Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017666.t1 | XP_003629365.1 | 88.7 | 293 | 31 | 1 | 1 | 293 | 1 | 291 | 2.10E-135 | 491.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017666.t1 | Q9FH57 | 44.1 | 315 | 143 | 5 | 7 | 288 | 3 | 317 | 2.6e-54 | 213.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017666.t1 | G7LD10 | 88.7 | 293 | 31 | 1 | 1 | 293 | 1 | 291 | 1.5e-135 | 491.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene017666.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017666.t1 | MTR_8g076340 | 93.857 | 293 | 16 | 1 | 1 | 293 | 1 | 291 | 0.0 | 514 |
MS.gene017666.t1 | MTR_5g021340 | 46.866 | 335 | 122 | 11 | 1 | 292 | 51 | 372 | 1.99e-69 | 220 |
MS.gene017666.t1 | MTR_4g071590 | 40.656 | 305 | 140 | 9 | 1 | 289 | 1 | 280 | 1.26e-56 | 184 |
MS.gene017666.t1 | MTR_4g471590 | 40.656 | 305 | 140 | 9 | 1 | 289 | 1 | 280 | 1.26e-56 | 184 |
MS.gene017666.t1 | MTR_3g117380 | 40.780 | 282 | 143 | 8 | 25 | 293 | 35 | 305 | 7.79e-53 | 175 |
MS.gene017666.t1 | MTR_8g013950 | 40.070 | 287 | 112 | 9 | 41 | 289 | 31 | 295 | 1.27e-50 | 170 |
MS.gene017666.t1 | MTR_3g109760 | 41.538 | 260 | 140 | 4 | 40 | 290 | 21 | 277 | 1.45e-49 | 167 |
MS.gene017666.t1 | MTR_1g006650 | 40.780 | 282 | 134 | 8 | 42 | 290 | 23 | 304 | 1.98e-47 | 162 |
MS.gene017666.t1 | MTR_6g032830 | 40.541 | 222 | 80 | 7 | 115 | 284 | 35 | 256 | 4.74e-40 | 140 |
MS.gene017666.t1 | MTR_7g085410 | 42.202 | 218 | 80 | 6 | 109 | 284 | 39 | 252 | 4.30e-38 | 135 |
MS.gene017666.t1 | MTR_1g046680 | 73.333 | 75 | 20 | 0 | 218 | 292 | 170 | 244 | 8.17e-36 | 129 |
MS.gene017666.t1 | MTR_1g116010 | 38.710 | 217 | 82 | 7 | 115 | 288 | 26 | 234 | 1.69e-35 | 128 |
MS.gene017666.t1 | MTR_2g094600 | 52.083 | 144 | 52 | 6 | 153 | 284 | 142 | 280 | 4.45e-34 | 126 |
MS.gene017666.t1 | MTR_1g094930 | 36.226 | 265 | 95 | 9 | 89 | 286 | 51 | 308 | 1.02e-32 | 123 |
MS.gene017666.t1 | MTR_5g007600 | 68.000 | 75 | 24 | 0 | 218 | 292 | 257 | 331 | 1.24e-32 | 123 |
MS.gene017666.t1 | MTR_5g007600 | 71.212 | 66 | 19 | 0 | 218 | 283 | 155 | 220 | 1.74e-29 | 114 |
MS.gene017666.t1 | MTR_1g094930 | 76.119 | 67 | 16 | 0 | 220 | 286 | 147 | 213 | 1.85e-32 | 120 |
MS.gene017666.t1 | MTR_4g058910 | 67.532 | 77 | 23 | 1 | 218 | 292 | 312 | 388 | 1.11e-31 | 122 |
MS.gene017666.t1 | MTR_7g445950 | 32.402 | 179 | 90 | 7 | 107 | 281 | 30 | 181 | 2.19e-20 | 86.7 |
MS.gene017666.t1 | MTR_7g446110 | 56.452 | 62 | 27 | 0 | 220 | 281 | 187 | 248 | 9.96e-20 | 86.7 |
