Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016925.t1 | AFK49674.1 | 85.4 | 302 | 40 | 1 | 1 | 298 | 1 | 302 | 8.40E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016925.t1 | Q14919 | 57.1 | 91 | 39 | 0 | 2 | 92 | 5 | 95 | 5.4e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016925.t1 | I3TAY2 | 85.4 | 302 | 40 | 1 | 1 | 298 | 1 | 302 | 6.1e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016925.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016925.t1 | MTR_5g088760 | 91.753 | 291 | 18 | 3 | 1 | 286 | 1 | 290 | 6.45e-165 | 460 |
| MS.gene016925.t1 | MTR_5g088760 | 91.429 | 280 | 18 | 3 | 12 | 286 | 3 | 281 | 5.33e-156 | 437 |
| MS.gene016925.t1 | MTR_5g088760 | 91.241 | 274 | 18 | 3 | 18 | 286 | 1 | 273 | 1.12e-151 | 426 |
| MS.gene016925.t1 | MTR_3g012030 | 49.329 | 298 | 122 | 9 | 1 | 287 | 1 | 280 | 2.65e-78 | 240 |
| MS.gene016925.t1 | MTR_8g041420 | 44.337 | 309 | 135 | 6 | 1 | 287 | 1 | 294 | 1.27e-74 | 231 |
| MS.gene016925.t1 | MTR_3g012030 | 46.619 | 281 | 121 | 9 | 18 | 287 | 1 | 263 | 1.50e-65 | 207 |
| MS.gene016925.t1 | MTR_3g012030 | 37.975 | 237 | 118 | 9 | 62 | 287 | 1 | 219 | 1.15e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016925.t1 | AT5G19490 | 44.000 | 300 | 124 | 8 | 1 | 297 | 1 | 259 | 4.47e-59 | 190 |
| MS.gene016925.t1 | AT3G12480 | 69.925 | 133 | 34 | 1 | 1 | 127 | 1 | 133 | 6.54e-59 | 190 |
Find 63 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5.1:-70354306 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5.1:+70354598 | MS.gene016925:CDS |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5.1:+70353426 | MS.gene016925:CDS |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5.1:+70354159 | MS.gene016925:CDS |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5.1:+70352164 | MS.gene016925:CDS |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5.1:-70354305 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5.1:-70354592 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5.1:+70353611 | MS.gene016925:CDS |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 5.1:+70354171 | MS.gene016925:CDS |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5.1:+70354614 | MS.gene016925:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5.1:+70354407 | MS.gene016925:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5.1:+70354163 | MS.gene016925:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5.1:+70354165 | MS.gene016925:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5.1:+70352165 | MS.gene016925:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 5.1:+70354183 | MS.gene016925:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 5.1:+70354177 | MS.gene016925:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5.1:-70353438 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5.1:-70354348 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5.1:-70354426 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5.1:-70354336 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5.1:-70354384 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5.1:+70353444 | MS.gene016925:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5.1:-70354591 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5.1:-70354432 | None:intergenic |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5.1:+70354153 | MS.gene016925:CDS |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5.1:-70352420 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5.1:+70354151 | MS.gene016925:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5.1:+70354152 | MS.gene016925:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5.1:-70354468 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5.1:-70354154 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5.1:+70354413 | MS.gene016925:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5.1:+70354164 | MS.gene016925:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5.1:+70354144 | MS.gene016925:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5.1:+70354425 | MS.gene016925:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5.1:-70352206 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5.1:+70354258 | MS.gene016925:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5.1:-70353473 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5.1:+70354521 | MS.gene016925:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 5.1:+70352387 | MS.gene016925:CDS |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5.1:-70354462 