AlfalfaGEDB | MS.gene017232

M. sativa cultivar XinJiangDaYe / MS.gene017232

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017232.t1	XP_003616032.1	96.2	293	11	0	1	293	66	358	1.30E-148	535.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017232.t1	Q6S4P4	54.6	304	119	5	6	293	29	329	1.5e-73	277.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017232.t1	G7K0T5	96.2	293	11	0	1	293	66	358	9.0e-149	535.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene017232.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017232.t1	MTR_5g075390	97.952	293	6	0	1	293	66	358	0.0	591
MS.gene017232.t1	MTR_3g467120	70.031	327	62	6	1	293	53	377	7.67e-156	440
MS.gene017232.t1	MTR_3g094020	55.474	274	107	5	26	293	47	311	1.03e-89	270
MS.gene017232.t1	MTR_2g099050	55.607	214	51	5	24	193	107	320	3.25e-60	197
MS.gene017232.t1	MTR_6g034945	60.571	175	55	6	35	203	95	261	9.47e-54	177
MS.gene017232.t1	MTR_4g072090	73.684	114	30	0	79	192	345	458	6.32e-49	170
MS.gene017232.t1	MTR_4g072090	76.042	96	23	0	79	174	345	440	1.64e-40	146
MS.gene017232.t1	MTR_1g023690	57.639	144	51	2	59	192	342	485	8.08e-32	124
MS.gene017232.t1	MTR_2g090900	39.869	153	79	4	94	243	191	333	2.69e-21	92.4
MS.gene017232.t1	MTR_2g090900	50.538	93	46	0	94	186	191	283	3.36e-21	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017232.t1	AT2G40620	52.493	341	91	11	3	293	48	367	2.04e-91	276
MS.gene017232.t1	AT1G06850	57.249	269	88	7	29	282	70	326	4.84e-88	266
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	1.40e-61	199
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	4.77e-61	199
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	4.77e-61	199
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	4.77e-61	199
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	4.77e-61	199
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	4.77e-61	199
MS.gene017232.t1	AT2G31370	51.092	229	70	5	24	212	94	320	4.77e-61	199
MS.gene017232.t1	AT1G06070	52.358	212	67	4	24	202	108	318	2.05e-56	187

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Find 82 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGTATAGTGTCAGT+TGG	0.558403	5.2:+63366921	None:intergenic
AACATCCAGTTGCCATTATT+TGG	0.230060	5.2:-63366132	MS.gene017232:CDS
AACCTGGTATAGTGTCAGTT+GGG	0.543208	5.2:+63366922	None:intergenic
AATATGAATGAGAATTGGTT+TGG	0.494880	5.2:+63366073	None:intergenic
ACGGCGAGCCTCGATGAGAT+CGG	0.578645	5.2:-63369662	MS.gene017232:CDS
AGAAGAATCCGGTGAGGTCG+AGG	0.509126	5.2:-63369553	MS.gene017232:CDS
AGATCCAGGTGGAAACGATG+AGG	0.670305	5.2:-63369579	MS.gene017232:CDS
AGCTATGCCTCCTGATAAAT+TGG	0.296982	5.2:-63369468	MS.gene017232:CDS
AGCTCAGCCAATTTATCAGG+AGG	0.617494	5.2:+63369461	None:intergenic
AGGCGGAGAAGAATCCGGTG+AGG	0.721189	5.2:-63369559	MS.gene017232:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTCAAATACGTCAAATA+TGG	-	chr5.2:63368267-63368286	MS.gene017232:intron	30.0%
ACTCATAGAACTTACAAAGT+TGG	+	chr5.2:63368052-63368071	None:intergenic	30.0%
ATAAATAGGAGTGGTCAAAA+TGG	+	chr5.2:63366916-63366935	None:intergenic	30.0%
CACTAACAACTATATGTGTT+TGG	+	chr5.2:63368356-63368375	None:intergenic	30.0%
GTTAAAATGAAGCGAAATTG+AGG	-	chr5.2:63366416-63366435	MS.gene017232:intron	30.0%
TGCTAGATTTAAACAGATGA+GGG	+	chr5.2:63367497-63367516	None:intergenic	30.0%
TTGCTAGATTTAAACAGATG+AGG	+	chr5.2:63367498-63367517	None:intergenic	30.0%
AACATCCAGTTGCCATTATT+TGG	-	chr5.2:63369523-63369542	MS.gene017232:CDS	35.0%
AATAAGCTCCTTATCCAAAC+AGG	-	chr5.2:63366713-63366732	MS.gene017232:intron	35.0%
ACATAATCACTTCGGTGATT+TGG	-	chr5.2:63368998-63369017	MS.gene017232:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	63365948	63369729	63365948	ID=MS.gene017232
chr5.2	mRNA	63365948	63369729	63365948	ID=MS.gene017232.t1;Parent=MS.gene017232
chr5.2	exon	63369431	63369729	63369431	ID=MS.gene017232.t1.exon1;Parent=MS.gene017232.t1
chr5.2	CDS	63369431	63369729	63369431	ID=cds.MS.gene017232.t1;Parent=MS.gene017232.t1
chr5.2	exon	63366925	63367057	63366925	ID=MS.gene017232.t1.exon2;Parent=MS.gene017232.t1
chr5.2	CDS	63366925	63367057	63366925	ID=cds.MS.gene017232.t1;Parent=MS.gene017232.t1
chr5.2	exon	63366440	63366524	63366440	ID=MS.gene017232.t1.exon3;Parent=MS.gene017232.t1
chr5.2	CDS	63366440	63366524	63366440	ID=cds.MS.gene017232.t1;Parent=MS.gene017232.t1
chr5.2	exon	63365948	63366312	63365948	ID=MS.gene017232.t1.exon4;Parent=MS.gene017232.t1
chr5.2	CDS	63365948	63366312	63365948	ID=cds.MS.gene017232.t1;Parent=MS.gene017232.t1

