Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017451.t1 | XP_003616375.2 | 78.8 | 311 | 28 | 2 | 1 | 273 | 1 | 311 | 1.10E-114 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017451.t1 | Q9FJ00 | 53.0 | 185 | 63 | 5 | 97 | 273 | 126 | 294 | 8.7e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017451.t1 | G7K1Y5 | 78.8 | 311 | 28 | 2 | 1 | 273 | 1 | 311 | 8.0e-115 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017451.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017451.t1 | MTR_5g079500 | 84.244 | 311 | 11 | 2 | 1 | 273 | 1 | 311 | 0.0 | 525 |
| MS.gene017451.t1 | MTR_5g005110 | 62.500 | 72 | 27 | 0 | 177 | 248 | 221 | 292 | 1.71e-25 | 103 |
| MS.gene017451.t1 | MTR_1g106470 | 59.155 | 71 | 29 | 0 | 178 | 248 | 194 | 264 | 1.85e-24 | 99.8 |
| MS.gene017451.t1 | MTR_1g106460 | 70.000 | 60 | 18 | 0 | 189 | 248 | 247 | 306 | 1.01e-23 | 98.6 |
| MS.gene017451.t1 | MTR_3g103030 | 58.571 | 70 | 29 | 0 | 179 | 248 | 228 | 297 | 1.10e-22 | 95.5 |
| MS.gene017451.t1 | MTR_1g018090 | 62.903 | 62 | 23 | 0 | 187 | 248 | 281 | 342 | 1.92e-22 | 95.5 |
| MS.gene017451.t1 | MTR_8g093500 | 51.220 | 82 | 38 | 2 | 161 | 242 | 97 | 176 | 2.06e-19 | 85.9 |
| MS.gene017451.t1 | MTR_3g101810 | 62.500 | 56 | 21 | 0 | 187 | 242 | 178 | 233 | 1.75e-18 | 83.2 |
| MS.gene017451.t1 | MTR_7g069590 | 66.038 | 53 | 18 | 0 | 187 | 239 | 33 | 85 | 7.39e-18 | 78.6 |
| MS.gene017451.t1 | MTR_1g106480 | 64.815 | 54 | 19 | 0 | 197 | 250 | 86 | 139 | 8.29e-18 | 78.6 |
| MS.gene017451.t1 | MTR_4g131160 | 48.148 | 81 | 38 | 1 | 167 | 243 | 179 | 259 | 7.95e-17 | 79.7 |
| MS.gene017451.t1 | MTR_4g131160 | 48.148 | 81 | 38 | 1 | 167 | 243 | 182 | 262 | 7.99e-17 | 80.1 |
| MS.gene017451.t1 | MTR_2g021380 | 91.892 | 37 | 3 | 0 | 25 | 61 | 45 | 81 | 2.59e-16 | 73.6 |
| MS.gene017451.t1 | MTR_3g073460 | 89.189 | 37 | 4 | 0 | 25 | 61 | 46 | 82 | 1.23e-15 | 71.2 |
| MS.gene017451.t1 | MTR_1g080890 | 50.769 | 65 | 32 | 0 | 179 | 243 | 192 | 256 | 1.85e-14 | 72.8 |
| MS.gene017451.t1 | MTR_5g017210 | 42.342 | 111 | 62 | 1 | 132 | 242 | 91 | 199 | 3.39e-11 | 62.4 |
| MS.gene017451.t1 | MTR_2g067000 | 43.421 | 76 | 43 | 0 | 167 | 242 | 144 | 219 | 4.35e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017451.t1 | AT5G37800 | 53.968 | 189 | 65 | 5 | 92 | 273 | 121 | 294 | 7.99e-55 | 179 |
| MS.gene017451.t1 | AT1G66470 | 62.585 | 147 | 48 | 2 | 125 | 271 | 147 | 286 | 1.51e-50 | 168 |
| MS.gene017451.t1 | AT2G14760 | 60.000 | 70 | 28 | 0 | 179 | 248 | 236 | 305 | 3.37e-24 | 99.8 |
| MS.gene017451.t1 | AT4G33880 | 60.000 | 70 | 28 | 0 | 179 | 248 | 265 | 334 | 6.02e-24 | 99.4 |
| MS.gene017451.t1 | AT1G27740 | 54.430 | 79 | 36 | 0 | 170 | 248 | 157 | 235 | 9.31e-24 | 97.1 |
| MS.gene017451.t1 | AT5G43175 | 58.442 | 77 | 30 | 1 | 174 | 248 | 124 | 200 | 1.40e-23 | 95.9 |
| MS.gene017451.t1 | AT2G14760 | 50.602 | 83 | 28 | 1 | 179 | 248 | 236 | 318 | 1.09e-20 | 90.5 |
| MS.gene017451.t1 | AT5G01305 | 57.576 | 66 | 28 | 0 | 174 | 239 | 31 | 96 | 2.47e-20 | 85.9 |
| MS.gene017451.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 179 | 264 | 34 | 115 | 1.52e-19 | 85.5 |
| MS.gene017451.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 179 | 264 | 137 | 218 | 8.65e-19 | 85.1 |
| MS.gene017451.t1 | AT4G30980 | 49.412 | 85 | 39 | 1 | 179 | 263 | 129 | 209 | 2.26e-18 | 83.6 |
| MS.gene017451.t1 | AT4G30980 | 53.247 | 77 | 32 | 1 | 187 | 263 | 185 | 257 | 3.12e-18 | 83.6 |
