Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016924.t1 | AFK49674.1 | 85.4 | 302 | 40 | 1 | 1 | 298 | 1 | 302 | 8.40E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016924.t1 | Q14919 | 57.1 | 91 | 39 | 0 | 2 | 92 | 5 | 95 | 5.4e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016924.t1 | I3TAY2 | 85.4 | 302 | 40 | 1 | 1 | 298 | 1 | 302 | 6.1e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016924.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016924.t1 | MTR_5g088760 | 91.753 | 291 | 18 | 3 | 1 | 286 | 1 | 290 | 6.45e-165 | 460 |
| MS.gene016924.t1 | MTR_5g088760 | 91.429 | 280 | 18 | 3 | 12 | 286 | 3 | 281 | 5.33e-156 | 437 |
| MS.gene016924.t1 | MTR_5g088760 | 91.241 | 274 | 18 | 3 | 18 | 286 | 1 | 273 | 1.12e-151 | 426 |
| MS.gene016924.t1 | MTR_3g012030 | 49.329 | 298 | 122 | 9 | 1 | 287 | 1 | 280 | 2.65e-78 | 240 |
| MS.gene016924.t1 | MTR_8g041420 | 44.337 | 309 | 135 | 6 | 1 | 287 | 1 | 294 | 1.27e-74 | 231 |
| MS.gene016924.t1 | MTR_3g012030 | 46.619 | 281 | 121 | 9 | 18 | 287 | 1 | 263 | 1.50e-65 | 207 |
| MS.gene016924.t1 | MTR_3g012030 | 37.975 | 237 | 118 | 9 | 62 | 287 | 1 | 219 | 1.15e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016924.t1 | AT5G19490 | 44.000 | 300 | 124 | 8 | 1 | 297 | 1 | 259 | 4.47e-59 | 190 |
| MS.gene016924.t1 | AT3G12480 | 69.925 | 133 | 34 | 1 | 1 | 127 | 1 | 133 | 6.54e-59 | 190 |
Find 63 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5.1:-70329803 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5.1:+70330095 | MS.gene016924:CDS |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5.1:+70328923 | MS.gene016924:CDS |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5.1:+70329656 | MS.gene016924:CDS |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5.1:+70327661 | MS.gene016924:CDS |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5.1:-70329802 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5.1:-70330089 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5.1:+70329108 | MS.gene016924:CDS |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 5.1:+70329668 | MS.gene016924:CDS |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5.1:+70330111 | MS.gene016924:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5.1:+70329904 | MS.gene016924:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5.1:+70329660 | MS.gene016924:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5.1:+70329662 | MS.gene016924:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5.1:+70327662 | MS.gene016924:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 5.1:+70329680 | MS.gene016924:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 5.1:+70329674 | MS.gene016924:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5.1:-70328935 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5.1:-70329845 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5.1:-70329923 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5.1:-70329833 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5.1:-70329881 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5.1:+70328941 | MS.gene016924:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5.1:-70330088 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5.1:-70329929 | None:intergenic |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5.1:+70329650 | MS.gene016924:CDS |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5.1:-70327917 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5.1:+70329648 | MS.gene016924:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5.1:+70329649 | MS.gene016924:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5.1:-70329965 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5.1:-70329651 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5.1:+70329910 | MS.gene016924:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5.1:+70329661 | MS.gene016924:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5.1:+70329641 | MS.gene016924:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5.1:+70329922 | MS.gene016924:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5.1:-70327703 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5.1:+70329755 | MS.gene016924:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5.1:-70328970 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5.1:+70330018 | MS.gene016924:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 5.1:+70327884 | MS.gene016924:CDS |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5.1:-70329959 