MS.gene017666.t1 | MTR_7g446070 | 30.508 | 177 | 108 | 4 | 107 | 281 | 30 | 193 | 1.20e-17 | 79.7 |
MS.gene017666.t1 | MTR_7g445980 | 53.030 | 66 | 30 | 1 | 218 | 282 | 31 | 96 | 2.03e-17 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017666.t1 | AT5G66320 | 45.455 | 319 | 133 | 7 | 7 | 288 | 3 | 317 | 5.58e-70 | 220 |
MS.gene017666.t1 | AT5G66320 | 45.455 | 319 | 133 | 7 | 7 | 288 | 3 | 317 | 5.58e-70 | 220 |
MS.gene017666.t1 | AT3G51080 | 45.455 | 275 | 118 | 8 | 43 | 292 | 26 | 293 | 1.51e-60 | 195 |
MS.gene017666.t1 | AT4G32890 | 40.143 | 279 | 107 | 8 | 43 | 289 | 16 | 266 | 2.90e-53 | 176 |
MS.gene017666.t1 | AT4G36240 | 42.292 | 253 | 124 | 5 | 40 | 292 | 6 | 236 | 4.77e-53 | 173 |
MS.gene017666.t1 | AT4G34680 | 39.116 | 294 | 129 | 11 | 1 | 289 | 1 | 249 | 2.15e-45 | 154 |
MS.gene017666.t1 | AT4G34680 | 39.116 | 294 | 129 | 11 | 1 | 289 | 1 | 249 | 2.15e-45 | 154 |
MS.gene017666.t1 | AT3G60530 | 45.989 | 187 | 77 | 4 | 102 | 288 | 64 | 226 | 2.58e-44 | 151 |
MS.gene017666.t1 | AT2G45050 | 42.920 | 226 | 94 | 6 | 78 | 290 | 46 | 249 | 9.31e-44 | 150 |
MS.gene017666.t1 | AT5G25830 | 38.869 | 283 | 129 | 11 | 44 | 289 | 13 | 288 | 2.67e-43 | 151 |
MS.gene017666.t1 | AT3G24050 | 67.901 | 81 | 26 | 0 | 206 | 286 | 180 | 260 | 4.96e-36 | 130 |
MS.gene017666.t1 | AT1G08010 | 70.833 | 72 | 21 | 0 | 217 | 288 | 217 | 288 | 3.51e-33 | 124 |
MS.gene017666.t1 | AT1G08010 | 70.833 | 72 | 21 | 0 | 217 | 288 | 217 | 288 | 3.51e-33 | 124 |
MS.gene017666.t1 | AT1G08010 | 70.833 | 72 | 21 | 0 | 217 | 288 | 217 | 288 | 3.51e-33 | 124 |
MS.gene017666.t1 | AT3G54810 | 76.471 | 68 | 16 | 0 | 220 | 287 | 229 | 296 | 5.40e-32 | 121 |
MS.gene017666.t1 | AT3G54810 | 76.471 | 68 | 16 | 0 | 220 | 287 | 229 | 296 | 5.40e-32 | 121 |
MS.gene017666.t1 | AT1G08000 | 69.444 | 72 | 22 | 0 | 217 | 288 | 215 | 286 | 3.57e-31 | 118 |
MS.gene017666.t1 | AT1G08000 | 69.444 | 72 | 22 | 0 | 217 | 288 | 215 | 286 | 3.57e-31 | 118 |
MS.gene017666.t1 | AT3G45170 | 65.714 | 70 | 24 | 0 | 222 | 291 | 117 | 186 | 1.68e-29 | 111 |
MS.gene017666.t1 | AT2G28340 | 64.615 | 65 | 23 | 0 | 222 | 286 | 193 | 257 | 3.21e-25 | 102 |
MS.gene017666.t1 | AT2G18380 | 33.088 | 136 | 77 | 4 | 118 | 252 | 2 | 124 | 3.73e-12 | 64.7 |
MS.gene017666.t1 | AT5G26930 | 57.143 | 42 | 18 | 0 | 214 | 255 | 20 | 61 | 4.87e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGCATCTCAATAACTTTC+CGG | 0.265019 | 8.2:-29049874 | None:intergenic |
