AlfalfaGEDB | MS.gene01723

M. sativa cultivar XinJiangDaYe / MS.gene01723

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01723.t1	RHN71805.1	90.4	810	70	3	1	802	13	822	0.00E+00	1468.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01723.t1	Q9SXB4	48.6	801	364	17	18	796	36	810	4.0e-206	719.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01723.t1	A0A396J5K8	90.4	810	70	3	1	802	13	822	0.0e+00	1468.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene01723.t1	MTR_2g011240	93.857	814	38	3	1	802	1	814	1539
MS.gene01723.t1	MTR_2g011230	78.729	818	151	8	5	802	18	832	1236
MS.gene01723.t1	MTR_2g011340	75.761	821	172	13	1	801	23	836	1236
MS.gene01723.t1	MTR_2g011270	74.486	827	180	12	1	802	1	821	1226
MS.gene01723.t1	MTR_2g011280	75.061	826	176	10	1	802	22	841	1214
MS.gene01723.t1	MTR_7g056430	55.324	817	328	17	5	802	361	1159	878
MS.gene01723.t1	MTR_7g056667	55.030	825	316	17	11	801	27	830	853
MS.gene01723.t1	MTR_7g056680	54.895	807	332	14	5	798	23	810	851
MS.gene01723.t1	MTR_7g056680	54.691	810	334	15	5	798	23	815	851
MS.gene01723.t1	MTR_7g056680	54.557	812	336	15	5	798	23	819	850

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene01723.t1	AT1G11300	49.189	801	359	18	18	796	36	810	740
MS.gene01723.t1	AT1G11330	48.280	814	380	16	12	799	33	831	739
MS.gene01723.t1	AT1G11330	48.034	814	380	16	12	799	33	829	736
MS.gene01723.t1	AT1G11300	49.061	799	346	17	18	795	36	794	733
MS.gene01723.t1	AT1G11303	47.893	783	364	18	15	779	33	789	702
MS.gene01723.t1	AT1G11350	48.831	813	371	19	12	796	25	820	702
MS.gene01723.t1	AT1G11330	49.378	723	325	15	12	708	33	740	665
MS.gene01723.t1	AT4G21390	44.895	813	389	19	5	778	22	814	662
MS.gene01723.t1	AT1G61610	43.256	823	425	15	4	798	24	832	656
MS.gene01723.t1	AT4G21380	43.627	816	397	18	6	782	28	819	639

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Find 129 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGATCCAGACAATC+AGG	0.414753	2.4:-72383961	None:intergenic
AAAATGAGGGCAGTACAAGA+AGG	0.596760	2.4:+72382815	MS.gene01723:CDS
AAACCAATACAAGATTCTTT+AGG	0.324590	2.4:+72379948	MS.gene01723:CDS
AAAGACTTACATATTCTAAG+AGG	0.488266	2.4:-72383729	None:intergenic
AAAGAGTAAAACTCACTTCA+TGG	0.377623	2.4:+72380213	MS.gene01723:CDS
AAATCAGGTGGTTTCGTCAT+CGG	0.532710	2.4:-72380794	None:intergenic
AACACAACAAATCGCTACGT+AGG	0.699691	2.4:+72379876	MS.gene01723:CDS
AACCCTTTCATTGCATATTC+TGG	0.269405	2.4:-72383604	None:intergenic
AACCGAGTTCTGAATAAGCT+TGG	0.534608	2.4:-72380988	None:intergenic
AAGACGCTTACACATAATTG+AGG	0.568529	2.4:+72382645	MS.gene01723:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATCTGACTTTGGCA+TGG	+	chr2.4:72382771-72382790	MS.gene01723:CDS	30.0%
AAAGAGTAAAACTCACTTCA+TGG	+	chr2.4:72380213-72380232	MS.gene01723:CDS	30.0%
AAAGTTCAGAATCTGGTTAT+TGG	-	chr2.4:72381169-72381188	None:intergenic	30.0%
AATAGACGAAATTGGACAAA+TGG	+	chr2.4:72380686-72380705	MS.gene01723:CDS	30.0%
ACAAACCTTGTAGTATTAGA+TGG	+	chr2.4:72379996-72380015	MS.gene01723:CDS	30.0%
ACAAGATATTACCAGGTTTA+AGG	-	chr2.4:72382732-72382751	None:intergenic	30.0%
ACTCCTAAAGAATCTTGTAT+TGG	-	chr2.4:72379954-72379973	None:intergenic	30.0%
AGCATTACAAGGAAAGATAA+TGG	+	chr2.4:72380419-72380438	MS.gene01723:CDS	30.0%
ATAACATAATCACCTTAGAC+GGG	-	chr2.4:72381129-72381148	None:intergenic	30.0%
ATAGACGAAATTGGACAAAT+GGG	+	chr2.4:72380687-72380706	MS.gene01723:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	72379759	72384185	72379759	ID=MS.gene01723
chr2.4	mRNA	72379759	72384185	72379759	ID=MS.gene01723.t1;Parent=MS.gene01723
chr2.4	exon	72379759	72381007	72379759	ID=MS.gene01723.t1.exon1;Parent=MS.gene01723.t1
chr2.4	CDS	72379759	72381007	72379759	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1
chr2.4	exon	72381230	72381340	72381230	ID=MS.gene01723.t1.exon2;Parent=MS.gene01723.t1
chr2.4	CDS	72381230	72381340	72381230	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1
chr2.4	exon	72381988	72382151	72381988	ID=MS.gene01723.t1.exon3;Parent=MS.gene01723.t1
chr2.4	CDS	72381988	72382151	72381988	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1
chr2.4	exon	72382239	72382449	72382239	ID=MS.gene01723.t1.exon4;Parent=MS.gene01723.t1
chr2.4	CDS	72382239	72382449	72382239	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1
chr2.4	exon	72382614	72382851	72382614	ID=MS.gene01723.t1.exon5;Parent=MS.gene01723.t1
chr2.4	CDS	72382614	72382851	72382614	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1
chr2.4	exon	72383591	72383741	72383591	ID=MS.gene01723.t1.exon6;Parent=MS.gene01723.t1
chr2.4	CDS	72383591	72383741	72383591	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1
chr2.4	exon	72383901	72384185	72383901	ID=MS.gene01723.t1.exon7;Parent=MS.gene01723.t1
chr2.4	CDS	72383901	72384185	72383901	ID=cds.MS.gene01723.t1;Parent=MS.gene01723.t1