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5.1:+70330028 | MS.gene016924:CDS |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5.1:-70330046 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5.1:+70329850 | MS.gene016924:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5.1:+70329956 | MS.gene016924:CDS |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5.1:+70329639 | MS.gene016924:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5.1:+70328966 | MS.gene016924:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5.1:+70329871 | MS.gene016924:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5.1:-70330045 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 5.1:+70327885 | MS.gene016924:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5.1:+70327675 | MS.gene016924:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5.1:+70329793 | MS.gene016924:CDS |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5.1:+70328926 | MS.gene016924:CDS |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5.1:+70329635 | MS.gene016924:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5.1:-70329954 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5.1:+70329644 | MS.gene016924:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 5.1:+70327881 | MS.gene016924:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5.1:+70329640 | MS.gene016924:CDS |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5.1:+70330032 | MS.gene016924:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5.1:+70329829 | MS.gene016924:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5.1:-70327698 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 5.1:+70327886 | MS.gene016924:CDS |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5.1:+70328969 | MS.gene016924:CDS |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5.1:+70329087 | MS.gene016924:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATCAGT+TGG | - | chr5.1:70329542-70329561 | None:intergenic | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | + | chr5.1:70328178-70328197 | MS.gene016924:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | - | chr5.1:70328609-70328628 | None:intergenic | 10.0% |
| !! | ATTTCACAAAAAAAAAAAAT+CGG | + | chr5.1:70328154-70328173 | MS.gene016924:intron | 10.0% |
| !! | TAGTAAAAAAAAATGTTAAA+AGG | - | chr5.1:70327346-70327365 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | - | chr5.1:70328052-70328071 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | - | chr5.1:70328026-70328045 | None:intergenic | 10.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | - | chr5.1:70328742-70328761 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | chr5.1:70328521-70328540 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | - | chr5.1:70327740-70327759 | None:intergenic | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | - | chr5.1:70326436-70326455 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | + | chr5.1:70326889-70326908 | MS.gene016924:intron | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | - | chr5.1:70327741-70327760 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | + | chr5.1:70329454-70329473 | MS.gene016924:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | - | chr5.1:70329453-70329472 | None:intergenic | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | - | chr5.1:70326893-70326912 | None:intergenic | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | + | chr5.1:70327174-70327193 | MS.gene016924:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | + | chr5.1:70328744-70328763 | MS.gene016924:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | + | chr5.1:70329050-70329069 | MS.gene016924:intron | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | - | chr5.1:70328279-70328298 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | + | chr5.1:70328743-70328762 | MS.gene016924:intron | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | + | chr5.1:70326399-70326418 | MS.gene016924:intron | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | + | chr5.1:70326398-70326417 | MS.gene016924:intron | 15.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | + | chr5.1:70326998-70327017 | MS.gene016924:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | - | chr5.1:70328807-70328826 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | - | chr5.1:70328437-70328456 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | + | chr5.1:70326429-70326448 | MS.gene016924:intron | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | + | chr5.1:70328691-70328710 | MS.gene016924:intron | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | - | chr5.1:70329307-70329326 | None:intergenic | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | + | chr5.1:70326443-70326462 | MS.gene016924:intron | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | + | chr5.1:70326474-70326493 | MS.gene016924:intron | 20.0% |
