113 61 2 4 116 182 292 7.42e-27 108
MS.gene016879.t1 AT1G25340 42.727 110 57 2 7 116 16 119 8.26e-27 105
MS.gene016879.t1 AT4G18770 49.020 102 50 2 11 112 217 316 8.57e-27 108
MS.gene016879.t1 AT1G25340 44.340 106 53 2 7 112 16 115 1.03e-26 105
MS.gene016879.t1 AT1G79180 35.393 178 74 4 9 146 14 190 1.07e-26 106
MS.gene016879.t1 AT5G40360 48.544 103 51 2 11 113 158 258 1.68e-26 106
MS.gene016879.t1 AT3G06490 47.664 107 55 1 10 116 20 125 2.48e-26 105
MS.gene016879.t1 AT3G48920 45.631 103 55 1 10 112 19 120 3.61e-26 103
MS.gene016879.t1 AT1G56650 39.844 128 67 2 4 122 3 129 4.46e-26 102
MS.gene016879.t1 AT5G52260 47.788 113 55 2 10 122 13 121 5.50e-26 103
MS.gene016879.t1 AT5G26660 50.549 91 43 2 42 131 14 103 5.94e-26 104
MS.gene016879.t1 AT4G25560 46.602 103 54 1 10 112 11 112 6.40e-26 103
MS.gene016879.t1 AT5G49620 45.370 108 58 1 9 116 26 132 1.54e-25 102
MS.gene016879.t1 AT1G66380 44.762 105 57 1 4 108 3 106 5.17e-25 97.1
MS.gene016879.t1 AT3G50060 45.872 109 57 2 11 119 6 112 8.27e-25 100
MS.gene016879.t1 AT1G66370 43.434 99 55 1 10 108 9 106 1.71e-24 98.6
MS.gene016879.t1 AT4G37260 47.273 110 55 3 11 119 13 120 3.25e-24 99.4
MS.gene016879.t1 AT1G66390 43.119 109 61 1 4 112 3 110 4.27e-24 97.8
MS.gene016879.t1 AT5G58850 47.706 109 53 3 5 112 99 204 4.79e-24 100
MS.gene016879.t1 AT5G49620 41.322 121 58 1 9 116 26 146 6.66e-24 98.6
MS.gene016879.t1 AT1G17950 31.980 197 119 7 11 201 5 192 6.74e-24 97.1
MS.gene016879.t1 AT2G23290 48.544 103 50 3 11 112 13 113 1.22e-23 97.8
MS.gene016879.t1 AT5G17800 38.129 139 81 3 11 146 93 229 1.24e-23 97.8
MS.gene016879.t1 AT5G67300 49.515 103 49 3 11 112 6 106 1.99e-23 97.1
MS.gene016879.t1 AT5G40350 53.425 73 33 1 40 112 3 74 4.88e-23 92.8
MS.gene016879.t1 AT3G27810 53.333 75 34 1 42 116 4 77 5.35e-23 92.8
MS.gene016879.t1 AT1G69560 41.905 105 59 2 4 108 116 218 1.96e-22 95.1
MS.gene016879.t1 AT5G11050 46.602 103 51 3 11 112 105 204 2.01e-22 95.9
MS.gene016879.t1 AT1G69560 41.905 105 59 2 4 108 100 202 2.09e-22 94.7
MS.gene016879.t1 AT3G09230 44.118 102 55 2 11 112 55 154 3.71e-22 94.7
MS.gene016879.t1 AT1G73410 36.905 168 86 6 11 164 6 167 4.02e-22 91.3
MS.gene016879.t1 AT2G25230 43.651 126 61 5 4 122 14 136 4.36e-22 92.0
MS.gene016879.t1 AT3G53200 56.338 71 30 1 42 112 9 78 7.22e-22 90.9
MS.gene016879.t1 AT2G39880 48.039 102 51 2 11 112 50 149 7.46e-22 93.6
MS.gene016879.t1 AT3G55730 45.098 102 54 2 11 112 56 155 7.65e-22 94.0
MS.gene016879.t1 AT1G73410 36.905 168 86 6 11 164 6 167 8.70e-22 91.3
MS.gene016879.t1 AT4G33450 40.566 106 58 3 10 112 18 121 1.24e-21 91.3
MS.gene016879.t1 AT4G32730 41.880 117 65 3 11 126 87 201 1.41e-21 94.4
MS.gene016879.t1 AT4G32730 33.962 106 69 1 2 107 26 130 7.79e-15 74.7
MS.gene016879.t1 AT4G32730 41.880 117 65 3 11 126 87 201 1.41e-21 94.4
MS.gene016879.t1 AT4G32730 33.962 106 69 1 2 107 26 130 7.79e-15 74.7
MS.gene016879.t1 AT4G32730 41.880 117 65 3 11 126 87 201 1.41e-21 94.4
MS.gene016879.t1 AT4G32730 33.962 106 69 1 2 107 26 130 7.79e-15 74.7
