Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017254.t1 | XP_003616071.2 | 88.3 | 154 | 13 | 3 | 1 | 151 | 9 | 160 | 7.00E-69 | 270.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017254.t1 | Q9FNN6 | 34.0 | 159 | 87 | 4 | 13 | 154 | 12 | 169 | 2.9e-15 | 84.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017254.t1 | G7K5U8 | 88.3 | 154 | 13 | 3 | 1 | 151 | 9 | 160 | 5.0e-69 | 270.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017254.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017254.t1 | MTR_5g075790 | 88.312 | 154 | 13 | 3 | 1 | 151 | 9 | 160 | 1.21e-92 | 273 |
| MS.gene017254.t1 | MTR_5g075760 | 84.967 | 153 | 20 | 2 | 1 | 151 | 1 | 152 | 5.80e-90 | 266 |
| MS.gene017254.t1 | MTR_1g083180 | 54.255 | 94 | 43 | 0 | 62 | 155 | 19 | 112 | 3.11e-26 | 102 |
| MS.gene017254.t1 | MTR_1g111830 | 33.831 | 201 | 106 | 7 | 9 | 191 | 20 | 211 | 1.79e-25 | 101 |
| MS.gene017254.t1 | MTR_8g063870 | 40.132 | 152 | 81 | 6 | 10 | 159 | 5 | 148 | 1.02e-24 | 100 |
| MS.gene017254.t1 | MTR_8g063600 | 40.268 | 149 | 79 | 5 | 8 | 148 | 5 | 151 | 2.04e-24 | 99.8 |
| MS.gene017254.t1 | MTR_3g462790 | 35.976 | 164 | 85 | 7 | 4 | 150 | 34 | 194 | 2.45e-19 | 86.3 |
| MS.gene017254.t1 | MTR_7g067080 | 35.256 | 156 | 82 | 6 | 12 | 150 | 34 | 187 | 4.06e-18 | 82.8 |
| MS.gene017254.t1 | MTR_4g111975 | 30.220 | 182 | 87 | 5 | 13 | 154 | 8 | 189 | 1.20e-17 | 81.3 |
| MS.gene017254.t1 | MTR_5g069710 | 34.375 | 160 | 86 | 7 | 7 | 150 | 23 | 179 | 2.28e-17 | 80.5 |
| MS.gene017254.t1 | MTR_5g088010 | 37.288 | 118 | 68 | 4 | 66 | 181 | 26 | 139 | 2.30e-16 | 77.0 |
| MS.gene017254.t1 | MTR_5g027570 | 51.282 | 78 | 37 | 1 | 105 | 181 | 93 | 170 | 2.97e-16 | 76.3 |
| MS.gene017254.t1 | MTR_5g081860 | 32.738 | 168 | 98 | 7 | 1 | 155 | 12 | 177 | 3.19e-15 | 73.9 |
| MS.gene017254.t1 | MTR_5g088060 | 48.101 | 79 | 39 | 2 | 105 | 181 | 273 | 351 | 5.57e-14 | 71.6 |
| MS.gene017254.t1 | MTR_5g488160 | 48.101 | 79 | 39 | 2 | 105 | 181 | 273 | 351 | 5.57e-14 | 71.6 |
| MS.gene017254.t1 | MTR_1589s0010 | 30.400 | 125 | 86 | 1 | 147 | 270 | 135 | 259 | 1.60e-13 | 69.3 |
| MS.gene017254.t1 | MTR_1g050895 | 28.947 | 114 | 81 | 0 | 157 | 270 | 90 | 203 | 1.09e-12 | 65.9 |
| MS.gene017254.t1 | MTR_1g050885 | 28.947 | 114 | 81 | 0 | 157 | 270 | 90 | 203 | 1.09e-12 | 65.9 |
| MS.gene017254.t1 | MTR_1g050875 | 28.947 | 114 | 81 | 0 | 157 | 270 | 90 | 203 | 1.09e-12 | 65.9 |
| MS.gene017254.t1 | MTR_4g107230 | 37.000 | 100 | 54 | 3 | 54 | 149 | 36 | 130 | 3.60e-12 | 65.5 |
| MS.gene017254.t1 | MTR_5g027550 | 56.250 | 48 | 20 | 1 | 105 | 151 | 78 | 125 | 5.81e-12 | 64.3 |
| MS.gene017254.t1 | MTR_2g090305 | 60.870 | 46 | 17 | 1 | 106 | 150 | 30 | 75 | 1.72e-11 | 62.0 |
| MS.gene017254.t1 | MTR_8g101650 | 38.542 | 96 | 51 | 3 | 94 | 188 | 97 | 185 | 2.90e-11 | 62.8 |
| MS.gene017254.t1 | MTR_5g037080 | 50.000 | 56 | 27 | 1 | 96 | 150 | 94 | 149 | 6.08e-11 | 62.0 |
