Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017473.t1 | XP_003618052.1 | 77.9 | 195 | 43 | 0 | 93 | 287 | 76 | 270 | 8.40E-73 | 283.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017473.t1 | G7K0M6 | 77.9 | 195 | 43 | 0 | 93 | 287 | 76 | 270 | 6.1e-73 | 283.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017473.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017473.t1 | MTR_5g098470 | 90.769 | 195 | 18 | 0 | 93 | 287 | 76 | 270 | 2.73e-125 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTATTATCCTTATT+AGG | 0.131951 | 5.2:+82995412 | None:intergenic |
| ATACACTTGGGAGTTCTTTA+TGG | 0.169566 | 5.2:+82995672 | None:intergenic |
| ATACCCCTCCATTCCCTTTC+AGG | 0.172402 | 5.2:+82995439 | None:intergenic |
| GTGACCATGTAAAGCCTTAT+TGG | 0.177322 | 5.2:+82995474 | None:intergenic |
| ATCAAAAGATAATGTCTTAT+TGG | 0.200998 | 5.2:-82995047 | MS.gene017473:CDS |
| GTCATCAATAACCAATTCTT+TGG | 0.229332 | 5.2:+82995342 | None:intergenic |
| CATGAGGATTGTTCTGATTT+GGG | 0.232824 | 5.2:-82997593 | MS.gene017473:CDS |
| CAATATTATTATCCTTATTA+GGG | 0.247792 | 5.2:+82995413 | None:intergenic |
| AATAACCAATTCTTTGGAAT+TGG | 0.272420 | 5.2:+82995348 | None:intergenic |
| TCATGAGGATTGTTCTGATT+TGG | 0.287538 | 5.2:-82997594 | MS.gene017473:CDS |
| CGACAACTTCATAGAGGATT+TGG | 0.290539 | 5.2:-82995203 | MS.gene017473:CDS |
| GAGAGTCCTCTAACCCTTAT+CGG | 0.310995 | 5.2:-82997357 | MS.gene017473:CDS |
| TGCATCCAATTCCAAAGAAT+TGG | 0.334606 | 5.2:-82995353 | MS.gene017473:CDS |
| CTTTCCCTAGAGCTTGACTA+TGG | 0.341322 | 5.2:+82995578 | None:intergenic |
| TTGATGACGAATCAAAATCT+TGG | 0.371768 | 5.2:-82995327 | MS.gene017473:CDS |
| GAGGGGTATGAACCCTAATA+AGG | 0.375613 | 5.2:-82995425 | MS.gene017473:CDS |
| TACCCCTCCATTCCCTTTCA+GGG | 0.375926 | 5.2:+82995440 | None:intergenic |
| AAAGAACTTCCAATCCAATA+AGG | 0.383910 | 5.2:-82995488 | MS.gene017473:CDS |
| GAAAGGAGGTGAGAGGATGT+TGG | 0.386862 | 5.2:-82995648 | MS.gene017473:CDS |
| AGAGGATGTTGGGAAATAAC+AGG | 0.396499 | 5.2:-82995637 | MS.gene017473:CDS |
| GTTGTCGTGTAAATGTTTAT+TGG | 0.414263 | 5.2:+82995219 | None:intergenic |
| GGGCTGAAGGGAAAAGGATT+AGG | 0.437563 | 5.2:-82995616 | MS.gene017473:CDS |
| CATGTAAAGCCTTATTGGAT+TGG | 0.438633 | 5.2:+82995479 | None:intergenic |
| TCACCTCCTTTCTATACACT+TGG | 0.440030 | 5.2:+82995659 | None:intergenic |
| AAAGGAGGTGAGAGGATGTT+GGG | 0.444305 | 5.2:-82995647 | MS.gene017473:CDS |
| TGATGACGAATCAAAATCTT+GGG | 0.447088 | 5.2:-82995326 | MS.gene017473:CDS |
| TTTGGATGATGAGGATAAGA+AGG | 0.451348 | 5.2:-82995185 | MS.gene017473:CDS |
| AGTAACACAGGGTTGTCTCC+AGG | 0.452625 | 5.2:+82997396 | None:intergenic |
| CAATCCAATAAGGCTTTACA+TGG | 0.457233 | 5.2:-82995478 | MS.gene017473:CDS |
| GCTAATTGCAATTCTAATGA+TGG | 0.457837 | 5.2:-82995535 | MS.gene017473:CDS |
| GCACGAAGATTGTTTAAAAC+CGG | 0.468350 | 5.2:-82995304 | MS.gene017473:CDS |
| CCTAGTACTAGTGGTCTTGT+TGG | 0.468849 | 5.2:-82995151 | MS.gene017473:CDS |
| GATAAGCCGATAAGGGTTAG+AGG | 0.469929 | 5.2:+82997351 | None:intergenic |