MS.gene016879.t1 AT4G32730 41.880 117 65 3 11 126 87 201 1.41e-21 94.4
MS.gene016879.t1 AT4G32730 33.962 106 69 1 2 107 26 130 7.79e-15 74.7
MS.gene016879.t1 AT4G32730 41.880 117 65 3 11 126 87 201 1.42e-21 94.4
MS.gene016879.t1 AT4G32730 33.962 106 69 1 2 107 26 130 8.90e-15 74.3
MS.gene016879.t1 AT3G09370 30.457 197 123 6 11 199 135 325 5.96e-21 92.0
MS.gene016879.t1 AT3G09370 38.144 97 59 1 11 107 83 178 1.18e-14 73.6
MS.gene016879.t1 AT3G09370 30.457 197 123 6 11 199 143 333 6.44e-21 92.0
MS.gene016879.t1 AT3G09370 38.144 97 59 1 11 107 91 186 1.35e-14 73.6
MS.gene016879.t1 AT3G12820 52.703 74 33 2 44 116 1 73 6.56e-21 87.8
MS.gene016879.t1 AT3G09370 30.457 197 123 6 11 199 130 320 6.85e-21 92.0
MS.gene016879.t1 AT3G09370 38.144 97 59 1 11 107 78 173 1.33e-14 73.6
MS.gene016879.t1 AT3G46130 50.000 84 38 2 40 120 8 90 1.08e-20 88.2
MS.gene016879.t1 AT1G26780 43.434 99 52 3 11 108 98 193 1.22e-20 89.0
MS.gene016879.t1 AT1G26780 41.905 105 56 3 11 112 98 200 1.73e-20 89.7
MS.gene016879.t1 AT5G59780 51.220 82 36 2 42 120 20 100 2.43e-20 86.7
MS.gene016879.t1 AT5G14750 39.048 105 58 3 44 145 17 118 3.30e-20 85.5
MS.gene016879.t1 AT5G11510 40.196 102 59 2 11 112 81 180 3.76e-20 90.1
MS.gene016879.t1 AT5G11510 33.962 106 69 1 2 107 20 124 1.24e-14 73.9
MS.gene016879.t1 AT5G11510 40.196 102 59 2 11 112 81 180 3.76e-20 90.1
MS.gene016879.t1 AT5G11510 33.962 106 69 1 2 107 20 124 1.24e-14 73.9
MS.gene016879.t1 AT5G11510 40.196 102 59 2 11 112 81 180 3.76e-20 90.1
MS.gene016879.t1 AT5G11510 33.962 106 69 1 2 107 20 124 1.24e-14 73.9
MS.gene016879.t1 AT3G46130 51.220 82 36 2 42 120 20 100 4.14e-20 86.7
MS.gene016879.t1 AT5G11510 40.196 102 59 2 11 112 81 180 4.37e-20 90.1
MS.gene016879.t1 AT5G11510 33.962 106 69 1 2 107 20 124 1.33e-14 73.9
MS.gene016879.t1 AT5G11510 40.196 102 59 2 11 112 81 180 4.75e-20 89.7
MS.gene016879.t1 AT5G11510 33.962 106 69 1 2 107 20 124 1.39e-14 73.6
MS.gene016879.t1 AT5G02320 41.905 105 58 3 11 114 127 229 5.48e-20 89.4
MS.gene016879.t1 AT5G02320 38.144 97 59 1 11 107 75 170 6.71e-15 74.3
MS.gene016879.t1 AT5G02320 41.905 105 58 3 11 114 127 229 5.48e-20 89.4
MS.gene016879.t1 AT5G02320 38.144 97 59 1 11 107 75 170 6.71e-15 74.3
MS.gene016879.t1 AT5G02320 41.905 105 58 3 11 114 67 169 6.63e-20 89.0
MS.gene016879.t1 AT5G02320 38.144 97 59 1 11 107 15 110 7.57e-15 74.3
MS.gene016879.t1 AT2G37630 40.984 122 68 3 11 130 4 123 4.26e-19 85.9
MS.gene016879.t1 AT3G29020 36.752 117 71 3 4 119 58 172 1.01e-18 82.8
MS.gene016879.t1 AT3G29020 36.752 117 71 3 4 119 60 174 1.21e-18 84.0
MS.gene016879.t1 AT5G35550 50.704 71 34 1 42 112 50 119 2.74e-18 82.4
MS.gene016879.t1 AT4G00540 40.909 110 59 4 10 115 102 209 2.76e-18 84.0
MS.gene016879.t1 AT4G00540 40.909 110 59 4 10 115 100 207 3.32e-18 84.0
MS.gene016879.t1 AT5G40430 39.669 121 63 5 3 117 41 157 4.16e-18 81.6
MS.gene016879.t1 AT3G47600 49.333 75 36 2 42 115 39 112 7.92e-18 82.0
MS.gene016879.t1 AT1G66380 50.000 68 33 1 41 108 7 73 4.76e-16 72.4
MS.gene016879.t1 AT1G66380 47.761 67 35 0 5 71 4 70 4.86e-16 72.4
