Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017708.t1 | RHN47713.1 | 98.4 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 6.80E-111 | 410.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017708.t1 | O80674 | 68.5 | 178 | 52 | 3 | 57 | 232 | 49 | 224 | 4.4e-58 | 226.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017708.t1 | A0A396H4N2 | 98.4 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 4.9e-111 | 410.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene017708.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017708.t1 | MTR_7g089400 | 87.200 | 125 | 15 | 1 | 1 | 125 | 1 | 124 | 1.51e-74 | 223 |
MS.gene017708.t1 | MTR_1g093750 | 49.215 | 191 | 90 | 3 | 59 | 243 | 141 | 330 | 1.22e-47 | 161 |
MS.gene017708.t1 | MTR_3g070970 | 35.317 | 252 | 137 | 6 | 14 | 243 | 7 | 254 | 4.06e-42 | 144 |
MS.gene017708.t1 | MTR_2g091190 | 46.369 | 179 | 89 | 3 | 71 | 243 | 54 | 231 | 4.00e-34 | 123 |
MS.gene017708.t1 | MTR_2g015890 | 38.636 | 176 | 99 | 3 | 71 | 241 | 62 | 233 | 5.76e-31 | 115 |
MS.gene017708.t1 | MTR_4g079760 | 42.021 | 188 | 92 | 5 | 68 | 243 | 60 | 242 | 3.08e-28 | 108 |
MS.gene017708.t1 | MTR_2g015890 | 41.880 | 117 | 64 | 1 | 71 | 187 | 62 | 174 | 9.66e-25 | 98.2 |
MS.gene017708.t1 | MTR_5g066080 | 39.080 | 174 | 78 | 3 | 59 | 206 | 19 | 190 | 1.22e-23 | 96.3 |
MS.gene017708.t1 | MTR_5g032375 | 32.093 | 215 | 118 | 6 | 32 | 233 | 7 | 206 | 5.24e-22 | 90.9 |
MS.gene017708.t1 | MTR_4g087920 | 37.805 | 164 | 97 | 4 | 70 | 230 | 69 | 230 | 9.58e-22 | 91.7 |
MS.gene017708.t1 | MTR_2g015890 | 34.058 | 138 | 82 | 3 | 109 | 241 | 2 | 135 | 1.77e-15 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017708.t1 | AT2G41130 | 62.100 | 219 | 77 | 5 | 18 | 233 | 10 | 225 | 4.93e-81 | 244 |
MS.gene017708.t1 | AT3G56770 | 61.140 | 193 | 61 | 4 | 70 | 250 | 39 | 229 | 5.85e-73 | 222 |
MS.gene017708.t1 | AT1G68810 | 45.729 | 199 | 96 | 3 | 57 | 243 | 151 | 349 | 2.10e-46 | 159 |
MS.gene017708.t1 | AT3G25710 | 57.857 | 140 | 57 | 1 | 72 | 211 | 128 | 265 | 6.49e-44 | 151 |
MS.gene017708.t1 | AT2G40200 | 41.579 | 190 | 94 | 4 | 71 | 245 | 58 | 245 | 7.88e-35 | 125 |
MS.gene017708.t1 | AT4G38070 | 34.807 | 181 | 102 | 5 | 26 | 206 | 50 | 214 | 2.18e-22 | 92.8 |
Find 48 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTGTTATTTCGTCGGTTT+CGG | 0.235930 | 7.4:-19456082 | None:intergenic |
TTTCGATTAGGTCGGGAATT+AGG | 0.256589 | 7.4:-19456182 | None:intergenic |
