AlfalfaGEDB | MS.gene017595

M. sativa cultivar XinJiangDaYe / MS.gene017595

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017595.t1	XP_003629240.2	95.1	426	21	0	1	426	1	426	8.90E-236	825.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017595.t1	Q9LK35	42.1	328	178	3	41	362	468	789	8.0e-68	259.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017595.t1	G7LB43	95.1	426	21	0	1	426	1	426	6.4e-236	825.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017595.t1	MTR_8g074920	95.070	426	21	0	1	426	1	426	0.0	847
MS.gene017595.t1	MTR_8g467150	44.073	329	167	5	62	384	434	751	3.92e-79	260
MS.gene017595.t1	MTR_2g080220	43.243	296	162	2	63	358	488	777	4.04e-76	253
MS.gene017595.t1	MTR_1g040073	43.671	316	168	3	63	374	419	728	7.10e-76	251
MS.gene017595.t1	MTR_8g037700	42.857	308	167	5	63	369	517	816	3.76e-75	251
MS.gene017595.t1	MTR_7g083500	40.000	320	177	8	63	376	66	376	2.73e-74	239
MS.gene017595.t1	MTR_5g038870	42.157	306	159	7	61	355	60	358	2.67e-73	236
MS.gene017595.t1	MTR_6g011570	40.523	306	164	4	61	354	51	350	8.73e-73	235
MS.gene017595.t1	MTR_8g063300	39.241	316	177	5	64	376	50	353	2.85e-72	231
MS.gene017595.t1	MTR_7g015310	40.688	349	198	6	13	358	460	802	4.53e-72	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017595.t1	AT5G54380	42.073	328	178	3	41	362	468	789	2.21e-78	259
MS.gene017595.t1	AT2G28930	41.558	308	160	6	61	355	53	353	3.56e-74	238
MS.gene017595.t1	AT1G07870	41.237	291	161	5	63	349	89	373	3.89e-74	238
MS.gene017595.t1	AT2G28930	41.234	308	161	6	61	355	64	364	4.87e-74	238
MS.gene017595.t1	AT2G28930	41.558	308	160	6	61	355	56	356	5.28e-74	238
MS.gene017595.t1	AT1G51850	39.142	373	206	9	13	375	510	871	1.02e-73	248
MS.gene017595.t1	AT1G51850	39.142	373	206	9	13	375	490	851	1.43e-73	247
MS.gene017595.t1	AT1G07870	41.017	295	164	5	63	353	89	377	4.76e-73	239
MS.gene017595.t1	AT1G30570	42.671	307	164	6	63	366	506	803	6.99e-73	245
MS.gene017595.t1	AT1G14370	41.830	306	160	5	61	355	70	368	2.24e-72	234

