AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01698

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01698.t1 MTR_2g010790 90.736 421 34 3 1 418 1 419 0.0 667
MS.gene01698.t1 MTR_4g109950 54.430 158 65 4 232 387 150 302 6.61e-39 142
MS.gene01698.t1 MTR_3g070120 34.114 299 158 9 124 404 85 362 2.87e-34 131
MS.gene01698.t1 MTR_7g114600 30.921 152 83 4 150 290 68 208 2.32e-13 72.0
MS.gene01698.t1 MTR_4g109910 59.701 67 24 2 318 383 79 143 9.05e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01698.t1 AT1G61730 33.903 351 173 16 85 416 62 372 1.08e-27 113
MS.gene01698.t1 AT4G00390 30.923 401 218 14 14 406 6 355 1.15e-23 102
MS.gene01698.t1 AT1G11510 30.904 343 168 14 86 404 42 339 3.31e-21 94.7
MS.gene01698.t1 AT1G11510 30.030 333 155 12 86 404 42 310 8.63e-19 87.0
MS.gene01698.t1 AT4G25210 26.176 340 175 11 110 411 63 364 5.49e-15 76.3
MS.gene01698.t1 AT1G66420 36.090 133 69 4 158 286 53 173 2.25e-14 73.6
MS.gene01698.t1 AT2G01370 37.500 112 54 3 182 285 66 169 2.68e-13 70.1
MS.gene01698.t1 AT1G44810 27.148 291 118 9 6 286 3 209 6.79e-13 69.3
MS.gene01698.t1 AT4G01260 29.078 282 147 9 155 408 57 313 1.29e-11 65.9
MS.gene01698.t1 AT5G14280 42.105 95 45 3 205 289 63 157 2.20e-11 65.1
MS.gene01698.t1 AT2G25650 35.000 140 73 6 205 333 67 199 2.85e-11 65.1

Find 115 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGGCTTGGACTTGGGTT+TGG 0.137721 2.4:+72605833 None:intergenic
GAAGCAAGTGGTTTAACTTT+AGG 0.199493 2.4:+72605871 None:intergenic
TTGGGCTTGGACTTGGGTTT+GGG 0.211588 2.4:+72605834 None:intergenic
GATTCAGATTCAGCGGGTTT+AGG 0.217235 2.4:+72605976 None:intergenic
ATTGGGCTTGGGCTTGGACT+TGG 0.238543 2.4:+72605827 None:intergenic
AAGCAAGTGGTTTAACTTTA+GGG 0.240022 2.4:+72605872 None:intergenic
CAAGAAGAAATCAAGCAAAT+AGG 0.257807 2.4:-72605008 None:intergenic
TTGGAGCAAAATTGCTTCTA+AGG 0.274708 2.4:-72605392 MS.gene01698:CDS
ATTCAGATTCAGCGGGTTTA+GGG 0.293343 2.4:+72605977 None:intergenic
GCACCGGAGTTGATTGGGCT+TGG 0.293970 2.4:+72605815 None:intergenic
TGAATCGCGCTGAGGTGGTT+AGG 0.312947 2.4:-72605060 MS.gene01698:CDS
CACCGGAGTTGATTGGGCTT+GGG 0.331829 2.4:+72605816 None:intergenic
TTCTTCATTGACTACTTTGT+CGG 0.337038 2.4:+72606149 None:intergenic
GTGGGTTCCGATTTCTGTTC+CGG 0.345211 2.4:+72605907 None:intergenic
TTGGGCTTGGGCTTGGACTT+GGG 0.346800 2.4:+72605828 None:intergenic
GCGAGGCGTTTCTTTGGCTT+TGG 0.347433 2.4:+72606240 None:intergenic
TTGTGATTCTCAAAGGGCTT+GGG 0.351413 2.4:-72605609 MS.gene01698:CDS
TGGTCGGCACCGGAGTTGAT+TGG 0.353683 2.4:+72605809 None:intergenic
GTCAGATAGGGTTGAGTTGG+AGG 0.367989 2.4:-72605125 MS.gene01698:CDS
TGCTCTCTTATCATGAGCTT+TGG 0.370081 2.4:+72605432 None:intergenic
GCAGACTAGATTGGCATTGC+AGG 0.370825 2.4:-72605035 MS.gene01698:CDS
