Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017696.t1 | XP_003624928.1 | 92.6 | 447 | 32 | 1 | 15 | 460 | 1 | 447 | 6.00E-222 | 780 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017696.t1 | Q9FHK9 | 46.4 | 463 | 196 | 10 | 20 | 460 | 4 | 436 | 5.7e-88 | 326.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017696.t1 | G7L5V2 | 92.6 | 447 | 32 | 1 | 15 | 460 | 1 | 447 | 4.3e-222 | 780.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017696.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017696.t1 | MTR_7g089140 | 96.644 | 447 | 14 | 1 | 15 | 460 | 1 | 447 | 0.0 | 889 |
| MS.gene017696.t1 | MTR_7g089140 | 96.622 | 444 | 14 | 1 | 18 | 460 | 1 | 444 | 0.0 | 882 |
| MS.gene017696.t1 | MTR_7g089140 | 97.101 | 276 | 8 | 0 | 15 | 290 | 1 | 276 | 0.0 | 555 |
| MS.gene017696.t1 | MTR_7g089140 | 97.070 | 273 | 8 | 0 | 18 | 290 | 1 | 273 | 0.0 | 548 |
| MS.gene017696.t1 | MTR_3g095380 | 33.175 | 211 | 120 | 6 | 23 | 225 | 3 | 200 | 4.06e-23 | 99.8 |
| MS.gene017696.t1 | MTR_3g095380 | 33.175 | 211 | 120 | 6 | 23 | 225 | 3 | 200 | 7.97e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017696.t1 | AT5G05140 | 46.868 | 463 | 194 | 11 | 20 | 460 | 4 | 436 | 3.84e-120 | 358 |
| MS.gene017696.t1 | AT3G10820 | 41.781 | 438 | 207 | 10 | 15 | 450 | 1 | 392 | 6.33e-89 | 276 |
| MS.gene017696.t1 | AT3G10820 | 41.781 | 438 | 207 | 10 | 15 | 450 | 1 | 392 | 5.07e-86 | 275 |
| MS.gene017696.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 23 | 225 | 3 | 201 | 6.67e-22 | 97.1 |
| MS.gene017696.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 23 | 225 | 3 | 201 | 6.67e-22 | 97.1 |
| MS.gene017696.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 23 | 225 | 3 | 201 | 6.67e-22 | 97.1 |
| MS.gene017696.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 23 | 225 | 3 | 201 | 6.67e-22 | 97.1 |
| MS.gene017696.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 23 | 225 | 3 | 201 | 2.19e-21 | 95.5 |
Find 114 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGCTGTAATTGCTAAT+AGG | 0.172892 | 7.1:-17295559 | None:intergenic |
| CCATTGCCGATTGTGATTTC+CGG | 0.189148 | 7.1:-17297742 | None:intergenic |
| TTCAACAACAGATGGATTTC+TGG | 0.196234 | 7.1:-17296688 | None:intergenic |
| TCACTTGGGTCATTGAAAAT+TGG | 0.233379 | 7.1:-17295120 | None:intergenic |
| AATTGGTTTGATTCTTCTTC+AGG | 0.261010 | 7.1:-17295103 | None:intergenic |
| TGGGCATTGAGAGGCCTCTT+AGG | 0.273392 | 7.1:-17297336 | None:intergenic |
| CGCTGAATGTTTGAGTTTAG+TGG | 0.274638 | 7.1:-17297261 | None:intergenic |
| CATTGCCGATTGTGATTTCC+GGG | 0.275321 | 7.1:-17297741 | None:intergenic |
| GCCGAAGATGCCTCTGAAAA+TGG | 0.300933 | 7.1:+17297299 | MS.gene017696:CDS |
| CTCTTGAAGTCTTCGCTTAG+TGG | 0.327399 | 7.1:-17297483 | None:intergenic |
| CCTATTAGCAATTACAGCTT+TGG | 0.340233 | 7.1:+17295559 | MS.gene017696:CDS |
| CAAAGCTGTAATTGCTAATA+GGG | 0.344245 | 7.1:-17295558 | None:intergenic |
| TCAGCCGCCATCGGTTTATT+AGG | 0.348688 | 7.1:-17297222 | None:intergenic |
| CTCCTAGACTTAAACTCCTT+TGG | 0.357491 | 7.1:-17295346 | None:intergenic |
| GCTTTCTTTGTTGCCCCAAC+TGG | 0.358676 | 7.1:+17296762 | MS.gene017696:CDS |
| AGTTATCAACAAGCTGAAAA+TGG | 0.359783 | 7.1:+17297506 | MS.gene017696:CDS |
| TTGTATTGTCCTTTGCCTCT+TGG | 0.365164 | 7.1:-17297658 | None:intergenic |
| AGGACTCCCGTCACCTCCTT+TGG | 0.378418 | 7.1:+17296731 | MS.gene017696:CDS |
| TTACTTTCGTTCATCGAATT+CGG | 0.381995 | 7.1:+17295273 | MS.gene017696:CDS |
| AATTTGCAGTCAACTGAGAT+TGG | 0.383050 | 7.1:+17296063 | MS.gene017696:intron |
| AAACCGATGGCGGCTGATAC+TGG | 0.392097 | 7.1:+17297228 | MS.gene017696:CDS |
| CGTTGGACAGACCCTTGCTT+TGG | 0.393563 | 7.1:-17297702 | None:intergenic |
| TGTTATGCTGAATCGTTGTA+AGG | 0.399819 | 7.1:+17295396 | MS.gene017696:CDS |
