Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017490.t1 | XP_013454459.1 | 98.9 | 277 | 3 | 0 | 181 | 457 | 1 | 277 | 6.90E-154 | 553.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017490.t1 | Q32904 | 88.1 | 277 | 31 | 1 | 181 | 457 | 1 | 275 | 1.1e-139 | 498.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017490.t1 | I3SZG9 | 98.9 | 277 | 3 | 0 | 181 | 457 | 1 | 277 | 5.0e-154 | 553.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene017490.t1 | TR | GNAT |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017490.t1 | MTR_5g098785 | 98.917 | 277 | 3 | 0 | 181 | 457 | 1 | 277 | 0.0 | 560 |
MS.gene017490.t1 | MTR_5g098780 | 95.307 | 277 | 11 | 1 | 181 | 457 | 1 | 275 | 0.0 | 537 |
MS.gene017490.t1 | MTR_5g098790 | 93.252 | 163 | 10 | 1 | 1 | 163 | 1 | 162 | 2.26e-106 | 313 |
MS.gene017490.t1 | MTR_3g101670 | 45.238 | 252 | 116 | 9 | 209 | 454 | 27 | 262 | 5.58e-59 | 194 |
MS.gene017490.t1 | MTR_5g098770 | 94.681 | 94 | 5 | 0 | 364 | 457 | 1 | 94 | 5.11e-56 | 181 |
MS.gene017490.t1 | MTR_8g023790 | 42.500 | 240 | 112 | 7 | 217 | 454 | 50 | 265 | 3.50e-50 | 172 |
MS.gene017490.t1 | MTR_2g042720 | 43.111 | 225 | 101 | 7 | 236 | 454 | 61 | 264 | 5.55e-47 | 163 |
MS.gene017490.t1 | MTR_3g435460 | 41.328 | 271 | 123 | 10 | 193 | 454 | 6 | 249 | 1.52e-46 | 162 |
MS.gene017490.t1 | MTR_3g435460 | 45.673 | 208 | 80 | 8 | 253 | 454 | 8 | 188 | 6.32e-43 | 150 |
MS.gene017490.t1 | MTR_4g094605 | 37.868 | 272 | 131 | 11 | 190 | 449 | 9 | 254 | 4.18e-37 | 137 |
MS.gene017490.t1 | MTR_5g097280 | 38.542 | 288 | 123 | 15 | 181 | 449 | 1 | 253 | 1.91e-36 | 135 |
MS.gene017490.t1 | MTR_6g012080 | 36.559 | 279 | 141 | 10 | 181 | 449 | 1 | 253 | 7.72e-36 | 133 |
MS.gene017490.t1 | MTR_6g011880 | 41.014 | 217 | 93 | 9 | 243 | 449 | 62 | 253 | 9.20e-36 | 133 |
MS.gene017490.t1 | MTR_6g011870 | 41.014 | 217 | 93 | 9 | 243 | 449 | 62 | 253 | 1.12e-35 | 133 |
MS.gene017490.t1 | MTR_6g012110 | 40.553 | 217 | 94 | 9 | 243 | 449 | 62 | 253 | 1.81e-35 | 132 |
MS.gene017490.t1 | MTR_6g011890 | 41.014 | 217 | 93 | 9 | 243 | 449 | 62 | 253 | 2.09e-35 | 132 |
MS.gene017490.t1 | MTR_2g081090 | 41.014 | 217 | 95 | 8 | 243 | 449 | 32 | 225 | 2.36e-35 | 131 |
MS.gene017490.t1 | MTR_2g081090 | 41.014 | 217 | 95 | 8 | 243 | 449 | 59 | 252 | 5.29e-35 | 131 |
MS.gene017490.t1 | MTR_6g033320 | 41.395 | 215 | 93 | 8 | 240 | 450 | 49 | 234 | 3.00e-34 | 129 |
MS.gene017490.t1 | MTR_6g060175 | 38.211 | 246 | 114 | 10 | 221 | 454 | 60 | 279 | 3.91e-33 | 127 |
