Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016887.t1 | XP_024640889.1 | 98.1 | 258 | 5 | 0 | 1 | 258 | 6 | 263 | 4.40E-114 | 422.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016887.t1 | Q9LES3 | 36.1 | 294 | 149 | 9 | 1 | 258 | 1 | 291 | 7.4e-25 | 117.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016887.t1 | G7K7P6 | 98.1 | 258 | 5 | 0 | 1 | 258 | 1 | 258 | 3.2e-114 | 422.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene016887.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016887.t1 | MTR_5g088230 | 98.062 | 258 | 5 | 0 | 1 | 258 | 6 | 263 | 0.0 | 518 |
MS.gene016887.t1 | MTR_5g088230 | 98.062 | 258 | 5 | 0 | 1 | 258 | 1 | 258 | 0.0 | 517 |
MS.gene016887.t1 | MTR_8g043960 | 45.205 | 292 | 110 | 7 | 13 | 258 | 20 | 307 | 6.60e-59 | 200 |
MS.gene016887.t1 | MTR_3g010660 | 41.066 | 319 | 124 | 8 | 1 | 258 | 1 | 316 | 1.09e-58 | 200 |
MS.gene016887.t1 | MTR_6g026800 | 38.170 | 317 | 135 | 7 | 1 | 258 | 1 | 315 | 4.49e-38 | 144 |
MS.gene016887.t1 | MTR_7g088090 | 43.750 | 144 | 62 | 5 | 1 | 135 | 1 | 134 | 1.42e-22 | 99.4 |
MS.gene016887.t1 | MTR_7g088090 | 46.457 | 127 | 61 | 3 | 133 | 258 | 194 | 314 | 3.85e-19 | 89.4 |
MS.gene016887.t1 | MTR_3g101780 | 46.721 | 122 | 55 | 3 | 17 | 135 | 27 | 141 | 2.69e-21 | 97.4 |
MS.gene016887.t1 | MTR_3g101780 | 47.126 | 87 | 43 | 1 | 180 | 263 | 339 | 425 | 7.58e-12 | 68.2 |
MS.gene016887.t1 | MTR_2g086390 | 31.373 | 255 | 141 | 9 | 12 | 236 | 3 | 253 | 5.77e-19 | 88.2 |
MS.gene016887.t1 | MTR_4g085910 | 41.732 | 127 | 59 | 4 | 17 | 135 | 18 | 137 | 6.66e-19 | 89.4 |
MS.gene016887.t1 | MTR_2g086390 | 31.373 | 255 | 141 | 9 | 12 | 236 | 3 | 253 | 1.88e-18 | 86.7 |
MS.gene016887.t1 | MTR_7g104480 | 36.154 | 130 | 65 | 2 | 24 | 135 | 46 | 175 | 1.34e-13 | 73.6 |
MS.gene016887.t1 | MTR_4g094390 | 39.344 | 122 | 54 | 3 | 120 | 238 | 71 | 175 | 1.73e-11 | 64.3 |
MS.gene016887.t1 | MTR_1g098590 | 33.679 | 193 | 99 | 6 | 69 | 238 | 21 | 207 | 9.04e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016887.t1 | AT3G56850 | 42.446 | 278 | 122 | 8 | 17 | 258 | 16 | 291 | 2.09e-48 | 172 |
MS.gene016887.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 16 | 256 | 6.63e-46 | 164 |
MS.gene016887.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 16 | 256 | 6.63e-46 | 164 |
MS.gene016887.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 16 | 256 | 6.63e-46 | 164 |
MS.gene016887.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 25 | 265 | 9.42e-46 | 164 |
MS.gene016887.t1 | AT2G41070 | 41.350 | 237 | 108 | 6 | 17 | 238 | 16 | 236 | 4.71e-39 | 144 |
MS.gene016887.t1 | AT1G49720 | 42.188 | 128 | 65 | 1 | 17 | 135 | 23 | 150 | 1.04e-22 | 101 |