| AGAATCCATAGTCAAGCTCT+AGG | 0.477759 | 5.2:-82995583 | MS.gene017473:CDS |
| TTGTTCTGATTTGGGGTCAA+AGG | 0.495727 | 5.2:-82997585 | MS.gene017473:CDS |
| AGATCAGAGATCTTGAACCC+TGG | 0.502499 | 5.2:-82997414 | MS.gene017473:CDS |
| CATGAGATCTCACCCTGAAA+GGG | 0.502988 | 5.2:-82995452 | MS.gene017473:CDS |
| CCAACAAGACCACTAGTACT+AGG | 0.509402 | 5.2:+82995151 | None:intergenic |
| TATGCACGGATAAGCCGATA+AGG | 0.510075 | 5.2:+82997343 | None:intergenic |
| TTGTTTAAAACCGGTAAAAG+AGG | 0.519380 | 5.2:-82995295 | MS.gene017473:CDS |
| ACATGAGATCTCACCCTGAA+AGG | 0.521597 | 5.2:-82995453 | MS.gene017473:CDS |
| TAGTCAAGCTCTAGGGAAAG+AGG | 0.530133 | 5.2:-82995575 | MS.gene017473:CDS |
| AGAATGACAATAACAAAAGA+AGG | 0.532053 | 5.2:-82995105 | MS.gene017473:CDS |
| ATAACAGGGCTGAAGGGAAA+AGG | 0.534684 | 5.2:-82995622 | MS.gene017473:CDS |
| CATAGAGGATTTGGATGATG+AGG | 0.539895 | 5.2:-82995194 | MS.gene017473:CDS |
| TGTTGGTGCAGGCACAATCA+TGG | 0.540669 | 5.2:-82997622 | MS.gene017473:CDS |
| CACCTCCTTTCTATACACTT+GGG | 0.549677 | 5.2:+82995660 | None:intergenic |
| GGAGCTAGACATGTTGGTGC+AGG | 0.550544 | 5.2:-82997633 | MS.gene017473:CDS |
| GTAACACAGGGTTGTCTCCA+GGG | 0.554460 | 5.2:+82997397 | None:intergenic |
| TTTACACGACAACTTCATAG+AGG | 0.554795 | 5.2:-82995209 | MS.gene017473:CDS |
| ATGCACGGATAAGCCGATAA+GGG | 0.556111 | 5.2:+82997344 | None:intergenic |
| GAACTCCCAAGTGTATAGAA+AGG | 0.560655 | 5.2:-82995665 | MS.gene017473:CDS |
| GATCTCACCCTGAAAGGGAA+TGG | 0.563550 | 5.2:-82995447 | MS.gene017473:CDS |
| TTGGGAAATAACAGGGCTGA+AGG | 0.564165 | 5.2:-82995629 | MS.gene017473:CDS |
| GAATCCATAGTCAAGCTCTA+GGG | 0.567403 | 5.2:-82995582 | MS.gene017473:CDS |
| ATGAGGATTGTTCTGATTTG+GGG | 0.569284 | 5.2:-82997592 | MS.gene017473:CDS |
| GTGGTCTCATCTCGCAAATG+AGG | 0.571306 | 5.2:-82997549 | MS.gene017473:CDS |
| TCACCCTGAAAGGGAATGGA+GGG | 0.580204 | 5.2:-82995443 | MS.gene017473:CDS |
| GTGTATAGAAAGGAGGTGAG+AGG | 0.582677 | 5.2:-82995655 | MS.gene017473:CDS |
| CTCACCCTGAAAGGGAATGG+AGG | 0.583418 | 5.2:-82995444 | MS.gene017473:CDS |
| TAACAAAAGAAGGAAGAAGC+TGG | 0.586820 | 5.2:-82995095 | MS.gene017473:CDS |
| GGTAAAAGAGGTCGTTCGAG+TGG | 0.603484 | 5.2:-82995283 | MS.gene017473:CDS |
| ACAATCATGGTTCTGTCATG+AGG | 0.607465 | 5.2:-82997609 | MS.gene017473:CDS |
| AGTCAAGCTCTAGGGAAAGA+GGG | 0.609576 | 5.2:-82995574 | MS.gene017473:CDS |
| AATGTTGTACCTAGTACTAG+TGG | 0.625803 | 5.2:-82995160 | MS.gene017473:CDS |
| TGGGAAATAACAGGGCTGAA+GGG | 0.627988 | 5.2:-82995628 | MS.gene017473:CDS |
| TTAGAGGACTCTCAAACCCA+AGG | 0.631194 | 5.2:+82997367 | None:intergenic |
| TAGAGGACTCTCAAACCCAA+GGG | 0.637711 | 5.2:+82997368 | None:intergenic |
| CTCCCAAGTGTATAGAAAGG+AGG | 0.641339 | 5.2:-82995662 | MS.gene017473:CDS |
| GTCCTCCTATAACATATGCA+CGG | 0.652058 | 5.2:+82997329 | None:intergenic |
| CACCCTGAAAGGGAATGGAG+GGG | 0.655548 | 5.2:-82995442 | MS.gene017473:CDS |
| AGAGGGTGAGTCGAAAGCAA+AGG | 0.661254 | 5.2:-82995557 | MS.gene017473:CDS |
| ATAGATGGAGCTAGACATGT+TGG | 0.662953 | 5.2:-82997639 | None:intergenic |