MS.gene017490.t1 | MTR_1g026550 | 33.333 | 297 | 168 | 10 | 175 | 454 | 44 | 327 | 7.61e-31 | 122 |
MS.gene017490.t1 | MTR_6g060175 | 36.735 | 245 | 109 | 9 | 221 | 454 | 60 | 269 | 4.83e-30 | 118 |
MS.gene017490.t1 | MTR_6g043600 | 35.071 | 211 | 90 | 7 | 245 | 449 | 48 | 217 | 4.90e-27 | 108 |
MS.gene017490.t1 | MTR_4g015570 | 30.418 | 263 | 112 | 6 | 235 | 454 | 52 | 286 | 3.58e-24 | 102 |
MS.gene017490.t1 | MTR_2g008610 | 35.567 | 194 | 91 | 8 | 249 | 427 | 75 | 249 | 6.22e-24 | 100 |
MS.gene017490.t1 | MTR_3g070340 | 30.126 | 239 | 96 | 6 | 239 | 434 | 59 | 269 | 1.16e-17 | 83.2 |
MS.gene017490.t1 | MTR_2g436960 | 53.333 | 75 | 30 | 2 | 380 | 454 | 29 | 98 | 4.92e-15 | 71.2 |
MS.gene017490.t1 | MTR_5g098750 | 57.143 | 63 | 26 | 1 | 390 | 451 | 39 | 101 | 2.23e-14 | 70.1 |
MS.gene017490.t1 | MTR_5g007400 | 27.632 | 152 | 87 | 3 | 14 | 142 | 17 | 168 | 6.41e-13 | 68.9 |
MS.gene017490.t1 | MTR_0003s0060 | 48.000 | 75 | 34 | 2 | 380 | 454 | 22 | 91 | 5.30e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017490.t1 | AT1G61520 | 85.921 | 277 | 35 | 3 | 181 | 457 | 1 | 273 | 9.81e-167 | 470 |
MS.gene017490.t1 | AT1G61520 | 85.921 | 277 | 35 | 3 | 181 | 457 | 1 | 273 | 9.81e-167 | 470 |
MS.gene017490.t1 | AT1G61520 | 89.545 | 220 | 18 | 1 | 238 | 457 | 4 | 218 | 8.40e-143 | 407 |
MS.gene017490.t1 | AT5G11340 | 79.221 | 154 | 32 | 0 | 1 | 154 | 1 | 154 | 3.13e-89 | 269 |
MS.gene017490.t1 | AT1G45474 | 42.188 | 256 | 126 | 9 | 203 | 454 | 14 | 251 | 1.25e-53 | 180 |
MS.gene017490.t1 | AT1G45474 | 42.188 | 256 | 126 | 9 | 203 | 454 | 14 | 251 | 1.25e-53 | 180 |
MS.gene017490.t1 | AT3G61470 | 42.500 | 240 | 115 | 7 | 221 | 454 | 32 | 254 | 1.13e-48 | 167 |
MS.gene017490.t1 | AT3G47470 | 43.651 | 252 | 97 | 10 | 210 | 454 | 37 | 250 | 9.47e-47 | 162 |
MS.gene017490.t1 | AT1G19150 | 38.168 | 262 | 138 | 7 | 198 | 457 | 31 | 270 | 1.88e-44 | 157 |
MS.gene017490.t1 | AT3G27690 | 38.028 | 284 | 131 | 14 | 181 | 449 | 33 | 286 | 2.15e-37 | 139 |
MS.gene017490.t1 | AT3G27690 | 38.028 | 284 | 131 | 14 | 181 | 449 | 1 | 254 | 2.22e-37 | 137 |
MS.gene017490.t1 | AT2G05100 | 38.163 | 283 | 131 | 14 | 181 | 449 | 1 | 253 | 3.81e-37 | 137 |
MS.gene017490.t1 | AT2G05070 | 37.809 | 283 | 132 | 14 | 181 | 449 | 1 | 253 | 2.56e-36 | 135 |
MS.gene017490.t1 | AT1G29930 | 39.114 | 271 | 130 | 10 | 190 | 449 | 9 | 255 | 1.56e-35 | 133 |