MS.gene016879.t1 AT3G18100 39.796 98 57 2 9 106 544 639 3.47e-14 72.4
MS.gene016879.t1 AT3G18100 39.796 98 57 2 9 106 496 591 3.71e-14 72.4
MS.gene016879.t1 AT3G18100 39.796 98 57 2 9 106 383 478 4.77e-14 72.0
MS.gene016879.t1 AT3G18100 39.796 98 57 2 9 106 331 426 5.53e-14 72.0
MS.gene016879.t1 AT1G22640 46.479 71 36 2 56 125 2 71 5.58e-14 69.3
MS.gene016879.t1 AT1G14350 35.294 102 64 2 14 115 28 127 6.97e-14 71.2
MS.gene016879.t1 AT1G14350 35.294 102 64 2 14 115 28 127 6.97e-14 71.2
MS.gene016879.t1 AT2G02820 35.294 102 64 2 14 115 33 132 7.46e-14 71.2
MS.gene016879.t1 AT2G02820 35.294 102 64 2 14 115 33 132 9.12e-14 70.9
MS.gene016879.t1 AT2G02820 37.363 91 55 2 14 104 33 121 2.02e-13 69.3
MS.gene016879.t1 AT5G39700 36.364 99 61 2 10 108 55 151 6.05e-13 66.2
MS.gene016879.t1 AT1G71030 37.500 80 48 2 48 126 5 83 2.82e-11 61.2
MS.gene016879.t1 AT1G71030 37.500 80 48 2 48 126 19 97 4.13e-11 61.2
MS.gene016879.t1 AT5G14750 42.105 57 32 1 56 112 2 57 7.32e-11 59.3
MS.gene016879.t1 AT5G14750 42.105 57 32 1 56 112 2 57 7.32e-11 59.3

Find 50 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTTCATCTTCTTCTT+TGG 0.201233 5.2:+74596683 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5.2:-74596102 MS.gene016879:CDS
CCTACAACCAGATGTGAAAA+AGG 0.249095 5.2:-74596556 MS.gene016879:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5.2:-74595890 MS.gene016879:CDS
TCAGTATCATGGTGACTTTA+TGG 0.269513 5.2:-74595998 MS.gene016879:CDS
ATAATGACATCAAGAACTTT+TGG 0.308735 5.2:-74596308 MS.gene016879:CDS
AAAACCATGGAACAAGAAAT+TGG 0.347187 5.2:-74596647 MS.gene016879:CDS
ATGTCATTATCGCTTCTTCC+AGG 0.362883 5.2:+74596321 None:intergenic
AAACCTCCTTGATGACTTCA+TGG 0.396227 5.2:-74595923 MS.gene016879:CDS
CTTGTGAATCCTCAACTTGT+TGG 0.397071 5.2:+74596202 None:intergenic
CGTTCCAATTTCTTGTTCCA+TGG 0.405196 5.2:+74596643 None:intergenic
TCATCCGGTTCCATCTTGTC+AGG 0.436579 5.2:+74596240 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5.2:-74596025 MS.gene016879:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5.2:+74596045 None:intergenic
CTAATATTCAACTCATCATC+CGG 0.452546 5.2:+74596225 None:intergenic
TGAAATATTAAAAGCATATG+TGG 0.459693 5.2:-74596670 MS.gene016879:CDS
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5.2:+74596024 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5.2:-74596488 MS.gene016879:CDS
TGGAACTTCTCATATACCTA+TGG 0.477216 5.2:-74596082 MS.gene016879:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5.2:-74596054 MS.gene016879:CDS
GTCACCCTTCCCTGACAAGA+TGG 0.495250 5.2:-74596250 MS.gene016879:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.497716 5.2:-74596587 MS.gene016879:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5.2:-74595887 MS.gene016879:CDS
CGGTTCCATCTTGTCAGGGA+AGG 0.508810 5.2:+74596245 None:intergenic
CTTCCCTGACAAGATGGAAC+CGG 0.509188 5.2:-74596244 MS.gene016879:CDS
TTGGAGGACGATGTTGAAGC+CGG 0.528092 5.2:-74595871 MS.gene016879:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5.2:+74596015 None:intergenic