MS.gene016887.t1 | AT1G49720 | 42.188 | 128 | 65 | 1 | 17 | 135 | 23 | 150 | 1.17e-22 | 101 |
MS.gene016887.t1 | AT1G49720 | 42.188 | 128 | 65 | 1 | 17 | 135 | 23 | 150 | 1.17e-22 | 101 |
MS.gene016887.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 1.64e-20 | 95.5 |
MS.gene016887.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 3.48e-20 | 94.4 |
MS.gene016887.t1 | AT4G34000 | 36.434 | 129 | 55 | 3 | 141 | 263 | 341 | 448 | 5.78e-11 | 65.5 |
MS.gene016887.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 3.48e-20 | 94.4 |
MS.gene016887.t1 | AT4G34000 | 36.434 | 129 | 55 | 3 | 141 | 263 | 341 | 448 | 5.78e-11 | 65.5 |
MS.gene016887.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 3.48e-20 | 94.4 |
MS.gene016887.t1 | AT4G34000 | 36.434 | 129 | 55 | 3 | 141 | 263 | 341 | 448 | 5.78e-11 | 65.5 |
MS.gene016887.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 4.74e-18 | 87.4 |
MS.gene016887.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 5.20e-18 | 87.4 |
MS.gene016887.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 8.76e-18 | 86.7 |
MS.gene016887.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 8.86e-18 | 86.7 |
MS.gene016887.t1 | AT3G19290 | 40.741 | 108 | 58 | 3 | 160 | 263 | 320 | 425 | 7.19e-11 | 65.1 |
MS.gene016887.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 8.86e-18 | 86.7 |
MS.gene016887.t1 | AT3G19290 | 40.741 | 108 | 58 | 3 | 160 | 263 | 320 | 425 | 7.19e-11 | 65.1 |
MS.gene016887.t1 | AT3G44460 | 33.333 | 261 | 125 | 7 | 19 | 236 | 37 | 291 | 1.47e-17 | 84.7 |
MS.gene016887.t1 | AT1G03970 | 40.000 | 170 | 65 | 6 | 89 | 239 | 83 | 234 | 2.11e-16 | 80.5 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 1.70e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 1.70e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 1.70e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 1.70e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 1.74e-15 | 79.0 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 1.74e-15 | 79.0 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.32e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 37.500 | 152 | 80 | 4 | 119 | 258 | 262 | 410 | 4.23e-11 | 65.9 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 36 | 165 | 2.53e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 37.500 | 152 | 80 | 4 | 119 | 258 | 277 | 425 | 4.09e-11 | 65.9 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 36 | 165 | 2.53e-15 | 79.3 |
MS.gene016887.t1 | AT1G45249 | 37.500 | 152 | 80 | 4 | 119 | 258 | 277 | 425 | 4.09e-11 | 65.9 |
MS.gene016887.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 3.47e-15 | 78.6 |