TTGATTATCATCTTCTTCTT+CGG 0.376104 2.4:+72606071 None:intergenic
TCAGAATCCGGTTCTGAATC+TGG 0.376206 2.4:-72605949 MS.gene01698:CDS
AAGAAGAAATCAAGCAAATA+GGG 0.379593 2.4:-72605007 None:intergenic
ACGAGAGCGAGGCGTTTCTT+TGG 0.380520 2.4:+72606234 None:intergenic
AGTGGTTTAACTTTAGGGTT+AGG 0.384389 2.4:+72605877 None:intergenic
GAGTTGATTGGGCTTGGGCT+TGG 0.387162 2.4:+72605821 None:intergenic
GGCACGCTTAGTTCCGGACT+TGG 0.392904 2.4:+72605789 None:intergenic
TTCAGCGGCACGCTTAGTTC+CGG 0.394238 2.4:+72605783 None:intergenic
GGTCGGCACCGGAGTTGATT+GGG 0.403820 2.4:+72605810 None:intergenic
TTCTGAACCGGAACAGAAAT+CGG 0.410111 2.4:-72605914 MS.gene01698:CDS
GCGGGTTTAGGGGTAGAGAT+AGG 0.413172 2.4:+72605988 None:intergenic
CTTGTGATTCTCAAAGGGCT+TGG 0.413788 2.4:-72605610 MS.gene01698:CDS
TCTCTTCAATTGCTGAGCAT+TGG 0.418880 2.4:+72605501 None:intergenic
GAATCGCGCTGAGGTGGTTA+GGG 0.419146 2.4:-72605059 MS.gene01698:CDS
CTCGTCGGAGGAAGAGGCGG+TGG 0.434145 2.4:+72606200 None:intergenic
GGGGTAGAGATAGGAGTAGA+AGG 0.435130 2.4:+72605997 None:intergenic
ACTCCGGTGCCGACCAAGTC+CGG 0.443071 2.4:-72605802 MS.gene01698:CDS
TCTGAATCCGGCTCAGAATC+CGG 0.447335 2.4:-72605961 MS.gene01698:CDS
TCGGAGGAAGAGGCGGTGGG+TGG 0.451878 2.4:+72606204 None:intergenic
TAAGAATGAAAGTGGAAAAG+TGG 0.453012 2.4:-72605263 MS.gene01698:CDS
TTCGGTTCCAGATTCAGAAC+CGG 0.454128 2.4:+72605942 None:intergenic
AACCGAATCTGATTCTGAAC+CGG 0.455116 2.4:-72605926 MS.gene01698:CDS
TCCATCTCCTTCTTCTTCTG+AGG 0.458431 2.4:+72606113 None:intergenic
GGAGAGGTGGAAGAAGTTGC+AGG 0.459564 2.4:-72605104 MS.gene01698:CDS
TTCCGGTTCAGAATCAGATT+CGG 0.461387 2.4:+72605924 None:intergenic
AAGGAAGCAGCTGCATTTCA+CGG 0.465241 2.4:-72605553 MS.gene01698:CDS
AATCACAAAGAGTGCTAAGA+AGG 0.466107 2.4:-72605338 MS.gene01698:CDS
TTGATCCTCGTCGGAGGAAG+AGG 0.466920 2.4:+72606194 None:intergenic
ATAGTTACTAAGAATGAAAG+TGG 0.473928 2.4:-72605271 MS.gene01698:CDS
GGAGTCAGATAGGGTTGAGT+TGG 0.474759 2.4:-72605128 MS.gene01698:CDS
TGTGATTCTCAAAGGGCTTG+GGG 0.482044 2.4:-72605608 MS.gene01698:CDS
GGGTATAGCTGTGCTGGATA+AGG 0.490129 2.4:-72605182 MS.gene01698:CDS
GGGTTGAGTTGGAGGAGAGG+TGG 0.490174 2.4:-72605117 MS.gene01698:CDS
GAGATAGGAGTAGAAGGAGG+AGG 0.494629 2.4:+72606003 None:intergenic
GGTTTAACTTTAGGGTTAGG+AGG 0.498539 2.4:+72605880 None:intergenic
TTCAGAACCGGATTCTGAGC+CGG 0.501712 2.4:+72605954 None:intergenic
CGCTTAGTTCCGGACTTGGT+CGG 0.508280 2.4:+72605793 None:intergenic
ACGAGCTTGTGATTCTCAAA+GGG 0.508640 2.4:-72605615 MS.gene01698:CDS
TCTAAGGAAGCTGAAGAAAA+CGG 0.508657 2.4:-72605376 MS.gene01698:CDS
GTTCCGGACTTGGTCGGCAC+CGG 0.509635 2.4:+72605799 None:intergenic
AAGAAAACCACCGGTGGTGG+TGG 0.509946 2.4:-72605727 MS.gene01698:CDS
AAATGGTGGTTCTGCTAGGA+AGG 0.513798 2.4:-72605302 MS.gene01698:CDS