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Find 92 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGTAACATACTATT+AGG	0.335229	8.3:-28449919	MS.gene017595:CDS
AACAAGGATTCAGAAACCCT+TGG	0.543061	8.3:-28448981	MS.gene017595:CDS
AAGAATCTTATTGGTCTGGT+TGG	0.469475	8.3:-28450859	MS.gene017595:CDS
AAGCAACCTAAGGCTTTGAA+AGG	0.541298	8.3:-28451536	MS.gene017595:intron
AAGGGAACATTTGAGTTAGA+AGG	0.345630	8.3:-28451237	MS.gene017595:CDS
AATATGACAAAATATCTTTA+AGG	0.214695	8.3:-28451347	MS.gene017595:CDS
ACAGAAGGAGAAGCTTAACT+TGG	0.533150	8.3:-28450104	MS.gene017595:CDS
ACAGTGTTCCACTGATCCAA+GGG	0.599201	8.3:+28448965	None:intergenic
ACATGTGATTGATCACCAGT+AGG	0.665654	8.3:+28449847	None:intergenic
ACCCTGGTGTCCCTTTGATT+TGG	0.345836	8.3:+28449818	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATTCTCAACATTGTGC+TGG	-	chr8.3:28449757-28449776	MS.gene017595:CDS	30.0%
AGTAACATACTATTAGGAGA+AGG	-	chr8.3:28450552-28450571	MS.gene017595:intron	30.0%
ATAAATTCGAATGTTCAACC+TGG	-	chr8.3:28450908-28450927	MS.gene017595:intron	30.0%
ATCTGCACATAATATATTGG+TGG	-	chr8.3:28448826-28448845	MS.gene017595:CDS	30.0%
ATTTGCTTGGTACATCTTAT+AGG	-	chr8.3:28450471-28450490	MS.gene017595:intron	30.0%
CAATTTATACATATTGCTCC+AGG	-	chr8.3:28451105-28451124	MS.gene017595:intron	30.0%
CCTTAAGTTTATGCTCTTAA+AGG	+	chr8.3:28451599-28451618	None:intergenic	30.0%
CTTAAGAATGATTCAGAATG+AGG	+	chr8.3:28449273-28449292	None:intergenic	30.0%
GTCTATGAATATGTACCAAA+TGG	-	chr8.3:28449855-28449874	MS.gene017595:CDS	30.0%
TACAAATCCATCTCTTTCAA+AGG	+	chr8.3:28449011-28449030	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	28448806	28451681	28448806	ID=MS.gene017595
chr8.3	mRNA	28448806	28451681	28448806	ID=MS.gene017595.t1;Parent=MS.gene017595
chr8.3	exon	28451537	28451681	28451537	ID=MS.gene017595.t1.exon1;Parent=MS.gene017595.t1
chr8.3	CDS	28451537	28451681	28451537	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1
chr8.3	exon	28451175	28451390	28451175	ID=MS.gene017595.t1.exon2;Parent=MS.gene017595.t1
chr8.3	CDS	28451175	28451390	28451175	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1
chr8.3	exon	28450842	28450910	28450842	ID=MS.gene017595.t1.exon3;Parent=MS.gene017595.t1
chr8.3	CDS	28450842	28450910	28450842	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1
chr8.3	exon	28450587	28450655	28450587	ID=MS.gene017595.t1.exon4;Parent=MS.gene017595.t1
chr8.3	CDS	28450587	28450655	28450587	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1
chr8.3	exon	28450067	28450129	28450067	ID=MS.gene017595.t1.exon5;Parent=MS.gene017595.t1
chr8.3	CDS	28450067	28450129	28450067	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1
chr8.3	exon	28449672	28449994	28449672	ID=MS.gene017595.t1.exon6;Parent=MS.gene017595.t1
chr8.3	CDS	28449672	28449994	28449672	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1
chr8.3	exon	28448806	28449210	28448806	ID=MS.gene017595.t1.exon7;Parent=MS.gene017595.t1
chr8.3	CDS	28448806	28449210	28448806	ID=cds.MS.gene017595.t1;Parent=MS.gene017595.t1