| !!! | ATTTTTCAATGTCAACTAAT+AGG | + | chr5.1:70328470-70328489 | MS.gene016924:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | + | chr5.1:70327173-70327192 | MS.gene016924:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | + | chr5.1:70328745-70328764 | MS.gene016924:intron | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | + | chr5.1:70326473-70326492 | MS.gene016924:intron | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | + | chr5.1:70326444-70326463 | MS.gene016924:intron | 20.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | - | chr5.1:70328738-70328757 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | - | chr5.1:70327336-70327355 | None:intergenic | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | - | chr5.1:70327513-70327532 | None:intergenic | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | - | chr5.1:70328116-70328135 | None:intergenic | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | + | chr5.1:70326569-70326588 | MS.gene016924:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | + | chr5.1:70328692-70328711 | MS.gene016924:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | - | chr5.1:70329419-70329438 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | - | chr5.1:70326789-70326808 | None:intergenic | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | + | chr5.1:70327230-70327249 | MS.gene016924:intron | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | - | chr5.1:70329195-70329214 | None:intergenic | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | - | chr5.1:70328427-70328446 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | + | chr5.1:70329232-70329251 | MS.gene016924:intron | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | + | chr5.1:70326997-70327016 | MS.gene016924:intron | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | - | chr5.1:70328808-70328827 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | + | chr5.1:70328348-70328367 | MS.gene016924:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | + | chr5.1:70328690-70328709 | MS.gene016924:intron | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | + | chr5.1:70330111-70330130 | MS.gene016924:CDS | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | - | chr5.1:70328806-70328825 | None:intergenic | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | - | chr5.1:70326788-70326807 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | + | chr5.1:70328573-70328592 | MS.gene016924:intron | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | + | chr5.1:70327621-70327640 | MS.gene016924:intron | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | + | chr5.1:70329904-70329923 | MS.gene016924:CDS | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | - | chr5.1:70329116-70329135 | None:intergenic | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | - | chr5.1:70330104-70330123 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | + | chr5.1:70330057-70330076 | MS.gene016924:CDS | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | + | chr5.1:70327953-70327972 | MS.gene016924:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | - | chr5.1:70327277-70327296 | None:intergenic | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | + | chr5.1:70329319-70329338 | MS.gene016924:intron | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | - | chr5.1:70328307-70328326 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | + | chr5.1:70327763-70327782 | MS.gene016924:intron | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | + | chr5.1:70326445-70326464 | MS.gene016924:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | - | chr5.1:70330059-70330078 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | + | chr5.1:70326852-70326871 | MS.gene016924:intron | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | + | chr5.1:70326466-70326485 | MS.gene016924:intron | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | + | chr5.1:70327381-70327400 | MS.gene016924:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | - | chr5.1:70327920-70327939 | None:intergenic | 25.0% |