| CTGAAGGGAAAAGGATTAGG+TGG | 0.663090 | 5.2:-82995613 | MS.gene017473:CDS |
| CAAAGGAGAAGACGAAGCAG+TGG | 0.670268 | 5.2:-82997568 | MS.gene017473:CDS |
| GAGGATGTTGGGAAATAACA+GGG | 0.688904 | 5.2:-82995636 | MS.gene017473:CDS |
| AGAGGACTCTCAAACCCAAG+GGG | 0.712293 | 5.2:+82997369 | None:intergenic |
| GAGGACTCTCAAACCCAAGG+GGG | 0.722308 | 5.2:+82997370 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTATTAATATTTTT+TGG | + | chr5.2:82996142-82996161 | None:intergenic | 0.0% |
| !!! | TTATTTTTTTATATATAAAA+TGG | + | chr5.2:82996541-82996560 | None:intergenic | 0.0% |
| !!! | TTTATTTTTTTATTATTTTT+AGG | - | chr5.2:82995725-82995744 | MS.gene017473:intron | 0.0% |
| !! | AAAAAAAAACTGTATATTTA+GGG | - | chr5.2:82995975-82995994 | MS.gene017473:intron | 10.0% |
| !! | AATAAAAAAAGGAATTATAT+TGG | + | chr5.2:82996165-82996184 | None:intergenic | 10.0% |
| !! | AAATCAAAAATCTTAAGTTT+AGG | + | chr5.2:82996236-82996255 | None:intergenic | 15.0% |
| !! | ATTCTAGTAAAATAAAATCT+CGG | - | chr5.2:82996816-82996835 | MS.gene017473:intron | 15.0% |
| !! | CAAAAAAAAACTGTATATTT+AGG | - | chr5.2:82995974-82995993 | MS.gene017473:intron | 15.0% |
| !! | CAATATTATTATCCTTATTA+GGG | + | chr5.2:82997267-82997286 | None:intergenic | 15.0% |
| !! | GTACAAAGATAAAAAATAAA+AGG | + | chr5.2:82995785-82995804 | None:intergenic | 15.0% |
| !! | TATTTCAAACAAATAAAAAG+TGG | - | chr5.2:82996063-82996082 | MS.gene017473:intron | 15.0% |
| !! | TCAATATTATTATCCTTATT+AGG | + | chr5.2:82997268-82997287 | None:intergenic | 15.0% |
| !!! | ACTTTTTATTTGTTTGAAAT+AGG | + | chr5.2:82996064-82996083 | None:intergenic | 15.0% |
| !!! | ATTGATCAACATTTTATAAA+GGG | - | chr5.2:82995569-82995588 | MS.gene017473:CDS | 15.0% |
| !!! | GATTTTATTTTACTAGAATA+AGG | + | chr5.2:82996815-82996834 | None:intergenic | 15.0% |
| !!! | TATGTAAATTTTCTTTCTTT+CGG | + | chr5.2:82995952-82995971 | None:intergenic | 15.0% |
| !!! | TTTTGCTTTTAATTTTTTTG+AGG | + | chr5.2:82995892-82995911 | None:intergenic | 15.0% |
| !! | ATAAAGTTGAGAAGTTAAAT+TGG | + | chr5.2:82996196-82996215 | None:intergenic | 20.0% |
| !! | ATCAAAAGATAATGTCTTAT+TGG | - | chr5.2:82997630-82997649 | MS.gene017473:CDS | 20.0% |
| !! | ATGTGATATATATATTTGCA+AGG | - | chr5.2:82995917-82995936 | MS.gene017473:intron | 20.0% |
| !! | GTAATATCATATTTCGAATT+GGG | + | chr5.2:82995536-82995555 | None:intergenic | 20.0% |
| !! | TGGATTTGATCAATAAAAAA+AGG | + | chr5.2:82996176-82996195 | None:intergenic | 20.0% |
| !! | TGTAATATCATATTTCGAAT+TGG | + | chr5.2:82995537-82995556 | None:intergenic | 20.0% |
| !!! | ACACAAATGTTTTTTTTCTA+GGG | + | chr5.2:82996505-82996524 | None:intergenic | 20.0% |
| !!! | ATTTAGTGAGATTTTTTGTT+GGG | - | chr5.2:82995213-82995232 | MS.gene017473:CDS | 20.0% |
| !!! | GATTGATCAACATTTTATAA+AGG | - | chr5.2:82995568-82995587 | MS.gene017473:CDS | 20.0% |
| !!! | TCTTTTATTTTTCTTGAAGA+GGG | + | chr5.2:82996352-82996371 | None:intergenic | 20.0% |
| !!! | TGCTGATGTTATTTATTTTT+CGG | + | chr5.2:82995833-82995852 | None:intergenic | 20.0% |