AAGAAGAAAACCACCGGTGG+TGG 0.515031 2.4:-72605730 MS.gene01698:CDS
GAAGTTGCAGGCTGCCGAGA+TGG 0.515486 2.4:-72605092 MS.gene01698:CDS
TCATTGACTACTTTGTCGGC+TGG 0.515523 2.4:+72606153 None:intergenic
ATAGGGTTGAGTTGGAGGAG+AGG 0.516403 2.4:-72605120 MS.gene01698:CDS
GGTTAGGGAGCAGACTAGAT+TGG 0.517395 2.4:-72605044 MS.gene01698:CDS
AGATAGGAGTAGAAGGAGGA+GGG 0.520024 2.4:+72606004 None:intergenic
GAAGGAGATGGAGAAGAAGA+AGG 0.521213 2.4:-72606102 MS.gene01698:CDS
GACGAGCTTGTGATTCTCAA+AGG 0.523580 2.4:-72605616 MS.gene01698:CDS
AAACCCGCTGAATCTGAATC+CGG 0.523805 2.4:-72605973 MS.gene01698:CDS
CGGAGGAAGAGGCGGTGGGT+GGG 0.524036 2.4:+72606205 None:intergenic
GTTAAATTTGATGAGGCTGC+GGG 0.528643 2.4:-72605202 MS.gene01698:CDS
TGCTCAGCAATTGAAGAGAA+AGG 0.529680 2.4:-72605497 MS.gene01698:CDS
TTAACTTTAGGGTTAGGAGG+TGG 0.529972 2.4:+72605883 None:intergenic
GGCTGCGGGTATAGCTGTGC+TGG 0.534970 2.4:-72605188 MS.gene01698:CDS
GGTTAAATTTGATGAGGCTG+CGG 0.538193 2.4:-72605203 MS.gene01698:CDS
ATCATCAGAACCACCACCAC+CGG 0.552134 2.4:+72605717 None:intergenic
CAATTGAAGAGAAAGGTTCG+TGG 0.552666 2.4:-72605490 MS.gene01698:CDS
TTAGGGTTAGGAGGTGGAGT+GGG 0.559530 2.4:+72605889 None:intergenic
TGATGAGAATGAGGCGGAGG+AGG 0.559810 2.4:-72605698 MS.gene01698:CDS
GATTCATCCTCAGAAGAAGA+AGG 0.562296 2.4:-72606120 MS.gene01698:CDS
AATGCAGCTGCTTCCTTCAG+CGG 0.564243 2.4:+72605559 None:intergenic
GAGCCGGATTCAGATTCAGC+GGG 0.569467 2.4:+72605970 None:intergenic
TTTAGGGTTAGGAGGTGGAG+TGG 0.572126 2.4:+72605888 None:intergenic
AAAAGCGGTTTGGAATTGAT+GGG 0.574547 2.4:-72605151 MS.gene01698:CDS
TGATGATGAGAATGAGGCGG+AGG 0.577141 2.4:-72605701 MS.gene01698:CDS
TCCTCAGAAGAAGAAGGAGA+TGG 0.578512 2.4:-72606114 MS.gene01698:CDS
TTCATGGGCTTTGAAGCAAG+TGG 0.579960 2.4:+72605859 None:intergenic
GAGGAGGATGTGAAATTGAC+TGG 0.583042 2.4:-72605682 MS.gene01698:CDS
TCGTCGGAGGAAGAGGCGGT+GGG 0.588753 2.4:+72606201 None:intergenic
TGAAGGTGGTTGATCCTCGT+CGG 0.589745 2.4:+72606185 None:intergenic
GAAAGTGGAAAAGTGGAAAG+TGG 0.593025 2.4:-72605256 MS.gene01698:CDS
AGCCCAAGCCCAATCAACTC+CGG 0.593390 2.4:-72605818 MS.gene01698:CDS
GTTTCCAGTGTTACTTTCAG+CGG 0.600316 2.4:+72605768 None:intergenic
ATCCTCGTCGGAGGAAGAGG+CGG 0.601599 2.4:+72606197 None:intergenic
CACCGCCTCTTCCTCCGACG+AGG 0.604984 2.4:-72606199 MS.gene01698:CDS
GACTGGAAAGGATCCGCTGA+AGG 0.611489 2.4:-72605572 MS.gene01698:CDS
CGTGCCGCTGAAAGTAACAC+TGG 0.617938 2.4:-72605772 MS.gene01698:CDS
GGAAAAGTGGAAAGTGGTGT+TGG 0.619417 2.4:-72605250 MS.gene01698:CDS
AAAGCGGTTTGGAATTGATG+GGG 0.621162 2.4:-72605150 MS.gene01698:CDS
GTGGGTCGTCGACGAGAGCG+AGG 0.630460 2.4:+72606223 None:intergenic
TGGTTCTGATGATGAGAATG+AGG 0.631876 2.4:-72605707 MS.gene01698:CDS
CGTTCCAAGAAGAAAACCAC+CGG 0.642479 2.4:-72605736 MS.gene01698:CDS