| AAAAGCTTTACATGTCTTCT+TGG | + | chr5.1:70328843-70328862 | MS.gene016924:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | + | chr5.1:70328193-70328212 | MS.gene016924:intron | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | - | chr5.1:70327392-70327411 | None:intergenic | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | - | chr5.1:70326775-70326794 | None:intergenic | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | + | chr5.1:70330095-70330114 | MS.gene016924:CDS | 30.0% | |
| AACTGTACTACACAATTTGT+CGG | - | chr5.1:70326942-70326961 | None:intergenic | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | - | chr5.1:70327083-70327102 | None:intergenic | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | - | chr5.1:70328663-70328682 | None:intergenic | 30.0% | |
| AATTTCAGAAGAGAAGATTG+AGG | + | chr5.1:70330018-70330037 | MS.gene016924:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | + | chr5.1:70326571-70326590 | MS.gene016924:intron | 30.0% | |
| ATAGAAAACATGACCAAAAG+CGG | - | chr5.1:70327157-70327176 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | + | chr5.1:70326943-70326962 | MS.gene016924:intron | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | - | chr5.1:70327544-70327563 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | + | chr5.1:70327404-70327423 | MS.gene016924:intron | 30.0% | |
| GACAAGAAAAAAAACCGAAA+GGG | - | chr5.1:70326338-70326357 | None:intergenic | 30.0% | |
| GAGATAAAATAACTCTGTTG+TGG | + | chr5.1:70326568-70326587 | MS.gene016924:intron | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | + | chr5.1:70326570-70326589 | MS.gene016924:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | - | chr5.1:70326992-70327011 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | - | chr5.1:70326776-70326795 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | + | chr5.1:70327626-70327645 | MS.gene016924:intron | 30.0% | |
| TACTTGCTTAATATTGATGC+CGG | + | chr5.1:70326546-70326565 | MS.gene016924:intron | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | + | chr5.1:70327044-70327063 | MS.gene016924:intron | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | + | chr5.1:70328816-70328835 | MS.gene016924:intron | 30.0% | |
| ! | AAAAAACAACCTTTTCAACG+AGG | - | chr5.1:70326361-70326380 | None:intergenic | 30.0% |
| ! | AAAAACAACCTTTTCAACGA+GGG | - | chr5.1:70326360-70326379 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | + | chr5.1:70329503-70329522 | MS.gene016924:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | - | chr5.1:70327095-70327114 | None:intergenic | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | - | chr5.1:70329390-70329409 | None:intergenic | 30.0% |
| ! | ATGAAGTACCTATATGCTTT+CGG | + | chr5.1:70327084-70327103 | MS.gene016924:intron | 30.0% |
| ! | ATGCTCATAGATATCGTTTT+GGG | + | chr5.1:70326831-70326850 | MS.gene016924:intron | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | + | chr5.1:70329364-70329383 | MS.gene016924:intron | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | - | chr5.1:70329978-70329997 | None:intergenic | 30.0% |
| !! | CAACAGAGTTATTTTATCTC+CGG | - | chr5.1:70326568-70326587 | None:intergenic | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | - | chr5.1:70329568-70329587 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | - | chr5.1:70329228-70329247 | None:intergenic | 30.0% |
| AAAAACCGAAAGGGTAAACA+AGG | - | chr5.1:70326329-70326348 | None:intergenic | 35.0% | |
| ACTAAGCAAATGCCCATTTA+TGG | - | chr5.1:70327013-70327032 | None:intergenic | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | + | chr5.1:70327675-70327694 | MS.gene016924:CDS | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | + | chr5.1:70327885-70327904 | MS.gene016924:CDS | 35.0% | |
| ATGATACGTTGTCATAGGTT+TGG | + | chr5.1:70327129-70327148 | MS.gene016924:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | + | chr5.1:70327661-70327680 | MS.gene016924:CDS | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | + | chr5.1:70327515-70327534 | MS.gene016924:intron | 35.0% | |
| CAGGAATATTACTCAGCAAA+AGG | - | chr5.1:70329162-70329181 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | + | chr5.1:70327881-70327900 | MS.gene016924:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | - | chr5.1:70327470-70327489 | None:intergenic | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | - | chr5.1:70327706-70327725 | None:intergenic | 35.0% | |