CAACAGATTCAGAATAATAT+TGG | 0.265015 | 7.4:+19454684 | MS.gene017708:CDS |
GTAATAGTTATTGTTGTTAT+CGG | 0.378138 | 7.4:-19454817 | None:intergenic |
GAATTCACTCAGGTCTTTGT+TGG | 0.378871 | 7.4:+19456332 | MS.gene017708:CDS |
GAGACTTGAGGATTTCGATT+AGG | 0.380801 | 7.4:-19456194 | None:intergenic |
AACAGATTCAGAATAATATT+GGG | 0.426141 | 7.4:+19454685 | MS.gene017708:CDS |
TGTTGCATCATAGTGCTACT+AGG | 0.431842 | 7.4:-19454777 | None:intergenic |
GTCGAAAAGGCGTCGAGGGT+TGG | 0.453710 | 7.4:+19456380 | MS.gene017708:CDS |
GTTGAGTATTCAAAGAATGA+AGG | 0.456323 | 7.4:-19454753 | None:intergenic |
GCTGAAATGGCCACACTTGG+TGG | 0.460387 | 7.4:+19456237 | MS.gene017708:CDS |
CACTCAGGTCTTTGTTGGAT+AGG | 0.462227 | 7.4:+19456337 | MS.gene017708:CDS |
AGGAAGCTGAGAAGAGAAGA+AGG | 0.471315 | 7.4:+19454916 | MS.gene017708:CDS |
GGCAATGACATCTCCGACGA+AGG | 0.483297 | 7.4:+19456114 | MS.gene017708:CDS |
GTTATTTCGTCGGTTTCGGA+TGG | 0.483862 | 7.4:-19456078 | None:intergenic |
GTAATTTCAGAAACTTCAAA+GGG | 0.483898 | 7.4:-19454843 | None:intergenic |
TTGAGGATTTCGATTAGGTC+GGG | 0.493776 | 7.4:-19456189 | None:intergenic |
AGTAATTTCAGAAACTTCAA+AGG | 0.496460 | 7.4:-19454844 | None:intergenic |
CTTGAGGATTTCGATTAGGT+CGG | 0.504746 | 7.4:-19456190 | None:intergenic |
CCTTGGAGTTGCAAGGGAGA+AGG | 0.512266 | 7.4:-19454974 | None:intergenic |
CTTGGAGTTGCAAGGGAGAA+GGG | 0.521866 | 7.4:-19454973 | None:intergenic |
TTCGTCGGAGATGTCATTGC+CGG | 0.522101 | 7.4:-19456112 | None:intergenic |
TTGAGTATTCAAAGAATGAA+GGG | 0.546799 | 7.4:-19454752 | None:intergenic |
CCTTCTCCCTTGCAACTCCA+AGG | 0.549041 | 7.4:+19454974 | MS.gene017708:CDS |
ATAATAACCTTGGAGTTGCA+AGG | 0.549750 | 7.4:-19454981 | None:intergenic |
AGAGCTGAAATGGCCACACT+TGG | 0.551920 | 7.4:+19456234 | MS.gene017708:CDS |
TCTTTGTTGGATAGGTCTAG+TGG | 0.556474 | 7.4:+19456345 | MS.gene017708:CDS |
AGATATGACTGTTATTTCGT+CGG | 0.558305 | 7.4:-19456088 | None:intergenic |
GGTCTAGTGGTTGTAACGAT+AGG | 0.565435 | 7.4:+19456358 | MS.gene017708:CDS |
TAATAACCTTGGAGTTGCAA+GGG | 0.573577 | 7.4:-19454980 | None:intergenic |
AAGGGAGAAGGGTACGAAGA+TGG | 0.575464 | 7.4:-19454962 | None:intergenic |
ACGTGTTCTTCCACCAAGTG+TGG | 0.575747 | 7.4:-19456247 | None:intergenic |
GAATATGAGTCTGCCTTCGT+CGG | 0.576237 | 7.4:-19456127 | None:intergenic |
ATAGGTCGAAAAGGCGTCGA+GGG | 0.576982 | 7.4:+19456376 | MS.gene017708:CDS |
AGAGCTCTATCTTGCTGAGA+GGG | 0.579252 | 7.4:-19454873 | None:intergenic |