MS.gene016887.t1 | AT2G17770 | 30.233 | 172 | 94 | 5 | 93 | 239 | 1 | 171 | 4.26e-12 | 65.9 |
MS.gene016887.t1 | AT2G36270 | 44.211 | 95 | 43 | 2 | 179 | 263 | 342 | 436 | 3.01e-11 | 66.6 |
MS.gene016887.t1 | AT2G36270 | 44.211 | 95 | 43 | 2 | 179 | 263 | 342 | 436 | 3.01e-11 | 66.6 |
Find 154 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATCTGTGGATCCTTCTA+TGG | 0.202139 | 5.2:+74707024 | MS.gene016887:CDS |
ACATCAAGCTTTGGGGAATT+TGG | 0.203400 | 5.2:-74706548 | None:intergenic |
GCTTAATATGGCAGTTTCTT+TGG | 0.228630 | 5.2:+74703903 | MS.gene016887:CDS |
ATACTAACTTCAGTGTTTAT+AGG | 0.252607 | 5.2:-74703952 | None:intergenic |
AATAGTCTACTAGGAGATTT+GGG | 0.275351 | 5.2:+74696737 | MS.gene016887:CDS |
TAATAGTCTACTAGGAGATT+TGG | 0.281034 | 5.2:+74696736 | MS.gene016887:CDS |
CCTTGGTAACCAGTTCATTA+TGG | 0.284719 | 5.2:-74697414 | None:intergenic |
GAAGAATCAGCTGTTGGTTC+TGG | 0.289068 | 5.2:+74707443 | MS.gene016887:CDS |
ACTCTTCGAAGACGGTATTT+AGG | 0.289336 | 5.2:-74699949 | None:intergenic |
TTAGGTTCAGGTGATGATTC+AGG | 0.303409 | 5.2:-74699931 | None:intergenic |
CGAAGACGGTATTTAGGTTC+AGG | 0.343807 | 5.2:-74699943 | None:intergenic |
AGAAAACACTCTATCCATTT+GGG | 0.349870 | 5.2:-74707358 | None:intergenic |
GTGGCGGGACATCAAGCTTT+GGG | 0.351760 | 5.2:-74706556 | None:intergenic |
CAGAAAACACTCTATCCATT+TGG | 0.352324 | 5.2:-74707359 | None:intergenic |
TGGGCAACAGTCTCATTTAC+AGG | 0.354570 | 5.2:+74696661 | MS.gene016887:CDS |
AAAGATGCAAAAGCTTAATA+TGG | 0.360364 | 5.2:+74703891 | MS.gene016887:CDS |
AAAGTTACTACTTCTGTTAG+TGG | 0.362698 | 5.2:+74706917 | MS.gene016887:CDS |
TTTCTTGAGGCACTAGGTGC+TGG | 0.368041 | 5.2:+74706683 | MS.gene016887:CDS |
AAGGATAAAACAGATTTGTT+AGG | 0.383840 | 5.2:+74707109 | MS.gene016887:CDS |
GCTGAAGGAAATAAGGTTGT+AGG | 0.386567 | 5.2:+74696812 | MS.gene016887:CDS |
TTCTTCAATTAGTAGTTTGT+CGG | 0.387734 | 5.2:+74697144 | MS.gene016887:CDS |
GGAGATTTGGGGAAGCCGTT+AGG | 0.390252 | 5.2:+74696749 | MS.gene016887:CDS |
GAAAGTTGAGGATAGGGAAA+TGG | 0.390564 | 5.2:+74696979 | MS.gene016887:CDS |
TGAGAAGGAAAATCAAGAAT+AGG | 0.395993 | 5.2:+74697230 | MS.gene016887:CDS |
CGACGAGGGTAAAGGATTGC+TGG | 0.397260 | 5.2:+74701895 | MS.gene016887:CDS |
CCTTGCACAGGAGTTTGAGC+AGG | 0.397902 | 5.2:+74699900 | MS.gene016887:intron |
ACTGCTGTAGATTCTTCTCT+TGG | 0.405726 | 5.2:+74706743 | MS.gene016887:CDS |
CTAGGTCAGAAGAAACAATA+TGG | 0.406097 | 5.2:+74696947 | MS.gene016887:CDS |
TACTATAAGCTTGGGAGAAA+AGG | 0.410945 | 5.2:-74707132 | None:intergenic |
CAATGGGTTCTCAAAGTAAT+GGG | 0.413643 | 5.2:+74696642 | None:intergenic |
AGTTAGTTAAGCAAAATTCA+TGG | 0.414879 | 5.2:+74696690 | MS.gene016887:CDS |
ATTGTTTCTTCTGACCTAGC+TGG | 0.422038 | 5.2:-74696943 | None:intergenic |