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5.1:+70354531 | MS.gene016925:CDS |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5.1:-70354549 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5.1:+70354353 | MS.gene016925:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5.1:+70354459 | MS.gene016925:CDS |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5.1:+70354142 | MS.gene016925:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5.1:+70353469 | MS.gene016925:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5.1:+70354374 | MS.gene016925:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5.1:-70354548 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 5.1:+70352388 | MS.gene016925:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5.1:+70352178 | MS.gene016925:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5.1:+70354296 | MS.gene016925:CDS |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5.1:+70353429 | MS.gene016925:CDS |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5.1:+70354138 | MS.gene016925:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5.1:-70354457 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5.1:+70354147 | MS.gene016925:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 5.1:+70352384 | MS.gene016925:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5.1:+70354143 | MS.gene016925:CDS |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5.1:+70354535 | MS.gene016925:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5.1:+70354332 | MS.gene016925:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5.1:-70352201 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 5.1:+70352389 | MS.gene016925:CDS |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5.1:+70353472 | MS.gene016925:CDS |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5.1:+70353590 | MS.gene016925:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATCAGT+TGG | - | chr5.1:70354045-70354064 | None:intergenic | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | + | chr5.1:70352681-70352700 | MS.gene016925:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | - | chr5.1:70353112-70353131 | None:intergenic | 10.0% |
| !! | ATTTCACAAAAAAAAAAAAT+CGG | + | chr5.1:70352657-70352676 | MS.gene016925:intron | 10.0% |
| !! | TAGTAAAAAAAAATGTTAAA+AGG | - | chr5.1:70351849-70351868 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | - | chr5.1:70352555-70352574 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | - | chr5.1:70352529-70352548 | None:intergenic | 10.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | - | chr5.1:70353245-70353264 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | chr5.1:70353024-70353043 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | - | chr5.1:70352243-70352262 | None:intergenic | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | - | chr5.1:70350939-70350958 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | + | chr5.1:70351392-70351411 | MS.gene016925:intron | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | - | chr5.1:70352244-70352263 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | + | chr5.1:70353957-70353976 | MS.gene016925:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | - | chr5.1:70353956-70353975 | None:intergenic | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | - | chr5.1:70351396-70351415 | None:intergenic | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | + | chr5.1:70351677-70351696 | MS.gene016925:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | + | chr5.1:70353247-70353266 | MS.gene016925:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | + | chr5.1:70353553-70353572 | MS.gene016925:intron | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | - | chr5.1:70352782-70352801 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | + | chr5.1:70353246-70353265 | MS.gene016925:intron | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | + | chr5.1:70350902-70350921 | MS.gene016925:intron | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | + | chr5.1:70350901-70350920 | MS.gene016925:intron | 15.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | + | chr5.1:70351501-70351520 | MS.gene016925:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | - | chr5.1:70353310-70353329 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | - | chr5.1:70352940-70352959 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | + | chr5.1:70350932-70350951 | MS.gene016925:intron | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | + | chr5.1:70353194-70353213 | MS.gene016925:intron | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | - | chr5.1:70353810-70353829 | None:intergenic | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | + | chr5.1:70350946-70350965 | MS.gene016925:intron | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | + | chr5.1:70350977-70350996 | MS.gene016925:intron | 20.0% |
