AlfalfaGEDB | MS.gene017415

M. sativa cultivar XinJiangDaYe / MS.gene017415

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017415.t1	XP_027187712.1	61.5	296	90	8	55	328	636	929	1.40E-87	333.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017415.t1	P43298	58.4	296	99	10	55	328	577	870	1.5e-82	307.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017415.t1	A0A3Q7Y888	61.5	296	90	8	55	328	636	929	1.0e-87	333.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017415.t1	MTR_5g077430	61.356	295	91	8	55	328	581	873	1.45e-110	343
MS.gene017415.t1	MTR_8g106100	55.102	294	110	8	55	328	567	858	6.55e-96	304
MS.gene017415.t1	MTR_3g084510	51.864	295	119	7	55	328	574	866	9.30e-91	290
MS.gene017415.t1	MTR_1g033000	51.864	295	119	8	55	328	567	859	5.18e-90	288
MS.gene017415.t1	MTR_8g083240	49.677	310	131	9	40	328	545	850	3.04e-87	281
MS.gene017415.t1	MTR_1g033010	51.864	295	119	9	55	328	562	854	1.69e-86	279
MS.gene017415.t1	MTR_7g106210	50.847	295	122	8	55	328	585	877	9.75e-86	277
MS.gene017415.t1	MTR_1g033040	50.338	296	123	9	55	328	569	862	7.10e-85	275
MS.gene017415.t1	MTR_4g051605	47.024	336	148	9	17	328	567	896	1.90e-83	271
MS.gene017415.t1	MTR_2g087230	48.136	295	130	7	55	328	594	886	1.17e-75	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017415.t1	AT1G66150	58.446	296	99	10	55	328	577	870	7.41e-101	317
MS.gene017415.t1	AT2G01820	54.915	295	108	9	55	326	574	866	1.75e-93	298
MS.gene017415.t1	AT3G23750	51.361	294	120	8	56	328	568	859	3.05e-90	289
MS.gene017415.t1	AT1G24650	53.169	284	110	8	55	317	536	817	3.98e-87	280
MS.gene017415.t1	AT3G07070	37.801	291	162	5	54	326	67	356	5.30e-58	192
MS.gene017415.t1	AT1G07570	38.312	308	156	9	44	323	49	350	1.11e-56	189
MS.gene017415.t1	AT1G07570	38.312	308	156	9	44	323	49	350	1.11e-56	189
MS.gene017415.t1	AT1G07570	38.312	308	156	9	44	323	49	350	1.11e-56	189
MS.gene017415.t1	AT1G07570	38.312	308	156	9	44	323	60	361	1.47e-56	189
MS.gene017415.t1	AT1G69790	36.986	292	157	6	59	326	66	354	5.60e-56	186

