AlfalfaGEDB | MS.gene017671

M. sativa cultivar XinJiangDaYe / MS.gene017671

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017671.t1	RHN47671.1	87.9	280	27	4	12	287	1	277	1.20E-127	466.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017671.t1	Q39262	37.1	105	48	2	78	182	59	145	3.1e-07	57.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017671.t1	A0A396H587	87.9	280	27	4	12	287	1	277	8.6e-128	466.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene017671.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017671.t1	MTR_3g012010	28.767	219	136	7	78	287	98	305	1.17e-14	73.2
MS.gene017671.t1	MTR_2g067740	40.816	98	51	4	78	168	59	156	5.13e-14	70.1
MS.gene017671.t1	MTR_8g466760	28.814	236	106	12	78	287	98	297	1.69e-13	69.7
MS.gene017671.t1	MTR_3g009410	27.074	229	127	7	78	287	98	305	5.90e-12	65.5
MS.gene017671.t1	MTR_7g026977	44.286	70	29	2	78	137	148	217	7.83e-12	65.5
MS.gene017671.t1	MTR_5g008280	40.449	89	35	3	77	157	45	123	8.69e-12	65.5
MS.gene017671.t1	MTR_3g011990	27.660	235	109	8	78	287	98	296	1.38e-11	64.3
MS.gene017671.t1	MTR_1g033340	41.509	106	46	6	11	110	34	129	3.15e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017671.t1	AT5G25160	40.000	105	45	3	78	182	59	145	3.55e-11	62.4

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Find 98 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCAAGCGCAAAATGA+TGG	0.477017	7.2:+19837376	MS.gene017671:CDS
AAATCCCACTTCCAAACCCT+TGG	0.521354	7.2:+19837505	MS.gene017671:CDS
AAATGAGGCTAATCCCAATG+AGG	0.702908	7.2:+19838174	MS.gene017671:CDS
AAATTATTCATCCCAAATTG+TGG	0.569543	7.2:-19837971	None:intergenic
AAGACATCACCACCAACCTC+TGG	0.499816	7.2:+19837437	MS.gene017671:CDS
AAGATGCCTCAGAAATTGGA+GGG	0.602431	7.2:-19838081	None:intergenic
AAGGCAAGGAATTGTTCACA+TGG	0.612872	7.2:-19837841	None:intergenic
AAGTTCAGTTCCTCCTCATT+GGG	0.363891	7.2:-19838187	None:intergenic
AATATTAGATCGATACCTTA+GGG	0.503430	7.2:-19837729	None:intergenic
AATGGAAGAACAAAGGAGAG+AGG	0.557192	7.2:+19837691	MS.gene017671:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGAAAATTGATAAGGGTA+TGG	-	chr7.2:19837758-19837777	None:intergenic	30.0%
GAATATTAGATCGATACCTT+AGG	-	chr7.2:19837733-19837752	None:intergenic	30.0%
GAGAGCTTGAAAATTGATAA+GGG	-	chr7.2:19837763-19837782	None:intergenic	30.0%
AGATGAAGATGACAGAAATG+AGG	+	chr7.2:19838159-19838178	MS.gene017671:CDS	35.0%
ATGAATAATTTATGGGGTGG+AGG	+	chr7.2:19837983-19838002	MS.gene017671:CDS	35.0%
CTGTCATCTTCATCTTCAAT+AGG	-	chr7.2:19838154-19838173	None:intergenic	35.0%
GGAGAGCTTGAAAATTGATA+AGG	-	chr7.2:19837764-19837783	None:intergenic	35.0%
TACGGAAATATGAATACCCT+TGG	-	chr7.2:19837793-19837812	None:intergenic	35.0%
TCTTCAATAGGATCATGAGA+AGG	-	chr7.2:19838142-19838161	None:intergenic	35.0%
TGAGCGTGTCTTCAAAAAAA+TGG	+	chr7.2:19837673-19837692	MS.gene017671:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	19837362	19838225	19837362	ID=MS.gene017671
chr7.2	mRNA	19837362	19838225	19837362	ID=MS.gene017671.t1;Parent=MS.gene017671
chr7.2	exon	19837362	19838225	19837362	ID=MS.gene017671.t1.exon1;Parent=MS.gene017671.t1
chr7.2	CDS	19837362	19838225	19837362	ID=cds.MS.gene017671.t1;Parent=MS.gene017671.t1

Gene Sequence

>MS.gene017671

ATGGCTGAGGACAAAAACCTCAAGCGCAAAATGATGGAGGATTCGGAGCAAGAGTCGAAATCGGAGAAGGAGCCAAAGACATCACCACCAACCTCTGGATCGGATGCTGGCGATTTCTTGACCTTGAGGCTTGGCGGTGGCACAAATCCCACTTCCAAACCCTTGGAGAATGGTGAGCATTCAGGTTCATCTCAAACTGCTAATGTTGAACCTCCACCTGTGCCGCAAGTGAAGGAATTCTCTTGTACTTATTGTGACAAGAAATTCCCCACTTCTCAAGCGCTTGGAGGACACCAAAACGCTCATAAGCGTGAGCGTGTCTTCAAAAAAATGGAAGAACAAAGGAGAGAGGATGTGATCGATTCAGCCCTAAGGTATCGATCTAATATTCTTCCATACCCTTATCAATTTTCAAGCTCTCCACACTACCAAGGGTATTCATATTTCCGTAGTGCTAGCCTGTCCAACCCAATTGGTTCCCATGTGAACAATTCCTTGCCTTCTTGGCTTGGTGGTTCATCTTCTGGTGGCTATGGAGGGATGTATATGCCAAATACACCTCCTGCGTCACGATTTGTGATGCCATTGTCAAATTCATCCCTTGCAACACCACAATTTGGGATGAATAATTTATGGGGTGGAGGTCAAAATGCTGCATTACCAACTCCACAGAGATCAAACACTGTGGGTTTGGCACTTTTAGCTCAAGCTAATCAAACCCCTCCAATTTCTGAGGCATCTTCTGAGGCTGTAGAAAGAAATTTCATTGATCAAATTCCTTCTCATGATCCTATTGAAGATGAAGATGACAGAAATGAGGCTAATCCCAATGAGGAGGAACTGAACTTGGAACTCACCCTTTAA

Protein sequence

>MS.gene017671.t1

MAEDKNLKRKMMEDSEQESKSEKEPKTSPPTSGSDAGDFLTLRLGGGTNPTSKPLENGEHSGSSQTANVEPPPVPQVKEFSCTYCDKKFPTSQALGGHQNAHKRERVFKKMEEQRREDVIDSALRYRSNILPYPYQFSSSPHYQGYSYFRSASLSNPIGSHVNNSLPSWLGGSSSGGYGGMYMPNTPPASRFVMPLSNSSLATPQFGMNNLWGGGQNAALPTPQRSNTVGLALLAQANQTPPISEASSEAVERNFIDQIPSHDPIEDEDDRNEANPNEEELNLELTL