CGGAAGAAGGAGGTTGTTCC+CGG | 0.283078 | 8.2:+29049896 | MS.gene017666:CDS |
GATGAATTGGCTAATGAAAT+TGG | 0.328161 | 8.2:-29049563 | None:intergenic |
AACAAACTGGTTGTTGAGTA+TGG | 0.356636 | 8.2:-29049191 | None:intergenic |
TTGTGGGGTTCGTTATAAAT+CGG | 0.359488 | 8.2:+29049781 | MS.gene017666:CDS |
GAGTACCGGAACGGTGAGTT+CGG | 0.425105 | 8.2:-29049227 | None:intergenic |
TTCATGTTCTTGTTCTTCGT+TGG | 0.429278 | 8.2:-29049080 | None:intergenic |
TGGAGTGTGAAATTTCGTTT+TGG | 0.430031 | 8.2:-29049171 | None:intergenic |
GCTTGAGGTTGAAGATGAAT+TGG | 0.445209 | 8.2:-29049576 | None:intergenic |
ACGCCTCTTGCTTCTCCGTC+CGG | 0.456416 | 8.2:-29049674 | None:intergenic |
AAATCTTCTAACAACGTTTG+TGG | 0.458911 | 8.2:-29048989 | None:intergenic |
CCTGGTCCGGCTCGCCATTG+AGG | 0.462863 | 8.2:-29049734 | None:intergenic |
TAAATCGGGTCGGTTGTTAC+CGG | 0.468838 | 8.2:+29049796 | MS.gene017666:CDS |
AGAAGCAAGAGAACTAGAAC+GGG | 0.473153 | 8.2:+29049527 | MS.gene017666:CDS |
TGTGGGGTTCGTTATAAATC+GGG | 0.473414 | 8.2:+29049782 | MS.gene017666:CDS |
TGAACATTCCTCGAGGTTTG+AGG | 0.473610 | 8.2:-29049615 | None:intergenic |
AAACACTTTGTAATGCTTGT+GGG | 0.474975 | 8.2:+29049765 | MS.gene017666:CDS |
GGTGTTGAAAACGTGGGTTT+TGG | 0.479696 | 8.2:-29049473 | None:intergenic |
TACTTCCGAACTCACCGTTC+CGG | 0.482592 | 8.2:+29049222 | MS.gene017666:CDS |
CTACAAGCCGGTCTATATTC+CGG | 0.483189 | 8.2:-29049815 | None:intergenic |
CATCTACAGGAGCTATGTCT+TGG | 0.484747 | 8.2:-29049027 | None:intergenic |
AAGAAGCTGCTGATTTAGAA+TGG | 0.493576 | 8.2:+29049372 | MS.gene017666:CDS |
AAGTAGGTAATGAAACAAAC+TGG | 0.494133 | 8.2:-29049204 | None:intergenic |
CCTCAATGGCGAGCCGGACC+AGG | 0.495319 | 8.2:+29049734 | MS.gene017666:CDS |
AGAAAGTGTAGTTGAGCTTG+AGG | 0.499899 | 8.2:-29049591 | None:intergenic |
TATTGAGATGCGGCGGAAGA+AGG | 0.503721 | 8.2:+29049883 | MS.gene017666:CDS |
CTAGAACGGGTATTCGTGTA+TGG | 0.507115 | 8.2:+29049540 | MS.gene017666:CDS |
AAAACACTTTGTAATGCTTG+TGG | 0.520445 | 8.2:+29049764 | MS.gene017666:CDS |
AAGCAAGAGGCGTGCCGCGG+CGG | 0.524432 | 8.2:+29049684 | MS.gene017666:CDS |
AAGACTCCTCAATGGCGAGC+CGG | 0.535933 | 8.2:+29049728 | MS.gene017666:CDS |
TCGACAAAGAAATCATCTAC+AGG | 0.546740 | 8.2:-29049040 | None:intergenic |
CAATGGCGAGCCGGACCAGG+TGG | 0.553655 | 8.2:+29049737 | MS.gene017666:CDS |
AGCGAAGAGGATGATTTCAC+CGG | 0.558122 | 8.2:+29049655 | MS.gene017666:CDS |
ATGTTTCAAAACTCCTGTAC+CGG | 0.560011 | 8.2:+29049496 | MS.gene017666:CDS |