| GTGCTGACTCTTGTTGTCCT+TGG | 0.405815 | 7.1:-17297172 | None:intergenic |
| TTGTCACGGTTCTTGTTGAA+TGG | 0.419455 | 7.1:-17297075 | None:intergenic |
| GATTGCAGTAGGGAAGAAAA+TGG | 0.423504 | 7.1:+17295520 | MS.gene017696:CDS |
| CGGAAATCACAATCGGCAAT+GGG | 0.431117 | 7.1:+17297743 | MS.gene017696:CDS |
| AGAGTTCAATTGTACCAGTT+GGG | 0.432169 | 7.1:-17296776 | None:intergenic |
| TTGGGATTGAAGATGAAGTC+AGG | 0.434760 | 7.1:+17295229 | MS.gene017696:intron |
| AGCTCTTGGCACTCAAACTA+AGG | 0.440911 | 7.1:+17297110 | MS.gene017696:CDS |
| GTCCAAGTGTTCAGATGATT+CGG | 0.441028 | 7.1:+17297448 | MS.gene017696:CDS |
| CCGTCACCTCCTTTGGATGA+AGG | 0.458747 | 7.1:+17296738 | MS.gene017696:CDS |
| CTGTCTTTCTTCCGTTGTCA+CGG | 0.459719 | 7.1:-17297089 | None:intergenic |
| TGAGAGTTCGTGCTAGTTGA+CGG | 0.465786 | 7.1:-17296128 | None:intergenic |
| CGTCACCTCCTTTGGATGAA+GGG | 0.466548 | 7.1:+17296739 | MS.gene017696:CDS |
| ATGTTTGTAGCTTCAGAAGA+AGG | 0.472561 | 7.1:+17296654 | MS.gene017696:intron |
| TCATCACCATTATCATCATC+AGG | 0.473283 | 7.1:-17295445 | None:intergenic |
| GTTTGAAATGTGTATTCCGT+TGG | 0.475671 | 7.1:-17297719 | None:intergenic |
| GGGCATTGAGAGGCCTCTTA+GGG | 0.490032 | 7.1:-17297335 | None:intergenic |
| GAGTTTAAGTCTAGGAGAGA+TGG | 0.491402 | 7.1:+17295352 | MS.gene017696:CDS |
| AACGGAAGAAAGACAGCTCT+TGG | 0.493030 | 7.1:+17297096 | MS.gene017696:CDS |
| ACAGATGGATTTCTGGAATC+CGG | 0.496893 | 7.1:-17296681 | None:intergenic |
| GCAAAGGACAATACAAGTAA+TGG | 0.500794 | 7.1:+17297665 | MS.gene017696:CDS |
| CCGGAAATCACAATCGGCAA+TGG | 0.503234 | 7.1:+17297742 | MS.gene017696:CDS |
| GAAAATGAAGAAGAGGAAGA+AGG | 0.503793 | 7.1:+17296708 | MS.gene017696:CDS |
| CAAGAGAAGTTCTGTTAGAG+AGG | 0.509666 | 7.1:+17295474 | MS.gene017696:CDS |
| AAGATTATACCTCATCTTCA+CGG | 0.513302 | 7.1:-17295666 | None:intergenic |
| TGCTGCTTCTGATTGTCCAA+AGG | 0.514908 | 7.1:+17295330 | MS.gene017696:CDS |
| GCTGGTCAATGCGTGGGTGA+AGG | 0.515961 | 7.1:+17296504 | MS.gene017696:CDS |
| AGAGCAAGGTGGATTGCAGT+AGG | 0.520399 | 7.1:+17295509 | MS.gene017696:CDS |
| GCAATCACAACTTGCTGCTG+AGG | 0.525782 | 7.1:+17295615 | MS.gene017696:CDS |
| CACAATCGGCAATGGGGCAA+CGG | 0.528995 | 7.1:+17297750 | MS.gene017696:CDS |
| CTTGTTGTCCTTGGCAGTGA+CGG | 0.530853 | 7.1:-17297163 | None:intergenic |
| AGCCGAATCATCTGAACACT+TGG | 0.534167 | 7.1:-17297450 | None:intergenic |
| ATAAATGATCTTCCAAAGCA+AGG | 0.538473 | 7.1:+17297690 | MS.gene017696:CDS |
| ACATCTTGCTGGGCATTGAG+AGG | 0.541123 | 7.1:-17297345 | None:intergenic |
| GTCACCTCCTTTGGATGAAG+GGG | 0.541178 | 7.1:+17296740 | MS.gene017696:CDS |
| GTGAATCATCTAAGAAAGCA+TGG | 0.544384 | 7.1:+17296093 | MS.gene017696:CDS |
| GGGTGCTAGCAAAGAGAGCA+AGG | 0.546467 | 7.1:+17295495 | MS.gene017696:CDS |
| TAATTGCAGCCAAGAGGCAA+AGG | 0.551496 | 7.1:+17297649 | MS.gene017696:intron |
| TCAAACCCGGAAATCACAAT+CGG | 0.553682 | 7.1:+17297736 | MS.gene017696:CDS |
| TGTAAAGTTCTTCGATGGCA+TGG | 0.555348 | 7.1:+17296908 | MS.gene017696:intron |
| TGTTGTTGAAAATGAAGAAG+AGG | 0.557042 | 7.1:+17296701 | MS.gene017696:CDS |
| CATGTTGCTACAGTCTGACT+CGG | 0.562250 | 7.1:+17295882 | MS.gene017696:intron |
| ACGGCTGTTTCATTAGATGC+CGG | 0.562358 | 7.1:-17297144 | None:intergenic |
| TAAATGATCTTCCAAAGCAA+GGG | 0.564834 | 7.1:+17297691 | MS.gene017696:CDS |
| GAGAGTTCAATTGTACCAGT+TGG | 0.566913 | 7.1:-17296777 | None:intergenic |
| CCTTCATCCAAAGGAGGTGA+CGG | 0.567401 | 7.1:-17296738 | None:intergenic |
| CGGAATACACATTTCAAACC+CGG | 0.569195 | 7.1:+17297723 | MS.gene017696:CDS |
| TTCGATGGCATGGATGATGA+TGG | 0.571056 | 7.1:+17296918 | MS.gene017696:CDS |
| GAGTTCAATTGTACCAGTTG+GGG | 0.574661 | 7.1:-17296775 | None:intergenic |