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Find 84 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGCAGTGCAGATC+AGG	0.402338	5.3:+63527557	MS.gene017415:CDS
AAAGTTGATGTGTACAGCTT+CGG	0.504123	5.3:+63529363	MS.gene017415:CDS
AAGATACCTGTTGTGCATTC+TGG	0.353116	5.3:-63527938	None:intergenic
AAGGCTTGATATGTCCAATG+TGG	0.709524	5.3:+63529602	MS.gene017415:CDS
AATCTCCTATCCCACCCGAG+TGG	0.741811	5.3:-63527743	None:intergenic
ACAAGATGCATGCTATCCTC+AGG	0.549353	5.3:-63529438	None:intergenic
ACATACATGCTTTGGAACCA+TGG	0.560825	5.3:-63529462	None:intergenic
ACTGCATGGATGGGAATGAG+AGG	0.654062	5.3:+63527654	MS.gene017415:CDS
AGAAAGTAGAGTAACCACAT+TGG	0.668455	5.3:-63529616	None:intergenic
AGAGGCCGAACCACTCGGGT+GGG	0.632248	5.3:+63527733	MS.gene017415:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGATACCAAATTCTCAA+AGG	+	chr5.3:63528384-63528403	MS.gene017415:intron	30.0%
AGTTTAGAAATGTTGGATAC+CGG	+	chr5.3:63528129-63528148	MS.gene017415:intron	30.0%
ATGTCAGTCACTAATATAGA+TGG	+	chr5.3:63528694-63528713	MS.gene017415:intron	30.0%
ATTACTTATTGCATTGGATG+TGG	+	chr5.3:63527763-63527782	MS.gene017415:CDS	30.0%
TAGGAGATTACTTATTGCAT+TGG	+	chr5.3:63527757-63527776	MS.gene017415:CDS	30.0%
TATAAAGGGAACTTTGGTAA+TGG	+	chr5.3:63527518-63527537	MS.gene017415:CDS	30.0%
TATCCTGAATCATTTCAGAT+TGG	-	chr5.3:63529287-63529306	None:intergenic	30.0%
TGAAGTTAAAACTTTGTGCA+GGG	+	chr5.3:63528877-63528896	MS.gene017415:intron	30.0%
TTTAGCTGCAATAAGATAGA+CGG	-	chr5.3:63529328-63529347	None:intergenic	30.0%
ACTGTTGTGCAGAGATATAT+AGG	+	chr5.3:63528943-63528962	MS.gene017415:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	63527278	63529653	63527278	ID=MS.gene017415
chr5.3	mRNA	63527278	63529653	63527278	ID=MS.gene017415.t1;Parent=MS.gene017415
chr5.3	exon	63527278	63527953	63527278	ID=MS.gene017415.t1.exon1;Parent=MS.gene017415.t1
chr5.3	CDS	63527278	63527953	63527278	ID=cds.MS.gene017415.t1;Parent=MS.gene017415.t1
chr5.3	exon	63529343	63529653	63529343	ID=MS.gene017415.t1.exon2;Parent=MS.gene017415.t1
chr5.3	CDS	63529343	63529653	63529343	ID=cds.MS.gene017415.t1;Parent=MS.gene017415.t1