GAATATTAGCCAACAAGTTG+AGG 0.539286 5.2:-74596211 MS.gene016879:CDS
TCAAATGGTCTAAGCTGGCT+CGG 0.541526 5.2:-74596473 MS.gene016879:CDS
CAAATGGTCTAAGCTGGCTC+GGG 0.548784 5.2:-74596472 MS.gene016879:CDS
TGAATTCAAATGGTCTAAGC+TGG 0.550324 5.2:-74596478 MS.gene016879:CDS
CATCATGTCTTCATCATCAT+CGG 0.555000 5.2:-74596730 None:intergenic
ATGGTCTAAGCTGGCTCGGG+AGG 0.570116 5.2:-74596469 MS.gene016879:intron
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5.2:+74596057 None:intergenic
CCTATGGAGACTCAGTATCA+TGG 0.585538 5.2:-74596009 MS.gene016879:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5.2:+74596009 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5.2:+74596066 None:intergenic
ATGGATCCATGAAGTCATCA+AGG 0.595005 5.2:+74595917 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5.2:+74596051 None:intergenic
GGTTCCATCTTGTCAGGGAA+GGG 0.605286 5.2:+74596246 None:intergenic
AAAAGAAAACTTGAAAAGCG+TGG 0.617466 5.2:-74596276 MS.gene016879:CDS
CTGAAGTCAATACATAGACA+TGG 0.618549 5.2:+74595898 None:intergenic
AAAGCATATGTGGAAAACCA+TGG 0.619332 5.2:-74596660 MS.gene016879:CDS
CATCCGGTTCCATCTTGTCA+GGG 0.638065 5.2:+74596241 None:intergenic
GAGGACGATGTTGAAGCCGG+CGG 0.660817 5.2:-74595868 MS.gene016879:CDS
ACTGTCAAATAAACGACCGC+CGG 0.667707 5.2:+74595852 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5.2:+74596012 None:intergenic
AATGCGGGGCTTATACGTTG+CGG 0.693414 5.2:-74596609 MS.gene016879:CDS
GATCCATGAAGTCATCAAGG+AGG 0.752147 5.2:+74595920 None:intergenic
TGGAACAAGAAATTGGAACG+AGG 0.775000 5.2:-74596640 MS.gene016879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTAAATTTCAATTG+TGG + chr5.2:74596398-74596417 None:intergenic 15.0%
!! TAATATTTCATCTTCTTCTT+TGG + chr5.2:74595877-74595896 None:intergenic 20.0%
!! TTTATCTCATCAAAAATTGA+TGG + chr5.2:74596422-74596441 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG - chr5.2:74596441-74596460 MS.gene016879:intron 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG - chr5.2:74596442-74596461 MS.gene016879:intron 20.0%
!!! TGAAATATTAAAAGCATATG+TGG - chr5.2:74595887-74595906 MS.gene016879:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG - chr5.2:74596056-74596075 MS.gene016879:CDS 20.0%
! AACAAAATAATCAACACAAG+TGG + chr5.2:74596170-74596189 None:intergenic 25.0%
! CCTATACTAAAAAAGGAAAA+TGG - chr5.2:74595850-74595869 MS.gene016879:CDS 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG - chr5.2:74596069-74596088 MS.gene016879:CDS 25.0%
!! ATAATGACATCAAGAACTTT+TGG - chr5.2:74596249-74596268 MS.gene016879:CDS 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG - chr5.2:74596443-74596462 MS.gene016879:intron 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG - chr5.2:74596667-74596686 MS.gene016879:CDS 25.0%
!!! CCATTTTCCTTTTTTAGTAT+AGG + chr5.2:74595853-74595872 None:intergenic 25.0%
!!! GTTTTTTCTTCTTCACTAAA+TGG + chr5.2:74596029-74596048 None:intergenic 25.0%
AAAACCATGGAACAAGAAAT+TGG - chr5.2:74595910-74595929 MS.gene016879:CDS 30.0%