Gene Sequence

>MS.gene01723

ATGATCAAAATTGCTAGTGCTTCTATGTACACAATTACATCTTCTCAATTGATCAAAGATTCGGAGACTATAAGCTCAAATGATGATGCATTCAAGCTTGGATTCTTCAGCCCGATGAACACAACAAATCGCTACGTAGGAATTTGGTATCTCAATCAATCCAACATCATATGGGTGGCCAACAGAGAAAAACCAATACAAGATTCTTTAGGAGTTATCACCATAGCTGATGACAACACAAACCTTGTAGTATTAGATGGAAATAAACATGTTATTTGGTCATCAAACGTCTCAAGTAATTTGGCAACCTCAAATTCTAATGTCACTGCTCAACTTCAAAATGAAGGAAATCTTGTTTTGCTTGAAGACAATATCATAATATGGGAGAGTATCAAGCATCCATCAAATACTTTCATAGGAAATATGATAATTAGCAGCAACCAAAAAACAGGTGAAAGAGTAAAACTCACTTCATGGAAAACTCCTTCAGATCCAGCTATTGGGAAATTCTCTGCTAGCATCGAGCGCCTCAATGCTCCTGAAATTTTTGTATGGAACCAAACAAATCCGTGTTGGCGCTCAGGTCCATGGAATGGTCAAGATTTTCTTGGTTGGACACATGTTTATAAGGCTTCTTCTTCTCCATATCTATTAGGTGTCAGCATTACAAGGAAAGATAATGGAAGTCTTGTTGAGTTTACATATACATTGCCAGATAGTTCTTTCTTTTTAACCCTTGTACTGAGTTCTGAAGGCAAGGTTGTGTATACTGCATGGATAAATAGGATTCAAGTTCGGAAGCTGTTTGTTCAACAAAATGATTGTGATCCTTATGGTATTTGTGGTCCTAATGGAAGCTGTGATTTGAAAAATTCTCCAATTTGTACATGTTTGACAGGTTTTAAGCCAAGAAATACGGACGAATGGAATAGACGAAATTGGACAAATGGGTGTGTGAGAAGGGCAGCACTACAGTGTGAGAGGGTGAAGCACAATGGGAGTTCATTAGGTGAAGAAGACGGGTTTCTAAAACTACCGATGACGAAACCACCTGATTTTGTAGAGCCATCATATATTCTTTCTCTTGACGAATGTAGAATTCATTGCTTGAATAATTGTTCTTGTGTTGCTTATGCATTTGATATTGGAATTAGGTGCCTGACTTGGAGTGGTAAGTTAATTGACATAGTCAGGTTTTCAACTAGTGGAGGCGTCGATCTTTACTTACGCCAAGCTTATTCAGAACTCGGTTAGTATGCATAGCTCATAGCTATAATATTTTGTTTATGTTTTCTTTGATAAGTATGTACAAAAAAATTTCTTCAACTTCCAGTTCAAAAATTGTCAAAGGTGTGGAAGTCTTGGGTCCCGTCTAAGGTGATTATGTTATGTTTAAAAAATAGTAGTCCAATAACCAGATTCTGAACTTTTTTTTTTTTGACAGCTATACATACAGATGGGACTCATACAGATGGCATTCATGGGAAGAGAAATATTACATCAATCATTATAGCTACTGTGATAGTGGGAGCAGTTATAGTTGCTATTTGTGCTTTTTTCTTTTGGTCATGGACGTCTAAACGTCAAGGTATATGTATTTTTAGACAGGGCCGGCCCATAGCCCGTCGAGGCTGGGCTATGGCACTGGGCCTCAGATTTTTGGGGGCCCAAGATATATTTTTTTTTTGTATGTAAAGCACTAAATTATTAATTATATACTTCTAAAGCGAAAAAATTTCATGTTGGTCACAGTGCTGTGGTGGCGCGGCCTCTCATGTTTTAATGTGAGGTCATGGGTTCAAGTCCCTCTTGAGTCCTTTTTTTAATAATTTTCTAATAATTTTCTTTTATAGTGCTTTATTTATTTTTTTGGGGCCTAAAATTCAATTTTTTTTACATCCCTTAAGAGACTAAAACTGGGCCTACGAATTTGTTAAGACGACCCTGTTTTTAGAACTTTCACATTTTCTTTATTACTTCCATGCTTAAAAAGAGTATTAGTAATCAAGAAGAAAACATATTCTCCATGTCCTATAGGGATATTTGACATTAAAAAAAGGTCTCGTTAACGAGTGTCCACATGACACTCTTTAAAGATCTCAAATTTAAAAAATATTTCTTAAAAAAGTCAAATGTTACAAATTTCAATGCATTGATTATACAGATTTTCATCAAAACCTACTATTAAAGGTGCTTAAAGAGTATAAAATTTTTTGGTATTGAACACAGGGCAAATCAATCATGAAAACCAAAGTGCAGATCTAATTGCACATGTTAAACAAGCTAAAATAGAAGACCTTCCTTTATTCGAGTTCAAAAATATTTTATCTGCAACAAATAACTTTGGTTCAGCTAATAAGATTGGTCAAGGTGGTTTTGGTTCAGTGTACAAGGTAAACTAAATCTTGTGATTTTTTTTTTTTATCTTTCTTAATATTTTGTATTAGAGATTTTCATTTTTCTTGAAAAAACAATTTTAGGGGGAATTGTTAGATGGACAAGAAATAGCAGTGAAACGACTTTCAGAAGGTTCAACACAAGGGTTAGAAGAATTTATGAACGAAGTGATTGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGTTGTTGCATTGAAGGGGAAGAAAAAATGTTGGTCTACGAATACATGCCGAATAATAGTTTAGATTTTTATCTATTTGGTTAGTACACCGTAACTTATTATTTCTTGTAAAATCATCATAAAACTTGTTCTTTCTTGAAATTCTTTTAATTAAAAAAAAAAAACTGTTATTTGACCAAAAGTTAGCATTTTGCAGCATCTTTTTTAGTTATACCTTACTTTCTAATGTTTTTGGCTTTGCAGACTCCGTAAAAAAGAAGATTTTTGATTGGCAAAGACGCTTACACATAATTGAGGGAATCTCTCGAGGATTGCTTTATCTTCATAGAGATTCAAGATTAAGAATAATACATAGAGACCTTAAACCTGGTAATATCTTGTTGGATGGAGAAATGAATCCAAAAATATCTGACTTTGGCATGGCCAAAACTTTTGGAGGCAATGAAAATGAGGGCAGTACAAGAAGGATTTTCGGAACATAGTAAGCATTACTTAAGCATTGCTTTATCTTTATATGAGTCCCTAGAATGTGCAATTGAATCGGTGTTTCATAATATAGGTGTATTGAATTTTAACCCCTTTACTTTTTTAATTGTACAATTTTGACCCCTTCAATTTTTTGTGTGTGATTATGGCCCTTCAAATCTACCCCTTTTCACATTTTGTAGCCCTCCACACAAATTTGTTGACACTGAAGTGGCAATTTTCTATGACATAGCATGGACATAGTGGATAATAGAAAATTAAAGCATTAAAATAAATCATTAGAATTTCATAAAAAATATTTTAAAAATTAACTATGACAAAATTCAATGTGTATTTGATAGGGGTTTGACCTACATTTGGATTTCAATTTTATGATAGTTAATTTTTAATGATAAAAATTGTTTTTTTTTTTTTTTATGAATTTTGTAAATTTCTAAAATTTATTTTAATCTTTTAATTTTCTAATGTCCACTTTGACCATGCCACCTCATAGAAAATCGCCACCTCAGCACCAAATCAAACAAAATTGAGTAGGGGGCTACACAAGATGAAAGGAGGTAATATTGAGGGTCAAAACTGAAAAAAAAAATTAAATAGGGGTGAGGTGTTTAAAAACGCACAATGAATTAGATAATAGAGGGGTTAAAAAAGCAATTAAGTCCATAATATAATGTAATATCATGTCAAGAGTCATACTAATAGTTTATTTTGATAGTGAAATTAATTAAATGCAGTGGATATATGTCTCCAGAATATGCAATGAAAGGGTTGTTTTCAGAGAAATCAGATATTTTTAGTTTTGGAGTTTTGCTCTTGGAGATAATAAGTGGTAGGAAAAACACAAGTTTTCATAATCATGAGCAAGCACTCACCCTCTTAGAATATGTAAGTCTTTCCAAATTGCTAATTTTGCCCAATATAGATTCATATAGTAAAGCTCTATTTTTTTTGCTATAATAATAATAATAATAATAATATACTCTTTCAAATTTGTATACATATACATGATGCTGTTTATTCTTCTTCTTTTTTGGTTTTTTTAAGGCGTGGAAAATATGGATTGAAGAGAATATTGTATCTTTGATAGATCCAGAAATATGTAAGCCTGATTGTCTGGATCAGATTTTGAGATGCATACATATTGGACTTCTTTGTGTGCAAGAAATTGCACAGGAGAGACCTACCATGGCCACAGTTGTTTCAATGCTTAATAGTGAGATTGTTAAACTTCCTCCTCCATCTCAACCTGCATTCCTTCTAAGTCAGACTGAGCATAGAGGAAATCACGACTCGAAAAACAGTGTCTCCATAAGCTTGCAAGGCAGATAA