MS.gene017490.t1 | AT5G54270 | 41.475 | 217 | 94 | 8 | 243 | 449 | 60 | 253 | 1.88e-35 | 132 |
MS.gene017490.t1 | AT1G29920 | 39.114 | 271 | 130 | 10 | 190 | 449 | 9 | 255 | 4.62e-35 | 131 |
MS.gene017490.t1 | AT1G29910 | 39.114 | 271 | 130 | 10 | 190 | 449 | 9 | 255 | 4.62e-35 | 131 |
MS.gene017490.t1 | AT2G34420 | 37.276 | 279 | 139 | 10 | 181 | 449 | 1 | 253 | 1.63e-34 | 130 |
MS.gene017490.t1 | AT2G34430 | 36.620 | 284 | 132 | 13 | 182 | 449 | 3 | 254 | 4.69e-34 | 129 |
MS.gene017490.t1 | AT3G54890 | 40.465 | 215 | 95 | 8 | 240 | 450 | 48 | 233 | 5.97e-34 | 128 |
MS.gene017490.t1 | AT4G10340 | 39.184 | 245 | 111 | 10 | 222 | 454 | 52 | 270 | 8.94e-33 | 125 |
MS.gene017490.t1 | AT1G76570 | 31.271 | 291 | 157 | 10 | 182 | 455 | 62 | 326 | 1.30e-28 | 115 |
MS.gene017490.t1 | AT3G08940 | 31.250 | 288 | 126 | 7 | 210 | 454 | 26 | 284 | 6.61e-27 | 110 |
MS.gene017490.t1 | AT2G05100 | 35.316 | 269 | 130 | 14 | 181 | 435 | 1 | 239 | 6.91e-27 | 110 |
MS.gene017490.t1 | AT5G01530 | 30.038 | 263 | 113 | 6 | 236 | 455 | 54 | 288 | 8.43e-24 | 101 |
MS.gene017490.t1 | AT1G15820 | 33.735 | 249 | 114 | 13 | 204 | 427 | 24 | 246 | 1.72e-23 | 99.8 |
MS.gene017490.t1 | AT3G54890 | 37.079 | 178 | 80 | 7 | 240 | 414 | 48 | 196 | 5.29e-21 | 91.7 |
MS.gene017490.t1 | AT2G40100 | 30.400 | 250 | 102 | 8 | 232 | 438 | 51 | 271 | 2.13e-16 | 79.7 |
MS.gene017490.t1 | AT5G28450 | 43.137 | 102 | 55 | 2 | 354 | 454 | 71 | 170 | 2.84e-16 | 77.0 |
MS.gene017490.t1 | AT3G54890 | 31.163 | 215 | 81 | 7 | 240 | 450 | 48 | 199 | 8.83e-16 | 76.3 |
Find 125 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGCTTTGCCGAGAATTTC+AGG | 0.135748 | 5.2:+83259864 | None:intergenic |
GTTAGCTATGTTGGCAATAT+TGG | 0.175999 | 5.2:-83259523 | MS.gene017490:CDS |
AAATTTCTTATAAAAGTTAA+TGG | 0.199299 | 5.2:+83263296 | None:intergenic |
TTTGTTCAAGCTCTTGTTAC+AGG | 0.246233 | 5.2:-83259495 | MS.gene017490:CDS |
ATCATCACTTGCAGCCTTCC+TGG | 0.261258 | 5.2:-83260020 | MS.gene017490:intron |
ATATTTAACCCTCTTGGTTT+TGG | 0.269352 | 5.2:-83259600 | MS.gene017490:CDS |
ATGGGAAAACAATACTTCTT+AGG | 0.280187 | 5.2:-83259675 | MS.gene017490:CDS |
CCAGATGATCTAAGAGGTTT+TGG | 0.293540 | 5.2:+83259460 | None:intergenic |
TGATGTTTACGTAATAGTTC+TGG | 0.333615 | 5.2:+83263250 | None:intergenic |
CGGGTTTACATCATGACTTT+AGG | 0.340929 | 5.2:-83263692 | MS.gene017490:CDS |
AGAAGGAAGGTGGGCAAGTT+CGG | 0.349914 | 5.2:-83263712 | MS.gene017490:CDS |
TTAGCTATGTTGGCAATATT+GGG | 0.350553 | 5.2:-83259522 | MS.gene017490:CDS |