TGAGCCGGATTCAGATTCAG+CGG 0.650032 2.4:+72605969 None:intergenic
TTCAGATTCAGCGGGTTTAG+GGG 0.652803 2.4:+72605978 None:intergenic
GTAGAGATAGGAGTAGAAGG+AGG 0.653610 2.4:+72606000 None:intergenic
CGAACTGGTTAAATTTGATG+AGG 0.653994 2.4:-72605209 MS.gene01698:CDS
ATCAGAACCACCACCACCGG+TGG 0.666036 2.4:+72605720 None:intergenic
AGGTGGTTGATCCTCGTCGG+AGG 0.667833 2.4:+72606188 None:intergenic
AAGCGGTTTGGAATTGATGG+GGG 0.669970 2.4:-72605149 MS.gene01698:CDS
GAAGAAATCGATGAAAGCTG+AGG 0.677405 2.4:-72605524 MS.gene01698:CDS
TCCAAGAAGAAAACCACCGG+TGG 0.717568 2.4:-72605733 MS.gene01698:CDS
TTCTGATGATGAGAATGAGG+CGG 0.722855 2.4:-72605704 MS.gene01698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATAGTTACTAAGAATGAAAG+TGG - chr2.4:72605984-72606003 MS.gene01698:CDS 25.0%
! TTGATTATCATCTTCTTCTT+CGG + chr2.4:72605187-72605206 None:intergenic 25.0%
ATTCAAAAACACTTCCATCT+CGG + chr2.4:72606180-72606199 None:intergenic 30.0%
TAAGAATGAAAGTGGAAAAG+TGG - chr2.4:72605992-72606011 MS.gene01698:CDS 30.0%
! AAGCAAGTGGTTTAACTTTA+GGG + chr2.4:72605386-72605405 None:intergenic 30.0%
! TTCTTCATTGACTACTTTGT+CGG + chr2.4:72605109-72605128 None:intergenic 30.0%
!! CATTTGATCTTTTCAAGGTT+TGG - chr2.4:72605844-72605863 MS.gene01698:CDS 30.0%
AAGGAAGCTCCTGTTAAAAA+TGG - chr2.4:72605936-72605955 MS.gene01698:CDS 35.0%
CGAACTGGTTAAATTTGATG+AGG - chr2.4:72606046-72606065 MS.gene01698:CDS 35.0%
TCTAAGGAAGCTGAAGAAAA+CGG - chr2.4:72605879-72605898 MS.gene01698:CDS 35.0%
TTGGAGCAAAATTGCTTCTA+AGG - chr2.4:72605863-72605882 MS.gene01698:CDS 35.0%
! AAAAAGCGGTTTGGAATTGA+TGG - chr2.4:72606103-72606122 MS.gene01698:CDS 35.0%
! AAAAGCGGTTTGGAATTGAT+GGG - chr2.4:72606104-72606123 MS.gene01698:CDS 35.0%
! GAAGCAAGTGGTTTAACTTT+AGG + chr2.4:72605387-72605406 None:intergenic 35.0%
! TTAAAAATGGTGGTTCTGCT+AGG - chr2.4:72605949-72605968 MS.gene01698:CDS 35.0%
!! AATCACAAAGAGTGCTAAGA+AGG - chr2.4:72605917-72605936 MS.gene01698:CDS 35.0%
!! AGTGGTTTAACTTTAGGGTT+AGG + chr2.4:72605381-72605400 None:intergenic 35.0%
!!! GAGAGCATTTGATCTTTTCA+AGG - chr2.4:72605839-72605858 MS.gene01698:CDS 35.0%
AACCGAATCTGATTCTGAAC+CGG - chr2.4:72605329-72605348 MS.gene01698:CDS 40.0%
ACGAGCTTGTGATTCTCAAA+GGG - chr2.4:72605640-72605659 MS.gene01698:CDS 40.0%
CAATTGAAGAGAAAGGTTCG+TGG - chr2.4:72605765-72605784 MS.gene01698:CDS 40.0%
GAAAGTGGAAAAGTGGAAAG+TGG - chr2.4:72605999-72606018 MS.gene01698:CDS 40.0%
GAAGAAATCGATGAAAGCTG+AGG - chr2.4:72605731-72605750 MS.gene01698:CDS 40.0%
GAAGCTCCTGTTAAAAATGG+TGG - chr2.4:72605939-72605958 MS.gene01698:CDS 40.0%
GATAAGGATGCTGCAAAAAG+CGG - chr2.4:72606089-72606108 MS.gene01698:CDS 40.0%
GATTCATCCTCAGAAGAAGA+AGG - chr2.4:72605135-72605154 MS.gene01698:CDS 40.0%