| !!! | ATTTTTCAATGTCAACTAAT+AGG | + | chr5.1:70352973-70352992 | MS.gene016925:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | + | chr5.1:70351676-70351695 | MS.gene016925:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | + | chr5.1:70353248-70353267 | MS.gene016925:intron | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | + | chr5.1:70350976-70350995 | MS.gene016925:intron | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | + | chr5.1:70350947-70350966 | MS.gene016925:intron | 20.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | - | chr5.1:70353241-70353260 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | - | chr5.1:70351839-70351858 | None:intergenic | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | - | chr5.1:70352016-70352035 | None:intergenic | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | - | chr5.1:70352619-70352638 | None:intergenic | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | + | chr5.1:70351072-70351091 | MS.gene016925:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | + | chr5.1:70353195-70353214 | MS.gene016925:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | - | chr5.1:70353922-70353941 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | - | chr5.1:70351292-70351311 | None:intergenic | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | + | chr5.1:70351733-70351752 | MS.gene016925:intron | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | - | chr5.1:70353698-70353717 | None:intergenic | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | - | chr5.1:70352930-70352949 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | + | chr5.1:70353735-70353754 | MS.gene016925:intron | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | + | chr5.1:70351500-70351519 | MS.gene016925:intron | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | - | chr5.1:70353311-70353330 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | + | chr5.1:70352851-70352870 | MS.gene016925:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | + | chr5.1:70353193-70353212 | MS.gene016925:intron | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | + | chr5.1:70354614-70354633 | MS.gene016925:CDS | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | - | chr5.1:70353309-70353328 | None:intergenic | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | - | chr5.1:70351291-70351310 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | + | chr5.1:70353076-70353095 | MS.gene016925:intron | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | + | chr5.1:70352124-70352143 | MS.gene016925:intron | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | + | chr5.1:70354407-70354426 | MS.gene016925:CDS | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | - | chr5.1:70353619-70353638 | None:intergenic | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | - | chr5.1:70354607-70354626 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | + | chr5.1:70354560-70354579 | MS.gene016925:CDS | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | + | chr5.1:70352456-70352475 | MS.gene016925:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | - | chr5.1:70351780-70351799 | None:intergenic | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | + | chr5.1:70353822-70353841 | MS.gene016925:intron | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | - | chr5.1:70352810-70352829 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | + | chr5.1:70352266-70352285 | MS.gene016925:intron | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | + | chr5.1:70350948-70350967 | MS.gene016925:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | - | chr5.1:70354562-70354581 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | + | chr5.1:70351355-70351374 | MS.gene016925:intron | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | + | chr5.1:70350969-70350988 | MS.gene016925:intron | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | + | chr5.1:70351884-70351903 | MS.gene016925:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | - | chr5.1:70352423-70352442 | None:intergenic | 25.0% |