| !!! | TTCTTTTATTTTTCTTGAAG+AGG | + | chr5.2:82996353-82996372 | None:intergenic | 20.0% |
| !!! | TTTATTTTACTAGAATAAGG+AGG | + | chr5.2:82996812-82996831 | None:intergenic | 20.0% |
| !!! | TTTTAATTTTTTTGAGGTGT+TGG | + | chr5.2:82995886-82995905 | None:intergenic | 20.0% |
| ! | AGAATGACAATAACAAAAGA+AGG | - | chr5.2:82997572-82997591 | MS.gene017473:CDS | 25.0% |
| ! | GATGTAAGGTAAGTAAAATT+TGG | + | chr5.2:82996393-82996412 | None:intergenic | 25.0% |
| ! | TAAGGTAAGTAAAATTTGGT+CGG | + | chr5.2:82996389-82996408 | None:intergenic | 25.0% |
| ! | TAGTAATTGAGAAAGATACT+AGG | - | chr5.2:82996599-82996618 | MS.gene017473:intron | 25.0% |
| ! | TATATATTTGCAAGGAGTTA+AGG | - | chr5.2:82995925-82995944 | MS.gene017473:intron | 25.0% |
| ! | TCAAGTTACTATCATTTATG+CGG | + | chr5.2:82995480-82995499 | None:intergenic | 25.0% |
| ! | TGATATTGAGTTATGACAAT+TGG | - | chr5.2:82995185-82995204 | MS.gene017473:CDS | 25.0% |
| ! | TTTAAAAAACACCAGAATCA+TGG | - | chr5.2:82996634-82996653 | MS.gene017473:intron | 25.0% |
| !! | ATATTCAGATAAGTTAGTCT+TGG | - | chr5.2:82995381-82995400 | MS.gene017473:CDS | 25.0% |
| !! | TTATCTTTTGATGTTGAACA+TGG | + | chr5.2:82997622-82997641 | None:intergenic | 25.0% |
| !!! | AAAGTTGGTAAACTTTAAGT+TGG | - | chr5.2:82996905-82996924 | MS.gene017473:intron | 25.0% |
| !!! | AATAACCAATTCTTTGGAAT+TGG | + | chr5.2:82997332-82997351 | None:intergenic | 25.0% |
| !!! | CACACAAATGTTTTTTTTCT+AGG | + | chr5.2:82996506-82996525 | None:intergenic | 25.0% |
| !!! | CATTTAGTGAGATTTTTTGT+TGG | - | chr5.2:82995212-82995231 | MS.gene017473:CDS | 25.0% |
| !!! | CTCATGAAGAGTAATTTTTT+GGG | + | chr5.2:82996741-82996760 | None:intergenic | 25.0% |
| AAAAACATTTGTGTGACATG+TGG | - | chr5.2:82996511-82996530 | MS.gene017473:intron | 30.0% | |
| AAAGAACTTCCAATCCAATA+AGG | - | chr5.2:82997189-82997208 | MS.gene017473:intron | 30.0% | |
| ATGATTTCGTTAGCTAATTG+CGG | - | chr5.2:82995626-82995645 | MS.gene017473:CDS | 30.0% | |
| CATTTCTCTTATGAAACGAA+GGG | - | chr5.2:82996441-82996460 | MS.gene017473:intron | 30.0% | |
| CCCTAAATCCTTTGAATTAA+GGG | + | chr5.2:82995440-82995459 | None:intergenic | 30.0% | |
| CCCTTAATTCAAAGGATTTA+GGG | - | chr5.2:82995437-82995456 | MS.gene017473:CDS | 30.0% | |
| CTTGAAAGATCATTTAACCA+GGG | + | chr5.2:82995245-82995264 | None:intergenic | 30.0% | |
| GCTAATTGCAATTCTAATGA+TGG | - | chr5.2:82997142-82997161 | MS.gene017473:intron | 30.0% | |
| GTCATCAATAACCAATTCTT+TGG | + | chr5.2:82997338-82997357 | None:intergenic | 30.0% | |
| GTTGTCGTGTAAATGTTTAT+TGG | + | chr5.2:82997461-82997480 | None:intergenic | 30.0% | |
| TAAATCCTTTGAATTAAGGG+AGG | + | chr5.2:82995437-82995456 | None:intergenic | 30.0% | |
| TAACCAAAATCTTAGCAAGA+TGG | - | chr5.2:82995655-82995674 | MS.gene017473:CDS | 30.0% | |
| TCAAGTTTCTTGAGTAAAGT+TGG | - | chr5.2:82996890-82996909 | MS.gene017473:intron | 30.0% | |
| TCATATTTCGAATTGGGTTA+AGG | + | chr5.2:82995530-82995549 | None:intergenic | 30.0% | |
| TCATTTCTCTTATGAAACGA+AGG | - | chr5.2:82996440-82996459 | MS.gene017473:intron | 30.0% | |