GGTTAAATTTGATGAGGCTG+CGG - chr2.4:72606052-72606071 MS.gene01698:CDS 40.0%
GTTAAATTTGATGAGGCTGC+GGG - chr2.4:72606053-72606072 MS.gene01698:CDS 40.0%
TCTCTTCAATTGCTGAGCAT+TGG + chr2.4:72605757-72605776 None:intergenic 40.0%
TGCTCAGCAATTGAAGAGAA+AGG - chr2.4:72605758-72605777 MS.gene01698:CDS 40.0%
TGCTCTCTTATCATGAGCTT+TGG + chr2.4:72605826-72605845 None:intergenic 40.0%
TTCCGGTTCAGAATCAGATT+CGG + chr2.4:72605334-72605353 None:intergenic 40.0%
TTCTGAACCGGAACAGAAAT+CGG - chr2.4:72605341-72605360 MS.gene01698:CDS 40.0%
TTGTGATTCTCAAAGGGCTT+GGG - chr2.4:72605646-72605665 MS.gene01698:CDS 40.0%
! AAAGCGGTTTGGAATTGATG+GGG - chr2.4:72606105-72606124 MS.gene01698:CDS 40.0%
! ATTCAGATTCAGCGGGTTTA+GGG + chr2.4:72605281-72605300 None:intergenic 40.0%
! GAGTTTCATTTTGAGCGAAC+TGG - chr2.4:72606031-72606050 MS.gene01698:CDS 40.0%
! TTCTGATGATGAGAATGAGG+CGG - chr2.4:72605551-72605570 MS.gene01698:CDS 40.0%
!! ACTTGGGTTTGGGTTTTCAT+GGG + chr2.4:72605414-72605433 None:intergenic 40.0%
!! GCAGAACCACCATTTTTAAC+AGG + chr2.4:72605948-72605967 None:intergenic 40.0%
!! GGTTTAACTTTAGGGTTAGG+AGG + chr2.4:72605378-72605397 None:intergenic 40.0%
!! GTTTCCAGTGTTACTTTCAG+CGG + chr2.4:72605490-72605509 None:intergenic 40.0%
!! TGGTTCTGATGATGAGAATG+AGG - chr2.4:72605548-72605567 MS.gene01698:CDS 40.0%
!! TTAACTTTAGGGTTAGGAGG+TGG + chr2.4:72605375-72605394 None:intergenic 40.0%
!!! GCGGGTTTTGAATCTTTTGA+AGG + chr2.4:72605222-72605241 None:intergenic 40.0%
!!! TACTTTGTCGGCTGGTTTTT+GGG + chr2.4:72605097-72605116 None:intergenic 40.0%
AAACCCGCTGAATCTGAATC+CGG - chr2.4:72605282-72605301 MS.gene01698:CDS 45.0%
AAGGAAGCAGCTGCATTTCA+CGG - chr2.4:72605702-72605721 MS.gene01698:CDS 45.0%
AATTGATGGGGGAGTCAGAT+AGG - chr2.4:72606117-72606136 MS.gene01698:CDS 45.0%
AGATAGGAGTAGAAGGAGGA+GGG + chr2.4:72605254-72605273 None:intergenic 45.0%
ATTGATGGGGGAGTCAGATA+GGG - chr2.4:72606118-72606137 MS.gene01698:CDS 45.0%
CGTTCCAAGAAGAAAACCAC+CGG - chr2.4:72605519-72605538 MS.gene01698:CDS 45.0%
CTTGTGATTCTCAAAGGGCT+TGG - chr2.4:72605645-72605664 MS.gene01698:CDS 45.0%
GAAGGAGATGGAGAAGAAGA+AGG - chr2.4:72605153-72605172 MS.gene01698:CDS 45.0%
GACGAGCTTGTGATTCTCAA+AGG - chr2.4:72605639-72605658 MS.gene01698:CDS 45.0%
GAGGAGGATGTGAAATTGAC+TGG - chr2.4:72605573-72605592 MS.gene01698:CDS 45.0%
GGAAAAGTGGAAAGTGGTGT+TGG - chr2.4:72606005-72606024 MS.gene01698:CDS 45.0%
GTAGAGATAGGAGTAGAAGG+AGG + chr2.4:72605258-72605277 None:intergenic 45.0%
TCCATCTCCTTCTTCTTCTG+AGG + chr2.4:72605145-72605164 None:intergenic 45.0%
TCCTCAGAAGAAGAAGGAGA+TGG - chr2.4:72605141-72605160 MS.gene01698:CDS 45.0%
TGTGATTCTCAAAGGGCTTG+GGG - chr2.4:72605647-72605666 MS.gene01698:CDS 45.0%
TTCGGTTCCAGATTCAGAAC+CGG + chr2.4:72605316-72605335 None:intergenic 45.0%