AAAGCAAAGTCTTTCTTACT+TGG | 0.368436 | 5.2:-83260890 | MS.gene017490:CDS |
GAAGGAAGGTGGGCAAGTTC+GGG | 0.372201 | 5.2:-83263711 | MS.gene017490:CDS |
AGATCACTCCCATCTTCAAT+AGG | 0.372428 | 5.2:-83261216 | MS.gene017490:CDS |
TTAGGACTTGAGAAAGGTCT+TGG | 0.373705 | 5.2:-83259657 | MS.gene017490:CDS |
TGCAGCCTTCCTGGTGACTT+TGG | 0.374400 | 5.2:-83260011 | MS.gene017490:intron |
TTCTTCAAGAATGTAGTAGA+TGG | 0.375775 | 5.2:+83261354 | None:intergenic |
CCAAAACCTCTTAGATCATC+TGG | 0.385529 | 5.2:-83259460 | MS.gene017490:CDS |
TATTTGTCGTTGTAACGAAC+AGG | 0.385879 | 5.2:+83266485 | None:intergenic |
AATGAATCCACCAGTTCCTT+CGG | 0.395198 | 5.2:+83259962 | None:intergenic |
GAGAAAGGTCTTGGAGGTTC+CGG | 0.403381 | 5.2:-83259648 | MS.gene017490:CDS |
GGACCTATATTTAACCCTCT+TGG | 0.406735 | 5.2:-83259606 | MS.gene017490:CDS |
GGATAGGAAAGAACCTAGTT+TGG | 0.407491 | 5.2:+83266430 | None:intergenic |
CCTTACCGTGGACTTGGTAT+TGG | 0.408366 | 5.2:-83263659 | MS.gene017490:intron |
GAATGGAAGGTTAGCTATGT+TGG | 0.408440 | 5.2:-83259532 | MS.gene017490:CDS |
CAAGCTCTTGTTACAGGAGT+TGG | 0.415706 | 5.2:-83259489 | MS.gene017490:CDS |
GAAGTATCAATCTCATTAGA+TGG | 0.418274 | 5.2:-83266560 | MS.gene017490:CDS |
CTGCAGGAACATACAACTAC+TGG | 0.419959 | 5.2:-83259788 | MS.gene017490:CDS |
TGTGATGGAAATGGCATTCA+TGG | 0.422186 | 5.2:-83259745 | MS.gene017490:CDS |
AGCCAGGATTGTACCAATCT+TGG | 0.425513 | 5.2:+83259700 | None:intergenic |
CAACGGCCGCTTCGCAATGT+TGG | 0.427513 | 5.2:-83259907 | MS.gene017490:CDS |
CAGGTGGAATCACGCCGGTT+TGG | 0.428037 | 5.2:+83259808 | None:intergenic |
TTAGCGCCTTACCGTGGACT+TGG | 0.429752 | 5.2:-83263665 | MS.gene017490:CDS |
ATGAATCCACCAGTTCCTTC+GGG | 0.429905 | 5.2:+83259963 | None:intergenic |
AACGGCCGCTTCGCAATGTT+GGG | 0.433209 | 5.2:-83259906 | MS.gene017490:CDS |
CTAGAAGACCCTATTGAAGA+TGG | 0.437182 | 5.2:+83261207 | None:intergenic |
CACACTCTTTGTGATGGAAA+TGG | 0.442080 | 5.2:-83259754 | MS.gene017490:CDS |
GTCAAGATGTTGTTGTTGAC+AGG | 0.444048 | 5.2:+83259432 | None:intergenic |
CAAAGTCTTTCTTACTTGGA+TGG | 0.445116 | 5.2:-83260886 | MS.gene017490:CDS |
TCAATAGGGTCTTCTAGAAA+AGG | 0.446420 | 5.2:-83261201 | MS.gene017490:CDS |
AAACCAAGAGGGTTAAATAT+AGG | 0.452200 | 5.2:+83259603 | None:intergenic |
GTCTTTCTTACTTGGATGGA+AGG | 0.462256 | 5.2:-83260882 | MS.gene017490:intron |
TTCGCAATGTTGGGAGCAGC+CGG | 0.465502 | 5.2:-83259897 | MS.gene017490:CDS |
AACACAGAAGATTCCAAGAT+TGG | 0.467039 | 5.2:-83259713 | MS.gene017490:CDS |