| MS.gene017254.t1 | MTR_3g104370 | 41.837 | 98 | 51 | 3 | 106 | 199 | 93 | 188 | 7.34e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017254.t1 | AT5G04760 | 36.646 | 161 | 73 | 4 | 10 | 154 | 3 | 150 | 5.16e-22 | 91.7 |
| MS.gene017254.t1 | AT5G08520 | 35.404 | 161 | 82 | 5 | 13 | 154 | 12 | 169 | 1.71e-21 | 92.0 |
| MS.gene017254.t1 | AT3G10580 | 37.500 | 144 | 75 | 4 | 13 | 150 | 8 | 142 | 1.69e-20 | 88.2 |
| MS.gene017254.t1 | AT3G10580 | 37.500 | 144 | 75 | 4 | 13 | 150 | 8 | 142 | 2.92e-20 | 88.2 |
| MS.gene017254.t1 | AT5G23650 | 37.267 | 161 | 80 | 6 | 13 | 154 | 13 | 171 | 4.76e-19 | 85.9 |
| MS.gene017254.t1 | AT4G09450 | 37.143 | 140 | 78 | 4 | 12 | 149 | 6 | 137 | 3.63e-17 | 78.2 |
| MS.gene017254.t1 | AT2G38090 | 32.727 | 165 | 87 | 5 | 9 | 150 | 25 | 188 | 5.93e-17 | 79.3 |
| MS.gene017254.t1 | AT1G49010 | 30.726 | 179 | 86 | 6 | 13 | 154 | 8 | 185 | 1.12e-16 | 79.0 |
| MS.gene017254.t1 | AT5G05790 | 31.613 | 155 | 88 | 3 | 9 | 149 | 27 | 177 | 2.78e-16 | 77.0 |
| MS.gene017254.t1 | AT5G05790 | 31.613 | 155 | 88 | 3 | 9 | 149 | 27 | 177 | 2.78e-16 | 77.0 |
| MS.gene017254.t1 | AT3G11280 | 35.099 | 151 | 74 | 6 | 13 | 149 | 33 | 173 | 4.64e-15 | 73.6 |
| MS.gene017254.t1 | AT3G11280 | 35.099 | 151 | 74 | 6 | 13 | 149 | 33 | 173 | 4.64e-15 | 73.6 |
| MS.gene017254.t1 | AT1G70000 | 46.914 | 81 | 41 | 2 | 71 | 150 | 66 | 145 | 1.67e-12 | 66.2 |
| MS.gene017254.t1 | AT1G70000 | 46.914 | 81 | 41 | 2 | 71 | 150 | 66 | 145 | 1.67e-12 | 66.2 |
| MS.gene017254.t1 | AT5G47390 | 37.113 | 97 | 42 | 3 | 76 | 171 | 79 | 157 | 8.41e-12 | 65.1 |
| MS.gene017254.t1 | AT3G10590 | 28.205 | 156 | 92 | 4 | 8 | 146 | 2 | 154 | 1.07e-11 | 63.2 |
| MS.gene017254.t1 | AT5G61620 | 46.575 | 73 | 34 | 2 | 100 | 171 | 104 | 172 | 5.07e-11 | 62.4 |
Find 49 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGACAGCATCCCATTTA+AGG | 0.149200 | 5.2:+63674806 | MS.gene017254:intron |
| TCACATGCAACTTCCTTAAA+TGG | 0.175612 | 5.2:-63674819 | None:intergenic |
| GATGAATGTTGTTTGATTAT+AGG | 0.203513 | 5.2:+63675147 | MS.gene017254:CDS |
| AAGCATTTCCTTCACATAAA+TGG | 0.223126 | 5.2:+63673711 | MS.gene017254:CDS |
| TTCTTAGTCTTATTCTTAGT+TGG | 0.323967 | 5.2:-63673021 | None:intergenic |
| GAGGAATGCCCGATGATCTT+AGG | 0.346880 | 5.2:+63675003 | MS.gene017254:CDS |
| AGATTCATAAGAAGGGAAAT+TGG | 0.369394 | 5.2:+63673628 | MS.gene017254:CDS |
| AATAGCAAGAAAATCACCTT+TGG | 0.392842 | 5.2:+63675093 | MS.gene017254:CDS |
| GCTTTAGATGTTTCTAAGAA+AGG | 0.398687 | 5.2:-63675030 | None:intergenic |
| TTAGTCTTATTCTTAGTTGG+AGG | 0.415408 | 5.2:-63673018 | None:intergenic |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5.2:+63672853 | MS.gene017254:CDS |
| CACATGCAACTTCCTTAAAT+GGG | 0.465060 | 5.2:-63674818 | None:intergenic |
| GGGAATCGAGATTCATAAGA+AGG | 0.470381 | 5.2:+63673620 | MS.gene017254:CDS |
| TTTGAAGTCATCGGTACAAA+GGG | 0.475521 | 5.2:+63674976 | MS.gene017254:CDS |