CGAGGAATGTTCAAAGCCAC+CGG | 0.566500 | 8.2:+29049625 | MS.gene017666:CDS |
AAGAAGCAAGAGAACTAGAA+CGG | 0.568306 | 8.2:+29049526 | MS.gene017666:CDS |
AACACTTTGTAATGCTTGTG+GGG | 0.570684 | 8.2:+29049766 | MS.gene017666:CDS |
AATTGCATTCAAATCATCAC+CGG | 0.574316 | 8.2:+29049855 | MS.gene017666:CDS |
GAGAAGCAAGAGGCGTGCCG+CGG | 0.580601 | 8.2:+29049681 | MS.gene017666:CDS |
GGAACGGTGAGTTCGGAAGT+AGG | 0.583372 | 8.2:-29049220 | None:intergenic |
AATGGCGAGCCGGACCAGGT+GGG | 0.586994 | 8.2:+29049738 | MS.gene017666:CDS |
GTTGTTACCGGAATATAGAC+CGG | 0.588332 | 8.2:+29049808 | MS.gene017666:CDS |
GCAATTCACTCGAAAACGTA+GGG | 0.597483 | 8.2:-29049838 | None:intergenic |
GGGTTCGTTATAAATCGGGT+CGG | 0.607157 | 8.2:+29049786 | MS.gene017666:CDS |
TGAGATGCGGCGGAAGAAGG+AGG | 0.620640 | 8.2:+29049886 | MS.gene017666:CDS |
AAGAGGATGATTTCACCGGA+CGG | 0.639911 | 8.2:+29049659 | MS.gene017666:CDS |
ACCGGAAAGTTATTGAGATG+CGG | 0.641146 | 8.2:+29049873 | MS.gene017666:CDS |
GAAACATGGTGTTGAAAACG+TGG | 0.645272 | 8.2:-29049480 | None:intergenic |
TCACCGGACGGAGAAGCAAG+AGG | 0.653220 | 8.2:+29049671 | MS.gene017666:CDS |
GAATAGAGAGAGTACCGGAA+CGG | 0.659982 | 8.2:-29049236 | None:intergenic |
TGCAATTCACTCGAAAACGT+AGG | 0.661564 | 8.2:-29049839 | None:intergenic |
GTGTGCAGAAGACTCCTCAA+TGG | 0.671474 | 8.2:+29049720 | MS.gene017666:CDS |
GAAAACGTAGGGCTACAAGC+CGG | 0.674003 | 8.2:-29049827 | None:intergenic |
CCGCGGCGGTGTAGTCATTG+TGG | 0.682078 | 8.2:+29049698 | MS.gene017666:CDS |
GGAAAGTTATTGAGATGCGG+CGG | 0.689583 | 8.2:+29049876 | MS.gene017666:CDS |
GTGGCTTTGAACATTCCTCG+AGG | 0.689945 | 8.2:-29049622 | None:intergenic |
ACTTTCTTCCTCAAACCTCG+AGG | 0.695600 | 8.2:+29049607 | MS.gene017666:CDS |
AAACATGGTGTTGAAAACGT+GGG | 0.703723 | 8.2:-29049479 | None:intergenic |
CCACAATGACTACACCGCCG+CGG | 0.734673 | 8.2:-29049698 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTTTTA+AGG | + | chr8.2:29049306-29049325 | MS.gene017666:intron | 0.0% |
!!! | CTTTCTTTTTTTAATGTAAG+AGG | - | chr8.2:29049261-29049280 | None:intergenic | 20.0% |
!! | AACATTCACAATTTTCATGT+AGG | + | chr8.2:29049346-29049365 | MS.gene017666:intron | 25.0% |
!!! | TGAAATTTCGTTTTGGTTTT+GGG | - | chr8.2:29049167-29049186 | None:intergenic | 25.0% |
AAAACACTTTGTAATGCTTG+TGG | + | chr8.2:29049764-29049783 | MS.gene017666:CDS | 30.0% | |
AAACACTTTGTAATGCTTGT+GGG | + | chr8.2:29049765-29049784 | MS.gene017666:CDS | 30.0% | |