Gene Sequence

>MS.gene017232

ATGATGGACCTCTCCCCTTCCGATCCATTCACCGGCGGATCATCAACGGCGAGCCTCGATGAGATCGGATCCGAAGATGACTTGTTCTCGACGTACATTGACATGGATAAGCTTGGAGATGGTGGAGCAGATCCAGGTGGAAACGATGAGGCGGAGAAGAATCCGGTGAGGTCGAGGCATCGGCATAGTAATTCGGTTGATGGGTCGAGTTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTGTTGATCCTAAGCGTGCCAAAAGGTTCGTAATTTTGATCTGATCGCGAAATAATGATTGTTTTCTACTTCAATTGTGTGTAGATTAGTTAATTTTTCAATGATGAGTATTTTTCTATGGTTTGAGTTTTTGTTAATTGGTTTTCAAGTTCTAAATTGAAGTTTTTTTTTATTAGTTTAGGGAATTTAAAATAGTTAAAATGAAGCGAAATTGAGGTTTGTTCTGTGTTCAATCTGTCGAACCTTCTCTCCGAGTTGTGCTAAGGGTCTGTTTGGAGTGACTTACTTGAATAAGTTTTGTGAGACTATCTAGGAGAACTTATGAAAAGAGCTTATGACATTTTTCATGAGCTTTTTTCAGATTATTTTAATAAGCTATCTTAGATGGCTTATGAAAACAGCTTACAGCATATACAAAAACAATTTAACTTTATTTTATCTTTTACTATTGAAATAACTTATCATGATAAAAACTTGTGCTATAAGCTGCAAATAAGCTCCTTATCCAAACAGGGTCTAAAACAATTAGATGTTTTGTCCTGTGTAGAACAATTCTTGTTCAAGTTTTACTCACCTTCCGGCCAAATTCCGGATTACAGGCCTCTTTCCCCTAAGGAGGGTTAATGCCAAAAATTATTAGATGTTGATTGACTAGTTTTCTTTCTAATGTGATATTCAAGTCCATTAGCAGCCATTTTGACCACTCCTATTTATGCAATGGGAGTGAACATGGCCGTTCCTATGAAATAGGAGGCTCGGCTCTCTTTTTAAAATAGGCCCCCTAAAATAAAAACCTAATTTTTTTGTGTAGCTAAACTTCATTAAAAAATCAGAATTAGAAGAACTTCTAAACATGAAACGAAATAAAAAAAAAAATTAAGTGAAAGAGAGGTGAAATTTACCTAACGGTGTCGTTTGGATTTATCATTCCTCCGTTGTGGGAAAGGGGAAGGAAACAAATGGTTTATGCGAAAAAGAAATGATTGTTGTGATTCTTTTTATTGAAATAGCTTTTCAAATTGACTGATTGAGTGATTATATAAATTGGGGGTGGTTTGGTAGCATCAGATTTATGTCCAAAGGAGAATTAGAGTCTAGAAAAAACTCAAATGTGTACCGAAGAAAGAAAAAGAAGTAACATATTTTTTTTAATTTAAGTGGGGTGTGGTATTAGACTTAATTTATTTTTTTGAGGCCCATAGGTTTTGGAGGCCCGGCTTGGTTGAGCTGCTTGCGCACCCCCAAGGCCGGGCCTGGGAGTGAAACACTTAACCCTCATCTGTTTAAATCTAGCAAGATAATCATCAACAGTTTCATCGACAGTTAGAGTGACCCTGGTATCACCCCTGTAAAATTGGTCTTGGAAATTTCTTTCCAATTATAAACAGAATTAGGTTTTAACATTGAAAACCAAGAAAAAACATTTTTAGTTAGGGAACTAGGAAAAAGTTTCATTTTCAACCCTTCATTGAGAACTAGTTCCCCTAATTCTGTCATGTATCTGGCTACATGTTCAATGGTTGATACTTTTCCCTATTGCTGAAATTTTTTAACTGAGTGTTTTCTTCTGTTGAGTTTTTGTTGATTGATTTTGAAGTTCTAAGTTGAATTTTTTTATTAGTTTATGGTATTTAAAATAAATAAGTGAAATTTAAGTTTGTTGTTTGTAATTGTGCTTGTGGTTTGAAATTTTCAGTTTAGTTGTTTTGATAATTTTTGTGTGGATTATGTTTGTTTGAATACTCGTCGCAATTATTTGACTGGGATGAGTTGGTTGTTGTGTGAAAGTCAACCTTATTATGTGATTCTAGATTGTACTAAGTTCAACCAACTTTGTAAGTTCTATGAGTAACTGAGGCATTGTTGGAATTGTATTTTTTTTTTCATTACTATTATTATTTTTTTAATAGTGATGAGGGGATGTGAAATTGTAATGATGTATCAATTGATAACTTGTAATTTATGATTAGAGATTAGAGGCCATTCAGAATCTTTTTGTATAAGCGCAAATCATTTGAATTTTGAGCTATCAACATATAATTATAAAGCTCAAATACGTCAAATATGGAAAAACATTAGTGTTTGACATGGATACAATATTGACACACTTCTGATACTTGCCAATAAATACCCAAACACATATAGTTGTTAGTGTATCTTGGTCGTGTTGTATTTGATTTTTAAAAAAATCGTAGTATCTGTGTCATATCATATCCACGTTGTTCTATGTAGATGGGCTTCTTAGATTTAAACTTTTGGGGGTGGAGGATAATGTGAGAGTGGGGTTTATGCAAGAGATACTAGCATTCTGCTCTCAAGTTTAATCTAATTTTCAATTGTAATAATTGTTGTGGATTTGTTTTGTTCATTCATCTCATTTTTACGTTGTTATGAATAGAATACTTGCTAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAACGCAAGGTTCAGACCCTACAGACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATACCAGGTTTGTGTTGACATTTATCTACAACGACAGCACTTTAAAAGTTCGATATTGCAGAGTAACTCTGTTTTGTTTATTGGATTTATTGATGTAGCTTAGAGCAATAAATTCAACTGCTTTGTTCATCATTTTCCTTGTGCCTTATTTCCTTGTTCCAATTATAGCTAAAAAATGACTTTTGGAAGCATTCTATTTGTATTTCTCTCAGAAATTCCTTTTATATAAAATGTTCTAGATATTTACTATACACATAATCACTTCGGTGATTTGGGTTTCAGTGTTATAACATAATGTTGCTTTGTTTGTGAATGGTTTACCGTGATTGTTTTCAGTTTTTACTCATACTTAAATTTGTGGCTAAATTAACCCAATCACTTCTTGATTATTTGTTTCTTTATTGTAGCGAGACACAACAGGTCTGAGTTCTGAAAATACAGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGGTAACAATTATCACCTTCTTACAATACGTTAAAAATGCTCACTTCATAACATTTTTTTCTGCTCAAACTTTTGAAGTGTGTTTGAAGTTAAATAACTCAACTGGGTTTTATTTGTCTTTTGCTGTAGCTCTTAATGATGCATTGAAGAAAGAAGTTGAGAGATTGAAGGTTGCTACTGGCGATATAATGAGCCACACTGAATCTTTTAATCTCGGTATGCACCAAATGCAATTTACTGAATCAAATTACGCTCCAATTCCACCACAAGGTCCTTCTGGTCACCGGAACATCCAGTTGCCATTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACCAATTCTCATTCATATTCAGAATTATTACAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAACAAAGGAACAACTGTTGTAAAGTCCGAAGATCCTTCTCTTTCTGCAAGTGAGAGTAGCACAACATTTTGA

Protein sequence

>MS.gene017232.t1

MMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGDGGADPGGNDEAEKNPVRSRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSVDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMHQMQFTESNYAPIPPQGPSGHRNIQLPLFGHSPSSMPSHQLHQTNSHSYSELLQNDQIGRFQGLDISNKGTTVVKSEDPSLSASESSTTF