TGCAAAACCAGGTCGCAAAA+AGG | 0.425790 | 5.2:+74697168 | MS.gene016887:CDS |
GAGAAGGAAAATCAAGAATA+GGG | 0.428756 | 5.2:+74697231 | MS.gene016887:CDS |
GCCATCAGAAGCACCAGCTT+TGG | 0.430835 | 5.2:-74706960 | None:intergenic |
GCGTTCACGTGCAAGAAAAC+AGG | 0.432338 | 5.2:+74697264 | MS.gene016887:CDS |
AAGAATGGAGCTTCTATTGC+CGG | 0.433861 | 5.2:-74701834 | None:intergenic |
GGATGCATATGAGAAGGCTT+TGG | 0.435212 | 5.2:+74697198 | MS.gene016887:CDS |
GGAGAGCCACACTCTATAAC+AGG | 0.438164 | 5.2:+74703866 | MS.gene016887:intron |
GTGGACTGCTGAAGGAAATA+AGG | 0.439159 | 5.2:+74696805 | MS.gene016887:CDS |
TAAGATTGATACTATAAGCT+TGG | 0.441084 | 5.2:-74707141 | None:intergenic |
GAGGAACCTGAGTCGGCAAT+TGG | 0.441553 | 5.2:+74707489 | MS.gene016887:CDS |
AAGATTGATACTATAAGCTT+GGG | 0.443694 | 5.2:-74707140 | None:intergenic |
TTAATAACACAACCCATAGA+AGG | 0.450641 | 5.2:-74707037 | None:intergenic |
AAAGTTGAGGATAGGGAAAT+GGG | 0.453635 | 5.2:+74696980 | MS.gene016887:CDS |
CGCTTGCATGGTGTCTGCTC+CGG | 0.454652 | 5.2:+74701815 | MS.gene016887:CDS |
TTGGGAAGGTTGTTGAGTGC+AGG | 0.457516 | 5.2:+74707382 | MS.gene016887:CDS |
TAATTTGATGCAGCCCCAAA+TGG | 0.460289 | 5.2:+74707344 | MS.gene016887:CDS |
AGTGGCGGGACATCAAGCTT+TGG | 0.460408 | 5.2:-74706557 | None:intergenic |
GAGATTTGGGGAAGCCGTTA+GGG | 0.461727 | 5.2:+74696750 | MS.gene016887:CDS |
CGATGTGAAAGTTGAGGATA+GGG | 0.461810 | 5.2:+74696973 | MS.gene016887:CDS |
TGTAGGGATGGAGAGTGAGC+AGG | 0.463391 | 5.2:+74696829 | MS.gene016887:CDS |
AGACACCATGCAAGCGGCGA+AGG | 0.466308 | 5.2:-74701808 | None:intergenic |
TGCTGAAATCGAGCGAAGAA+TGG | 0.469267 | 5.2:-74701849 | None:intergenic |
GTTAAGCAAAATTCATGGTA+TGG | 0.470540 | 5.2:+74696695 | MS.gene016887:CDS |
TAGTTGATCAAGTGAACAAC+GGG | 0.471866 | 5.2:+74703980 | MS.gene016887:CDS |
AAAGTCGTTGCTTCTGTTGG+TGG | 0.477361 | 5.2:+74706872 | MS.gene016887:CDS |
CTTGCACAGGAGTTTGAGCA+GGG | 0.484759 | 5.2:+74699901 | MS.gene016887:intron |
TGATTGTAGAGCAAGGCGTT+TGG | 0.485204 | 5.2:-74706798 | None:intergenic |
GCTAAATACGACGCTTCTGC+TGG | 0.488866 | 5.2:+74706842 | MS.gene016887:CDS |
GGAAGACGGTGGATGATGTA+TGG | 0.489215 | 5.2:+74696912 | MS.gene016887:CDS |
CCAGATCTTTCTGTTGAACC+AGG | 0.490018 | 5.2:+74707067 | MS.gene016887:CDS |
TATTAGTCCGACGGTGGGGT+TGG | 0.490449 | 5.2:+74697063 | MS.gene016887:CDS |
CACACCCTTCGCCGCTTGCA+TGG | 0.496820 | 5.2:+74701803 | MS.gene016887:CDS |
GGGTCTCGGTGGTACGACTT+TGG | 0.498535 | 5.2:+74697000 | MS.gene016887:CDS |
ACGATGTGAAAGTTGAGGAT+AGG | 0.500216 | 5.2:+74696972 | MS.gene016887:CDS |
ACAATGGGTTCTCAAAGTAA+TGG | 0.500285 | 5.2:+74696641 | None:intergenic |
CTTTCTCCTGTTATAGAGTG+TGG | 0.507970 | 5.2:-74703872 | None:intergenic |