| TAGGGAAGAAAATGGAGTGA+TGG | 0.575118 | 7.1:+17295528 | MS.gene017696:CDS |
| CTTCATCCAAAGGAGGTGAC+GGG | 0.575720 | 7.1:-17296737 | None:intergenic |
| TGGTACAATTGAACTCTCAC+AGG | 0.578719 | 7.1:+17296782 | MS.gene017696:CDS |
| GTTATGCTGAATCGTTGTAA+GGG | 0.581949 | 7.1:+17295397 | MS.gene017696:CDS |
| GAGCAAGGTGGATTGCAGTA+GGG | 0.582197 | 7.1:+17295510 | MS.gene017696:CDS |
| AGGCATCTTCGGCTCCACAT+TGG | 0.582725 | 7.1:-17297289 | None:intergenic |
| AAAACAGTACTGTCCCTAAG+AGG | 0.584288 | 7.1:+17297322 | MS.gene017696:CDS |
| AAGAAAGCCCCTTCATCCAA+AGG | 0.586587 | 7.1:-17296747 | None:intergenic |
| TTCTAGTGGATGGAAAGAGC+TGG | 0.587363 | 7.1:+17296486 | MS.gene017696:intron |
| TCAACAACCACACCTGTCGC+AGG | 0.591937 | 7.1:+17296529 | MS.gene017696:CDS |
| CAAAGCAAGGGTCTGTCCAA+CGG | 0.592243 | 7.1:+17297703 | MS.gene017696:CDS |
| TGGGATTGAAGATGAAGTCA+GGG | 0.594781 | 7.1:+17295230 | MS.gene017696:intron |
| TCTAAGAAAGCATGGATCGA+AGG | 0.595986 | 7.1:+17296101 | MS.gene017696:CDS |
| AATGAAGAAGAGGAAGAAGG+AGG | 0.597918 | 7.1:+17296711 | MS.gene017696:CDS |
| AAGAGAAGTTCTGTTAGAGA+GGG | 0.600208 | 7.1:+17295475 | MS.gene017696:CDS |
| ACTCTCTGTCGATCTTCTGA+AGG | 0.600474 | 7.1:+17295942 | MS.gene017696:CDS |
| GACGATGTAAAGTTCTTCGA+TGG | 0.605011 | 7.1:+17296903 | MS.gene017696:intron |
| AATTATTAATTGCAGCCAAG+AGG | 0.608124 | 7.1:+17297643 | MS.gene017696:intron |
| CGACCAGTATCAGCCGCCAT+CGG | 0.609021 | 7.1:-17297231 | None:intergenic |
| TGAAACAGCCGTCACTGCCA+AGG | 0.610149 | 7.1:+17297155 | MS.gene017696:CDS |
| GCAGTCAACTGAGATTGGAA+AGG | 0.610845 | 7.1:+17296068 | MS.gene017696:intron |
| TGCTGTTTGAGTCTCTGAGG+AGG | 0.611179 | 7.1:+17295905 | MS.gene017696:CDS |
| AATTCGACCTGCGACAGGTG+TGG | 0.612456 | 7.1:-17296536 | None:intergenic |
| CATTCAGCGAAAAGCCAATG+TGG | 0.612860 | 7.1:+17297275 | MS.gene017696:CDS |
| TCTCAATAACCGTGAAGATG+AGG | 0.613333 | 7.1:+17295657 | MS.gene017696:CDS |
| CAGGGTCACTTGATCAGTGG+AGG | 0.617583 | 7.1:+17295248 | MS.gene017696:CDS |
| TTCAACAAGAACCGTGACAA+CGG | 0.624350 | 7.1:+17297078 | MS.gene017696:CDS |
| GGAAAGAGCTGGTCAATGCG+TGG | 0.625905 | 7.1:+17296497 | MS.gene017696:CDS |
| GTCCAAAGGAGTTTAAGTCT+AGG | 0.627009 | 7.1:+17295344 | MS.gene017696:CDS |
| TCTGTGCCTGATGATGATAA+TGG | 0.629006 | 7.1:+17295439 | MS.gene017696:CDS |
| CGGTGCTGTTTGAGTCTCTG+AGG | 0.632670 | 7.1:+17295902 | MS.gene017696:CDS |
| GAAAGAGCTGGTCAATGCGT+GGG | 0.636719 | 7.1:+17296498 | MS.gene017696:CDS |
| TCGTTGTAAGGGGTGTGAGA+AGG | 0.640457 | 7.1:+17295408 | MS.gene017696:CDS |
| AAGCAGCAACAACAATTGCA+TGG | 0.641026 | 7.1:-17295315 | None:intergenic |
| AGTCAGGGTCACTTGATCAG+TGG | 0.646882 | 7.1:+17295245 | MS.gene017696:CDS |
| AGCTTCAGAAGAAGGCACAC+CGG | 0.647483 | 7.1:+17296662 | MS.gene017696:intron |
| GGTGAGGCCTAATAAACCGA+TGG | 0.659654 | 7.1:+17297215 | MS.gene017696:CDS |
| TTATGCTGAATCGTTGTAAG+GGG | 0.662020 | 7.1:+17295398 | MS.gene017696:CDS |
| GAGGCCTAATAAACCGATGG+CGG | 0.667726 | 7.1:+17297218 | MS.gene017696:CDS |
| TTGGCACTCAAACTAAGGAG+AGG | 0.668123 | 7.1:+17297115 | MS.gene017696:CDS |
| AAAGCCCCTTCATCCAAAGG+AGG | 0.683333 | 7.1:-17296744 | None:intergenic |
| GGAAATCACAATCGGCAATG+GGG | 0.692012 | 7.1:+17297744 | MS.gene017696:CDS |
| TGCTAGCAAAGAGAGCAAGG+TGG | 0.724881 | 7.1:+17295498 | MS.gene017696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTTATTATAACATATT+TGG | + | chr7.1:17295171-17295190 | MS.gene017696:intron | 10.0% |
| !! | ATTACAAAATTAATTCATGT+TGG | + | chr7.1:17296617-17296636 | MS.gene017696:intron | 15.0% |
| !!! | AGTATGATTTATTTTTTTCA+TGG | + | chr7.1:17296154-17296173 | MS.gene017696:intron | 15.0% |
| !!! | TTAAATTGATGATTGTAAAT+GGG | + | chr7.1:17297021-17297040 | MS.gene017696:intron | 15.0% |