Gene Sequence

>MS.gene017595

ATGGTTGATGGAAGAAATGCATCTGCACATAATATATTGGTGGGATTTATTGCAGGCATTTCAACAGTTATGGCATTGGCCTTATTGTTCTACCTCTTCTGGAAAAGGATCATTCCATTTCTTAAGCAACCTAAGGCTTTGAAAGGTTAGTAAGTCGGTTGTTATGTTAGTTTTCAGAGATATGAGTCTGAGAATTACCTAACCTTTGAAAGAGATGGATTTGTACAATTTAATTTGTTATTTCATTTACCTAATTTGTTATGTCTTTGGATTTTTTTTCTTTTGATGCAGGAAAGGAGTATAAAAGCTCGAAATATGACAAAATATCTTTAAGGTGTTTTACTATTGAGGAACTAGAGAGAGCTACCAAAAAATTTAGCCAAGATTGCTTATTAGGTTCTGGTGCATTTTGTAATGTCTATAAGGGAACATTTGAGTTAGAAGGATTACTAGCCATAAAAAGACCTCATTCTGAATCATTCTTAAGTGTTGAGGAATTTAGAAATGGTCAGCCTTAAAAATGATATACCTGCTTGCTTTACTCTTGTTTATACTCCTCACAACTCTCACAAAATTTACATTTTTTGTTTTTAGCCTCTAGAAATTACAAAATTACATATTTGATACCAAAAGCTTGTAGTTTTGGAATTTGTCGAACTAAAGTGGATATAGCGACTAAAACCAAAATTTGAGATAATTAAGGAGACTAAAAATATATATAACCCTTCAATTTAATGTACTTAATTAATGGTTTTTCTTTGTTCTTGGCAGAAGTTAGGCTTCTTTCAGCAGTAAAGCATAAGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGGTAACAACTATATCAAAGGAAAAAATTTCTAGTTTTTAATTGTGCTTTAAAAAATCATTGTGTATGCTATTTTTTGCAAAAGAATGTTGCTTTGGTAACTTTGGTAGCTTGAATTATTCTCAACATTGTGCTGGATTTATTCCAACAAAATTTCATGCTAAAATGAACTAATTGTGTTTTGATCAGAACGAGATGGAGCAAAAATACTAGTCTATGAATATGTACCAAATGGTTCACTCTTGGAATACATGATGGGTAAGTTGACTGAAATTTCTTCTTAAAGTATATTAATACTATATTGCTATACAAGTAATTGTTAAGGAACCAATAGCCTTAAAATTAAGCTATTATGTGTAAAATCAAACAAGGCAACAAGAATTAAAACATAAACAACTTGGTCAGAAAAAAAAAAAAATTGGTCAAAAAGGATTTTACATCACATTAAGGAACAAACAGTACTAATACATTTAAAACTATCAAAATAAAGCTCTAAGGCTAGGTATTATCATGGTTTTAAATTCTGGTTGCGGTTGTGATTGTATTAACATTGTGATCTCGATATTGCGAAAAACATTGTAGACAAATACAACCAATGCATTCACAGTTACAGTAACTATGTGGTTGCATAGACTTCTAAAATATTTGTCGTGCAGATCACAATTTGAAACCATGGCTCTTAGCGAACACCACTGACGAATATTGGCTTTTGTAGGAAACAGAAGGAGAAGCTTAACTTGGAAGCAAAGAATAAACATAGCAATTGGAGCAGCTAAAGGTATATTTTTTTAACTTTTCAAATAATGCTCCGAGTTCATTTAACAAGAAATTTGCTTGGTACATCTTATAGGCATAGCTTATCTGCATGAAAAGGTGAAGCCAAGCATAATCCATCGTGACATCAAACCAAGTAACATACTATTAGGAGAAGGCTTTGAGGCCAAGGTTTCAGATTTTGGGCTGGTAAAATCAGGTCCTACTGGTGATCAATCACATGTCAGTAGCCAAATCAAAGGGACACCAGGGTACCTTGACCCTGCATATTGTTCAAGCTGCCATTTGACCAAATTCAGTGATGTGTATAGCTTTGGTGTCATAATTTTGCAACTTATTTCAGCTAGACCTGCAGTGGATAATGCTGAAAACCCAAGTAACCAACATATTATTGATTGGGTAAGGAATGCAAAAACCACTCAATCTTTCATTATATATCTACCCGCTAAAGATTTGCATTTGTCCTTGAGAAAAATACATTTTTAGTCGCTATAAATTCGAATGTTCAACCTGGTTTGACAAAAACGAAGAAAAATAAATGTGAGTTAAGTTTTGAGCCGCTCGTATTTATTTTTCCTTACTTTTACCAAAATTATATGGATCATGTCTATTTCTCAAATGTTGCAACAAAAAGGACCCATGAACATCTACTTTCAAGGACCAACATCAACCATGTTAGAGTTTCGGACAATTTATACATATTGCTCCAGGGTATCAAAGTGGTCCACCATAGAACTTGTCATGTAAATAAATATTTTTCGGTAGGACTAAACAAATATTCTTAATTTTATAGGGAATAACAACATACTAAATCATTTAATAAACTATATATCTATTATATAACTTGGTATGTCTTGCAGGCAAGACCTAGCATAGAGAAAGGTAACATTGCAGAAATCATGGATGCAAATTTATTTTGTCAGAATGAGCCATGCAACATGGAAGTTATGCTAAAGCTGGGGCAACTTGGTATAAGATGTGTAGCTCAAGAACCAAAACATCGTCCCACAATGACCCAAGTTTGTAAAGAACTAGAACATGCCCTCCACTCAGATGATAGCTTCACTAACAAGGATTCAGAAACCCTTGGATCAGTGGAACACTGTGATTTTTCACAGGGCTTTGTGAGCATAGAAGGTGCTGGACTTGAGAAATTTCATATTGATATGGACAGCTTCTCCTTTAAGAGCATAAACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATTGACAAGAAAAGTTTGACAAGAAATCAATAG

Protein sequence

>MS.gene017595.t1

MVDGRNASAHNILVGFIAGISTVMALALLFYLFWKRIIPFLKQPKALKGKEYKSSKYDKISLRCFTIEELERATKKFSQDCLLGSGAFCNVYKGTFELEGLLAIKRPHSESFLSVEEFRNEVRLLSAVKHKNLIGLVGYCEEPERDGAKILVYEYVPNGSLLEYMMGNRRRSLTWKQRINIAIGAAKGIAYLHEKVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSCHLTKFSDVYSFGVIILQLISARPAVDNAENPSNQHIIDWARPSIEKGNIAEIMDANLFCQNEPCNMEVMLKLGQLGIRCVAQEPKHRPTMTQVCKELEHALHSDDSFTNKDSETLGSVEHCDFSQGFVSIEGAGLEKFHIDMDSFSFKSINLRCLENNSISIDIDKKSLTRNQ