| ATAGCAAGAAAATCACCTTT+GGG | 0.475870 | 5.2:+63675094 | MS.gene017254:CDS |
| GATTGAGAAGTCGTCTACTT+TGG | 0.478619 | 5.2:+63674864 | MS.gene017254:CDS |
| GCAATCCAAGATTGAAAAGA+AGG | 0.483901 | 5.2:+63675116 | MS.gene017254:CDS |
| GCATGGCTAGCACATTGACT+TGG | 0.494579 | 5.2:-63673684 | None:intergenic |
| ATGAACGACACAAATAATGA+TGG | 0.501312 | 5.2:+63672742 | MS.gene017254:CDS |
| TAAAGCAAATATTGATGTTG+TGG | 0.502113 | 5.2:+63675047 | MS.gene017254:CDS |
| CTAAGAAAGTGGTGAAACAT+TGG | 0.507701 | 5.2:+63673037 | MS.gene017254:CDS |
| AAGGTCTTCCTAAGATCATC+GGG | 0.510135 | 5.2:-63675011 | None:intergenic |
| TTGATGTACCATTTATGTGA+AGG | 0.524593 | 5.2:-63673719 | None:intergenic |
| ACTTTGGTCACGTTGGCAGA+TGG | 0.530474 | 5.2:+63674880 | MS.gene017254:CDS |
| GCAAATATTGATGTTGTGGA+AGG | 0.530645 | 5.2:+63675051 | MS.gene017254:CDS |
| TAAGAATAAGACTAAGAAAG+TGG | 0.531612 | 5.2:+63673026 | MS.gene017254:CDS |
| AAAGGTCTTCCTAAGATCAT+CGG | 0.531970 | 5.2:-63675012 | None:intergenic |
| TTGTTCGTCTAGACAAGCTA+TGG | 0.533727 | 5.2:+63674941 | MS.gene017254:CDS |
| ATGTGACTAGAAAACTAGAA+AGG | 0.536076 | 5.2:+63674836 | MS.gene017254:CDS |
| CATCGGTACAAAGGGAAAAG+AGG | 0.538839 | 5.2:+63674984 | MS.gene017254:CDS |
| AGGAAGTACAAGAAGGTCGA+TGG | 0.560186 | 5.2:+63672830 | MS.gene017254:CDS |
| CGTTCTCTTTGAATATCTTG+AGG | 0.562741 | 5.2:+63672810 | MS.gene017254:CDS |
| TTCAATCTTGGATTGCCCAA+AGG | 0.568217 | 5.2:-63675109 | None:intergenic |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5.2:+63672764 | MS.gene017254:CDS |
| TGGTCACGTTGGCAGATGGA+TGG | 0.574637 | 5.2:+63674884 | MS.gene017254:CDS |
| TAAGACAGTCTGTGGAGGAG+TGG | 0.579272 | 5.2:+63674909 | MS.gene017254:CDS |
| CTCAAGATATTCAAAGAGAA+CGG | 0.580373 | 5.2:-63672809 | None:intergenic |
| GGAATCGAGATTCATAAGAA+GGG | 0.583688 | 5.2:+63673621 | MS.gene017254:CDS |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5.2:+63672753 | MS.gene017254:CDS |
| GCATGACTTAGCACTCATTG+AGG | 0.603466 | 5.2:+63672918 | MS.gene017254:CDS |
| GGATGGTATAAGACAGTCTG+TGG | 0.607791 | 5.2:+63674901 | MS.gene017254:CDS |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5.2:+63672922 | MS.gene017254:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5.2:+63672758 | MS.gene017254:CDS |
| TATCTTGAGGAAGTACAAGA+AGG | 0.618040 | 5.2:+63672823 | MS.gene017254:CDS |
| GTCGTCTACTTTGGTCACGT+TGG | 0.619931 | 5.2:+63674873 | MS.gene017254:CDS |
| GGAAGTACAAGAAGGTCGAT+GGG | 0.635752 | 5.2:+63672831 | MS.gene017254:CDS |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5.2:+63672765 | MS.gene017254:CDS |
| TGGTATAAGACAGTCTGTGG+AGG | 0.680242 | 5.2:+63674904 | MS.gene017254:CDS |
| ATTGGAGTGAAGAAGAACAC+AGG | 0.701675 | 5.2:+63673055 | MS.gene017254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5.2:63673277-63673296 | MS.gene017254:intron | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5.2:63673276-63673295 | MS.gene017254:intron | 10.0% |