| MS.gene017451.t1 | AT4G00120 | 43.820 | 89 | 48 | 2 | 154 | 242 | 88 | 174 | 1.31e-17 | 79.3 |
| MS.gene017451.t1 | AT5G58010 | 50.000 | 72 | 36 | 0 | 172 | 243 | 91 | 162 | 1.11e-16 | 78.6 |
| MS.gene017451.t1 | AT3G21330 | 58.929 | 56 | 23 | 0 | 187 | 242 | 276 | 331 | 4.23e-16 | 77.8 |
| MS.gene017451.t1 | AT3G50330 | 64.179 | 67 | 22 | 1 | 187 | 253 | 126 | 190 | 8.63e-12 | 63.9 |
| MS.gene017451.t1 | AT1G09530 | 26.943 | 193 | 125 | 3 | 67 | 243 | 208 | 400 | 2.04e-11 | 64.3 |
| MS.gene017451.t1 | AT1G09530 | 26.943 | 193 | 125 | 3 | 67 | 243 | 208 | 400 | 2.04e-11 | 64.3 |
| MS.gene017451.t1 | AT1G09530 | 26.943 | 193 | 125 | 3 | 67 | 243 | 208 | 400 | 2.04e-11 | 64.3 |
| MS.gene017451.t1 | AT1G09530 | 26.943 | 193 | 125 | 3 | 67 | 243 | 208 | 400 | 2.04e-11 | 64.3 |
| MS.gene017451.t1 | AT1G09530 | 26.943 | 193 | 125 | 3 | 67 | 243 | 208 | 400 | 2.04e-11 | 64.3 |
| MS.gene017451.t1 | AT1G09530 | 26.943 | 193 | 125 | 3 | 67 | 243 | 208 | 400 | 2.04e-11 | 64.3 |
| MS.gene017451.t1 | AT5G09750 | 51.250 | 80 | 32 | 1 | 163 | 242 | 109 | 181 | 3.55e-11 | 62.0 |
Find 38 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTGTGCATGGCTTCT+TGG | 0.232597 | 5.1:-61780658 | None:intergenic |
| TGTTGGCAGCTGATGAATTT+TGG | 0.271276 | 5.1:+61781259 | MS.gene017451:CDS |
| CATGGCTTCTTGGCATTGGC+AGG | 0.349622 | 5.1:-61780648 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5.1:+61780326 | MS.gene017451:CDS |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5.1:+61780201 | MS.gene017451:CDS |
| CGTTTGGCACAAGTTCTTGT+AGG | 0.393441 | 5.1:-61780869 | None:intergenic |
| TGTGCATGGCTTCTTGGCAT+TGG | 0.393772 | 5.1:-61780652 | None:intergenic |
| TTGTTGCAAATTATTCTCAT+TGG | 0.405551 | 5.1:-61780079 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5.1:-61780666 | None:intergenic |
| AAATCTACCTTGGAACCGTT+TGG | 0.425715 | 5.1:-61780885 | None:intergenic |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5.1:-61780720 | None:intergenic |
| TCGTCATCACAAGGGACATT+TGG | 0.448252 | 5.1:-61780255 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5.1:-61780712 | None:intergenic |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5.1:+61780719 | MS.gene017451:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.473236 | 5.1:+61780165 | MS.gene017451:CDS |
| ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5.1:-61779765 | None:intergenic |
| ATGAGAATAATTTGCAACAA+TGG | 0.519375 | 5.1:+61780082 | MS.gene017451:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5.1:+61779982 | MS.gene017451:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5.1:+61781062 | MS.gene017451:intron |
| ACAAATTTGTGCATGGTGCA+AGG | 0.524955 | 5.1:+61780129 | MS.gene017451:CDS |
| TCATCGTCGTCGTCATCACA+AGG | 0.527111 | 5.1:-61780264 | None:intergenic |
| AAACTTCAAGTGGTAGCTAT+GGG | 0.532718 | 5.1:+61780166 | MS.gene017451:CDS |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5.1:-61780708 | None:intergenic |
| CTACAAGAACTTGTGCCAAA+CGG | 0.551928 | 5.1:+61780870 | MS.gene017451:CDS |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5.1:+61781107 | MS.gene017451:CDS |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5.1:+61781291 | MS.gene017451:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5.1:-61780322 | None:intergenic |