ATCGTCTTCTCTTCAACGGC+AGG | 0.510272 | 5.2:+74696859 | MS.gene016887:CDS |
GCTTCTATTAGTCCGACGGT+GGG | 0.511307 | 5.2:+74697058 | MS.gene016887:CDS |
CAAACTACTAATTGAAGAAG+AGG | 0.512419 | 5.2:-74697140 | None:intergenic |
GACGGTGGGGTTGGATGCAA+TGG | 0.513361 | 5.2:+74697072 | MS.gene016887:CDS |
GCGCCTTTCGTAACACAACC+TGG | 0.513475 | 5.2:-74707085 | None:intergenic |
CTGTTCTAGCAGAGTAACCT+TGG | 0.515075 | 5.2:-74697431 | None:intergenic |
CTTTCAACCGAAAACAAGCT+TGG | 0.516273 | 5.2:+74697114 | MS.gene016887:CDS |
ACTTCAGTGTTTATAGGCCA+TGG | 0.516872 | 5.2:-74703946 | None:intergenic |
CTGAAGGAAATAAGGTTGTA+GGG | 0.518539 | 5.2:+74696813 | MS.gene016887:CDS |
CCTGAGTCGGCAATTGGAAT+CGG | 0.519941 | 5.2:+74707495 | MS.gene016887:CDS |
AGTTTGTCGGATGCAAAACC+AGG | 0.520172 | 5.2:+74697157 | MS.gene016887:CDS |
TGCATCAAATTAATCACCTC+AGG | 0.520470 | 5.2:-74707333 | None:intergenic |
GCAGGCTTACCATAATGAAC+TGG | 0.521206 | 5.2:+74697405 | MS.gene016887:intron |
AGGAAATAAGGTTGTAGGGA+TGG | 0.523139 | 5.2:+74696817 | MS.gene016887:CDS |
CCTGGTTCAACAGAAAGATC+TGG | 0.524750 | 5.2:-74707067 | None:intergenic |
CCCTCGTCGCTGCTAGTGCA+TGG | 0.525304 | 5.2:-74701881 | None:intergenic |
CGTCATCGTCTTCTCTTCAA+CGG | 0.525850 | 5.2:+74696855 | MS.gene016887:CDS |
CTTTGGAAAGGAGGCTGAGA+AGG | 0.527338 | 5.2:+74697215 | MS.gene016887:CDS |
GAGGATAGGGAAATGGGTCT+CGG | 0.530192 | 5.2:+74696986 | MS.gene016887:CDS |
AGAAGCATGGGAGGACCTCA+AGG | 0.533370 | 5.2:+74707296 | MS.gene016887:CDS |
CCGATTCCAATTGCCGACTC+AGG | 0.534994 | 5.2:-74707495 | None:intergenic |
AGATTTGAAGAATCAGCTGT+TGG | 0.535356 | 5.2:+74707437 | MS.gene016887:CDS |
AAATCATTCACGGATATAAG+TGG | 0.538546 | 5.2:-74706575 | None:intergenic |
ACTAGCAGCGACGAGGGTAA+AGG | 0.539010 | 5.2:+74701887 | MS.gene016887:CDS |
AAGTCGTTGCTTCTGTTGGT+GGG | 0.542109 | 5.2:+74706873 | MS.gene016887:CDS |
GATTCTTCTCTTGGAACAAG+TGG | 0.543209 | 5.2:+74706752 | MS.gene016887:CDS |
AAATCTGTGGATCCTTCTAT+GGG | 0.548338 | 5.2:+74707025 | MS.gene016887:CDS |
AGTAAAGTCGTTGCTTCTGT+TGG | 0.548366 | 5.2:+74706869 | MS.gene016887:CDS |
GATGAGGTTAATAGTCTACT+AGG | 0.549320 | 5.2:+74696728 | MS.gene016887:CDS |
GAATAAGACAACTGCCATTG+AGG | 0.549728 | 5.2:-74706622 | None:intergenic |
GAGTTAGGCTACTTCCTCAA+TGG | 0.552454 | 5.2:+74706608 | MS.gene016887:CDS |
ACCAAAGCTGGTGCTTCTGA+TGG | 0.553368 | 5.2:+74706959 | MS.gene016887:CDS |
TAAGGAAATCAAAGAAGCAT+GGG | 0.556914 | 5.2:+74707284 | MS.gene016887:CDS |
CAGAATGTGTGGACTGCTGA+AGG | 0.557306 | 5.2:+74696797 | MS.gene016887:CDS |
TCTTCTCTTGGAACAAGTGG+TGG | 0.557408 | 5.2:+74706755 | MS.gene016887:CDS |
AACAATAACCTTCACTTGTG+CGG | 0.565346 | 5.2:-74701932 | None:intergenic |
GACACCATGCAAGCGGCGAA+GGG | 0.566593 | 5.2:-74701807 | None:intergenic |