AAATCTTCTAACAACGTTTG+TGG | - | chr8.2:29048992-29049011 | None:intergenic | 30.0% | |
AAGTAGGTAATGAAACAAAC+TGG | - | chr8.2:29049207-29049226 | None:intergenic | 30.0% | |
AATTGCATTCAAATCATCAC+CGG | + | chr8.2:29049855-29049874 | MS.gene017666:CDS | 30.0% | |
GATGAATTGGCTAATGAAAT+TGG | - | chr8.2:29049566-29049585 | None:intergenic | 30.0% | |
! | AAGTTGGAGATTTTCTGTTT+TGG | - | chr8.2:29049435-29049454 | None:intergenic | 30.0% |
! | AGTTGGAGATTTTCTGTTTT+GGG | - | chr8.2:29049434-29049453 | None:intergenic | 30.0% |
!! | CAAGCATTACAAAGTGTTTT+CGG | - | chr8.2:29049764-29049783 | None:intergenic | 30.0% |
!!! | GTGAAATTTCGTTTTGGTTT+TGG | - | chr8.2:29049168-29049187 | None:intergenic | 30.0% |
AACAAACTGGTTGTTGAGTA+TGG | - | chr8.2:29049194-29049213 | None:intergenic | 35.0% | |
AACACTTTGTAATGCTTGTG+GGG | + | chr8.2:29049766-29049785 | MS.gene017666:CDS | 35.0% | |
AAGAAGCAAGAGAACTAGAA+CGG | + | chr8.2:29049526-29049545 | MS.gene017666:CDS | 35.0% | |
ATGTTTCAAAACTCCTGTAC+CGG | + | chr8.2:29049496-29049515 | MS.gene017666:CDS | 35.0% | |
TCGACAAAGAAATCATCTAC+AGG | - | chr8.2:29049043-29049062 | None:intergenic | 35.0% | |
TTCATGTTCTTGTTCTTCGT+TGG | - | chr8.2:29049083-29049102 | None:intergenic | 35.0% | |
TTGTGGGGTTCGTTATAAAT+CGG | + | chr8.2:29049781-29049800 | MS.gene017666:CDS | 35.0% | |
! | AAACATGGTGTTGAAAACGT+GGG | - | chr8.2:29049482-29049501 | None:intergenic | 35.0% |
! | CATGAGCTTTTTGTTGAAGT+TGG | - | chr8.2:29049451-29049470 | None:intergenic | 35.0% |
! | TGGAGTGTGAAATTTCGTTT+TGG | - | chr8.2:29049174-29049193 | None:intergenic | 35.0% |
!! | AAGAAGCTGCTGATTTAGAA+TGG | + | chr8.2:29049372-29049391 | MS.gene017666:CDS | 35.0% |
!!! | TGTTTTGGGAAATTCTGAGA+AGG | - | chr8.2:29049420-29049439 | None:intergenic | 35.0% |
ACCGGAAAGTTATTGAGATG+CGG | + | chr8.2:29049873-29049892 | MS.gene017666:CDS | 40.0% | |
AGAAGCAAGAGAACTAGAAC+GGG | + | chr8.2:29049527-29049546 | MS.gene017666:CDS | 40.0% | |
GCAATTCACTCGAAAACGTA+GGG | - | chr8.2:29049841-29049860 | None:intergenic | 40.0% | |
GCTTGAGGTTGAAGATGAAT+TGG | - | chr8.2:29049579-29049598 | None:intergenic | 40.0% | |
GTTGTTACCGGAATATAGAC+CGG | + | chr8.2:29049808-29049827 | MS.gene017666:CDS | 40.0% | |
TGCAATTCACTCGAAAACGT+AGG | - | chr8.2:29049842-29049861 | None:intergenic | 40.0% | |
TGTGGGGTTCGTTATAAATC+GGG | + | chr8.2:29049782-29049801 | MS.gene017666:CDS | 40.0% | |
! | AAGAGGAATAGAGAGAGTAC+CGG | - | chr8.2:29049244-29049263 | None:intergenic | 40.0% |