| ACTTGTGCCAAACGGTTCCA+AGG | 0.588357 | 5.1:+61780878 | MS.gene017451:CDS |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5.1:+61780216 | MS.gene017451:CDS |
| ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5.1:-61781076 | None:intergenic |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5.1:+61780156 | MS.gene017451:CDS |
| AAGTAACACAAATTTGTGCA+TGG | 0.601950 | 5.1:+61780122 | MS.gene017451:CDS |
| TGATAGCTTAATAAAAGAGT+CGG | 0.604203 | 5.1:+61780287 | MS.gene017451:CDS |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5.1:+61780695 | MS.gene017451:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5.1:+61780220 | MS.gene017451:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5.1:+61780838 | MS.gene017451:CDS |
| TATTACAACAATCTCATGCA+AGG | 0.632712 | 5.1:+61780015 | MS.gene017451:CDS |
| CATCGTCGTCGTCATCACAA+GGG | 0.710822 | 5.1:-61780263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCAAAGACTTTAACT+TGG | - | chr5.1:61780998-61781017 | None:intergenic | 20.0% |
| !! | AATCAAAACATGATATAACT+TGG | - | chr5.1:61780757-61780776 | None:intergenic | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | - | chr5.1:61780756-61780775 | None:intergenic | 20.0% |
| !!! | AAGAAAGCAAAATAACTTTT+AGG | - | chr5.1:61780921-61780940 | None:intergenic | 20.0% |
| !!! | TAGAGTCATTATTTTATATC+AGG | + | chr5.1:61780398-61780417 | MS.gene017451:intron | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | chr5.1:61781230-61781249 | MS.gene017451:intron | 20.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5.1:61780898-61780917 | None:intergenic | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+TGG | + | chr5.1:61780614-61780633 | MS.gene017451:intron | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | + | chr5.1:61780611-61780630 | MS.gene017451:intron | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5.1:61779982-61780001 | MS.gene017451:CDS | 25.0% |
| ! | TAAGATTTGTGTTTATAGGT+GGG | + | chr5.1:61780615-61780634 | MS.gene017451:intron | 25.0% |
| ! | TGATAGCTTAATAAAAGAGT+CGG | + | chr5.1:61780287-61780306 | MS.gene017451:CDS | 25.0% |
| ! | TTGTTGCAAATTATTCTCAT+TGG | - | chr5.1:61780082-61780101 | None:intergenic | 25.0% |
| ! | TTTATCAAATTAGTCCTTGA+AGG | - | chr5.1:61781163-61781182 | None:intergenic | 25.0% |
| !! | ATGAGAATAATTTGCAACAA+TGG | + | chr5.1:61780082-61780101 | MS.gene017451:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | - | chr5.1:61780120-61780139 | None:intergenic | 25.0% |
| AAGATTTGTGTTTATAGGTG+GGG | + | chr5.1:61780616-61780635 | MS.gene017451:intron | 30.0% | |
| AAGTAACACAAATTTGTGCA+TGG | + | chr5.1:61780122-61780141 | MS.gene017451:CDS | 30.0% | |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5.1:61780201-61780220 | MS.gene017451:CDS | 30.0% | |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5.1:61779768-61779787 | None:intergenic | 30.0% | |
| ATGACTCTAAACATCATACA+TGG | - | chr5.1:61780387-61780406 | None:intergenic | 30.0% | |
| CTTTAGCACAAATACTCAAT+TGG | + | chr5.1:61781135-61781154 | MS.gene017451:intron | 30.0% | |
| GAGAACTTGATGAAATAGAA+TGG | + | chr5.1:61780582-61780601 | MS.gene017451:intron | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5.1:61779914-61779933 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5.1:61780015-61780034 | MS.gene017451:CDS | 30.0% | |