AAAAGAAAACTTGAAAAGCG+TGG - chr5.2:74596281-74596300 MS.gene016879:CDS 30.0%
CAAGTGGTGAATATTATAGA+AGG + chr5.2:74596154-74596173 None:intergenic 30.0%
CTAATATTCAACTCATCATC+CGG + chr5.2:74596335-74596354 None:intergenic 30.0%
! ACTTTATGGATCCAGATTTT+TGG - chr5.2:74596573-74596592 MS.gene016879:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG - chr5.2:74596670-74596689 MS.gene016879:CDS 30.0%
AAAGCATATGTGGAAAACCA+TGG - chr5.2:74595897-74595916 MS.gene016879:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG - chr5.2:74596002-74596021 MS.gene016879:CDS 35.0%
CTGAAGTCAATACATAGACA+TGG + chr5.2:74596662-74596681 None:intergenic 35.0%
CTGTTGTGAAACCAAAAATC+TGG + chr5.2:74596587-74596606 None:intergenic 35.0%
GAATATTAGCCAACAAGTTG+AGG - chr5.2:74596346-74596365 MS.gene016879:intron 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG - chr5.2:74595970-74595989 MS.gene016879:CDS 35.0%
TCAGTATCATGGTGACTTTA+TGG - chr5.2:74596559-74596578 MS.gene016879:CDS 35.0%
TCATCGGCCTATACTAAAAA+AGG - chr5.2:74595843-74595862 MS.gene016879:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG - chr5.2:74596079-74596098 MS.gene016879:CDS 35.0%
TGGAACTTCTCATATACCTA+TGG - chr5.2:74596475-74596494 MS.gene016879:CDS 35.0%
! AACGAGGTATCAAAAAATGC+GGG - chr5.2:74595933-74595952 MS.gene016879:CDS 35.0%
! GAACGAGGTATCAAAAAATG+CGG - chr5.2:74595932-74595951 MS.gene016879:CDS 35.0%
! TTCTTTTTGTGTCAGTTACC+TGG - chr5.2:74596218-74596237 MS.gene016879:CDS 35.0%
ATGGATCCATGAAGTCATCA+AGG + chr5.2:74596643-74596662 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+AGG + chr5.2:74596239-74596258 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG - chr5.2:74596001-74596020 MS.gene016879:CDS 40.0%
CGTTCCAATTTCTTGTTCCA+TGG + chr5.2:74595917-74595936 None:intergenic 40.0%
CTTGTGAATCCTCAACTTGT+TGG + chr5.2:74596358-74596377 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG - chr5.2:74596455-74596474 MS.gene016879:intron 40.0%
TGGAACAAGAAATTGGAACG+AGG - chr5.2:74595917-74595936 MS.gene016879:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG - chr5.2:74596634-74596653 MS.gene016879:CDS 40.0%
! ACGAGGTATCAAAAAATGCG+GGG - chr5.2:74595934-74595953 MS.gene016879:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG + chr5.2:74596011-74596030 None:intergenic 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG + chr5.2:74596004-74596023 None:intergenic 40.0%
ACTGTCAAATAAACGACCGC+CGG + chr5.2:74596708-74596727 None:intergenic 45.0%
AGCATCATAGGTGAAGGAAG+TGG + chr5.2:74596503-74596522 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG + chr5.2:74596551-74596570 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG - chr5.2:74596548-74596567 MS.gene016879:CDS 45.0%
CTTCCTTCACCTATGATGCT+TGG - chr5.2:74596503-74596522 MS.gene016879:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG + chr5.2:74596640-74596659 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG + chr5.2:74596515-74596534 None:intergenic 45.0%