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5.2:63673277-63673296 | None:intergenic | 10.0% |
| !! | AAATAATCTTCAAATAACAA+AGG | - | chr5.2:63674444-63674463 | None:intergenic | 15.0% |
| !! | ATACATATAGCATAAAAAAT+AGG | - | chr5.2:63674276-63674295 | None:intergenic | 15.0% |
| !! | TAGGAAAGAAATATAAAAAA+TGG | - | chr5.2:63674403-63674422 | None:intergenic | 15.0% |
| !! | TTGAATTTCAACATTTAATT+CGG | - | chr5.2:63673903-63673922 | None:intergenic | 15.0% |
| !!! | AGTCAATTTAATTTATATCA+TGG | - | chr5.2:63673565-63673584 | None:intergenic | 15.0% |
| !!! | ATTTGAAGATTATTTGATTT+TGG | + | chr5.2:63674449-63674468 | MS.gene017254:intron | 15.0% |
| !!! | GATACGTTTATTTTTTTATT+AGG | + | chr5.2:63673348-63673367 | MS.gene017254:intron | 15.0% |
| !!! | TATTCATCAATAAATTTGTT+CGG | + | chr5.2:63674102-63674121 | MS.gene017254:intron | 15.0% |
| !!! | TCTTTGAAATAAAAGAATAT+CGG | + | chr5.2:63674675-63674694 | MS.gene017254:intron | 15.0% |
| !!! | TTAACAATCGATTTTTTAAA+AGG | - | chr5.2:63674195-63674214 | None:intergenic | 15.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5.2:63673179-63673198 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATCGATTGTTA+AGG | + | chr5.2:63674194-63674213 | MS.gene017254:intron | 15.0% |
| !! | AAGAAATACAAAATATCTCT+TGG | - | chr5.2:63674082-63674101 | None:intergenic | 20.0% |
| !! | AGAAATACAAAATATCTCTT+GGG | - | chr5.2:63674081-63674100 | None:intergenic | 20.0% |
| !! | ATACATATAGCATAATTACA+TGG | - | chr5.2:63674348-63674367 | None:intergenic | 20.0% |
| !! | CATTACATTAGAAATTGAAA+AGG | + | chr5.2:63674241-63674260 | MS.gene017254:intron | 20.0% |
| !! | TACATATAGCATAATTACAT+GGG | - | chr5.2:63674347-63674366 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5.2:63673476-63673495 | MS.gene017254:intron | 20.0% |
| !! | TTCAATTTGTATTACTATCA+AGG | + | chr5.2:63673918-63673937 | MS.gene017254:intron | 20.0% |
| !! | TTGAATATGAAAAATAGATG+AGG | + | chr5.2:63674485-63674504 | MS.gene017254:intron | 20.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5.2:63672753-63672772 | MS.gene017254:CDS | 20.0% |
| !!! | AATCGATTTTTTAAAAGGAT+CGG | - | chr5.2:63674190-63674209 | None:intergenic | 20.0% |
| !!! | ACAAATGATTTTATTTCGAA+AGG | + | chr5.2:63672967-63672986 | MS.gene017254:CDS | 20.0% |
| !!! | CTTTTCAATTTCTAATGTAA+TGG | - | chr5.2:63674243-63674262 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5.2:63673477-63673496 | None:intergenic | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5.2:63673600-63673619 | MS.gene017254:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5.2:63673599-63673618 | MS.gene017254:intron | 20.0% |
| ! | AAAAATCGATTGTTAAGGAT+TGG | + | chr5.2:63674199-63674218 | MS.gene017254:intron | 25.0% |
| ! | AAATACAAAATATCTCTTGG+GGG | - | chr5.2:63674079-63674098 | None:intergenic | 25.0% |