ATGAGAAGGCTTTGGAAAGG+AGG | 0.572932 | 5.2:+74697206 | MS.gene016887:CDS |
TTAAGGAAATCAAAGAAGCA+TGG | 0.573247 | 5.2:+74707283 | MS.gene016887:CDS |
TGGAGACGATGTGAAAGTTG+AGG | 0.573499 | 5.2:+74696967 | MS.gene016887:CDS |
TGGGAAGGTTGTTGAGTGCA+GGG | 0.575987 | 5.2:+74707383 | MS.gene016887:CDS |
TGGAGCTTCTATTAGTCCGA+CGG | 0.576977 | 5.2:+74697054 | MS.gene016887:CDS |
AGCTTCTATTAGTCCGACGG+TGG | 0.577860 | 5.2:+74697057 | MS.gene016887:CDS |
ACGAGCTTCTTCAGAATGTG+TGG | 0.579972 | 5.2:+74696786 | MS.gene016887:CDS |
TGATAACTAACCACAGGTAA+CGG | 0.581754 | 5.2:-74704010 | None:intergenic |
CTTGCTCTACAATCAGCTGC+TGG | 0.583336 | 5.2:+74706806 | MS.gene016887:CDS |
CGTTGGCTCGTGCTTTGAGT+GGG | 0.589340 | 5.2:+74696891 | MS.gene016887:CDS |
TCGTGCTTTGAGTGGGAAGA+CGG | 0.590102 | 5.2:+74696898 | MS.gene016887:CDS |
ACGTTGGCTCGTGCTTTGAG+TGG | 0.590747 | 5.2:+74696890 | MS.gene016887:CDS |
CTATGTTGAGGAACCTGAGT+CGG | 0.592649 | 5.2:+74707482 | MS.gene016887:CDS |
GTCGAAACTGAAACCAAAGC+TGG | 0.594385 | 5.2:+74706947 | MS.gene016887:CDS |
TTGTGTTACGAAAGGCGCTA+AGG | 0.597928 | 5.2:+74707090 | MS.gene016887:CDS |
GAACCAGGTTGTGTTACGAA+AGG | 0.598355 | 5.2:+74707082 | MS.gene016887:CDS |
TCAAGATTCATGCTCCCTAA+CGG | 0.602234 | 5.2:-74696764 | None:intergenic |
CATTCACGGATATAAGTGGC+GGG | 0.609828 | 5.2:-74706571 | None:intergenic |
CGGAGCAGACACCATGCAAG+CGG | 0.610864 | 5.2:-74701814 | None:intergenic |
CCATAATGAACTGGTTACCA+AGG | 0.615234 | 5.2:+74697414 | MS.gene016887:CDS |
TTATCTTGAAGCGCATACCA+TGG | 0.615897 | 5.2:+74703929 | MS.gene016887:CDS |
GTATGGTCTAACTCTTGATG+AGG | 0.618117 | 5.2:+74696712 | MS.gene016887:CDS |
AAATACGACGCTTCTGCTGG+TGG | 0.618287 | 5.2:+74706845 | MS.gene016887:CDS |
CTTCTATTAGTCCGACGGTG+GGG | 0.618855 | 5.2:+74697059 | MS.gene016887:CDS |
TGAAGCAGCAAGCTATGTTG+AGG | 0.619456 | 5.2:+74707470 | MS.gene016887:CDS |
AAAGCTGGTGCTTCTGATGG+CGG | 0.620664 | 5.2:+74706962 | MS.gene016887:CDS |
TGGCGGGACATCAAGCTTTG+GGG | 0.621361 | 5.2:-74706555 | None:intergenic |
CCATGCACTAGCAGCGACGA+GGG | 0.623257 | 5.2:+74701881 | MS.gene016887:CDS |
CAGAACTTACTCTTCGAAGA+CGG | 0.629693 | 5.2:-74699957 | None:intergenic |
GGAAATCAAAGAAGCATGGG+AGG | 0.632778 | 5.2:+74707287 | MS.gene016887:CDS |
CAGCAGCTGATTGTAGAGCA+AGG | 0.633281 | 5.2:-74706805 | None:intergenic |
TGCTTCGGATGCATATGAGA+AGG | 0.633586 | 5.2:+74697192 | MS.gene016887:CDS |
TTGAAAGCTTTGAGGAATAG+CGG | 0.633827 | 5.2:-74697098 | None:intergenic |
TATGCAGCTCAAGAAAGAGA+AGG | 0.635674 | 5.2:+74697459 | MS.gene016887:CDS |
TCATTCACGGATATAAGTGG+CGG | 0.647640 | 5.2:-74706572 | None:intergenic |
TCCATGCACTAGCAGCGACG+AGG | 0.648797 | 5.2:+74701880 | MS.gene016887:CDS |