| GCATCTGTTAGAAATCTGTT+TGG | + | chr5.1:70327403-70327422 | MS.gene016924:intron | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | - | chr5.1:70329368-70329387 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | - | chr5.1:70329397-70329416 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | - | chr5.1:70326339-70326358 | None:intergenic | 35.0% | |
| TAAAATAACTCTGTTGTGGG+GGG | + | chr5.1:70326572-70326591 | MS.gene016924:intron | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | + | chr5.1:70327411-70327430 | MS.gene016924:intron | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | + | chr5.1:70327103-70327122 | MS.gene016924:intron | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | + | chr5.1:70329468-70329487 | MS.gene016924:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | + | chr5.1:70327662-70327681 | MS.gene016924:CDS | 35.0% | |
| TGTATGCAACTTGGGTTTAA+GGG | + | chr5.1:70326729-70326748 | MS.gene016924:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | + | chr5.1:70327972-70327991 | MS.gene016924:intron | 35.0% | |
| TTTAAATCTGAATCCGGATC+CGG | + | chr5.1:70329910-70329929 | MS.gene016924:CDS | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | + | chr5.1:70327998-70328017 | MS.gene016924:intron | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | + | chr5.1:70326830-70326849 | MS.gene016924:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | + | chr5.1:70328000-70328019 | MS.gene016924:intron | 35.0% |
| ! | GATCTACAGTTTTACTTCCT+TGG | - | chr5.1:70329700-70329719 | None:intergenic | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | + | chr5.1:70327999-70328018 | MS.gene016924:intron | 35.0% |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | + | chr5.1:70326743-70326762 | MS.gene016924:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | + | chr5.1:70328699-70328718 | MS.gene016924:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | + | chr5.1:70328667-70328686 | MS.gene016924:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | + | chr5.1:70328666-70328685 | MS.gene016924:intron | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | - | chr5.1:70330092-70330111 | None:intergenic | 35.0% |
| !! | ATTTTGAAGATGAACCGGAT+GGG | - | chr5.1:70329973-70329992 | None:intergenic | 35.0% |
| !! | CTATTTCGTACAAAGTGTTG+AGG | + | chr5.1:70326699-70326718 | MS.gene016924:intron | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | - | chr5.1:70330091-70330110 | None:intergenic | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | - | chr5.1:70328721-70328740 | None:intergenic | 35.0% |
| !! | TAGTGGATTGCAGAAAATAG+CGG | + | chr5.1:70327247-70327266 | MS.gene016924:intron | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | + | chr5.1:70329755-70329774 | MS.gene016924:CDS | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | - | chr5.1:70328830-70328849 | None:intergenic | 35.0% |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | + | chr5.1:70326449-70326468 | MS.gene016924:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | - | chr5.1:70329784-70329803 | None:intergenic | 35.0% |
| AAAGGGTAAACAAGGAAAGG+AGG | - | chr5.1:70326321-70326340 | None:intergenic | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | - | chr5.1:70327119-70327138 | None:intergenic | 40.0% | |
| AGAACAAATATAACCAGGGG+CGG | - | chr5.1:70328803-70328822 | None:intergenic | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | + | chr5.1:70328926-70328945 | MS.gene016924:CDS | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | - | chr5.1:70329806-70329825 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | - | chr5.1:70330049-70330068 | None:intergenic | 40.0% | |
| ATTTCATCCATGTCGTCATC+CGG | - | chr5.1:70329932-70329951 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | + | chr5.1:70327884-70327903 | MS.gene016924:CDS | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | - | chr5.1:70327701-70327720 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | - | chr5.1:70329848-70329867 | None:intergenic | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | - | chr5.1:70329805-70329824 | None:intergenic | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | + | chr5.1:70329108-70329127 | MS.gene016924:CDS | 40.0% | |
| GGCATATGATACGTTGTCAT+AGG | + | chr5.1:70327124-70327143 | MS.gene016924:intron | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | + | chr5.1:70326730-70326749 | MS.gene016924:intron | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | + | chr5.1:70328923-70328942 | MS.gene016924:CDS | 40.0% | |
| GTGTATGCAACTTGGGTTTA+AGG | + | chr5.1:70326728-70326747 | MS.gene016924:intron | 40.0% | |