! AAATGGTGGTTCTGCTAGGA+AGG - chr2.4:72605953-72605972 MS.gene01698:CDS 45.0%
! AAGCGGTTTGGAATTGATGG+GGG - chr2.4:72606106-72606125 MS.gene01698:CDS 45.0%
! AGTAGAAGGAGGAGGGTTTT+TGG + chr2.4:72605247-72605266 None:intergenic 45.0%
! GATTCAGATTCAGCGGGTTT+AGG + chr2.4:72605282-72605301 None:intergenic 45.0%
! TCATTGACTACTTTGTCGGC+TGG + chr2.4:72605105-72605124 None:intergenic 45.0%
! TTCAGATTCAGCGGGTTTAG+GGG + chr2.4:72605280-72605299 None:intergenic 45.0%
! TTTTGTGGCGAAGACTGGAA+AGG - chr2.4:72605671-72605690 MS.gene01698:CDS 45.0%
!! AGTGTTTTTGAATCGCGCTG+AGG - chr2.4:72606187-72606206 MS.gene01698:CDS 45.0%
!! GACTTGGGTTTGGGTTTTCA+TGG + chr2.4:72605415-72605434 None:intergenic 45.0%
!! TCAGAATCCGGTTCTGAATC+TGG - chr2.4:72605306-72605325 MS.gene01698:CDS 45.0%
!! TTCATGGGCTTTGAAGCAAG+TGG + chr2.4:72605399-72605418 None:intergenic 45.0%
!!! CTACTTTGTCGGCTGGTTTT+TGG + chr2.4:72605098-72605117 None:intergenic 45.0%
AAGAAGAAAACCACCGGTGG+TGG - chr2.4:72605525-72605544 MS.gene01698:CDS 50.0%
AATGCAGCTGCTTCCTTCAG+CGG + chr2.4:72605699-72605718 None:intergenic 50.0%
ATCATCAGAACCACCACCAC+CGG + chr2.4:72605541-72605560 None:intergenic 50.0%
GAGATAGGAGTAGAAGGAGG+AGG + chr2.4:72605255-72605274 None:intergenic 50.0%
GCAGACTAGATTGGCATTGC+AGG - chr2.4:72606220-72606239 MS.gene01698:CDS 50.0%
GGAGTCAGATAGGGTTGAGT+TGG - chr2.4:72606127-72606146 MS.gene01698:CDS 50.0%
GGATGCTGCAAAAAGCGGTT+TGG - chr2.4:72606094-72606113 MS.gene01698:CDS 50.0%
GGGGTAGAGATAGGAGTAGA+AGG + chr2.4:72605261-72605280 None:intergenic 50.0%
GGGTATAGCTGTGCTGGATA+AGG - chr2.4:72606073-72606092 MS.gene01698:CDS 50.0%
GGTTAGGGAGCAGACTAGAT+TGG - chr2.4:72606211-72606230 MS.gene01698:CDS 50.0%
GTGGGTTCCGATTTCTGTTC+CGG + chr2.4:72605351-72605370 None:intergenic 50.0%
TCCAAGAAGAAAACCACCGG+TGG - chr2.4:72605522-72605541 MS.gene01698:CDS 50.0%
TCTGAATCCGGCTCAGAATC+CGG - chr2.4:72605294-72605313 MS.gene01698:CDS 50.0%
TGAAGGTGGTTGATCCTCGT+CGG + chr2.4:72605073-72605092 None:intergenic 50.0%
TGAGCCGGATTCAGATTCAG+CGG + chr2.4:72605289-72605308 None:intergenic 50.0%
TTAGGGTTAGGAGGTGGAGT+GGG + chr2.4:72605369-72605388 None:intergenic 50.0%
TTCAGAACCGGATTCTGAGC+CGG + chr2.4:72605304-72605323 None:intergenic 50.0%
TTGGGCTTGGACTTGGGTTT+GGG + chr2.4:72605424-72605443 None:intergenic 50.0%
! ACCACCGGTGGTTTTCTTCT+TGG + chr2.4:72605526-72605545 None:intergenic 50.0%
! CAAAGGGCTTGGGGATTTTG+TGG - chr2.4:72605656-72605675 MS.gene01698:CDS 50.0%
! GTTTTTGAATCGCGCTGAGG+TGG - chr2.4:72606190-72606209 MS.gene01698:CDS 50.0%
! TGATGATGAGAATGAGGCGG+AGG - chr2.4:72605554-72605573 MS.gene01698:CDS 50.0%
! TTTAGGGTTAGGAGGTGGAG+TGG + chr2.4:72605370-72605389 None:intergenic 50.0%
!! AGGAGGAGGGTTTTTGGAAG+CGG + chr2.4:72605241-72605260 None:intergenic 50.0%