| AAAAGCTTTACATGTCTTCT+TGG | + | chr5.1:70353346-70353365 | MS.gene016925:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | + | chr5.1:70352696-70352715 | MS.gene016925:intron | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | - | chr5.1:70351895-70351914 | None:intergenic | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | - | chr5.1:70351278-70351297 | None:intergenic | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | + | chr5.1:70354598-70354617 | MS.gene016925:CDS | 30.0% | |
| AACTGTACTACACAATTTGT+CGG | - | chr5.1:70351445-70351464 | None:intergenic | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | - | chr5.1:70351586-70351605 | None:intergenic | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | - | chr5.1:70353166-70353185 | None:intergenic | 30.0% | |
| AATTTCAGAAGAGAAGATTG+AGG | + | chr5.1:70354521-70354540 | MS.gene016925:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | + | chr5.1:70351074-70351093 | MS.gene016925:intron | 30.0% | |
| ATAGAAAACATGACCAAAAG+CGG | - | chr5.1:70351660-70351679 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | + | chr5.1:70351446-70351465 | MS.gene016925:intron | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | - | chr5.1:70352047-70352066 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | + | chr5.1:70351907-70351926 | MS.gene016925:intron | 30.0% | |
| GACAAGAAAAAAAACCGAAA+GGG | - | chr5.1:70350841-70350860 | None:intergenic | 30.0% | |
| GAGATAAAATAACTCTGTTG+TGG | + | chr5.1:70351071-70351090 | MS.gene016925:intron | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | + | chr5.1:70351073-70351092 | MS.gene016925:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | - | chr5.1:70351495-70351514 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | - | chr5.1:70351279-70351298 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | + | chr5.1:70352129-70352148 | MS.gene016925:intron | 30.0% | |
| TACTTGCTTAATATTGATGC+CGG | + | chr5.1:70351049-70351068 | MS.gene016925:intron | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | + | chr5.1:70351547-70351566 | MS.gene016925:intron | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | + | chr5.1:70353319-70353338 | MS.gene016925:intron | 30.0% | |
| ! | AAAAAACAACCTTTTCAACG+AGG | - | chr5.1:70350864-70350883 | None:intergenic | 30.0% |
| ! | AAAAACAACCTTTTCAACGA+GGG | - | chr5.1:70350863-70350882 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | + | chr5.1:70354006-70354025 | MS.gene016925:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | - | chr5.1:70351598-70351617 | None:intergenic | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | - | chr5.1:70353893-70353912 | None:intergenic | 30.0% |
| ! | ATGAAGTACCTATATGCTTT+CGG | + | chr5.1:70351587-70351606 | MS.gene016925:intron | 30.0% |
| ! | ATGCTCATAGATATCGTTTT+GGG | + | chr5.1:70351334-70351353 | MS.gene016925:intron | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | + | chr5.1:70353867-70353886 | MS.gene016925:intron | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | - | chr5.1:70354481-70354500 | None:intergenic | 30.0% |
| !! | CAACAGAGTTATTTTATCTC+CGG | - | chr5.1:70351071-70351090 | None:intergenic | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | - | chr5.1:70354071-70354090 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | - | chr5.1:70353731-70353750 | None:intergenic | 30.0% |
| AAAAACCGAAAGGGTAAACA+AGG | - | chr5.1:70350832-70350851 | None:intergenic | 35.0% | |
| ACTAAGCAAATGCCCATTTA+TGG | - | chr5.1:70351516-70351535 | None:intergenic | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | + | chr5.1:70352178-70352197 | MS.gene016925:CDS | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | + | chr5.1:70352388-70352407 | MS.gene016925:CDS | 35.0% | |
| ATGATACGTTGTCATAGGTT+TGG | + | chr5.1:70351632-70351651 | MS.gene016925:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | + | chr5.1:70352164-70352183 | MS.gene016925:CDS | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | + | chr5.1:70352018-70352037 | MS.gene016925:intron | 35.0% | |
| CAGGAATATTACTCAGCAAA+AGG | - | chr5.1:70353665-70353684 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | + | chr5.1:70352384-70352403 | MS.gene016925:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | - | chr5.1:70351973-70351992 | None:intergenic | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | - | chr5.1:70352209-70352228 | None:intergenic | 35.0% | |