| TAATGTAAGCCCAGAAATCG+AGG | + | chr5.1:70329793-70329812 | MS.gene016924:CDS | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | + | chr5.1:70327886-70327905 | MS.gene016924:CDS | 40.0% | |
| TATCAGAAAAGGACCATCCA+GGG | - | chr5.1:70330048-70330067 | None:intergenic | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | + | chr5.1:70327290-70327309 | MS.gene016924:intron | 40.0% | |
| TTTCTTGTCCCTCGTTGAAA+AGG | + | chr5.1:70326349-70326368 | MS.gene016924:intron | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | + | chr5.1:70326321-70326340 | MS.gene016924:intron | 40.0% |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | + | chr5.1:70329850-70329869 | MS.gene016924:CDS | 40.0% |
| ! | TCGACAACTGAACTTGTTTG+GGG | + | chr5.1:70328668-70328687 | MS.gene016924:intron | 40.0% |
| ! | TGGATGGTCCTTTTCTGATA+TGG | + | chr5.1:70330048-70330067 | MS.gene016924:CDS | 40.0% |
| !! | GATTTTGAAGATGAACCGGA+TGG | - | chr5.1:70329974-70329993 | None:intergenic | 40.0% |
| !! | TACTGGCTTGTGAATGCAAA+TGG | + | chr5.1:70329485-70329504 | MS.gene016924:intron | 40.0% |
| !! | TATGGATGATGGGTTTCTCT+TGG | + | chr5.1:70326484-70326503 | MS.gene016924:intron | 40.0% |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | + | chr5.1:70326702-70326721 | MS.gene016924:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | - | chr5.1:70329872-70329891 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | + | chr5.1:70328754-70328773 | MS.gene016924:intron | 40.0% |
| ACAGAACTCGCGCAAGAAAT+AGG | - | chr5.1:70329019-70329038 | None:intergenic | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | - | chr5.1:70329836-70329855 | None:intergenic | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | + | chr5.1:70330032-70330051 | MS.gene016924:CDS | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | - | chr5.1:70329185-70329204 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | - | chr5.1:70326324-70326343 | None:intergenic | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | - | chr5.1:70327980-70327999 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | - | chr5.1:70326307-70326326 | None:intergenic | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | + | chr5.1:70327291-70327310 | MS.gene016924:intron | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | + | chr5.1:70330028-70330047 | MS.gene016924:CDS | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | + | chr5.1:70329871-70329890 | MS.gene016924:CDS | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | + | chr5.1:70326954-70326973 | MS.gene016924:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | + | chr5.1:70329829-70329848 | MS.gene016924:CDS | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | + | chr5.1:70329212-70329231 | MS.gene016924:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | - | chr5.1:70329884-70329903 | None:intergenic | 45.0% | |
| AACATGCGCATACCAGTGGA+AGG | + | chr5.1:70329639-70329658 | MS.gene016924:CDS | 50.0% | |
| ACACCAACTCCTATCCCATC+CGG | + | chr5.1:70329956-70329975 | MS.gene016924:CDS | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | + | chr5.1:70329640-70329659 | MS.gene016924:CDS | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | + | chr5.1:70328969-70328988 | MS.gene016924:CDS | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | - | chr5.1:70328973-70328992 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | + | chr5.1:70328966-70328985 | MS.gene016924:CDS | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | + | chr5.1:70327303-70327322 | MS.gene016924:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | + | chr5.1:70327202-70327221 | MS.gene016924:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | - | chr5.1:70328783-70328802 | None:intergenic | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | - | chr5.1:70329968-70329987 | None:intergenic | 50.0% | |
| GAGGTGCGTGTATGCAACTT+GGG | + | chr5.1:70326721-70326740 | MS.gene016924:intron | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | - | chr5.1:70328784-70328803 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | - | chr5.1:70326308-70326327 | None:intergenic | 50.0% | |
| GGCTGTCATGCTGTGTACTA+CGG | + | chr5.1:70327195-70327214 | MS.gene016924:intron | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | + | chr5.1:70329087-70329106 | MS.gene016924:CDS | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | + | chr5.1:70327203-70327222 | MS.gene016924:intron | 50.0% | |
| ! | ACTCTGTTGTGGGGGGTTTT+TGG | + | chr5.1:70326579-70326598 | MS.gene016924:intron | 50.0% |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | - | chr5.1:70329694-70329713 | None:intergenic | 50.0% |