GTTGTAACGATAGGTCGAAA+AGG | 0.580273 | 7.4:+19456367 | MS.gene017708:CDS |
TTTCAGAAACTTCAAAGGGG+TGG | 0.587837 | 7.4:-19454839 | None:intergenic |
GAAATAACAGTCATATCTGC+CGG | 0.595239 | 7.4:+19456093 | MS.gene017708:CDS |
GATTCAGAATAATATTGGGA+TGG | 0.603750 | 7.4:+19454689 | MS.gene017708:CDS |
GGAAGCTGAGAAGAGAAGAA+GGG | 0.604105 | 7.4:+19454917 | MS.gene017708:CDS |
GATTAGGTCGGGAATTAGGT+CGG | 0.607145 | 7.4:-19456178 | None:intergenic |
GAAGGGTACGAAGATGGTCA+AGG | 0.633890 | 7.4:-19454956 | None:intergenic |
AGCTGCTTTGAAGAATCACA+AGG | 0.645458 | 7.4:+19454896 | MS.gene017708:CDS |
TAGAGCTCTATCTTGCTGAG+AGG | 0.647696 | 7.4:-19454874 | None:intergenic |
GATAGGTCGAAAAGGCGTCG+AGG | 0.658588 | 7.4:+19456375 | MS.gene017708:CDS |
TGATTGATTTCAGACAGACA+AGG | 0.674472 | 7.4:+19455975 | MS.gene017708:intron |
TAATTTCAGAAACTTCAAAG+GGG | 0.757536 | 7.4:-19454842 | None:intergenic |
ATGAAGGGTTGTTAGCAACG+AGG | 0.773094 | 7.4:-19454737 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAGATTCAGAATAATATT+GGG | + | chr7.4:19454685-19454704 | MS.gene017708:CDS | 20.0% |
!! | AATGATGAAAATAATAACCT+TGG | - | chr7.4:19454994-19455013 | None:intergenic | 20.0% |
!! | AATTATTTGCAAATTAAGCT+AGG | + | chr7.4:19455562-19455581 | MS.gene017708:intron | 20.0% |
!! | ATTATTTGCAAATTAAGCTA+GGG | + | chr7.4:19455563-19455582 | MS.gene017708:intron | 20.0% |
!! | GATGTTCCAAAAAATAATTA+AGG | - | chr7.4:19455343-19455362 | None:intergenic | 20.0% |
!! | TCATTCTTAATTATTTGTCT+TGG | + | chr7.4:19455009-19455028 | MS.gene017708:intron | 20.0% |
!!! | CTAGATCCTTAATTATTTTT+TGG | + | chr7.4:19455334-19455353 | MS.gene017708:intron | 20.0% |
!!! | GCTTAATTTGCAAATAATTT+TGG | - | chr7.4:19455561-19455580 | None:intergenic | 20.0% |
!!! | GTAATAGTTATTGTTGTTAT+CGG | - | chr7.4:19454820-19454839 | None:intergenic | 20.0% |
!!! | TTGGATTACATATTTTTTGT+AGG | - | chr7.4:19455492-19455511 | None:intergenic | 20.0% |
! | AGTAATTTCAGAAACTTCAA+AGG | - | chr7.4:19454847-19454866 | None:intergenic | 25.0% |
! | CAACAGATTCAGAATAATAT+TGG | + | chr7.4:19454684-19454703 | MS.gene017708:CDS | 25.0% |
! | CTTAATTACTAAAGTGAGAA+AGG | - | chr7.4:19455232-19455251 | None:intergenic | 25.0% |
! | GTAATTTCAGAAACTTCAAA+GGG | - | chr7.4:19454846-19454865 | None:intergenic | 25.0% |
! | TAATTTCAGAAACTTCAAAG+GGG | - | chr7.4:19454845-19454864 | None:intergenic | 25.0% |
! | TAGTCATGTATAAAACTTGA+TGG | - | chr7.4:19455652-19455671 | None:intergenic | 25.0% |