| !! | AAAATGGTTCAAATTAACTA+AGG | - | chr7.1:17296289-17296308 | None:intergenic | 20.0% |
| !! | GATATGAATCAAAACAATAA+CGG | - | chr7.1:17296377-17296396 | None:intergenic | 20.0% |
| !! | GTATATATGAAACTGAATTT+GGG | + | chr7.1:17296855-17296874 | MS.gene017696:intron | 20.0% |
| !! | TGTATATATGAAACTGAATT+TGG | + | chr7.1:17296854-17296873 | MS.gene017696:intron | 20.0% |
| !! | TTCTCAAACTTATATTTCAA+AGG | + | chr7.1:17296830-17296849 | MS.gene017696:intron | 20.0% |
| !! | TTGAAATATAAGTTTGAGAA+TGG | - | chr7.1:17296830-17296849 | None:intergenic | 20.0% |
| !!! | ATTGATTCTTTTGTTGTTTT+GGG | + | chr7.1:17295211-17295230 | MS.gene017696:intron | 20.0% |
| !!! | CTTAAATTGATGATTGTAAA+TGG | + | chr7.1:17297020-17297039 | MS.gene017696:intron | 20.0% |
| !!! | TAAATTGATGATTGTAAATG+GGG | + | chr7.1:17297022-17297041 | MS.gene017696:intron | 20.0% |
| !!! | TAATCTTTTCTAATTTCTAG+TGG | + | chr7.1:17296472-17296491 | MS.gene017696:intron | 20.0% |
| !!! | TGGTTTATTTTATACAATCA+TGG | + | chr7.1:17296202-17296221 | MS.gene017696:intron | 20.0% |
| !!! | TGTTTTGATATGGTTTTTTT+TGG | + | chr7.1:17295787-17295806 | MS.gene017696:intron | 20.0% |
| ! | ATAAGTTTGAGAATGGAAAA+AGG | - | chr7.1:17296823-17296842 | None:intergenic | 25.0% |
| ! | TCACTATCATTACATAATCA+TGG | + | chr7.1:17296249-17296268 | MS.gene017696:intron | 25.0% |
| !! | AACAATCTTAAAAAAAGCAC+TGG | - | chr7.1:17296022-17296041 | None:intergenic | 25.0% |
| !! | ATCTGTTGAATGTTTTCAAT+TGG | + | chr7.1:17296419-17296438 | MS.gene017696:intron | 25.0% |
| !! | ATGTTTGATGTGATGATTTT+TGG | + | chr7.1:17295756-17295775 | MS.gene017696:intron | 25.0% |
| !! | GCATTAATTTTGTAAGTTTG+TGG | + | chr7.1:17297393-17297412 | MS.gene017696:intron | 25.0% |
| !! | TTTTATCTACCTTATTAGTG+TGG | + | chr7.1:17296559-17296578 | MS.gene017696:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGAATCG+TGG | + | chr7.1:17295145-17295164 | MS.gene017696:intron | 25.0% |
| !!! | AAAATTGAGTTTTGAATCGT+GGG | + | chr7.1:17295146-17295165 | MS.gene017696:intron | 25.0% |
| !!! | AAACTCAATTTTTTCTCACT+TGG | - | chr7.1:17295138-17295157 | None:intergenic | 25.0% |
| !!! | AACTCAATTTTTTCTCACTT+GGG | - | chr7.1:17295137-17295156 | None:intergenic | 25.0% |
| !!! | AGTTTAGAATTTGAGTTGTT+CGG | - | chr7.1:17296448-17296467 | None:intergenic | 25.0% |
| !!! | CTTCTGAAACACAAAAATTA+AGG | - | chr7.1:17297429-17297448 | None:intergenic | 25.0% |
| !!! | GATTGATTCTTTTGTTGTTT+TGG | + | chr7.1:17295210-17295229 | MS.gene017696:intron | 25.0% |
| !!! | TTGATATGGTTTTTTTTGGA+TGG | + | chr7.1:17295791-17295810 | MS.gene017696:intron | 25.0% |
| AAGATTATACCTCATCTTCA+CGG | - | chr7.1:17295669-17295688 | None:intergenic | 30.0% | |
| AATCTTTCTTTATCGCTTTG+GGG | + | chr7.1:17295974-17295993 | MS.gene017696:intron | 30.0% | |
| AATTATTAATTGCAGCCAAG+AGG | + | chr7.1:17297643-17297662 | MS.gene017696:intron | 30.0% | |
| AGTTATCAACAAGCTGAAAA+TGG | + | chr7.1:17297506-17297525 | MS.gene017696:CDS | 30.0% | |
| ATAAATGATCTTCCAAAGCA+AGG | + | chr7.1:17297690-17297709 | MS.gene017696:CDS | 30.0% | |
| ATTGATGAGTACAATTATGC+TGG | + | chr7.1:17296583-17296602 | MS.gene017696:intron | 30.0% | |
| CAAAGCTGTAATTGCTAATA+GGG | - | chr7.1:17295561-17295580 | None:intergenic | 30.0% | |
| CACATGACTAACTAAGAAAA+TGG | - | chr7.1:17296305-17296324 | None:intergenic | 30.0% | |
| CATCAATGAGTTATGAATTG+AGG | - | chr7.1:17297611-17297630 | None:intergenic | 30.0% | |
| GAATCTTTCTTTATCGCTTT+GGG | + | chr7.1:17295973-17295992 | MS.gene017696:intron | 30.0% | |
| TAAATGATCTTCCAAAGCAA+GGG | + | chr7.1:17297691-17297710 | MS.gene017696:CDS | 30.0% | |
| TCATCAATACCACACTAATA+AGG | - | chr7.1:17296571-17296590 | None:intergenic | 30.0% | |
| TGAATCTTTCTTTATCGCTT+TGG | + | chr7.1:17295972-17295991 | MS.gene017696:intron | 30.0% | |