CTTTCAGATCCCGAAGGAAC+TGG | 0.478080 | 5.2:-83259972 | MS.gene017490:CDS |
TCGCCATATGCTAACCATCT+TGG | 0.478129 | 5.2:+83259936 | None:intergenic |
AAGCTGAAGGAAGTTAAGAA+TGG | 0.479661 | 5.2:-83259549 | MS.gene017490:CDS |
AGTGAGAGATAGACCTTGGC+AGG | 0.481039 | 5.2:+83261147 | None:intergenic |
TGCGTGCCGGCTTGAGAAGA+AGG | 0.483070 | 5.2:-83263729 | MS.gene017490:CDS |
GCTATAGCACCTGAAATTCT+CGG | 0.489754 | 5.2:-83259873 | MS.gene017490:CDS |
AGCTTCTTCTCCTCCTGCCA+AGG | 0.490862 | 5.2:-83261160 | MS.gene017490:intron |
CCGCGGAAACAGCACTCCCT+TGG | 0.495161 | 5.2:-83259833 | MS.gene017490:CDS |
CCTGAAATTCTCGGCAAAGC+AGG | 0.501852 | 5.2:-83259864 | MS.gene017490:CDS |
TCCGCTGATTTCACCAAACT+AGG | 0.503020 | 5.2:-83266443 | MS.gene017490:intron |
TTCCCTCCTTTGTTACCTCT+AGG | 0.504632 | 5.2:+83261318 | None:intergenic |
CATTTAGTGGAACTTGAGAC+TGG | 0.504734 | 5.2:+83259410 | None:intergenic |
GCACTCCCTTGGTTCCAAAC+CGG | 0.505888 | 5.2:-83259822 | MS.gene017490:CDS |
TTGGTACAATCCTGGCTCCA+TGG | 0.508162 | 5.2:-83259694 | MS.gene017490:CDS |
GTGGATTCATTGAGCCAAGA+TGG | 0.509728 | 5.2:-83259950 | MS.gene017490:CDS |
GATCACTCCCATCTTCAATA+GGG | 0.512694 | 5.2:-83261215 | MS.gene017490:CDS |
GAGCCAAGATGGTTAGCATA+TGG | 0.514212 | 5.2:-83259939 | MS.gene017490:CDS |
GTGTTGGCGCAATTGCGTGC+CGG | 0.514629 | 5.2:-83263742 | MS.gene017490:CDS |
GAGGCTGTGAGACAGAGTCT+TGG | 0.514771 | 5.2:-83261243 | MS.gene017490:CDS |
GGACTTGAGAAAGGTCTTGG+AGG | 0.517064 | 5.2:-83259654 | MS.gene017490:CDS |
TAAAGATGAGAAATCATTGA+AGG | 0.521323 | 5.2:-83259577 | MS.gene017490:CDS |
ATAGGTCCACCAGGGTAAGC+TGG | 0.522001 | 5.2:+83259621 | None:intergenic |
AAAAGGTTCCTTTGTTGTCA+AGG | 0.526175 | 5.2:-83261184 | MS.gene017490:CDS |
TGAAGGAAGTTAAGAATGGA+AGG | 0.527760 | 5.2:-83259545 | MS.gene017490:CDS |
CACCTTCCTTCTTCTCAAGC+CGG | 0.529491 | 5.2:+83263723 | None:intergenic |
CAGTAGTTGTATGTTCCTGC+AGG | 0.533860 | 5.2:+83259789 | None:intergenic |
TTCCAAGATTGGTACAATCC+TGG | 0.536164 | 5.2:-83259702 | MS.gene017490:CDS |
AATTTCAGGTGCTATAGCTC+CGG | 0.537587 | 5.2:+83259878 | None:intergenic |
CAAGGGAGTGCTGTTTCCGC+GGG | 0.537601 | 5.2:+83259834 | None:intergenic |
ATCACGCCGGTTTGGAACCA+AGG | 0.543476 | 5.2:+83259816 | None:intergenic |
ACCAGGGTAAGCTGGTTCGC+CGG | 0.543633 | 5.2:+83259629 | None:intergenic |
TAGAAGACCCTATTGAAGAT+GGG | 0.548284 | 5.2:+83261208 | None:intergenic |
CCAAGGGAGTGCTGTTTCCG+CGG | 0.549385 | 5.2:+83259833 | None:intergenic |