! | AGAAAGTGTAGTTGAGCTTG+AGG | - | chr8.2:29049594-29049613 | None:intergenic | 40.0% |
! | GAAACATGGTGTTGAAAACG+TGG | - | chr8.2:29049483-29049502 | None:intergenic | 40.0% |
!!! | ATCCTCTTCGCTTTTTTCTC+CGG | - | chr8.2:29049647-29049666 | None:intergenic | 40.0% |
!!! | GGTACAGGAGTTTTGAAACA+TGG | - | chr8.2:29049497-29049516 | None:intergenic | 40.0% |
!!! | GGTTTTGGGTGTTGTTTTGA+GGG | - | chr8.2:29049153-29049172 | None:intergenic | 40.0% |
!!! | GTTTTGGGTGTTGTTTTGAG+GGG | - | chr8.2:29049152-29049171 | None:intergenic | 40.0% |
!!! | TGGTTTTGGGTGTTGTTTTG+AGG | - | chr8.2:29049154-29049173 | None:intergenic | 40.0% |
AAGAGGATGATTTCACCGGA+CGG | + | chr8.2:29049659-29049678 | MS.gene017666:CDS | 45.0% | |
ACTTTCTTCCTCAAACCTCG+AGG | + | chr8.2:29049607-29049626 | MS.gene017666:CDS | 45.0% | |
AGCGAAGAGGATGATTTCAC+CGG | + | chr8.2:29049655-29049674 | MS.gene017666:CDS | 45.0% | |
CATCTACAGGAGCTATGTCT+TGG | - | chr8.2:29049030-29049049 | None:intergenic | 45.0% | |
CTACAAGCCGGTCTATATTC+CGG | - | chr8.2:29049818-29049837 | None:intergenic | 45.0% | |
CTAGAACGGGTATTCGTGTA+TGG | + | chr8.2:29049540-29049559 | MS.gene017666:CDS | 45.0% | |
GCCGCATCTCAATAACTTTC+CGG | - | chr8.2:29049877-29049896 | None:intergenic | 45.0% | |
GGAAAGTTATTGAGATGCGG+CGG | + | chr8.2:29049876-29049895 | MS.gene017666:CDS | 45.0% | |
GGGTTCGTTATAAATCGGGT+CGG | + | chr8.2:29049786-29049805 | MS.gene017666:CDS | 45.0% | |
TAAATCGGGTCGGTTGTTAC+CGG | + | chr8.2:29049796-29049815 | MS.gene017666:CDS | 45.0% | |
TGAACATTCCTCGAGGTTTG+AGG | - | chr8.2:29049618-29049637 | None:intergenic | 45.0% | |
!! | CTCTTGCTTCTTGCTTTTGC+CGG | - | chr8.2:29049518-29049537 | None:intergenic | 45.0% |
!! | GAATAGAGAGAGTACCGGAA+CGG | - | chr8.2:29049239-29049258 | None:intergenic | 45.0% |
!! | GGTGTTGAAAACGTGGGTTT+TGG | - | chr8.2:29049476-29049495 | None:intergenic | 45.0% |
CACCGGAGAAAAAAGCGAAG+AGG | + | chr8.2:29049642-29049661 | MS.gene017666:CDS | 50.0% | |
CGAGGAATGTTCAAAGCCAC+CGG | + | chr8.2:29049625-29049644 | MS.gene017666:CDS | 50.0% | |
GAAAACGTAGGGCTACAAGC+CGG | - | chr8.2:29049830-29049849 | None:intergenic | 50.0% | |
GTGTGCAGAAGACTCCTCAA+TGG | + | chr8.2:29049720-29049739 | MS.gene017666:CDS | 50.0% | |
TACTTCCGAACTCACCGTTC+CGG | + | chr8.2:29049222-29049241 | MS.gene017666:CDS | 50.0% | |
TATTGAGATGCGGCGGAAGA+AGG | + | chr8.2:29049883-29049902 | MS.gene017666:CDS | 50.0% | |