| TGTTGTTGAAAATGAAGAAG+AGG | + | chr7.1:17296701-17296720 | MS.gene017696:CDS | 30.0% | |
| TTACTTTCGTTCATCGAATT+CGG | + | chr7.1:17295273-17295292 | MS.gene017696:CDS | 30.0% | |
| TTCCTTGTGTTGTATATATC+TGG | + | chr7.1:17296881-17296900 | MS.gene017696:intron | 30.0% | |
| ! | AATCATCAATTTAAGACGAG+GGG | - | chr7.1:17297015-17297034 | None:intergenic | 30.0% |
| ! | ACAATCATCAATTTAAGACG+AGG | - | chr7.1:17297017-17297036 | None:intergenic | 30.0% |
| ! | CAATCATCAATTTAAGACGA+GGG | - | chr7.1:17297016-17297035 | None:intergenic | 30.0% |
| ! | TATTTTGCTTACATCTTGCT+GGG | - | chr7.1:17297358-17297377 | None:intergenic | 30.0% |
| ! | TCATTCACCTATCTAAAGTT+TGG | - | chr7.1:17296349-17296368 | None:intergenic | 30.0% |
| ! | TCTTCATTTTCAACAACAGA+TGG | - | chr7.1:17296699-17296718 | None:intergenic | 30.0% |
| !! | AATTGGTTTGATTCTTCTTC+AGG | - | chr7.1:17295106-17295125 | None:intergenic | 30.0% |
| !! | GCATTTTTGTTCTTGTTTGA+AGG | + | chr7.1:17295813-17295832 | MS.gene017696:intron | 30.0% |
| !! | TGATGTGATGATTTTTGGAA+AGG | + | chr7.1:17295761-17295780 | MS.gene017696:intron | 30.0% |
| !! | TTATTTTGCTTACATCTTGC+TGG | - | chr7.1:17297359-17297378 | None:intergenic | 30.0% |
| !!! | CTTTTCTAATTTCTAGTGGA+TGG | + | chr7.1:17296476-17296495 | MS.gene017696:intron | 30.0% |
| !!! | GGAAAGGATATGTTTTGATA+TGG | + | chr7.1:17295777-17295796 | MS.gene017696:intron | 30.0% |
| AAGAGAAGTTCTGTTAGAGA+GGG | + | chr7.1:17295475-17295494 | MS.gene017696:CDS | 35.0% | |
| AATTTGCAGTCAACTGAGAT+TGG | + | chr7.1:17296063-17296082 | MS.gene017696:intron | 35.0% | |
| AGAGTTCAATTGTACCAGTT+GGG | - | chr7.1:17296779-17296798 | None:intergenic | 35.0% | |
| ATCTTTCTTTATCGCTTTGG+GGG | + | chr7.1:17295975-17295994 | MS.gene017696:intron | 35.0% | |
| ATGTTTGTAGCTTCAGAAGA+AGG | + | chr7.1:17296654-17296673 | MS.gene017696:intron | 35.0% | |
| ATTGACGCCAAACTTTAGAT+AGG | + | chr7.1:17296339-17296358 | MS.gene017696:intron | 35.0% | |
| CCAAAGCTGTAATTGCTAAT+AGG | - | chr7.1:17295562-17295581 | None:intergenic | 35.0% | |
| CCTATTAGCAATTACAGCTT+TGG | + | chr7.1:17295559-17295578 | MS.gene017696:CDS | 35.0% | |
| CTTTAGATAGGTGAATGACT+TGG | + | chr7.1:17296351-17296370 | MS.gene017696:intron | 35.0% | |
| GAAAATGAAGAAGAGGAAGA+AGG | + | chr7.1:17296708-17296727 | MS.gene017696:CDS | 35.0% | |
| GCAAAGGACAATACAAGTAA+TGG | + | chr7.1:17297665-17297684 | MS.gene017696:CDS | 35.0% | |
| GTCCAGATATATACAACACA+AGG | - | chr7.1:17296886-17296905 | None:intergenic | 35.0% | |
| GTGAATCATCTAAGAAAGCA+TGG | + | chr7.1:17296093-17296112 | MS.gene017696:CDS | 35.0% | |
| GTTATGCTGAATCGTTGTAA+GGG | + | chr7.1:17295397-17295416 | MS.gene017696:CDS | 35.0% | |
| TCACTTGGGTCATTGAAAAT+TGG | - | chr7.1:17295123-17295142 | None:intergenic | 35.0% | |
| TCATCACCATTATCATCATC+AGG | - | chr7.1:17295448-17295467 | None:intergenic | 35.0% | |
| TGTTATGCTGAATCGTTGTA+AGG | + | chr7.1:17295396-17295415 | MS.gene017696:CDS | 35.0% | |
| TTATGCTGAATCGTTGTAAG+GGG | + | chr7.1:17295398-17295417 | MS.gene017696:CDS | 35.0% | |
| ! | AACTAAGGAGAGGAATTTTC+CGG | + | chr7.1:17297125-17297144 | MS.gene017696:CDS | 35.0% |
| ! | GTACTGTTTTCCATTTTCAG+AGG | - | chr7.1:17297312-17297331 | None:intergenic | 35.0% |
| ! | GTTTGAAATGTGTATTCCGT+TGG | - | chr7.1:17297722-17297741 | None:intergenic | 35.0% |
| ! | TTCAACAACAGATGGATTTC+TGG | - | chr7.1:17296691-17296710 | None:intergenic | 35.0% |
| AAAACAGTACTGTCCCTAAG+AGG | + | chr7.1:17297322-17297341 | MS.gene017696:CDS | 40.0% | |
| AAGCAGCAACAACAATTGCA+TGG | - | chr7.1:17295318-17295337 | None:intergenic | 40.0% | |
| AATGAAGAAGAGGAAGAAGG+AGG | + | chr7.1:17296711-17296730 | MS.gene017696:CDS | 40.0% | |