Gene Sequence

>MS.gene017415

ATGAATAAACCCTTGCTAGGTTCAGATTCAGAATCAGATGATGAAGGAAGTTCTAGTACTGGTGGAGGTGTGATGGGATTGGGAAGCTTGAAGAATGCCTTGAACAAGCTTGTTCCTTATGGTTTCGATCAACATGCAAATCTGAATGAAGCATTTCCCTGGTCAATAGCGGCTCTGATGAGAACAACCAACAACTTCACTCACGAGAACATTCTGGGACAAGGAGGTTCTGGTATTGTTTATAAAGGGAACTTTGGTAATGGTAACATGATCGCAGTTAAAAGAATGCAGTGCAGATCAGGTTTTGAATTTGAGTCTCAACTTGCTGTTCTTCAAAAAGTTGGTCATACACAGCATCTGGTTGCTCTTCTTGGTTACTGCATGGATGGGAATGAGAGGATATTCGTGTATGAATACATGTCTCAGGGGTCTCTGAGTAGACATCTGTTTGATTCAGAGGCCGAACCACTCGGGTGGGATAGGAGATTACTTATTGCATTGGATGTGGCAAGGGCTGTCGACTTCCTTCATACCTCTGGTCATATACACGGAGACTTGAAGCCTTCCAACGTTCTACTTCAAAAGGATATGAGTGCTAAGATAGCAGATTTCGGTATTGCTCAACATGGGAAATGCTCAGGAGCTTTCGGTTATTTGGCACCAGAATGCACAACAGGTATCTTTTATAATTATTTGAAAATTTCTGAAATTAGGGTTCATTGTGATTATTTATGATAACTATGTCGAATTAGGATGTTTTAATGACTTAGATATCAGCATATGTCTGTTTCTTAATGGCTAGAGATGGTATAACATACTTATATTTTTGGACTAATAATTTTCAAAACTAAAGTTTAGAAATGTTGGATACCGGTTGAAATAAAAAATTATTGCTACTCATAATTGTCATTTTTATGAGAATTGTTACTTTAAATGATACAAACAAGCGCCGATAACCATCAAAATTTGAATGTTATTACTGATGATCATTCTAATAACTATAACCAATTAATAAGTTTCACATGTCTACTTTGAGAAATTTACTAATGAATACAATATCTTCATTCTTGTGTAGAATGTAATAGAATTTACTTACTTCATTATTTACATGATACCAAATTCTCAAAGGCTTCTGGTGACATACATAGCTACGGAAAAATTAGTACTCTGCCATATATGTATTTGTTAAACCATCAACGGTATGAAGTAAAAGAAATCGCTAAACAAAATAGAGCCAAAGTAAAAAAACATAACCTATAACGCATTGAATGAAATTGTTATATCCGAAGTGAAGAATAAGTAAAGAGTAAGATAACAAATCTGCACCAAAGACTATGACTACTAAAACTGTGTTATATAAACAATCTCCTTTTAACTTGCTAAGACGACGACTCACAACTTATATAGAGCTTTCAGATGTCAGTCACTAATATAGATGGTAGAGTTTAAGAACCTCTTCATATTGCAGATTAAATGGCTACACAACATAAGAACCTCTCGGTAACTTACTTTTGTGGACAGAAAACTTCCTCGGTCGTAGAAGGTGCAGTAGAAACATTATCCGAATCCAAAGCTCTTAAAGTTTCATAATATCTAATTTGAAGTTAAAACTTTGTGCAAACATCATGTCTACTATAGCTGAAGTTAAAACTTTGTGCAGGGAAGACTGTTGTGCAGAGATATATAGGATATTTACCTGAAGCACCAAATTATCAAAACAACTATACTAAAAAAAAAAACAAATCTACTATTGTATAATATTCATCAAATTTTTGATACCACCAAAAATCACACAACAAAAAGAAATCCGATAAAAGAAAAAATAATAAAAAGAATAGAAGCATCGATAAGAAGAAGATGAATAATAGGCACAACAGATCCGACATATGACTTCTGCAGCTCTGTTTCACTTCTTACAAATTGAATTAACTCTCTATTTTAACCCAAATTGACCATTCCATGGACTGTGTTGAGTACTCAAACTGTTTTTGAATGCTTGTAAAATTCCAATCTGAAATGATTCAGGATAGAGCTTGTTTGAGCAAATCCGTCTATCTTATTGCAGCTAAAGGCGGCGTGACTACTAAAGTTGATGTGTACAGCTTCGGTGTACTATTGATGGAGCTGTTAACAGGAAGAAGGGCATTTAATAGCAGCCAGCCTGAGGATAGCATGCATCTTGTACCATGGTTCCAAAGCATGTATGTAGCCAAGGACACGTTCTTCACCGCAATTGACCACACAATTATCAATGAAGAATCGCTTGCTAGCATTCACACCGTAGCAGACTTAGCTGTTCATTGCACTGCAAGCGAGCCAGATCAAAGGCTTGATATGTCCAATGTGGTTACTCTACTTTCTTCTCTTGTAGAATAA

Protein sequence

>MS.gene017415.t1

MNKPLLGSDSESDDEGSSSTGGGVMGLGSLKNALNKLVPYGFDQHANLNEAFPWSIAALMRTTNNFTHENILGQGGSGIVYKGNFGNGNMIAVKRMQCRSGFEFESQLAVLQKVGHTQHLVALLGYCMDGNERIFVYEYMSQGSLSRHLFDSEAEPLGWDRRLLIALDVARAVDFLHTSGHIHGDLKPSNVLLQKDMSAKIADFGIAQHGKCSGAFGYLAPECTTAKGGVTTKVDVYSFGVLLMELLTGRRAFNSSQPEDSMHLVPWFQSMYVAKDTFFTAIDHTIINEESLASIHTVADLAVHCTASEPDQRLDMSNVVTLLSSLVE