| GCATCTGTTAGAAATCTGTT+TGG | + | chr5.1:70351906-70351925 | MS.gene016925:intron | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | - | chr5.1:70353871-70353890 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | - | chr5.1:70353900-70353919 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | - | chr5.1:70350842-70350861 | None:intergenic | 35.0% | |
| TAAAATAACTCTGTTGTGGG+GGG | + | chr5.1:70351075-70351094 | MS.gene016925:intron | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | + | chr5.1:70351914-70351933 | MS.gene016925:intron | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | + | chr5.1:70351606-70351625 | MS.gene016925:intron | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | + | chr5.1:70353971-70353990 | MS.gene016925:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | + | chr5.1:70352165-70352184 | MS.gene016925:CDS | 35.0% | |
| TGTATGCAACTTGGGTTTAA+GGG | + | chr5.1:70351232-70351251 | MS.gene016925:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | + | chr5.1:70352475-70352494 | MS.gene016925:intron | 35.0% | |
| TTTAAATCTGAATCCGGATC+CGG | + | chr5.1:70354413-70354432 | MS.gene016925:CDS | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | + | chr5.1:70352501-70352520 | MS.gene016925:intron | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | + | chr5.1:70351333-70351352 | MS.gene016925:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | + | chr5.1:70352503-70352522 | MS.gene016925:intron | 35.0% |
| ! | GATCTACAGTTTTACTTCCT+TGG | - | chr5.1:70354203-70354222 | None:intergenic | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | + | chr5.1:70352502-70352521 | MS.gene016925:intron | 35.0% |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | + | chr5.1:70351246-70351265 | MS.gene016925:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | + | chr5.1:70353202-70353221 | MS.gene016925:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | + | chr5.1:70353170-70353189 | MS.gene016925:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | + | chr5.1:70353169-70353188 | MS.gene016925:intron | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | - | chr5.1:70354595-70354614 | None:intergenic | 35.0% |
| !! | ATTTTGAAGATGAACCGGAT+GGG | - | chr5.1:70354476-70354495 | None:intergenic | 35.0% |
| !! | CTATTTCGTACAAAGTGTTG+AGG | + | chr5.1:70351202-70351221 | MS.gene016925:intron | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | - | chr5.1:70354594-70354613 | None:intergenic | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | - | chr5.1:70353224-70353243 | None:intergenic | 35.0% |
| !! | TAGTGGATTGCAGAAAATAG+CGG | + | chr5.1:70351750-70351769 | MS.gene016925:intron | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | + | chr5.1:70354258-70354277 | MS.gene016925:CDS | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | - | chr5.1:70353333-70353352 | None:intergenic | 35.0% |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | + | chr5.1:70350952-70350971 | MS.gene016925:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | - | chr5.1:70354287-70354306 | None:intergenic | 35.0% |
| AAAGGGTAAACAAGGAAAGG+AGG | - | chr5.1:70350824-70350843 | None:intergenic | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | - | chr5.1:70351622-70351641 | None:intergenic | 40.0% | |
| AGAACAAATATAACCAGGGG+CGG | - | chr5.1:70353306-70353325 | None:intergenic | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | + | chr5.1:70353429-70353448 | MS.gene016925:CDS | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | - | chr5.1:70354309-70354328 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | - | chr5.1:70354552-70354571 | None:intergenic | 40.0% | |
| ATTTCATCCATGTCGTCATC+CGG | - | chr5.1:70354435-70354454 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | + | chr5.1:70352387-70352406 | MS.gene016925:CDS | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | - | chr5.1:70352204-70352223 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | - | chr5.1:70354351-70354370 | None:intergenic | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | - | chr5.1:70354308-70354327 | None:intergenic | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | + | chr5.1:70353611-70353630 | MS.gene016925:CDS | 40.0% | |
| GGCATATGATACGTTGTCAT+AGG | + | chr5.1:70351627-70351646 | MS.gene016925:intron | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | + | chr5.1:70351233-70351252 | MS.gene016925:intron | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | + | chr5.1:70353426-70353445 | MS.gene016925:CDS | 40.0% | |
| GTGTATGCAACTTGGGTTTA+AGG | + | chr5.1:70351231-70351250 | MS.gene016925:intron | 40.0% | |