Protein sequence

>MS.gene01723.t1

MIKIASASMYTITSSQLIKDSETISSNDDAFKLGFFSPMNTTNRYVGIWYLNQSNIIWVANREKPIQDSLGVITIADDNTNLVVLDGNKHVIWSSNVSSNLATSNSNVTAQLQNEGNLVLLEDNIIIWESIKHPSNTFIGNMIISSNQKTGERVKLTSWKTPSDPAIGKFSASIERLNAPEIFVWNQTNPCWRSGPWNGQDFLGWTHVYKASSSPYLLGVSITRKDNGSLVEFTYTLPDSSFFLTLVLSSEGKVVYTAWINRIQVRKLFVQQNDCDPYGICGPNGSCDLKNSPICTCLTGFKPRNTDEWNRRNWTNGCVRRAALQCERVKHNGSSLGEEDGFLKLPMTKPPDFVEPSYILSLDECRIHCLNNCSCVAYAFDIGIRCLTWSGKLIDIVRFSTSGGVDLYLRQAYSELDGIHGKRNITSIIIATVIVGAVIVAICAFFFWSWTSKRQINHENQSADLIAHVKQAKIEDLPLFEFKNILSATNNFGSANKIGQGGFGSVYKGELLDGQEIAVKRLSEGSTQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDFYLFDSVKKKIFDWQRRLHIIEGISRGLLYLHRDSRLRIIHRDLKPGNILLDGEMNPKISDFGMAKTFGGNENEGSTRRIFGTYGYMSPEYAMKGLFSEKSDIFSFGVLLLEIISGRKNTSFHNHEQALTLLEYAWKIWIEENIVSLIDPEICKPDCLDQILRCIHIGLLCVQEIAQERPTMATVVSMLNSEIVKLPPPSQPAFLLSQTEHRGNHDSKNSVSISLQGR