| TCCCTTAATTCAAAGGATTT+AGG | - | chr5.2:82995436-82995455 | MS.gene017473:CDS | 30.0% | |
| TCTTGAAAGATCATTTAACC+AGG | + | chr5.2:82995246-82995265 | None:intergenic | 30.0% | |
| TTTATCCTCCCTTAATTCAA+AGG | - | chr5.2:82995429-82995448 | MS.gene017473:CDS | 30.0% | |
| ! | TGATGACGAATCAAAATCTT+GGG | - | chr5.2:82997351-82997370 | MS.gene017473:CDS | 30.0% |
| ! | TTGTTTAAAACCGGTAAAAG+AGG | - | chr5.2:82997382-82997401 | MS.gene017473:CDS | 30.0% |
| !! | AACTTTAAGTTGGTGAACTT+GGG | - | chr5.2:82996915-82996934 | MS.gene017473:intron | 30.0% |
| !! | GTTATTTATTTTTCGGCCAA+AGG | + | chr5.2:82995826-82995845 | None:intergenic | 30.0% |
| !! | TTGATGACGAATCAAAATCT+TGG | - | chr5.2:82997350-82997369 | MS.gene017473:CDS | 30.0% |
| !! | TTTATTTTTCTTGAAGAGGG+AGG | + | chr5.2:82996349-82996368 | None:intergenic | 30.0% |
| !!! | AAGGTTGGTTTTAAAAGTGA+CGG | + | chr5.2:82995807-82995826 | None:intergenic | 30.0% |
| !!! | ATCTTGCTAAGATTTTGGTT+AGG | + | chr5.2:82995656-82995675 | None:intergenic | 30.0% |
| !!! | GCTCATGAAGAGTAATTTTT+TGG | + | chr5.2:82996742-82996761 | None:intergenic | 30.0% |
| !!! | TCACTTTTAAAACCAACCTT+TGG | - | chr5.2:82995807-82995826 | MS.gene017473:intron | 30.0% |
| AAATCTTAGCAAGATGGAGT+TGG | - | chr5.2:82995661-82995680 | MS.gene017473:CDS | 35.0% | |
| AATGTTGTACCTAGTACTAG+TGG | - | chr5.2:82997517-82997536 | MS.gene017473:intron | 35.0% | |
| ATACACTTGGGAGTTCTTTA+TGG | + | chr5.2:82997008-82997027 | None:intergenic | 35.0% | |
| CAATCCAATAAGGCTTTACA+TGG | - | chr5.2:82997199-82997218 | MS.gene017473:intron | 35.0% | |
| CATGAGGATTGTTCTGATTT+GGG | - | chr5.2:82995084-82995103 | MS.gene017473:CDS | 35.0% | |
| CTTATCCGTGCATATGTTAT+AGG | - | chr5.2:82995343-82995362 | MS.gene017473:CDS | 35.0% | |
| GCCCTAAATCCTTTGAATTA+AGG | + | chr5.2:82995441-82995460 | None:intergenic | 35.0% | |
| TAACAAAAGAAGGAAGAAGC+TGG | - | chr5.2:82997582-82997601 | MS.gene017473:CDS | 35.0% | |
| TAAGCTCATTCGTTCATACT+CGG | + | chr5.2:82995408-82995427 | None:intergenic | 35.0% | |
| TCATGAGGATTGTTCTGATT+TGG | - | chr5.2:82995083-82995102 | MS.gene017473:CDS | 35.0% | |
| TGAGAAAGATACTAGGATCA+AGG | - | chr5.2:82996606-82996625 | MS.gene017473:intron | 35.0% | |
| TGCATCCAATTCCAAAGAAT+TGG | - | chr5.2:82997324-82997343 | MS.gene017473:intron | 35.0% | |
| TTTACACGACAACTTCATAG+AGG | - | chr5.2:82997468-82997487 | MS.gene017473:intron | 35.0% | |
| TTTGGATGATGAGGATAAGA+AGG | - | chr5.2:82997492-82997511 | MS.gene017473:intron | 35.0% | |
| ! | ACTCCATCTTGCTAAGATTT+TGG | + | chr5.2:82995661-82995680 | None:intergenic | 35.0% |
| ! | ATGAGGATTGTTCTGATTTG+GGG | - | chr5.2:82995085-82995104 | MS.gene017473:CDS | 35.0% |
| ! | GCACGAAGATTGTTTAAAAC+CGG | - | chr5.2:82997373-82997392 | MS.gene017473:CDS | 35.0% |
| ! | TCAACGATTTTCCATGATTC+TGG | + | chr5.2:82996648-82996667 | None:intergenic | 35.0% |
| !! | AAACTTGGAGTTGGTAAACT+TGG | - | chr5.2:82996944-82996963 | MS.gene017473:intron | 35.0% |