| ! | AATATGAAAAATAGATGAGG+TGG | + | chr5.2:63674488-63674507 | MS.gene017254:intron | 25.0% |
| ! | ATTGTGTACAATTGTTTACA+TGG | + | chr5.2:63674529-63674548 | MS.gene017254:intron | 25.0% |
| ! | CCTATAAAAAAAATGATGAG+AGG | - | chr5.2:63673589-63673608 | None:intergenic | 25.0% |
| ! | GAAATACAAAATATCTCTTG+GGG | - | chr5.2:63674080-63674099 | None:intergenic | 25.0% |
| ! | TAAAGCAAATATTGATGTTG+TGG | + | chr5.2:63675047-63675066 | MS.gene017254:CDS | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5.2:63673026-63673045 | MS.gene017254:CDS | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5.2:63673462-63673481 | MS.gene017254:intron | 25.0% |
| ! | TCAATCAATTTCTCATGTAA+TGG | - | chr5.2:63674299-63674318 | None:intergenic | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5.2:63673470-63673489 | None:intergenic | 25.0% |
| ! | TTAGAAATTGAAAAGGTTGA+AGG | + | chr5.2:63674248-63674267 | MS.gene017254:intron | 25.0% |
| ! | TTCATATTCAATTGTCTTGA+AGG | - | chr5.2:63674476-63674495 | None:intergenic | 25.0% |
| !! | GATGAATGTTGTTTGATTAT+AGG | + | chr5.2:63675147-63675166 | MS.gene017254:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5.2:63673127-63673146 | MS.gene017254:intron | 25.0% |
| !!! | CCTCTCATCATTTTTTTTAT+AGG | + | chr5.2:63673586-63673605 | MS.gene017254:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5.2:63673314-63673333 | MS.gene017254:intron | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5.2:63673024-63673043 | None:intergenic | 25.0% |
| AAAGGAGAATCTGCAAAAAA+TGG | - | chr5.2:63674426-63674445 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5.2:63673428-63673447 | None:intergenic | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5.2:63673711-63673730 | MS.gene017254:CDS | 30.0% | |
| AATACAAAATATCTCTTGGG+GGG | - | chr5.2:63674078-63674097 | None:intergenic | 30.0% | |
| AATAGCAAGAAAATCACCTT+TGG | + | chr5.2:63675093-63675112 | MS.gene017254:CDS | 30.0% | |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5.2:63673427-63673446 | None:intergenic | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5.2:63673628-63673647 | MS.gene017254:CDS | 30.0% | |
| AGTAGAATAAAACCACATGT+AGG | - | chr5.2:63674036-63674055 | None:intergenic | 30.0% | |
| ATAGCAAGAAAATCACCTTT+GGG | + | chr5.2:63675094-63675113 | MS.gene017254:CDS | 30.0% | |
| ATGAACGACACAAATAATGA+TGG | + | chr5.2:63672742-63672761 | MS.gene017254:CDS | 30.0% | |
| ATGTGACTAGAAAACTAGAA+AGG | + | chr5.2:63674836-63674855 | MS.gene017254:CDS | 30.0% | |
| CTCAAGATATTCAAAGAGAA+CGG | - | chr5.2:63672812-63672831 | None:intergenic | 30.0% | |
| TAAGATACCAAGTTTGTCTT+TGG | + | chr5.2:63674146-63674165 | MS.gene017254:intron | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5.2:63673768-63673787 | MS.gene017254:intron | 30.0% | |
| TTCAACATTTAATTCGGATG+AGG | - | chr5.2:63673897-63673916 | None:intergenic | 30.0% | |
| TTGATGTACCATTTATGTGA+AGG | - | chr5.2:63673722-63673741 | None:intergenic | 30.0% | |