| CAAGAGAAGTTCTGTTAGAG+AGG | + | chr7.1:17295474-17295493 | MS.gene017696:CDS | 40.0% | |
| CGGAATACACATTTCAAACC+CGG | + | chr7.1:17297723-17297742 | MS.gene017696:CDS | 40.0% | |
| CTCCTAGACTTAAACTCCTT+TGG | - | chr7.1:17295349-17295368 | None:intergenic | 40.0% | |
| GACGATGTAAAGTTCTTCGA+TGG | + | chr7.1:17296903-17296922 | MS.gene017696:intron | 40.0% | |
| GAGAGTTCAATTGTACCAGT+TGG | - | chr7.1:17296780-17296799 | None:intergenic | 40.0% | |
| GAGTTCAATTGTACCAGTTG+GGG | - | chr7.1:17296778-17296797 | None:intergenic | 40.0% | |
| GAGTTTAAGTCTAGGAGAGA+TGG | + | chr7.1:17295352-17295371 | MS.gene017696:CDS | 40.0% | |
| GATTGCAGTAGGGAAGAAAA+TGG | + | chr7.1:17295520-17295539 | MS.gene017696:CDS | 40.0% | |
| GTCCAAAGGAGTTTAAGTCT+AGG | + | chr7.1:17295344-17295363 | MS.gene017696:CDS | 40.0% | |
| GTCCAAGTGTTCAGATGATT+CGG | + | chr7.1:17297448-17297467 | MS.gene017696:CDS | 40.0% | |
| TAAAAAATTCGACCTGCGAC+AGG | - | chr7.1:17296544-17296563 | None:intergenic | 40.0% | |
| TAGGGAAGAAAATGGAGTGA+TGG | + | chr7.1:17295528-17295547 | MS.gene017696:CDS | 40.0% | |
| TCAAACCCGGAAATCACAAT+CGG | + | chr7.1:17297736-17297755 | MS.gene017696:CDS | 40.0% | |
| TCAGCACATGAAGAAAAACG+AGG | + | chr7.1:17297188-17297207 | MS.gene017696:CDS | 40.0% | |
| TCTCAATAACCGTGAAGATG+AGG | + | chr7.1:17295657-17295676 | MS.gene017696:CDS | 40.0% | |
| TGGCGTCAATGTTAACATCA+TGG | - | chr7.1:17296329-17296348 | None:intergenic | 40.0% | |
| TGGGATTGAAGATGAAGTCA+GGG | + | chr7.1:17295230-17295249 | MS.gene017696:intron | 40.0% | |
| TGGTACAATTGAACTCTCAC+AGG | + | chr7.1:17296782-17296801 | MS.gene017696:CDS | 40.0% | |
| TGTAAAGTTCTTCGATGGCA+TGG | + | chr7.1:17296908-17296927 | MS.gene017696:intron | 40.0% | |
| TGTTTCTTGTCTGCGAATTG+TGG | + | chr7.1:17296182-17296201 | MS.gene017696:intron | 40.0% | |
| TTCAACAAGAACCGTGACAA+CGG | + | chr7.1:17297078-17297097 | MS.gene017696:CDS | 40.0% | |
| TTGGGATTGAAGATGAAGTC+AGG | + | chr7.1:17295229-17295248 | MS.gene017696:intron | 40.0% | |
| TTGTATTGTCCTTTGCCTCT+TGG | - | chr7.1:17297661-17297680 | None:intergenic | 40.0% | |
| TTGTCACGGTTCTTGTTGAA+TGG | - | chr7.1:17297078-17297097 | None:intergenic | 40.0% | |
| ! | CGCTGAATGTTTGAGTTTAG+TGG | - | chr7.1:17297264-17297283 | None:intergenic | 40.0% |
| ! | CTACCTAGCTTTCGTTGTTA+CGG | + | chr7.1:17296974-17296993 | MS.gene017696:intron | 40.0% |
| ! | TCTAAGAAAGCATGGATCGA+AGG | + | chr7.1:17296101-17296120 | MS.gene017696:CDS | 40.0% |
| ! | TCTGTGCCTGATGATGATAA+TGG | + | chr7.1:17295439-17295458 | MS.gene017696:CDS | 40.0% |
| !! | ACAGATGGATTTCTGGAATC+CGG | - | chr7.1:17296684-17296703 | None:intergenic | 40.0% |
| !!! | TCCATTTTCAGAGGCATCTT+CGG | - | chr7.1:17297303-17297322 | None:intergenic | 40.0% |
| AACGGAAGAAAGACAGCTCT+TGG | + | chr7.1:17297096-17297115 | MS.gene017696:CDS | 45.0% | |
| AAGAAAGCCCCTTCATCCAA+AGG | - | chr7.1:17296750-17296769 | None:intergenic | 45.0% | |
| ACTCTCTGTCGATCTTCTGA+AGG | + | chr7.1:17295942-17295961 | MS.gene017696:CDS | 45.0% | |
| AGCCGAATCATCTGAACACT+TGG | - | chr7.1:17297453-17297472 | None:intergenic | 45.0% | |
| AGCTCTTGGCACTCAAACTA+AGG | + | chr7.1:17297110-17297129 | MS.gene017696:CDS | 45.0% | |
| CATGAAGAAAAACGAGGCTG+TGG | + | chr7.1:17297194-17297213 | MS.gene017696:CDS | 45.0% | |
| CATGTTGCTACAGTCTGACT+CGG | + | chr7.1:17295882-17295901 | MS.gene017696:intron | 45.0% | |
| CATTCAGCGAAAAGCCAATG+TGG | + | chr7.1:17297275-17297294 | MS.gene017696:CDS | 45.0% | |
| CGGAAATCACAATCGGCAAT+GGG | + | chr7.1:17297743-17297762 | MS.gene017696:CDS | 45.0% | |
| CTCTTGAAGTCTTCGCTTAG+TGG | - | chr7.1:17297486-17297505 | None:intergenic | 45.0% | |
| CTGTCTTTCTTCCGTTGTCA+CGG | - | chr7.1:17297092-17297111 | None:intergenic | 45.0% | |