| !! | CATGTAAAGCCTTATTGGAT+TGG | + | chr5.2:82997201-82997220 | None:intergenic | 35.0% |
| !! | GAACTTGAAGTTGGTAAACT+TGG | - | chr5.2:82996929-82996948 | MS.gene017473:intron | 35.0% |
| !! | GAACTTTAAGTTGGTGAACT+TGG | - | chr5.2:82996974-82996993 | MS.gene017473:intron | 35.0% |
| !! | TAAGTTGGTGAACTTGAAGT+TGG | - | chr5.2:82996920-82996939 | MS.gene017473:intron | 35.0% |
| !! | TTTATTTTTCGGCCAAAGGT+TGG | + | chr5.2:82995822-82995841 | None:intergenic | 35.0% |
| AACCAATACTCCGTAGTGTT+TGG | + | chr5.2:82996421-82996440 | None:intergenic | 40.0% | |
| ACATCGCATACCAAACACTA+CGG | - | chr5.2:82996408-82996427 | MS.gene017473:intron | 40.0% | |
| AGAATCCATAGTCAAGCTCT+AGG | - | chr5.2:82997094-82997113 | MS.gene017473:intron | 40.0% | |
| AGAGGATGTTGGGAAATAAC+AGG | - | chr5.2:82997040-82997059 | MS.gene017473:intron | 40.0% | |
| AGTGTTTGGTATGCGATGTA+AGG | + | chr5.2:82996407-82996426 | None:intergenic | 40.0% | |
| ATCCGTGCATATGTTATAGG+AGG | - | chr5.2:82995346-82995365 | MS.gene017473:CDS | 40.0% | |
| ATGAGGCTAAGTTATGACGA+CGG | - | chr5.2:82995145-82995164 | MS.gene017473:CDS | 40.0% | |
| CACCTCCTTTCTATACACTT+GGG | + | chr5.2:82997020-82997039 | None:intergenic | 40.0% | |
| CATAGAGGATTTGGATGATG+AGG | - | chr5.2:82997483-82997502 | MS.gene017473:intron | 40.0% | |
| CGACAACTTCATAGAGGATT+TGG | - | chr5.2:82997474-82997493 | MS.gene017473:intron | 40.0% | |
| GAACTCCCAAGTGTATAGAA+AGG | - | chr5.2:82997012-82997031 | MS.gene017473:intron | 40.0% | |
| GAATCCATAGTCAAGCTCTA+GGG | - | chr5.2:82997095-82997114 | MS.gene017473:intron | 40.0% | |
| GAGGATGTTGGGAAATAACA+GGG | - | chr5.2:82997041-82997060 | MS.gene017473:intron | 40.0% | |
| GTCCTCCTATAACATATGCA+CGG | + | chr5.2:82995351-82995370 | None:intergenic | 40.0% | |
| GTTCATTTCCTCAACGAACT+GGG | + | chr5.2:82995508-82995527 | None:intergenic | 40.0% | |
| TACCAAACACTACGGAGTAT+TGG | - | chr5.2:82996416-82996435 | MS.gene017473:intron | 40.0% | |
| TCACCTCCTTTCTATACACT+TGG | + | chr5.2:82997021-82997040 | None:intergenic | 40.0% | |
| TTGACAATCAAACCCAACAG+AGG | + | chr5.2:82996874-82996893 | None:intergenic | 40.0% | |
| ! | ACAATCATGGTTCTGTCATG+AGG | - | chr5.2:82995068-82995087 | MS.gene017473:CDS | 40.0% |
| ! | GTGACCATGTAAAGCCTTAT+TGG | + | chr5.2:82997206-82997225 | None:intergenic | 40.0% |
| ! | TTTTTGTTGGGTTCTATCCC+TGG | - | chr5.2:82995225-82995244 | MS.gene017473:CDS | 40.0% |
| !! | GAAGTTGGTAAACTTGGAGT+TGG | - | chr5.2:82996935-82996954 | MS.gene017473:intron | 40.0% |
| !! | GGAGTTGGTGAACTTTAAGT+TGG | - | chr5.2:82996965-82996984 | MS.gene017473:intron | 40.0% |
| !! | TTGTTCTGATTTGGGGTCAA+AGG | - | chr5.2:82995092-82995111 | MS.gene017473:CDS | 40.0% |
| AAAGGAGGTGAGAGGATGTT+GGG | - | chr5.2:82997030-82997049 | MS.gene017473:intron | 45.0% | |
| AAGATGGAGTTGGCATGATG+GGG | - | chr5.2:82995671-82995690 | MS.gene017473:CDS | 45.0% | |
| AATCAAACCCAACAGAGGAG+AGG | + | chr5.2:82996869-82996888 | None:intergenic | 45.0% | |
| ACATGAGATCTCACCCTGAA+AGG | - | chr5.2:82997224-82997243 | MS.gene017473:intron | 45.0% | |