TACTTCTTAGGACTTGAGAA+AGG | 0.549404 | 5.2:-83259663 | MS.gene017490:CDS |
CGCGAAGCAGAACATTTCTG+AGG | 0.551841 | 5.2:-83263352 | MS.gene017490:CDS |
TTCCTAGAGGTAACAAAGGA+GGG | 0.554204 | 5.2:-83261320 | MS.gene017490:CDS |
TACTACAGTGACATTTGTGT+TGG | 0.556487 | 5.2:-83263758 | MS.gene017490:CDS |
TTTGGGTTTATGCAGGAACA+AGG | 0.566199 | 5.2:-83263401 | MS.gene017490:intron |
GAAGTAGAATCAATGGGAGC+TGG | 0.568816 | 5.2:-83266587 | None:intergenic |
GACTTTGGATTTGACCCTCT+AGG | 0.569949 | 5.2:-83259996 | MS.gene017490:CDS |
TAGTTGTATGTTCCTGCAGG+TGG | 0.570487 | 5.2:+83259792 | None:intergenic |
CGGCTTGAGAAGAAGGAAGG+TGG | 0.571876 | 5.2:-83263722 | MS.gene017490:CDS |
GGCTTGAGAAGAAGGAAGGT+GGG | 0.574382 | 5.2:-83263721 | MS.gene017490:CDS |
ACCGGCGTGATTCCACCTGC+AGG | 0.575662 | 5.2:-83259804 | MS.gene017490:CDS |
TGGTACAATCCTGGCTCCAT+GGG | 0.575675 | 5.2:-83259693 | MS.gene017490:CDS |
GGGTTAAATATAGGTCCACC+AGG | 0.578557 | 5.2:+83259612 | None:intergenic |
TAACTACACACTCTTTGTGA+TGG | 0.580645 | 5.2:-83259760 | MS.gene017490:CDS |
GTGATGGAAATGGCATTCAT+GGG | 0.581162 | 5.2:-83259744 | MS.gene017490:CDS |
ATTGAAGGAGTTAAAGCTGA+AGG | 0.587176 | 5.2:-83259562 | MS.gene017490:CDS |
CATCTTTACCAAAACCAAGA+GGG | 0.593825 | 5.2:+83259592 | None:intergenic |
TGCCGGCTTGAGAAGAAGGA+AGG | 0.603686 | 5.2:-83263725 | MS.gene017490:CDS |
CTTGTTCCTAGAGGTAACAA+AGG | 0.604243 | 5.2:-83261324 | MS.gene017490:CDS |
GAGAGATAGACCTTGGCAGG+AGG | 0.606963 | 5.2:+83261150 | None:intergenic |
GGTCAGCCAGATGATCTAAG+AGG | 0.611676 | 5.2:+83259454 | None:intergenic |
CCAATACCAAGTCCACGGTA+AGG | 0.611714 | 5.2:+83263659 | None:intergenic |
ATGGAGCAAATAGACAATTG+TGG | 0.612091 | 5.2:-83260921 | MS.gene017490:CDS |
GTTCCTAGAGGTAACAAAGG+AGG | 0.614577 | 5.2:-83261321 | MS.gene017490:CDS |
TGCAGGAACATACAACTACT+GGG | 0.614884 | 5.2:-83259787 | MS.gene017490:CDS |
AGAAGCTGCCTTGACAACAA+AGG | 0.615553 | 5.2:+83261176 | None:intergenic |
CGGGATCTGAAAGTCCTAGA+GGG | 0.617233 | 5.2:+83259982 | None:intergenic |
GGCGAACCAGCTTACCCTGG+TGG | 0.618672 | 5.2:-83259627 | MS.gene017490:CDS |
TCAGATCCCGAAGGAACTGG+TGG | 0.619183 | 5.2:-83259969 | MS.gene017490:CDS |
TCCGGCGAACCAGCTTACCC+TGG | 0.621275 | 5.2:-83259630 | MS.gene017490:CDS |
TCACGCCGGTTTGGAACCAA+GGG | 0.621949 | 5.2:+83259817 | None:intergenic |
GGGTCAAATCCAAAGTCACC+AGG | 0.625690 | 5.2:+83260002 | None:intergenic |
ATTTGTCGTTGTAACGAACA+GGG | 0.627678 | 5.2:+83266486 | None:intergenic |