TCAAATGGTCTAAGCTGGCT+CGG - chr5.2:74596084-74596103 MS.gene016879:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG + chr5.2:74596509-74596528 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG - chr5.2:74596532-74596551 MS.gene016879:CDS 45.0%
TGATACTGAGTCTCCATAGG+TGG + chr5.2:74596548-74596567 None:intergenic 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG + chr5.2:74596536-74596555 None:intergenic 45.0%
AATGCGGGGCTTATACGTTG+CGG - chr5.2:74595948-74595967 MS.gene016879:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG + chr5.2:74596319-74596338 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG - chr5.2:74596313-74596332 MS.gene016879:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG + chr5.2:74596314-74596333 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG + chr5.2:74596545-74596564 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG + chr5.2:74596320-74596339 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG - chr5.2:74596686-74596705 MS.gene016879:CDS 50.0%
! CAAATGGTCTAAGCTGGCTC+GGG - chr5.2:74596085-74596104 MS.gene016879:CDS 50.0%
CGGTTCCATCTTGTCAGGGA+AGG + chr5.2:74596315-74596334 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG + chr5.2:74596494-74596513 None:intergenic 55.0%
GTCACCCTTCCCTGACAAGA+TGG - chr5.2:74596307-74596326 MS.gene016879:CDS 55.0%
GAGGACGATGTTGAAGCCGG+CGG - chr5.2:74596689-74596708 MS.gene016879:CDS 60.0%
!! ATGGTCTAAGCTGGCTCGGG+AGG - chr5.2:74596088-74596107 MS.gene016879:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 74595831 74596748 74595831 ID=MS.gene016879
chr5.2 mRNA 74595831 74596748 74595831 ID=MS.gene016879.t1;Parent=MS.gene016879
chr5.2 exon 74596470 74596748 74596470 ID=MS.gene016879.t1.exon1;Parent=MS.gene016879.t1
chr5.2 CDS 74596470 74596748 74596470 ID=cds.MS.gene016879.t1;Parent=MS.gene016879.t1
chr5.2 exon 74595831 74596346 74595831 ID=MS.gene016879.t1.exon2;Parent=MS.gene016879.t1
chr5.2 CDS 74595831 74596346 74595831 ID=cds.MS.gene016879.t1;Parent=MS.gene016879.t1
Gene Sequence

>MS.gene016879

ATGTCTTCATCATCATCGGCCTATACTAAAAAAGGAAAATGGTCCAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAACCATGGAACAAGAAATTGGAACGAGGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAACAAAAGTTTTTGAGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTCGGGAGGTAATTTCTTTTACTTTCTTTAATTTGAAATATTGATCTATCCTTCTATAATATTCACCACTTGTGTTGATTATTTTGTTGATCATGTCATTATATAATTTGTATTTGTTCTTTTTGTGTCAGTTACCTGGAAGAAGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAAAGAAAACTTGAAAAGCGTGGCTTGTCACCCTTCCCTGACAAGATGGAACCGGATGATGAGTTGAATATTAGCCAACAAGTTGAGGATTCACAAGATGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGACTTTATGGATCCAGATTTTTGGTTTCACAACAGTTCATTAGACACTAACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAGTAACTTGCATGACAAGATATAA
Protein sequence

>MS.gene016879.t1

MSSSSSAYTKKGKWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKTKVFEFYKKYGEFKWSKLARELPGRSDNDIKNFWNARKRKLEKRGLSPFPDKMEPDDELNISQQVEDSQDDEFNIPQLKFRKYPSIFDEINEKLLDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGDFMDPDFWFHNSSLDTNDAEANLLDDFMDPCLCIDFSNLEDDVEAGGRLFDSNLHDKI