| AGAAAACCCTCTCCTCTGTT+GGG | - | chr5.2:82996859-82996878 | MS.gene017473:intron | 45.0% | |
| AGATCAGAGATCTTGAACCC+TGG | - | chr5.2:82995263-82995282 | MS.gene017473:CDS | 45.0% | |
| ATAACAGGGCTGAAGGGAAA+AGG | - | chr5.2:82997055-82997074 | MS.gene017473:intron | 45.0% | |
| ATCAAACCCAACAGAGGAGA+GGG | + | chr5.2:82996868-82996887 | None:intergenic | 45.0% | |
| ATGCACGGATAAGCCGATAA+GGG | + | chr5.2:82995336-82995355 | None:intergenic | 45.0% | |
| CAAGATGGAGTTGGCATGAT+GGG | - | chr5.2:82995670-82995689 | MS.gene017473:CDS | 45.0% | |
| CATGAGATCTCACCCTGAAA+GGG | - | chr5.2:82997225-82997244 | MS.gene017473:intron | 45.0% | |
| CATTTATGCGGACCATGACA+TGG | + | chr5.2:82995468-82995487 | None:intergenic | 45.0% | |
| CCAACAAGACCACTAGTACT+AGG | + | chr5.2:82997529-82997548 | None:intergenic | 45.0% | |
| CTCCCAAGTGTATAGAAAGG+AGG | - | chr5.2:82997015-82997034 | MS.gene017473:intron | 45.0% | |
| CTGAAGGGAAAAGGATTAGG+TGG | - | chr5.2:82997064-82997083 | MS.gene017473:intron | 45.0% | |
| CTTTCCCTAGAGCTTGACTA+TGG | + | chr5.2:82997102-82997121 | None:intergenic | 45.0% | |
| GAGAGTCCTCTAACCCTTAT+CGG | - | chr5.2:82995320-82995339 | MS.gene017473:CDS | 45.0% | |
| GATAAGCCGATAAGGGTTAG+AGG | + | chr5.2:82995329-82995348 | None:intergenic | 45.0% | |
| GGTTCATTTCCTCAACGAAC+TGG | + | chr5.2:82995509-82995528 | None:intergenic | 45.0% | |
| GTGTATAGAAAGGAGGTGAG+AGG | - | chr5.2:82997022-82997041 | MS.gene017473:intron | 45.0% | |
| TAGAAAACCCTCTCCTCTGT+TGG | - | chr5.2:82996858-82996877 | MS.gene017473:intron | 45.0% | |
| TAGAGGACTCTCAAACCCAA+GGG | + | chr5.2:82995312-82995331 | None:intergenic | 45.0% | |
| TATGCACGGATAAGCCGATA+AGG | + | chr5.2:82995337-82995356 | None:intergenic | 45.0% | |
| TCTAGGGAATGTCGCACAAA+TGG | + | chr5.2:82996489-82996508 | None:intergenic | 45.0% | |
| TGGGAAATAACAGGGCTGAA+GGG | - | chr5.2:82997049-82997068 | MS.gene017473:intron | 45.0% | |
| TTAGAGGACTCTCAAACCCA+AGG | + | chr5.2:82995313-82995332 | None:intergenic | 45.0% | |
| TTGGGAAATAACAGGGCTGA+AGG | - | chr5.2:82997048-82997067 | MS.gene017473:intron | 45.0% | |
| ! | ACTCGAACGACCTCTTTTAC+CGG | + | chr5.2:82997395-82997414 | None:intergenic | 45.0% |
| ! | GAGGGGTATGAACCCTAATA+AGG | - | chr5.2:82997252-82997271 | MS.gene017473:intron | 45.0% |
| ! | TTTAGGGCAAGTCCATGTCA+TGG | - | chr5.2:82995453-82995472 | MS.gene017473:CDS | 45.0% |
| !! | AGTCAAGCTCTAGGGAAAGA+GGG | - | chr5.2:82997103-82997122 | MS.gene017473:intron | 45.0% |
| !! | CCTAGTACTAGTGGTCTTGT+TGG | - | chr5.2:82997526-82997545 | MS.gene017473:intron | 45.0% |
| !! | GGAGTTGGTAAACTTGGAGT+TGG | - | chr5.2:82996950-82996969 | MS.gene017473:intron | 45.0% |
| !! | TAGTCAAGCTCTAGGGAAAG+AGG | - | chr5.2:82997102-82997121 | MS.gene017473:intron | 45.0% |
| !! | AAAAAAATAATAATAATTTC+AGG | - | chr5.2:82996551-82996570 | MS.gene017473:intron | 5.0% |
| AGAGGACTCTCAAACCCAAG+GGG | + | chr5.2:82995311-82995330 | None:intergenic | 50.0% | |
| AGAGGGTGAGTCGAAAGCAA+AGG | - | chr5.2:82997120-82997139 | MS.gene017473:intron | 50.0% | |