!! | CTTCTTGCTTTTGCCGGTAC+AGG | - | chr8.2:29049512-29049531 | None:intergenic | 50.0% |
!! | GTGGCTTTGAACATTCCTCG+AGG | - | chr8.2:29049625-29049644 | None:intergenic | 50.0% |
!!! | CTCTTCGCTTTTTTCTCCGG+TGG | - | chr8.2:29049644-29049663 | None:intergenic | 50.0% |
!!! | GGGTGTTGTTTTGAGGGGTA+TGG | - | chr8.2:29049147-29049166 | None:intergenic | 50.0% |
AAGACTCCTCAATGGCGAGC+CGG | + | chr8.2:29049728-29049747 | MS.gene017666:CDS | 55.0% | |
CGGAAGAAGGAGGTTGTTCC+CGG | + | chr8.2:29049896-29049915 | MS.gene017666:CDS | 55.0% | |
GGAACGGTGAGTTCGGAAGT+AGG | - | chr8.2:29049223-29049242 | None:intergenic | 55.0% | |
!! | CAAAGTGTTTTCGGCCCACC+TGG | - | chr8.2:29049755-29049774 | None:intergenic | 55.0% |
!! | GAGTACCGGAACGGTGAGTT+CGG | - | chr8.2:29049230-29049249 | None:intergenic | 55.0% |
ACGCCTCTTGCTTCTCCGTC+CGG | - | chr8.2:29049677-29049696 | None:intergenic | 60.0% | |
CCACAATGACTACACCGCCG+CGG | - | chr8.2:29049701-29049720 | None:intergenic | 60.0% | |
TCACCGGACGGAGAAGCAAG+AGG | + | chr8.2:29049671-29049690 | MS.gene017666:CDS | 60.0% | |
TGAGATGCGGCGGAAGAAGG+AGG | + | chr8.2:29049886-29049905 | MS.gene017666:CDS | 60.0% | |
! | TGTTTTCGGCCCACCTGGTC+CGG | - | chr8.2:29049750-29049769 | None:intergenic | 60.0% |
AATGGCGAGCCGGACCAGGT+GGG | + | chr8.2:29049738-29049757 | MS.gene017666:CDS | 65.0% | |
CCGCGGCGGTGTAGTCATTG+TGG | + | chr8.2:29049698-29049717 | MS.gene017666:CDS | 65.0% | |
! | GAGAAGCAAGAGGCGTGCCG+CGG | + | chr8.2:29049681-29049700 | MS.gene017666:CDS | 65.0% |
CAATGGCGAGCCGGACCAGG+TGG | + | chr8.2:29049737-29049756 | MS.gene017666:CDS | 70.0% | |
CCTCAATGGCGAGCCGGACC+AGG | + | chr8.2:29049734-29049753 | MS.gene017666:CDS | 70.0% | |
! | AAGCAAGAGGCGTGCCGCGG+CGG | + | chr8.2:29049684-29049703 | MS.gene017666:CDS | 70.0% |
! | CCTGGTCCGGCTCGCCATTG+AGG | - | chr8.2:29049737-29049756 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 29048920 | 29049925 | 29048920 | ID=MS.gene017666 |
chr8.2 | mRNA | 29048920 | 29049925 | 29048920 | ID=MS.gene017666.t1;Parent=MS.gene017666 |
chr8.2 | exon | 29048920 | 29049243 | 29048920 | ID=MS.gene017666.t1.exon1;Parent=MS.gene017666.t1 |
chr8.2 | CDS | 29048920 | 29049243 | 29048920 | ID=cds.MS.gene017666.t1;Parent=MS.gene017666.t1 |
chr8.2 | exon | 29049368 | 29049925 | 29049368 | ID=MS.gene017666.t1.exon2;Parent=MS.gene017666.t1 |
chr8.2 | CDS | 29049368 | 29049925 | 29049368 | ID=cds.MS.gene017666.t1;Parent=MS.gene017666.t1 |
Gene Sequence |
Protein sequence |