| TAATGTAAGCCCAGAAATCG+AGG | + | chr5.1:70354296-70354315 | MS.gene016925:CDS | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | + | chr5.1:70352389-70352408 | MS.gene016925:CDS | 40.0% | |
| TATCAGAAAAGGACCATCCA+GGG | - | chr5.1:70354551-70354570 | None:intergenic | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | + | chr5.1:70351793-70351812 | MS.gene016925:intron | 40.0% | |
| TTTCTTGTCCCTCGTTGAAA+AGG | + | chr5.1:70350852-70350871 | MS.gene016925:intron | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | + | chr5.1:70350824-70350843 | MS.gene016925:intron | 40.0% |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | + | chr5.1:70354353-70354372 | MS.gene016925:CDS | 40.0% |
| ! | TCGACAACTGAACTTGTTTG+GGG | + | chr5.1:70353171-70353190 | MS.gene016925:intron | 40.0% |
| ! | TGGATGGTCCTTTTCTGATA+TGG | + | chr5.1:70354551-70354570 | MS.gene016925:CDS | 40.0% |
| !! | GATTTTGAAGATGAACCGGA+TGG | - | chr5.1:70354477-70354496 | None:intergenic | 40.0% |
| !! | TACTGGCTTGTGAATGCAAA+TGG | + | chr5.1:70353988-70354007 | MS.gene016925:intron | 40.0% |
| !! | TATGGATGATGGGTTTCTCT+TGG | + | chr5.1:70350987-70351006 | MS.gene016925:intron | 40.0% |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | + | chr5.1:70351205-70351224 | MS.gene016925:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | - | chr5.1:70354375-70354394 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | + | chr5.1:70353257-70353276 | MS.gene016925:intron | 40.0% |
| ACAGAACTCGCGCAAGAAAT+AGG | - | chr5.1:70353522-70353541 | None:intergenic | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | - | chr5.1:70354339-70354358 | None:intergenic | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | + | chr5.1:70354535-70354554 | MS.gene016925:CDS | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | - | chr5.1:70353688-70353707 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | - | chr5.1:70350827-70350846 | None:intergenic | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | - | chr5.1:70352483-70352502 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | - | chr5.1:70350810-70350829 | None:intergenic | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | + | chr5.1:70351794-70351813 | MS.gene016925:intron | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | + | chr5.1:70354531-70354550 | MS.gene016925:CDS | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | + | chr5.1:70354374-70354393 | MS.gene016925:CDS | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | + | chr5.1:70351457-70351476 | MS.gene016925:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | + | chr5.1:70354332-70354351 | MS.gene016925:CDS | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | + | chr5.1:70353715-70353734 | MS.gene016925:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | - | chr5.1:70354387-70354406 | None:intergenic | 45.0% | |
| AACATGCGCATACCAGTGGA+AGG | + | chr5.1:70354142-70354161 | MS.gene016925:CDS | 50.0% | |
| ACACCAACTCCTATCCCATC+CGG | + | chr5.1:70354459-70354478 | MS.gene016925:CDS | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | + | chr5.1:70354143-70354162 | MS.gene016925:CDS | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | + | chr5.1:70353472-70353491 | MS.gene016925:CDS | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | - | chr5.1:70353476-70353495 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | + | chr5.1:70353469-70353488 | MS.gene016925:CDS | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | + | chr5.1:70351806-70351825 | MS.gene016925:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | + | chr5.1:70351705-70351724 | MS.gene016925:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | - | chr5.1:70353286-70353305 | None:intergenic | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | - | chr5.1:70354471-70354490 | None:intergenic | 50.0% | |
| GAGGTGCGTGTATGCAACTT+GGG | + | chr5.1:70351224-70351243 | MS.gene016925:intron | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | - | chr5.1:70353287-70353306 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | - | chr5.1:70350811-70350830 | None:intergenic | 50.0% | |
| GGCTGTCATGCTGTGTACTA+CGG | + | chr5.1:70351698-70351717 | MS.gene016925:intron | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | + | chr5.1:70353590-70353609 | MS.gene016925:CDS | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | + | chr5.1:70351706-70351725 | MS.gene016925:intron | 50.0% | |
| ! | ACTCTGTTGTGGGGGGTTTT+TGG | + | chr5.1:70351082-70351101 | MS.gene016925:intron | 50.0% |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | - | chr5.1:70354197-70354216 | None:intergenic | 50.0% |