| TCTATATTTGTTCATGGTGT+AGG | + | chr5.1:61781236-61781255 | MS.gene017451:intron | 30.0% | |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5.1:61779839-61779858 | MS.gene017451:intron | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5.1:61780156-61780175 | MS.gene017451:CDS | 30.0% |
| !! | ATTCTGATGATGAATTTTGC+AGG | + | chr5.1:61781041-61781060 | MS.gene017451:intron | 30.0% |
| !! | TATTTTTGACGAGACTACTA+TGG | + | chr5.1:61779787-61779806 | MS.gene017451:CDS | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5.1:61781050-61781069 | MS.gene017451:intron | 30.0% |
| AAACTTCAAGTGGTAGCTAT+GGG | + | chr5.1:61780166-61780185 | MS.gene017451:CDS | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5.1:61780695-61780714 | MS.gene017451:CDS | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5.1:61781079-61781098 | None:intergenic | 35.0% | |
| ATACTCAATTGGAACCTTCA+AGG | + | chr5.1:61781146-61781165 | MS.gene017451:intron | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5.1:61780216-61780235 | MS.gene017451:CDS | 35.0% | |
| CGGTTATGTGCAATATATCA+AGG | - | chr5.1:61780445-61780464 | None:intergenic | 35.0% | |
| TGATATATTGCACATAACCG+CGG | + | chr5.1:61780445-61780464 | MS.gene017451:intron | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5.1:61781306-61781325 | None:intergenic | 35.0% |
| AAATCTACCTTGGAACCGTT+TGG | - | chr5.1:61780888-61780907 | None:intergenic | 40.0% | |
| ACAAATTTGTGCATGGTGCA+AGG | + | chr5.1:61780129-61780148 | MS.gene017451:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5.1:61780325-61780344 | None:intergenic | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5.1:61780220-61780239 | MS.gene017451:CDS | 40.0% | |
| CTACAAGAACTTGTGCCAAA+CGG | + | chr5.1:61780870-61780889 | MS.gene017451:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5.1:61779923-61779942 | MS.gene017451:intron | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5.1:61780326-61780345 | MS.gene017451:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5.1:61780165-61780184 | MS.gene017451:CDS | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5.1:61780838-61780857 | MS.gene017451:CDS | 40.0% | |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5.1:61781107-61781126 | MS.gene017451:CDS | 40.0% | |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5.1:61779922-61779941 | MS.gene017451:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5.1:61781242-61781261 | MS.gene017451:intron | 40.0% | |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5.1:61779857-61779876 | MS.gene017451:intron | 40.0% |
| ! | TAGTTTTCAGCAGAGTTGGA+TGG | + | chr5.1:61780053-61780072 | MS.gene017451:CDS | 40.0% |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5.1:61781259-61781278 | MS.gene017451:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5.1:61781270-61781289 | MS.gene017451:CDS | 40.0% |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5.1:61781062-61781081 | MS.gene017451:intron | 40.0% |
| !! | TGCTTAGTTTTCAGCAGAGT+TGG | + | chr5.1:61780049-61780068 | MS.gene017451:CDS | 40.0% |
| CGTTTGGCACAAGTTCTTGT+AGG | - | chr5.1:61780872-61780891 | None:intergenic | 45.0% | |
| TCGTCATCACAAGGGACATT+TGG | - | chr5.1:61780258-61780277 | None:intergenic | 45.0% | |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5.1:61780669-61780688 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5.1:61780711-61780730 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5.1:61780715-61780734 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5.1:61780739-61780758 | None:intergenic | 45.0% |