| GAACCGTAACAACGAAAGCT+AGG | - | chr7.1:17296980-17296999 | None:intergenic | 45.0% | |
| GCAGTCAACTGAGATTGGAA+AGG | + | chr7.1:17296068-17296087 | MS.gene017696:intron | 45.0% | |
| GGAAATCACAATCGGCAATG+GGG | + | chr7.1:17297744-17297763 | MS.gene017696:CDS | 45.0% | |
| TAATTGCAGCCAAGAGGCAA+AGG | + | chr7.1:17297649-17297668 | MS.gene017696:intron | 45.0% | |
| TGAGAGTTCGTGCTAGTTGA+CGG | - | chr7.1:17296131-17296150 | None:intergenic | 45.0% | |
| TTCGATGGCATGGATGATGA+TGG | + | chr7.1:17296918-17296937 | MS.gene017696:CDS | 45.0% | |
| TTGGCACTCAAACTAAGGAG+AGG | + | chr7.1:17297115-17297134 | MS.gene017696:CDS | 45.0% | |
| ! | ACGGCTGTTTCATTAGATGC+CGG | - | chr7.1:17297147-17297166 | None:intergenic | 45.0% |
| ! | CATTGCCGATTGTGATTTCC+GGG | - | chr7.1:17297744-17297763 | None:intergenic | 45.0% |
| ! | CCATTGCCGATTGTGATTTC+CGG | - | chr7.1:17297745-17297764 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGATTGTCCAA+AGG | + | chr7.1:17295330-17295349 | MS.gene017696:CDS | 45.0% |
| ! | TTCTAGTGGATGGAAAGAGC+TGG | + | chr7.1:17296486-17296505 | MS.gene017696:intron | 45.0% |
| !!! | AACTTGCTGCTGAGGTTTTG+AGG | + | chr7.1:17295623-17295642 | MS.gene017696:CDS | 45.0% |
| AAAGCCCCTTCATCCAAAGG+AGG | - | chr7.1:17296747-17296766 | None:intergenic | 50.0% | |
| AGAAAAACGAGGCTGTGGTG+AGG | + | chr7.1:17297199-17297218 | MS.gene017696:CDS | 50.0% | |
| AGTCAGGGTCACTTGATCAG+TGG | + | chr7.1:17295245-17295264 | MS.gene017696:CDS | 50.0% | |
| CAAAGCAAGGGTCTGTCCAA+CGG | + | chr7.1:17297703-17297722 | MS.gene017696:CDS | 50.0% | |
| CCGGAAATCACAATCGGCAA+TGG | + | chr7.1:17297742-17297761 | MS.gene017696:CDS | 50.0% | |
| CCTTCATCCAAAGGAGGTGA+CGG | - | chr7.1:17296741-17296760 | None:intergenic | 50.0% | |
| CGTCACCTCCTTTGGATGAA+GGG | + | chr7.1:17296739-17296758 | MS.gene017696:CDS | 50.0% | |
| CTTCATCCAAAGGAGGTGAC+GGG | - | chr7.1:17296740-17296759 | None:intergenic | 50.0% | |
| GAAAGAGCTGGTCAATGCGT+GGG | + | chr7.1:17296498-17296517 | MS.gene017696:CDS | 50.0% | |
| GAGGCCTAATAAACCGATGG+CGG | + | chr7.1:17297218-17297237 | MS.gene017696:CDS | 50.0% | |
| GCTTTCTTTGTTGCCCCAAC+TGG | + | chr7.1:17296762-17296781 | MS.gene017696:CDS | 50.0% | |
| GGTGAGGCCTAATAAACCGA+TGG | + | chr7.1:17297215-17297234 | MS.gene017696:CDS | 50.0% | |
| GTCACCTCCTTTGGATGAAG+GGG | + | chr7.1:17296740-17296759 | MS.gene017696:CDS | 50.0% | |
| TGCTAGCAAAGAGAGCAAGG+TGG | + | chr7.1:17295498-17295517 | MS.gene017696:CDS | 50.0% | |
| ! | AGCTTCAGAAGAAGGCACAC+CGG | + | chr7.1:17296662-17296681 | MS.gene017696:intron | 50.0% |
| ! | CTTGTTGTCCTTGGCAGTGA+CGG | - | chr7.1:17297166-17297185 | None:intergenic | 50.0% |
| ! | GCCGAAGATGCCTCTGAAAA+TGG | + | chr7.1:17297299-17297318 | MS.gene017696:CDS | 50.0% |
| ! | TCGTTGTAAGGGGTGTGAGA+AGG | + | chr7.1:17295408-17295427 | MS.gene017696:CDS | 50.0% |
| ! | TGCTGTTTGAGTCTCTGAGG+AGG | + | chr7.1:17295905-17295924 | MS.gene017696:CDS | 50.0% |
| !! | ACATCTTGCTGGGCATTGAG+AGG | - | chr7.1:17297348-17297367 | None:intergenic | 50.0% |
| !! | AGAGCAAGGTGGATTGCAGT+AGG | + | chr7.1:17295509-17295528 | MS.gene017696:CDS | 50.0% |
| !! | GAGCAAGGTGGATTGCAGTA+GGG | + | chr7.1:17295510-17295529 | MS.gene017696:CDS | 50.0% |
| !! | GCAATCACAACTTGCTGCTG+AGG | + | chr7.1:17295615-17295634 | MS.gene017696:CDS | 50.0% |
| !! | GTGCTGACTCTTGTTGTCCT+TGG | - | chr7.1:17297175-17297194 | None:intergenic | 50.0% |
| !! | TCAGCCGCCATCGGTTTATT+AGG | - | chr7.1:17297225-17297244 | None:intergenic | 50.0% |
| AATTCGACCTGCGACAGGTG+TGG | - | chr7.1:17296539-17296558 | None:intergenic | 55.0% | |
| AGGCATCTTCGGCTCCACAT+TGG | - | chr7.1:17297292-17297311 | None:intergenic | 55.0% | |
| ATGGGGCAACGGTCGAAGAT+AGG | + | chr7.1:17297761-17297780 | MS.gene017696:CDS | 55.0% | |