! | TTGAGTATTCAAAGAATGAA+GGG | - | chr7.4:19454755-19454774 | None:intergenic | 25.0% |
!! | ACATGTTTTCACTCTTTTTT+TGG | - | chr7.4:19455177-19455196 | None:intergenic | 25.0% |
!! | TCAATTTTACAAAACCTACA+AGG | + | chr7.4:19455770-19455789 | MS.gene017708:intron | 25.0% |
!! | TTTTGTTCTTTTGTTCTCAA+AGG | + | chr7.4:19455075-19455094 | MS.gene017708:intron | 25.0% |
!!! | TTGTAGGTTTTGTAAAATTG+AGG | - | chr7.4:19455771-19455790 | None:intergenic | 25.0% |
AAACCATTGTGATTTAGAAG+AGG | - | chr7.4:19455798-19455817 | None:intergenic | 30.0% | |
GATTCAGAATAATATTGGGA+TGG | + | chr7.4:19454689-19454708 | MS.gene017708:CDS | 30.0% | |
GTTGAGTATTCAAAGAATGA+AGG | - | chr7.4:19454756-19454775 | None:intergenic | 30.0% | |
TGATGAGTGATTAAGTTCAT+TGG | - | chr7.4:19455511-19455530 | None:intergenic | 30.0% | |
! | ATTTTCTTCAGAATTCACTC+AGG | + | chr7.4:19456322-19456341 | MS.gene017708:CDS | 30.0% |
! | CTTTAGTAATTAAGTTGCCA+TGG | + | chr7.4:19455238-19455257 | MS.gene017708:intron | 30.0% |
!! | AGATATGACTGTTATTTCGT+CGG | - | chr7.4:19456091-19456110 | None:intergenic | 30.0% |
!! | TCATTTTTGTCTCAAAACCT+AGG | - | chr7.4:19455875-19455894 | None:intergenic | 30.0% |
!!! | GTTTTCACTCTTTTTTTGGA+TGG | - | chr7.4:19455173-19455192 | None:intergenic | 30.0% |
AAAAACTCTCAGAGCTGAAA+TGG | + | chr7.4:19456224-19456243 | MS.gene017708:CDS | 35.0% | |
ACACACACAATTATCTTTGC+TGG | - | chr7.4:19455116-19455135 | None:intergenic | 35.0% | |
ATAATAACCTTGGAGTTGCA+AGG | - | chr7.4:19454984-19455003 | None:intergenic | 35.0% | |
CTAGTACATGTTTGCATATG+TGG | - | chr7.4:19455833-19455852 | None:intergenic | 35.0% | |
GAAATAACAGTCATATCTGC+CGG | + | chr7.4:19456093-19456112 | MS.gene017708:CDS | 35.0% | |
TAATAACCTTGGAGTTGCAA+GGG | - | chr7.4:19454983-19455002 | None:intergenic | 35.0% | |
TCAATCTTGTCACAAAACCT+AGG | - | chr7.4:19455912-19455931 | None:intergenic | 35.0% | |
TCTTATGAGTTTAGCACAAG+TGG | + | chr7.4:19455407-19455426 | MS.gene017708:intron | 35.0% | |
TGATGAAGAAAGCAAAACCT+AGG | + | chr7.4:19455892-19455911 | MS.gene017708:intron | 35.0% | |
! | AGGCATATTTTCACTCATTC+TGG | - | chr7.4:19455212-19455231 | None:intergenic | 35.0% |
! | AGTATCGAACTCAAAACATC+CGG | - | chr7.4:19455467-19455486 | None:intergenic | 35.0% |
! | GTAAAGTACTACATGTTCCA+TGG | - | chr7.4:19455258-19455277 | None:intergenic | 35.0% |
! | TGATTGATTTCAGACAGACA+AGG | + | chr7.4:19455975-19455994 | MS.gene017708:intron | 35.0% |