| ! | CATAGGTTTGGCACCGCTTT+TGG | + | chr5.1:70327141-70327160 | MS.gene016924:intron | 50.0% |
| AGGGGCGGTTCCTTTCATGT+AGG | - | chr5.1:70328788-70328807 | None:intergenic | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | + | chr5.1:70329641-70329660 | MS.gene016924:CDS | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | + | chr5.1:70329635-70329654 | MS.gene016924:CDS | 55.0% | |
| CGCATGTTCTCGCTGTGTGA+AGG | - | chr5.1:70329627-70329646 | None:intergenic | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | - | chr5.1:70329013-70329032 | None:intergenic | 55.0% | |
| GAACCGGATGGGATAGGAGT+TGG | - | chr5.1:70329962-70329981 | None:intergenic | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | - | chr5.1:70328938-70328957 | None:intergenic | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | - | chr5.1:70328785-70328804 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | + | chr5.1:70328775-70328794 | MS.gene016924:intron | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | + | chr5.1:70328787-70328806 | MS.gene016924:intron | 55.0% | |
| TCATGTAGGAGGGGTAGCCT+TGG | - | chr5.1:70328774-70328793 | None:intergenic | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | - | chr5.1:70329926-70329945 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | + | chr5.1:70328941-70328960 | MS.gene016924:CDS | 55.0% | |
| ! | GGAGGTGCGTGTATGCAACT+TGG | + | chr5.1:70326720-70326739 | MS.gene016924:intron | 55.0% |
| !! | GGATGGGATAGGAGTTGGTG+TGG | - | chr5.1:70329957-70329976 | None:intergenic | 55.0% |
| ATACCAGTGGAAGGGGCGGT+AGG | + | chr5.1:70329648-70329667 | MS.gene016924:CDS | 60.0% | |
| GCAAAGTGGTGTGCAGTGGC+AGG | - | chr5.1:70329181-70329200 | None:intergenic | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | + | chr5.1:70329649-70329668 | MS.gene016924:CDS | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | + | chr5.1:70329922-70329941 | MS.gene016924:CDS | 60.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | - | chr5.1:70326971-70326990 | None:intergenic | 60.0% |
| ACCAGTGGAAGGGGCGGTAG+GGG | + | chr5.1:70329650-70329669 | MS.gene016924:CDS | 65.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | + | chr5.1:70329644-70329663 | MS.gene016924:CDS | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | - | chr5.1:70329654-70329673 | None:intergenic | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | + | chr5.1:70329668-70329687 | MS.gene016924:CDS | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | + | chr5.1:70329656-70329675 | MS.gene016924:CDS | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | + | chr5.1:70329662-70329681 | MS.gene016924:CDS | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | + | chr5.1:70329661-70329680 | MS.gene016924:CDS | 70.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | + | chr5.1:70329674-70329693 | MS.gene016924:CDS | 75.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | + | chr5.1:70329660-70329679 | MS.gene016924:CDS | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | + | chr5.1:70329680-70329699 | MS.gene016924:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 70326278 | 70330156 | 70326278 | ID=MS.gene016924 |
| chr5.1 | mRNA | 70326278 | 70330156 | 70326278 | ID=MS.gene016924.t1;Parent=MS.gene016924 |
| chr5.1 | exon | 70326278 | 70326310 | 70326278 | ID=MS.gene016924.t1.exon1;Parent=MS.gene016924.t1 |
| chr5.1 | CDS | 70326278 | 70326310 | 70326278 | ID=cds.MS.gene016924.t1;Parent=MS.gene016924.t1 |
| chr5.1 | exon | 70327643 | 70327715 | 70327643 | ID=MS.gene016924.t1.exon2;Parent=MS.gene016924.t1 |
| chr5.1 | CDS | 70327643 | 70327715 | 70327643 | ID=cds.MS.gene016924.t1;Parent=MS.gene016924.t1 |
| chr5.1 | exon | 70327842 | 70327935 | 70327842 | ID=MS.gene016924.t1.exon3;Parent=MS.gene016924.t1 |
| chr5.1 | CDS | 70327842 | 70327935 | 70327842 | ID=cds.MS.gene016924.t1;Parent=MS.gene016924.t1 |
| chr5.1 | exon | 70328874 | 70328990 | 70328874 | ID=MS.gene016924.t1.exon4;Parent=MS.gene016924.t1 |
| chr5.1 | CDS | 70328874 | 70328990 | 70328874 | ID=cds.MS.gene016924.t1;Parent=MS.gene016924.t1 |
| chr5.1 | exon | 70329072 | 70329129 | 70329072 | ID=MS.gene016924.t1.exon5;Parent=MS.gene016924.t1 |
| chr5.1 | CDS | 70329072 | 70329129 | 70329072 | ID=cds.MS.gene016924.t1;Parent=MS.gene016924.t1 |
| chr5.1 | exon | 70329635 | 70330156 | 70329635 | ID=MS.gene016924.t1.exon6;Parent=MS.gene016924.t1 |
| chr5.1 | CDS | 70329635 | 70330156 | 70329635 | ID=cds.MS.gene016924.t1;Parent=MS.gene016924.t1 |
| Gene Sequence |
| Protein sequence |