| CACAATCGGCAATGGGGCAA+CGG | + | chr7.1:17297750-17297769 | MS.gene017696:CDS | 55.0% | |
| CAGGGTCACTTGATCAGTGG+AGG | + | chr7.1:17295248-17295267 | MS.gene017696:CDS | 55.0% | |
| CCGTCACCTCCTTTGGATGA+AGG | + | chr7.1:17296738-17296757 | MS.gene017696:CDS | 55.0% | |
| CGTTGGACAGACCCTTGCTT+TGG | - | chr7.1:17297705-17297724 | None:intergenic | 55.0% | |
| GGAAAGAGCTGGTCAATGCG+TGG | + | chr7.1:17296497-17296516 | MS.gene017696:CDS | 55.0% | |
| GGGTGCTAGCAAAGAGAGCA+AGG | + | chr7.1:17295495-17295514 | MS.gene017696:CDS | 55.0% | |
| TCAACAACCACACCTGTCGC+AGG | + | chr7.1:17296529-17296548 | MS.gene017696:CDS | 55.0% | |
| TGAAACAGCCGTCACTGCCA+AGG | + | chr7.1:17297155-17297174 | MS.gene017696:CDS | 55.0% | |
| TGGGGCAACGGTCGAAGATA+GGG | + | chr7.1:17297762-17297781 | MS.gene017696:CDS | 55.0% | |
| ! | AAACCGATGGCGGCTGATAC+TGG | + | chr7.1:17297228-17297247 | MS.gene017696:CDS | 55.0% |
| !! | CGGTGCTGTTTGAGTCTCTG+AGG | + | chr7.1:17295902-17295921 | MS.gene017696:CDS | 55.0% |
| !! | GGGCATTGAGAGGCCTCTTA+GGG | - | chr7.1:17297338-17297357 | None:intergenic | 55.0% |
| !! | TGGGCATTGAGAGGCCTCTT+AGG | - | chr7.1:17297339-17297358 | None:intergenic | 55.0% |
| AGGACTCCCGTCACCTCCTT+TGG | + | chr7.1:17296731-17296750 | MS.gene017696:CDS | 60.0% | |
| CGACCAGTATCAGCCGCCAT+CGG | - | chr7.1:17297234-17297253 | None:intergenic | 60.0% | |
| GCTGGTCAATGCGTGGGTGA+AGG | + | chr7.1:17296504-17296523 | MS.gene017696:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17295088 | 17297782 | 17295088 | ID=MS.gene017696 |
| chr7.1 | mRNA | 17295088 | 17297782 | 17295088 | ID=MS.gene017696.t1;Parent=MS.gene017696 |
| chr7.1 | exon | 17295088 | 17295138 | 17295088 | ID=MS.gene017696.t1.exon1;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17295088 | 17295138 | 17295088 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17295241 | 17295678 | 17295241 | ID=MS.gene017696.t1.exon2;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17295241 | 17295678 | 17295241 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17295895 | 17295963 | 17295895 | ID=MS.gene017696.t1.exon3;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17295895 | 17295963 | 17295895 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17296072 | 17296154 | 17296072 | ID=MS.gene017696.t1.exon4;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17296072 | 17296154 | 17296072 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17296492 | 17296550 | 17296492 | ID=MS.gene017696.t1.exon5;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17296492 | 17296550 | 17296492 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17296664 | 17296803 | 17296664 | ID=MS.gene017696.t1.exon6;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17296664 | 17296803 | 17296664 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17296915 | 17296942 | 17296915 | ID=MS.gene017696.t1.exon7;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17296915 | 17296942 | 17296915 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17297058 | 17297365 | 17297058 | ID=MS.gene017696.t1.exon8;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17297058 | 17297365 | 17297058 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17297446 | 17297527 | 17297446 | ID=MS.gene017696.t1.exon9;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17297446 | 17297527 | 17297446 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| chr7.1 | exon | 17297658 | 17297782 | 17297658 | ID=MS.gene017696.t1.exon10;Parent=MS.gene017696.t1 |
| chr7.1 | CDS | 17297658 | 17297782 | 17297658 | ID=cds.MS.gene017696.t1;Parent=MS.gene017696.t1 |
| Gene Sequence |
| Protein sequence |