!! ATAGGGTTGAGTTGGAGGAG+AGG - chr2.4:72606135-72606154 MS.gene01698:CDS 50.0%
!! GTCAGATAGGGTTGAGTTGG+AGG - chr2.4:72606130-72606149 MS.gene01698:CDS 50.0%
!!! GCTGGTTTTTGGGTTGAAGG+TGG + chr2.4:72605087-72605106 None:intergenic 50.0%
!!! TCGGCTGGTTTTTGGGTTGA+AGG + chr2.4:72605090-72605109 None:intergenic 50.0%
AGCCCAAGCCCAATCAACTC+CGG - chr2.4:72605437-72605456 MS.gene01698:CDS 55.0%
ATTGGGCTTGGGCTTGGACT+TGG + chr2.4:72605431-72605450 None:intergenic 55.0%
CTTGGGCTTGGACTTGGGTT+TGG + chr2.4:72605425-72605444 None:intergenic 55.0%
GAATCGCGCTGAGGTGGTTA+GGG - chr2.4:72606196-72606215 MS.gene01698:CDS 55.0%
GACTGGAAAGGATCCGCTGA+AGG - chr2.4:72605683-72605702 MS.gene01698:CDS 55.0%
GAGCCGGATTCAGATTCAGC+GGG + chr2.4:72605288-72605307 None:intergenic 55.0%
GCGGGTTTAGGGGTAGAGAT+AGG + chr2.4:72605270-72605289 None:intergenic 55.0%
GGAGAGGTGGAAGAAGTTGC+AGG - chr2.4:72606151-72606170 MS.gene01698:CDS 55.0%
TGAATCGCGCTGAGGTGGTT+AGG - chr2.4:72606195-72606214 MS.gene01698:CDS 55.0%
TGATGAGAATGAGGCGGAGG+AGG - chr2.4:72605557-72605576 MS.gene01698:CDS 55.0%
TTCAGCGGCACGCTTAGTTC+CGG + chr2.4:72605475-72605494 None:intergenic 55.0%
TTGATCCTCGTCGGAGGAAG+AGG + chr2.4:72605064-72605083 None:intergenic 55.0%
TTGGGCTTGGGCTTGGACTT+GGG + chr2.4:72605430-72605449 None:intergenic 55.0%
! AAGAAAACCACCGGTGGTGG+TGG - chr2.4:72605528-72605547 MS.gene01698:CDS 55.0%
! ACGAGAGCGAGGCGTTTCTT+TGG + chr2.4:72605024-72605043 None:intergenic 55.0%
! CACCGGAGTTGATTGGGCTT+GGG + chr2.4:72605442-72605461 None:intergenic 55.0%
! CGCTTAGTTCCGGACTTGGT+CGG + chr2.4:72605465-72605484 None:intergenic 55.0%
! CGTGCCGCTGAAAGTAACAC+TGG - chr2.4:72605483-72605502 MS.gene01698:CDS 55.0%
! GAGTTGATTGGGCTTGGGCT+TGG + chr2.4:72605437-72605456 None:intergenic 55.0%
! GCGAGGCGTTTCTTTGGCTT+TGG + chr2.4:72605018-72605037 None:intergenic 55.0%
! GGGGATTTTGTGGCGAAGAC+TGG - chr2.4:72605666-72605685 MS.gene01698:CDS 55.0%
!! GGAGGAGGGTTTTTGGAAGC+GGG + chr2.4:72605240-72605259 None:intergenic 55.0%
AGGTGGTTGATCCTCGTCGG+AGG + chr2.4:72605070-72605089 None:intergenic 60.0%
ATCAGAACCACCACCACCGG+TGG + chr2.4:72605538-72605557 None:intergenic 60.0%
ATCCTCGTCGGAGGAAGAGG+CGG + chr2.4:72605061-72605080 None:intergenic 60.0%
GAAGTTGCAGGCTGCCGAGA+TGG - chr2.4:72606163-72606182 MS.gene01698:CDS 60.0%
GGCACGCTTAGTTCCGGACT+TGG + chr2.4:72605469-72605488 None:intergenic 60.0%
! GCACCGGAGTTGATTGGGCT+TGG + chr2.4:72605443-72605462 None:intergenic 60.0%
! GGTCGGCACCGGAGTTGATT+GGG + chr2.4:72605448-72605467 None:intergenic 60.0%
! TGGTCGGCACCGGAGTTGAT+TGG + chr2.4:72605449-72605468 None:intergenic 60.0%
!! GGGTTGAGTTGGAGGAGAGG+TGG - chr2.4:72606138-72606157 MS.gene01698:CDS 60.0%
GGCTGCGGGTATAGCTGTGC+TGG - chr2.4:72606067-72606086 MS.gene01698:CDS 65.0%