TGCTTTGAGTGGGAAGACGG+TGG | 0.649656 | 5.2:+74696901 | MS.gene016887:CDS |
ATTGCATCCAACCCCACCGT+CGG | 0.650426 | 5.2:-74697070 | None:intergenic |
CATATGAGAAGGCTTTGGAA+AGG | 0.652484 | 5.2:+74697203 | MS.gene016887:CDS |
GATAGGGAAATGGGTCTCGG+TGG | 0.652593 | 5.2:+74696989 | MS.gene016887:CDS |
GTATGGAGAGAAATCCAGCT+AGG | 0.652627 | 5.2:+74696929 | MS.gene016887:CDS |
GAAAACACTCTATCCATTTG+GGG | 0.667087 | 5.2:-74707357 | None:intergenic |
GAAGCATGGGAGGACCTCAA+GGG | 0.667583 | 5.2:+74707297 | MS.gene016887:CDS |
ACGGCAGGCTAGTATGACGT+TGG | 0.673052 | 5.2:+74696874 | MS.gene016887:CDS |
CTAGTTGATCAAGTGAACAA+CGG | 0.675401 | 5.2:+74703979 | MS.gene016887:CDS |
GGGCTGAATACCGTTACCTG+TGG | 0.680442 | 5.2:+74704000 | MS.gene016887:CDS |
GAACTTCATGAAAACCCTTG+AGG | 0.683462 | 5.2:-74707311 | None:intergenic |
ATAGTCTACTAGGAGATTTG+GGG | 0.688137 | 5.2:+74696738 | MS.gene016887:CDS |
TTGCACAGGAGTTTGAGCAG+GGG | 0.710311 | 5.2:+74699902 | MS.gene016887:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 74696644 | 74707527 | 74696644 | ID=MS.gene016887 |
chr5.2 | mRNA | 74696644 | 74707527 | 74696644 | ID=MS.gene016887.t1;Parent=MS.gene016887 |
chr5.2 | exon | 74696644 | 74697285 | 74696644 | ID=MS.gene016887.t1.exon1;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74696644 | 74697285 | 74696644 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
chr5.2 | exon | 74697409 | 74697480 | 74697409 | ID=MS.gene016887.t1.exon2;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74697409 | 74697480 | 74697409 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
chr5.2 | exon | 74699910 | 74699969 | 74699910 | ID=MS.gene016887.t1.exon3;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74699910 | 74699969 | 74699910 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
chr5.2 | exon | 74701803 | 74701939 | 74701803 | ID=MS.gene016887.t1.exon4;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74701803 | 74701939 | 74701803 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
chr5.2 | exon | 74703867 | 74704021 | 74703867 | ID=MS.gene016887.t1.exon5;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74703867 | 74704021 | 74703867 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
chr5.2 | exon | 74706528 | 74707151 | 74706528 | ID=MS.gene016887.t1.exon6;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74706528 | 74707151 | 74706528 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
chr5.2 | exon | 74707283 | 74707527 | 74707283 | ID=MS.gene016887.t1.exon7;Parent=MS.gene016887.t1 |
chr5.2 | CDS | 74707283 | 74707527 | 74707283 | ID=cds.MS.gene016887.t1;Parent=MS.gene016887.t1 |
Gene Sequence |
Protein sequence |