| ! | TGATGTTTCTGTCCTGATCG+CGG | + | chr5.1:61780496-61780515 | MS.gene017451:intron | 45.0% |
| ! | TGCCCTTTTCTGCATAGAGT+AGG | - | chr5.1:61779928-61779947 | None:intergenic | 45.0% |
| !! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5.1:61781273-61781292 | MS.gene017451:CDS | 45.0% |
| !! | GAAAAAAATAATAAAATTAA+AGG | - | chr5.1:61780529-61780548 | None:intergenic | 5.0% |
| !!! | GATAAATTATTAATATTTTA+GGG | + | chr5.1:61781177-61781196 | MS.gene017451:intron | 5.0% |
| !!! | TGATAAATTATTAATATTTT+AGG | + | chr5.1:61781176-61781195 | MS.gene017451:intron | 5.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5.1:61780723-61780742 | None:intergenic | 50.0% | |
| ACTTGTGCCAAACGGTTCCA+AGG | + | chr5.1:61780878-61780897 | MS.gene017451:CDS | 50.0% | |
| CATCGTCGTCGTCATCACAA+GGG | - | chr5.1:61780266-61780285 | None:intergenic | 50.0% | |
| GCACATAACCGCGGTCAAAT+GGG | + | chr5.1:61780454-61780473 | MS.gene017451:intron | 50.0% | |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5.1:61781291-61781310 | MS.gene017451:CDS | 50.0% | |
| GTATTCGTCCCATTTGACCG+CGG | - | chr5.1:61780465-61780484 | None:intergenic | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | - | chr5.1:61780267-61780286 | None:intergenic | 50.0% | |
| TGCACATAACCGCGGTCAAA+TGG | + | chr5.1:61780453-61780472 | MS.gene017451:intron | 50.0% | |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5.1:61780655-61780674 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5.1:61781285-61781304 | None:intergenic | 50.0% |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5.1:61780719-61780738 | MS.gene017451:CDS | 50.0% |
| AAAGGTCTGCAACCGCGATC+AGG | - | chr5.1:61780511-61780530 | None:intergenic | 55.0% | |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5.1:61780661-61780680 | None:intergenic | 55.0% | |
| !! | CATGGCTTCTTGGCATTGGC+AGG | - | chr5.1:61780651-61780670 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 61779755 | 61781359 | 61779755 | ID=MS.gene017451 |
| chr5.1 | mRNA | 61779755 | 61781359 | 61779755 | ID=MS.gene017451.t1;Parent=MS.gene017451 |
| chr5.1 | exon | 61779755 | 61779825 | 61779755 | ID=MS.gene017451.t1.exon1;Parent=MS.gene017451.t1 |
| chr5.1 | CDS | 61779755 | 61779825 | 61779755 | ID=cds.MS.gene017451.t1;Parent=MS.gene017451.t1 |
| chr5.1 | exon | 61779939 | 61780347 | 61779939 | ID=MS.gene017451.t1.exon2;Parent=MS.gene017451.t1 |
| chr5.1 | CDS | 61779939 | 61780347 | 61779939 | ID=cds.MS.gene017451.t1;Parent=MS.gene017451.t1 |
| chr5.1 | exon | 61780633 | 61780740 | 61780633 | ID=MS.gene017451.t1.exon3;Parent=MS.gene017451.t1 |
| chr5.1 | CDS | 61780633 | 61780740 | 61780633 | ID=cds.MS.gene017451.t1;Parent=MS.gene017451.t1 |
| chr5.1 | exon | 61780834 | 61780899 | 61780834 | ID=MS.gene017451.t1.exon4;Parent=MS.gene017451.t1 |
| chr5.1 | CDS | 61780834 | 61780899 | 61780834 | ID=cds.MS.gene017451.t1;Parent=MS.gene017451.t1 |
| chr5.1 | exon | 61781063 | 61781128 | 61781063 | ID=MS.gene017451.t1.exon5;Parent=MS.gene017451.t1 |
| chr5.1 | CDS | 61781063 | 61781128 | 61781063 | ID=cds.MS.gene017451.t1;Parent=MS.gene017451.t1 |
| chr5.1 | exon | 61781258 | 61781359 | 61781258 | ID=MS.gene017451.t1.exon6;Parent=MS.gene017451.t1 |
| chr5.1 | CDS | 61781258 | 61781359 | 61781258 | ID=cds.MS.gene017451.t1;Parent=MS.gene017451.t1 |
| Gene Sequence |
| Protein sequence |