| ! | ATGGTATTACAAAGCTTTTG+AGG | - | chr5.2:63674782-63674801 | None:intergenic | 30.0% |
| ! | GCTTTAGATGTTTCTAAGAA+AGG | - | chr5.2:63675033-63675052 | None:intergenic | 30.0% |
| ! | TTATTCTACTTCTTGGGTTT+TGG | + | chr5.2:63674046-63674065 | MS.gene017254:intron | 30.0% |
| ! | TTCTTCCTTCTTTTCAATCT+TGG | - | chr5.2:63675124-63675143 | None:intergenic | 30.0% |
| !! | GAATTGAACTCTTTTGAGTA+TGG | + | chr5.2:63673973-63673992 | MS.gene017254:intron | 30.0% |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5.2:63673021-63673040 | None:intergenic | 30.0% |
| !!! | ATTTTATTTTGTGTCCGCTT+GGG | + | chr5.2:63674583-63674602 | MS.gene017254:intron | 30.0% |
| !!! | GTGGTTTTATTCTACTTCTT+GGG | + | chr5.2:63674040-63674059 | MS.gene017254:intron | 30.0% |
| !!! | TATTACAAAGCTTTTGAGGT+TGG | - | chr5.2:63674778-63674797 | None:intergenic | 30.0% |
| !!! | TGTGGTTTTATTCTACTTCT+TGG | + | chr5.2:63674039-63674058 | MS.gene017254:intron | 30.0% |
| !!! | TTGGTTGATTTTGAAGTCAT+CGG | + | chr5.2:63674967-63674986 | MS.gene017254:CDS | 30.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5.2:63672765-63672784 | MS.gene017254:CDS | 35.0% | |
| AAAGGTCTTCCTAAGATCAT+CGG | - | chr5.2:63675015-63675034 | None:intergenic | 35.0% | |
| AATTGACAGCATCCCATTTA+AGG | + | chr5.2:63674806-63674825 | MS.gene017254:intron | 35.0% | |
| ATCTCATCCAAAGACAAACT+TGG | - | chr5.2:63674156-63674175 | None:intergenic | 35.0% | |
| CACATGCAACTTCCTTAAAT+GGG | - | chr5.2:63674821-63674840 | None:intergenic | 35.0% | |
| CGTTCTCTTTGAATATCTTG+AGG | + | chr5.2:63672810-63672829 | MS.gene017254:CDS | 35.0% | |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5.2:63673037-63673056 | MS.gene017254:CDS | 35.0% | |
| CTAATTGTTCTTTACCCAAG+CGG | - | chr5.2:63674600-63674619 | None:intergenic | 35.0% | |
| CTTCAACATTACCTCATTGA+AGG | + | chr5.2:63673767-63673786 | MS.gene017254:intron | 35.0% | |
| GAGAATCTGCAAAAAATGGT+AGG | - | chr5.2:63674422-63674441 | None:intergenic | 35.0% | |
| GCAAATATTGATGTTGTGGA+AGG | + | chr5.2:63675051-63675070 | MS.gene017254:CDS | 35.0% | |
| GCAATCCAAGATTGAAAAGA+AGG | + | chr5.2:63675116-63675135 | MS.gene017254:CDS | 35.0% | |
| GGAATCGAGATTCATAAGAA+GGG | + | chr5.2:63673621-63673640 | MS.gene017254:CDS | 35.0% | |
| TATATTCGCGTGAAAACAGT+TGG | - | chr5.2:63674371-63674390 | None:intergenic | 35.0% | |
| TCACATGCAACTTCCTTAAA+TGG | - | chr5.2:63674822-63674841 | None:intergenic | 35.0% | |
| TGTCTTTGGATGAGATAGAT+AGG | + | chr5.2:63674160-63674179 | MS.gene017254:intron | 35.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5.2:63672758-63672777 | MS.gene017254:CDS | 35.0% |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5.2:63673200-63673219 | MS.gene017254:intron | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5.2:63672853-63672872 | MS.gene017254:CDS | 35.0% |