!!! | TTTCAGCTCTGAGAGTTTTT+AGG | - | chr7.4:19456224-19456243 | None:intergenic | 35.0% |
!!! | TTTTTAGGTGAAGAGACTTG+AGG | - | chr7.4:19456209-19456228 | None:intergenic | 35.0% |
ATGAGTTTAGCACAAGTGGT+CGG | + | chr7.4:19455411-19455430 | MS.gene017708:intron | 40.0% | |
ATTTAGAAGAGGCTCCTTGT+AGG | - | chr7.4:19455787-19455806 | None:intergenic | 40.0% | |
CTTGAGGATTTCGATTAGGT+CGG | - | chr7.4:19456193-19456212 | None:intergenic | 40.0% | |
GAATTCACTCAGGTCTTTGT+TGG | + | chr7.4:19456332-19456351 | MS.gene017708:CDS | 40.0% | |
GAGACTTGAGGATTTCGATT+AGG | - | chr7.4:19456197-19456216 | None:intergenic | 40.0% | |
GAGCCTCTTCTAAATCACAA+TGG | + | chr7.4:19455792-19455811 | MS.gene017708:intron | 40.0% | |
GTTGTAACGATAGGTCGAAA+AGG | + | chr7.4:19456367-19456386 | MS.gene017708:CDS | 40.0% | |
TCTTTGTTGGATAGGTCTAG+TGG | + | chr7.4:19456345-19456364 | MS.gene017708:CDS | 40.0% | |
TGATGAAGAAAGCAAAGCCT+AGG | + | chr7.4:19455855-19455874 | MS.gene017708:intron | 40.0% | |
TTAAGCTAGGGAAGTCACTT+AGG | + | chr7.4:19455575-19455594 | MS.gene017708:intron | 40.0% | |
TTGAGGATTTCGATTAGGTC+GGG | - | chr7.4:19456192-19456211 | None:intergenic | 40.0% | |
TTTCAGAAACTTCAAAGGGG+TGG | - | chr7.4:19454842-19454861 | None:intergenic | 40.0% | |
TTTCGATTAGGTCGGGAATT+AGG | - | chr7.4:19456185-19456204 | None:intergenic | 40.0% | |
! | AGGGAAGTCACTTAGGTTTT+AGG | + | chr7.4:19455582-19455601 | MS.gene017708:intron | 40.0% |
! | TAGCTTTTGCAAAATCGTGG+TGG | - | chr7.4:19455743-19455762 | None:intergenic | 40.0% |
! | TCGTAGCTTTTGCAAAATCG+TGG | - | chr7.4:19455746-19455765 | None:intergenic | 40.0% |
! | TGTCTGAAGTGGTGTATATC+CGG | + | chr7.4:19455445-19455464 | MS.gene017708:intron | 40.0% |
! | TGTTGCATCATAGTGCTACT+AGG | - | chr7.4:19454780-19454799 | None:intergenic | 40.0% |
!! | AGCTGCTTTGAAGAATCACA+AGG | + | chr7.4:19454896-19454915 | MS.gene017708:CDS | 40.0% |
!! | GACTGTTATTTCGTCGGTTT+CGG | - | chr7.4:19456085-19456104 | None:intergenic | 40.0% |
AGAGCTCTATCTTGCTGAGA+GGG | - | chr7.4:19454876-19454895 | None:intergenic | 45.0% | |
AGGAAGCTGAGAAGAGAAGA+AGG | + | chr7.4:19454916-19454935 | MS.gene017708:CDS | 45.0% | |
ATGAAGGGTTGTTAGCAACG+AGG | - | chr7.4:19454740-19454759 | None:intergenic | 45.0% | |
CACTCAGGTCTTTGTTGGAT+AGG | + | chr7.4:19456337-19456356 | MS.gene017708:CDS | 45.0% | |
GAATATGAGTCTGCCTTCGT+CGG | - | chr7.4:19456130-19456149 | None:intergenic | 45.0% | |