| AGATGGAGTTGGCATGATGG+GGG | - | chr5.2:82995672-82995691 | MS.gene017473:CDS | 50.0% | |
| AGTAACACAGGGTTGTCTCC+AGG | + | chr5.2:82995284-82995303 | None:intergenic | 50.0% | |
| ATACCCCTCCATTCCCTTTC+AGG | + | chr5.2:82997241-82997260 | None:intergenic | 50.0% | |
| CAAAGGAGAAGACGAAGCAG+TGG | - | chr5.2:82995109-82995128 | MS.gene017473:CDS | 50.0% | |
| CAAGGGGGTCTAGTAACACA+GGG | + | chr5.2:82995295-82995314 | None:intergenic | 50.0% | |
| GAAAGGAGGTGAGAGGATGT+TGG | - | chr5.2:82997029-82997048 | MS.gene017473:intron | 50.0% | |
| GATCTCACCCTGAAAGGGAA+TGG | - | chr5.2:82997230-82997249 | MS.gene017473:intron | 50.0% | |
| GCAAGATGGAGTTGGCATGA+TGG | - | chr5.2:82995669-82995688 | MS.gene017473:CDS | 50.0% | |
| GGGCTGAAGGGAAAAGGATT+AGG | - | chr5.2:82997061-82997080 | MS.gene017473:intron | 50.0% | |
| GGTAAAAGAGGTCGTTCGAG+TGG | - | chr5.2:82997394-82997413 | MS.gene017473:CDS | 50.0% | |
| GTAACACAGGGTTGTCTCCA+GGG | + | chr5.2:82995283-82995302 | None:intergenic | 50.0% | |
| GTGGTCTCATCTCGCAAATG+AGG | - | chr5.2:82995128-82995147 | MS.gene017473:CDS | 50.0% | |
| TACCCCTCCATTCCCTTTCA+GGG | + | chr5.2:82997240-82997259 | None:intergenic | 50.0% | |
| TCACCCTGAAAGGGAATGGA+GGG | - | chr5.2:82997234-82997253 | MS.gene017473:intron | 50.0% | |
| TGAGATGACCCAGTTCGTTG+AGG | - | chr5.2:82995497-82995516 | MS.gene017473:CDS | 50.0% | |
| TGTTGGTGCAGGCACAATCA+TGG | - | chr5.2:82995055-82995074 | MS.gene017473:CDS | 50.0% | |
| ! | CTGTGTTACTAGACCCCCTT+GGG | - | chr5.2:82995294-82995313 | MS.gene017473:CDS | 50.0% |
| CACCCTGAAAGGGAATGGAG+GGG | - | chr5.2:82997235-82997254 | MS.gene017473:intron | 55.0% | |
| CCAAGGGGGTCTAGTAACAC+AGG | + | chr5.2:82995296-82995315 | None:intergenic | 55.0% | |
| CTCACCCTGAAAGGGAATGG+AGG | - | chr5.2:82997233-82997252 | MS.gene017473:intron | 55.0% | |
| GAGGACTCTCAAACCCAAGG+GGG | + | chr5.2:82995310-82995329 | None:intergenic | 55.0% | |
| GGAGCTAGACATGTTGGTGC+AGG | - | chr5.2:82995044-82995063 | MS.gene017473:CDS | 55.0% | |
| ! | CCTGTGTTACTAGACCCCCT+TGG | - | chr5.2:82995293-82995312 | MS.gene017473:CDS | 55.0% |
| ! | TTGGCATGATGGGGGCGTGT+TGG | - | chr5.2:82995680-82995699 | MS.gene017473:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 82995042 | 82997657 | 82995042 | ID=MS.gene017473 |
| chr5.2 | mRNA | 82995042 | 82997657 | 82995042 | ID=MS.gene017473.t1;Parent=MS.gene017473 |
| chr5.2 | exon | 82997545 | 82997657 | 82997545 | ID=MS.gene017473.t1.exon1;Parent=MS.gene017473.t1 |
| chr5.2 | CDS | 82997545 | 82997657 | 82997545 | ID=cds.MS.gene017473.t1;Parent=MS.gene017473.t1 |
| chr5.2 | exon | 82997342 | 82997434 | 82997342 | ID=MS.gene017473.t1.exon2;Parent=MS.gene017473.t1 |
| chr5.2 | CDS | 82997342 | 82997434 | 82997342 | ID=cds.MS.gene017473.t1;Parent=MS.gene017473.t1 |
| chr5.2 | exon | 82995042 | 82995699 | 82995042 | ID=MS.gene017473.t1.exon3;Parent=MS.gene017473.t1 |
| chr5.2 | CDS | 82995042 | 82995699 | 82995042 | ID=cds.MS.gene017473.t1;Parent=MS.gene017473.t1 |
| Gene Sequence |
| Protein sequence |