TCGTCGGAGGAAGAGGCGGT+GGG + chr2.4:72605057-72605076 None:intergenic 65.0%
! GTTCCGGACTTGGTCGGCAC+CGG + chr2.4:72605459-72605478 None:intergenic 65.0%
!! ACTCCGGTGCCGACCAAGTC+CGG - chr2.4:72605453-72605472 MS.gene01698:CDS 65.0%
CACCGCCTCTTCCTCCGACG+AGG - chr2.4:72605056-72605075 MS.gene01698:CDS 70.0%
CGGAGGAAGAGGCGGTGGGT+GGG + chr2.4:72605053-72605072 None:intergenic 70.0%
CTCGTCGGAGGAAGAGGCGG+TGG + chr2.4:72605058-72605077 None:intergenic 70.0%
GTGGGTCGTCGACGAGAGCG+AGG + chr2.4:72605035-72605054 None:intergenic 70.0%
TCGGAGGAAGAGGCGGTGGG+TGG + chr2.4:72605054-72605073 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 72605009 72606268 72605009 ID=MS.gene01698
chr2.4 mRNA 72605009 72606268 72605009 ID=MS.gene01698.t1;Parent=MS.gene01698
chr2.4 exon 72605009 72606268 72605009 ID=MS.gene01698.t1.exon1;Parent=MS.gene01698.t1
chr2.4 CDS 72605009 72606268 72605009 ID=cds.MS.gene01698.t1;Parent=MS.gene01698.t1
Gene Sequence

>MS.gene01698

ATGGCGCCAAAGCCAAAGAAACGCCTCGCTCTCGTCGACGACCCACCCACCGCCTCTTCCTCCGACGAGGATCAACCACCTTCAACCCAAAAACCAGCCGACAAAGTAGTCAATGAAGAAGATGAAGATTCATCCTCAGAAGAAGAAGGAGATGGAGAAGAAGAAGGTTCTTCATCCGAAGAAGAAGATGATAATCAAACTCAACAAACTCCTTCAAAAGATTCAAAACCCGCTTCCAAAAACCCTCCTCCTTCTACTCCTATCTCTACCCCTAAACCCGCTGAATCTGAATCCGGCTCAGAATCCGGTTCTGAATCTGGAACCGAATCTGATTCTGAACCGGAACAGAAATCGGAACCCACTCCACCTCCTAACCCTAAAGTTAAACCACTTGCTTCAAAGCCCATGAAAACCCAAACCCAAGTCCAAGCCCAAGCCCAATCAACTCCGGTGCCGACCAAGTCCGGAACTAAGCGTGCCGCTGAAAGTAACACTGGAAACGATTCAAAACGTTCCAAGAAGAAAACCACCGGTGGTGGTGGTTCTGATGATGAGAATGAGGCGGAGGAGGATGTGAAATTGACTGGTGAAGACTCGAAGAAGAACTTTCAGAGATTGTTTAGTGAAGAAGACGAGCTTGTGATTCTCAAAGGGCTTGGGGATTTTGTGGCGAAGACTGGAAAGGATCCGCTGAAGGAAGCAGCTGCATTTCACGGTTTCGTGAAGAAATCGATGAAAGCTGAGGCCAATGCTCAGCAATTGAAGAGAAAGGTTCGTGGTTTGAAGAAGAAGTTTGAAAGCAGTGACAATTTTACCAAAGCTCATGATAAGAGAGCATTTGATCTTTTCAAGGTTTGGAGCAAAATTGCTTCTAAGGAAGCTGAAGAAAACGGAAAATCTAACGAGAAAATCACAAAGAGTGCTAAGAAGGAAGCTCCTGTTAAAAATGGTGGTTCTGCTAGGAAGGAATTAGCTATAGTTACTAAGAATGAAAGTGGAAAAGTGGAAAGTGGTGTTGGTAAGAGTTTCATTTTGAGCGAACTGGTTAAATTTGATGAGGCTGCGGGTATAGCTGTGCTGGATAAGGATGCTGCAAAAAGCGGTTTGGAATTGATGGGGGAGTCAGATAGGGTTGAGTTGGAGGAGAGGTGGAAGAAGTTGCAGGCTGCCGAGATGGAAGTGTTTTTGAATCGCGCTGAGGTGGTTAGGGAGCAGACTAGATTGGCATTGCAGGAACTCAAGAAGAAATCAAGCAAATAG
Protein sequence

>MS.gene01698.t1

MAPKPKKRLALVDDPPTASSSDEDQPPSTQKPADKVVNEEDEDSSSEEEGDGEEEGSSSEEEDDNQTQQTPSKDSKPASKNPPPSTPISTPKPAESESGSESGSESGTESDSEPEQKSEPTPPPNPKVKPLASKPMKTQTQVQAQAQSTPVPTKSGTKRAAESNTGNDSKRSKKKTTGGGGSDDENEAEEDVKLTGEDSKKNFQRLFSEEDELVILKGLGDFVAKTGKDPLKEAAAFHGFVKKSMKAEANAQQLKRKVRGLKKKFESSDNFTKAHDKRAFDLFKVWSKIASKEAEENGKSNEKITKSAKKEAPVKNGGSARKELAIVTKNESGKVESGVGKSFILSELVKFDEAAGIAVLDKDAAKSGLELMGESDRVELEERWKKLQAAEMEVFLNRAEVVREQTRLALQELKKKSSK