| ! | GTTCGGATTTTGCAAATGAT+AGG | + | chr5.2:63674119-63674138 | MS.gene017254:intron | 35.0% |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5.2:63672823-63672842 | MS.gene017254:CDS | 35.0% |
| ! | TCTAGACAAGCTATGGTTTT+TGG | + | chr5.2:63674948-63674967 | MS.gene017254:CDS | 35.0% |
| ! | TTTGAAGTCATCGGTACAAA+GGG | + | chr5.2:63674976-63674995 | MS.gene017254:CDS | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5.2:63673214-63673233 | MS.gene017254:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5.2:63673215-63673234 | MS.gene017254:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5.2:63673423-63673442 | MS.gene017254:intron | 35.0% |
| !!! | CATTTTATTTTGTGTCCGCT+TGG | + | chr5.2:63674582-63674601 | MS.gene017254:intron | 35.0% |
| !!! | TTTTGAAGTCATCGGTACAA+AGG | + | chr5.2:63674975-63674994 | MS.gene017254:CDS | 35.0% |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5.2:63673840-63673859 | None:intergenic | 40.0% | |
| AAGGTCTTCCTAAGATCATC+GGG | - | chr5.2:63675014-63675033 | None:intergenic | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5.2:63673807-63673826 | None:intergenic | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5.2:63673055-63673074 | MS.gene017254:CDS | 40.0% | |
| CGCGATTAAGTTTGATGAAG+AGG | + | chr5.2:63674737-63674756 | MS.gene017254:intron | 40.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5.2:63672764-63672783 | MS.gene017254:CDS | 40.0% | |
| GATTGAGAAGTCGTCTACTT+TGG | + | chr5.2:63674864-63674883 | MS.gene017254:CDS | 40.0% | |
| GGGAATCGAGATTCATAAGA+AGG | + | chr5.2:63673620-63673639 | MS.gene017254:CDS | 40.0% | |
| GGGATGCTGTCAATTATACA+TGG | - | chr5.2:63674801-63674820 | None:intergenic | 40.0% | |
| TTCAATCTTGGATTGCCCAA+AGG | - | chr5.2:63675112-63675131 | None:intergenic | 40.0% | |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5.2:63673797-63673816 | MS.gene017254:intron | 40.0% | |
| TTGTTCGTCTAGACAAGCTA+TGG | + | chr5.2:63674941-63674960 | MS.gene017254:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5.2:63673704-63673723 | None:intergenic | 40.0% |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5.2:63673220-63673239 | None:intergenic | 40.0% |
| ! | TTGAGGTTGGAGAGTTTTTC+TGG | - | chr5.2:63674765-63674784 | None:intergenic | 40.0% |
| ! | TTGCACTCTTTTCCTACATG+TGG | + | chr5.2:63674021-63674040 | MS.gene017254:intron | 40.0% |
| AGAGCTGGAACATAGAGAAG+AGG | - | chr5.2:63673867-63673886 | None:intergenic | 45.0% | |
| CATCGGTACAAAGGGAAAAG+AGG | + | chr5.2:63674984-63675003 | MS.gene017254:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5.2:63673159-63673178 | None:intergenic | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5.2:63672922-63672941 | MS.gene017254:CDS | 45.0% | |
| GAGCTGGAACATAGAGAAGA+GGG | - | chr5.2:63673866-63673885 | None:intergenic | 45.0% | |
| GCATGACTTAGCACTCATTG+AGG | + | chr5.2:63672918-63672937 | MS.gene017254:CDS | 45.0% | |