| ! | CATAGGTTTGGCACCGCTTT+TGG | + | chr5.1:70351644-70351663 | MS.gene016925:intron | 50.0% |
| AGGGGCGGTTCCTTTCATGT+AGG | - | chr5.1:70353291-70353310 | None:intergenic | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | + | chr5.1:70354144-70354163 | MS.gene016925:CDS | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | + | chr5.1:70354138-70354157 | MS.gene016925:CDS | 55.0% | |
| CGCATGTTCTCGCTGTGTGA+AGG | - | chr5.1:70354130-70354149 | None:intergenic | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | - | chr5.1:70353516-70353535 | None:intergenic | 55.0% | |
| GAACCGGATGGGATAGGAGT+TGG | - | chr5.1:70354465-70354484 | None:intergenic | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | - | chr5.1:70353441-70353460 | None:intergenic | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | - | chr5.1:70353288-70353307 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | + | chr5.1:70353278-70353297 | MS.gene016925:intron | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | + | chr5.1:70353290-70353309 | MS.gene016925:intron | 55.0% | |
| TCATGTAGGAGGGGTAGCCT+TGG | - | chr5.1:70353277-70353296 | None:intergenic | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | - | chr5.1:70354429-70354448 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | + | chr5.1:70353444-70353463 | MS.gene016925:CDS | 55.0% | |
| ! | GGAGGTGCGTGTATGCAACT+TGG | + | chr5.1:70351223-70351242 | MS.gene016925:intron | 55.0% |
| !! | GGATGGGATAGGAGTTGGTG+TGG | - | chr5.1:70354460-70354479 | None:intergenic | 55.0% |
| ATACCAGTGGAAGGGGCGGT+AGG | + | chr5.1:70354151-70354170 | MS.gene016925:CDS | 60.0% | |
| GCAAAGTGGTGTGCAGTGGC+AGG | - | chr5.1:70353684-70353703 | None:intergenic | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | + | chr5.1:70354152-70354171 | MS.gene016925:CDS | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | + | chr5.1:70354425-70354444 | MS.gene016925:CDS | 60.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | - | chr5.1:70351474-70351493 | None:intergenic | 60.0% |
| ACCAGTGGAAGGGGCGGTAG+GGG | + | chr5.1:70354153-70354172 | MS.gene016925:CDS | 65.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | + | chr5.1:70354147-70354166 | MS.gene016925:CDS | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | - | chr5.1:70354157-70354176 | None:intergenic | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | + | chr5.1:70354171-70354190 | MS.gene016925:CDS | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | + | chr5.1:70354159-70354178 | MS.gene016925:CDS | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | + | chr5.1:70354165-70354184 | MS.gene016925:CDS | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | + | chr5.1:70354164-70354183 | MS.gene016925:CDS | 70.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | + | chr5.1:70354177-70354196 | MS.gene016925:CDS | 75.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | + | chr5.1:70354163-70354182 | MS.gene016925:CDS | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | + | chr5.1:70354183-70354202 | MS.gene016925:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 70350781 | 70354659 | 70350781 | ID=MS.gene016925 |
| chr5.1 | mRNA | 70350781 | 70354659 | 70350781 | ID=MS.gene016925.t1;Parent=MS.gene016925 |
| chr5.1 | exon | 70350781 | 70350813 | 70350781 | ID=MS.gene016925.t1.exon1;Parent=MS.gene016925.t1 |
| chr5.1 | CDS | 70350781 | 70350813 | 70350781 | ID=cds.MS.gene016925.t1;Parent=MS.gene016925.t1 |
| chr5.1 | exon | 70352146 | 70352218 | 70352146 | ID=MS.gene016925.t1.exon2;Parent=MS.gene016925.t1 |
| chr5.1 | CDS | 70352146 | 70352218 | 70352146 | ID=cds.MS.gene016925.t1;Parent=MS.gene016925.t1 |
| chr5.1 | exon | 70352345 | 70352438 | 70352345 | ID=MS.gene016925.t1.exon3;Parent=MS.gene016925.t1 |
| chr5.1 | CDS | 70352345 | 70352438 | 70352345 | ID=cds.MS.gene016925.t1;Parent=MS.gene016925.t1 |
| chr5.1 | exon | 70353377 | 70353493 | 70353377 | ID=MS.gene016925.t1.exon4;Parent=MS.gene016925.t1 |
| chr5.1 | CDS | 70353377 | 70353493 | 70353377 | ID=cds.MS.gene016925.t1;Parent=MS.gene016925.t1 |
| chr5.1 | exon | 70353575 | 70353632 | 70353575 | ID=MS.gene016925.t1.exon5;Parent=MS.gene016925.t1 |
| chr5.1 | CDS | 70353575 | 70353632 | 70353575 | ID=cds.MS.gene016925.t1;Parent=MS.gene016925.t1 |
| chr5.1 | exon | 70354138 | 70354659 | 70354138 | ID=MS.gene016925.t1.exon6;Parent=MS.gene016925.t1 |
| chr5.1 | CDS | 70354138 | 70354659 | 70354138 | ID=cds.MS.gene016925.t1;Parent=MS.gene016925.t1 |
| Gene Sequence |
| Protein sequence |