GATTAGGTCGGGAATTAGGT+CGG | - | chr7.4:19456181-19456200 | None:intergenic | 45.0% | |
GGAAGCTGAGAAGAGAAGAA+GGG | + | chr7.4:19454917-19454936 | MS.gene017708:CDS | 45.0% | |
GGTCTAGTGGTTGTAACGAT+AGG | + | chr7.4:19456358-19456377 | MS.gene017708:CDS | 45.0% | |
TAGAGCTCTATCTTGCTGAG+AGG | - | chr7.4:19454877-19454896 | None:intergenic | 45.0% | |
TGCGTAATGTGTGTCTGAAG+TGG | + | chr7.4:19455434-19455453 | MS.gene017708:intron | 45.0% | |
!! | GTTATTTCGTCGGTTTCGGA+TGG | - | chr7.4:19456081-19456100 | None:intergenic | 45.0% |
!!! | TTTTATTTTTTTACTATTTA+AGG | - | chr7.4:19455538-19455557 | None:intergenic | 5.0% |
ACGTGTTCTTCCACCAAGTG+TGG | - | chr7.4:19456250-19456269 | None:intergenic | 50.0% | |
AGAGCTGAAATGGCCACACT+TGG | + | chr7.4:19456234-19456253 | MS.gene017708:CDS | 50.0% | |
CTTGGAGTTGCAAGGGAGAA+GGG | - | chr7.4:19454976-19454995 | None:intergenic | 50.0% | |
TTCGTCGGAGATGTCATTGC+CGG | - | chr7.4:19456115-19456134 | None:intergenic | 50.0% | |
! | AAGGGAGAAGGGTACGAAGA+TGG | - | chr7.4:19454965-19454984 | None:intergenic | 50.0% |
! | GAAGGGTACGAAGATGGTCA+AGG | - | chr7.4:19454959-19454978 | None:intergenic | 50.0% |
!! | ATAGGTCGAAAAGGCGTCGA+GGG | + | chr7.4:19456376-19456395 | MS.gene017708:CDS | 50.0% |
CCTTCTCCCTTGCAACTCCA+AGG | + | chr7.4:19454974-19454993 | MS.gene017708:CDS | 55.0% | |
CCTTGGAGTTGCAAGGGAGA+AGG | - | chr7.4:19454977-19454996 | None:intergenic | 55.0% | |
GCTGAAATGGCCACACTTGG+TGG | + | chr7.4:19456237-19456256 | MS.gene017708:CDS | 55.0% | |
GGCAATGACATCTCCGACGA+AGG | + | chr7.4:19456114-19456133 | MS.gene017708:CDS | 55.0% | |
!! | GATAGGTCGAAAAGGCGTCG+AGG | + | chr7.4:19456375-19456394 | MS.gene017708:CDS | 55.0% |
!! | GTCGAAAAGGCGTCGAGGGT+TGG | + | chr7.4:19456380-19456399 | MS.gene017708:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 19454675 | 19456422 | 19454675 | ID=MS.gene017708 |
chr7.4 | mRNA | 19454675 | 19456422 | 19454675 | ID=MS.gene017708.t1;Parent=MS.gene017708 |
chr7.4 | exon | 19454675 | 19454995 | 19454675 | ID=MS.gene017708.t1.exon1;Parent=MS.gene017708.t1 |
chr7.4 | CDS | 19454675 | 19454995 | 19454675 | ID=cds.MS.gene017708.t1;Parent=MS.gene017708.t1 |
chr7.4 | exon | 19455988 | 19456422 | 19455988 | ID=MS.gene017708.t1.exon2;Parent=MS.gene017708.t1 |
chr7.4 | CDS | 19455988 | 19456422 | 19455988 | ID=cds.MS.gene017708.t1;Parent=MS.gene017708.t1 |
Gene Sequence |
Protein sequence |