| GGAATGATCTCCCTTCAATG+AGG | - | chr5.2:63673781-63673800 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5.2:63673882-63673901 | None:intergenic | 45.0% | |
| GGATGGTATAAGACAGTCTG+TGG | + | chr5.2:63674901-63674920 | MS.gene017254:CDS | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5.2:63673802-63673821 | None:intergenic | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5.2:63673844-63673863 | None:intergenic | 45.0% | |
| TGGTATAAGACAGTCTGTGG+AGG | + | chr5.2:63674904-63674923 | MS.gene017254:CDS | 45.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5.2:63672830-63672849 | MS.gene017254:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5.2:63672831-63672850 | MS.gene017254:CDS | 45.0% |
| !! | ATAAAAAAAAAAATTGTTAT+TGG | + | chr5.2:63673517-63673536 | MS.gene017254:intron | 5.0% |
| !!! | TAAAAAAAAAAATTGTTATT+GGG | + | chr5.2:63673518-63673537 | MS.gene017254:intron | 5.0% |
| ACTTTGGTCACGTTGGCAGA+TGG | + | chr5.2:63674880-63674899 | MS.gene017254:CDS | 50.0% | |
| CTGGAACATAGAGAAGAGGG+TGG | - | chr5.2:63673863-63673882 | None:intergenic | 50.0% | |
| GAGGAATGCCCGATGATCTT+AGG | + | chr5.2:63675003-63675022 | MS.gene017254:CDS | 50.0% | |
| GTCGTCTACTTTGGTCACGT+TGG | + | chr5.2:63674873-63674892 | MS.gene017254:CDS | 50.0% | |
| TAAGACAGTCTGTGGAGGAG+TGG | + | chr5.2:63674909-63674928 | MS.gene017254:CDS | 50.0% | |
| TCCATCTCCTCCTACCTCAT+GGG | + | chr5.2:63673827-63673846 | MS.gene017254:intron | 50.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5.2:63673145-63673164 | MS.gene017254:intron | 50.0% | |
| TTCCATCTCCTCCTACCTCA+TGG | + | chr5.2:63673826-63673845 | MS.gene017254:intron | 50.0% | |
| TTTCCATCCCATGAGGTAGG+AGG | - | chr5.2:63673837-63673856 | None:intergenic | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5.2:63673687-63673706 | None:intergenic | 50.0% |
| TCCCATGAGGTAGGAGGAGA+TGG | - | chr5.2:63673831-63673850 | None:intergenic | 55.0% | |
| TCTCCTCCTACCTCATGGGA+TGG | + | chr5.2:63673831-63673850 | MS.gene017254:intron | 55.0% | |
| TGGTCACGTTGGCAGATGGA+TGG | + | chr5.2:63674884-63674903 | MS.gene017254:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 63672742 | 63675173 | 63672742 | ID=MS.gene017254 |
| chr5.2 | mRNA | 63672742 | 63675173 | 63672742 | ID=MS.gene017254.t1;Parent=MS.gene017254 |
| chr5.2 | exon | 63672742 | 63673076 | 63672742 | ID=MS.gene017254.t1.exon1;Parent=MS.gene017254.t1 |
| chr5.2 | CDS | 63672742 | 63673076 | 63672742 | ID=cds.MS.gene017254.t1;Parent=MS.gene017254.t1 |
| chr5.2 | exon | 63673608 | 63673732 | 63673608 | ID=MS.gene017254.t1.exon2;Parent=MS.gene017254.t1 |
| chr5.2 | CDS | 63673608 | 63673732 | 63673608 | ID=cds.MS.gene017254.t1;Parent=MS.gene017254.t1 |
| chr5.2 | exon | 63674815 | 63675173 | 63674815 | ID=MS.gene017254.t1.exon3;Parent=MS.gene017254.t1 |
| chr5.2 | CDS | 63674815 | 63675173 | 63674815 | ID=cds.MS.gene017254.t1;Parent=MS.gene017254.t1 |
| Gene Sequence |
| Protein sequence |