TCTTACCAATACCAAGTCCA+CGG | 0.630487 | 5.2:+83263654 | None:intergenic |
CAAAGCAGGTTTAATTCCCG+CGG | 0.641267 | 5.2:-83259850 | MS.gene017490:CDS |
ACCTAGTTTGGTGAAATCAG+CGG | 0.645414 | 5.2:+83266442 | None:intergenic |
TCAAGATGTTGTTGTTGACA+GGG | 0.645710 | 5.2:+83259433 | None:intergenic |
TCCTGCAGGTGGAATCACGC+CGG | 0.649684 | 5.2:+83259803 | None:intergenic |
CAAATCCAAAGTCACCAGGA+AGG | 0.653377 | 5.2:+83260006 | None:intergenic |
CTGCTCCCAACATTGCGAAG+CGG | 0.660409 | 5.2:+83259901 | None:intergenic |
CTAGGACTTTCAGATCCCGA+AGG | 0.660487 | 5.2:-83259978 | MS.gene017490:CDS |
TCGGGATCTGAAAGTCCTAG+AGG | 0.663238 | 5.2:+83259981 | None:intergenic |
TCATCTTTACCAAAACCAAG+AGG | 0.664345 | 5.2:+83259591 | None:intergenic |
GCATATGGCGAGATAATCAA+CGG | 0.667486 | 5.2:-83259924 | MS.gene017490:CDS |
TAACAAAGGAGGGAAGAACA+TGG | 0.683240 | 5.2:-83261310 | MS.gene017490:CDS |
GGTTAAATATAGGTCCACCA+GGG | 0.744381 | 5.2:+83259613 | None:intergenic |
GTGACAACATAACAGTCTGG+TGG | 0.757743 | 5.2:+83263225 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 83259413 | 83266597 | 83259413 | ID=MS.gene017490 |
chr5.2 | mRNA | 83259413 | 83266597 | 83259413 | ID=MS.gene017490.t1;Parent=MS.gene017490 |
chr5.2 | exon | 83266444 | 83266597 | 83266444 | ID=MS.gene017490.t1.exon1;Parent=MS.gene017490.t1 |
chr5.2 | CDS | 83266444 | 83266597 | 83266444 | ID=cds.MS.gene017490.t1;Parent=MS.gene017490.t1 |
chr5.2 | exon | 83263660 | 83263782 | 83263660 | ID=MS.gene017490.t1.exon2;Parent=MS.gene017490.t1 |
chr5.2 | CDS | 83263660 | 83263782 | 83263660 | ID=cds.MS.gene017490.t1;Parent=MS.gene017490.t1 |
chr5.2 | exon | 83263238 | 83263408 | 83263238 | ID=MS.gene017490.t1.exon3;Parent=MS.gene017490.t1 |
chr5.2 | CDS | 83263238 | 83263408 | 83263238 | ID=cds.MS.gene017490.t1;Parent=MS.gene017490.t1 |
chr5.2 | exon | 83261161 | 83261405 | 83261161 | ID=MS.gene017490.t1.exon4;Parent=MS.gene017490.t1 |
chr5.2 | CDS | 83261161 | 83261405 | 83261161 | ID=cds.MS.gene017490.t1;Parent=MS.gene017490.t1 |
chr5.2 | exon | 83260883 | 83260947 | 83260883 | ID=MS.gene017490.t1.exon5;Parent=MS.gene017490.t1 |
chr5.2 | CDS | 83260883 | 83260947 | 83260883 | ID=cds.MS.gene017490.t1;Parent=MS.gene017490.t1 |
chr5.2 | exon | 83259413 | 83260028 | 83259413 | ID=MS.gene017490.t1.exon6;Parent=MS.gene017490.t1 |
chr5.2 | CDS | 83259413 | 83260028 | 83259413 | ID=cds.MS.gene017490.t1;Parent=MS.gene017490.t1 |
Gene Sequence |
Protein sequence |