Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017761.t1 | XP_003625012.1 | 99.7 | 364 | 1 | 0 | 1 | 364 | 1 | 364 | 3.90E-192 | 680.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017761.t1 | Q2HW56 | 99.7 | 364 | 1 | 0 | 1 | 364 | 1 | 364 | 9.4e-195 | 680.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017761.t1 | B9H966 | 89.6 | 366 | 34 | 2 | 1 | 364 | 1 | 364 | 2.3e-178 | 634.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017761.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017761.t1 | MTR_7g090020 | 99.725 | 364 | 1 | 0 | 1 | 364 | 1 | 364 | 0.0 | 748 |
| MS.gene017761.t1 | MTR_1g051025 | 87.637 | 364 | 44 | 1 | 1 | 364 | 1 | 363 | 0.0 | 629 |
| MS.gene017761.t1 | MTR_5g090770 | 34.615 | 338 | 197 | 7 | 24 | 358 | 66 | 382 | 6.92e-51 | 176 |
| MS.gene017761.t1 | MTR_2g028950 | 36.158 | 354 | 205 | 7 | 6 | 358 | 44 | 377 | 1.32e-50 | 177 |
| MS.gene017761.t1 | MTR_2g028950 | 36.158 | 354 | 205 | 7 | 6 | 358 | 44 | 377 | 4.49e-50 | 177 |
| MS.gene017761.t1 | MTR_5g090770 | 34.615 | 338 | 197 | 7 | 24 | 358 | 66 | 382 | 1.50e-49 | 175 |
| MS.gene017761.t1 | MTR_2g039880 | 30.769 | 338 | 201 | 5 | 24 | 358 | 65 | 372 | 7.20e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017761.t1 | AT2G41370 | 84.367 | 371 | 46 | 4 | 2 | 364 | 3 | 369 | 0.0 | 636 |
| MS.gene017761.t1 | AT3G57130 | 82.337 | 368 | 51 | 3 | 2 | 364 | 4 | 362 | 0.0 | 614 |
| MS.gene017761.t1 | AT3G57130 | 74.699 | 166 | 34 | 2 | 2 | 162 | 4 | 166 | 4.66e-84 | 253 |
| MS.gene017761.t1 | AT4G19660 | 32.312 | 359 | 205 | 7 | 6 | 358 | 34 | 360 | 7.09e-44 | 160 |
| MS.gene017761.t1 | AT4G19660 | 32.312 | 359 | 205 | 7 | 6 | 358 | 34 | 360 | 9.66e-44 | 160 |
| MS.gene017761.t1 | AT5G45110 | 31.268 | 355 | 219 | 6 | 6 | 359 | 40 | 370 | 1.41e-41 | 152 |
| MS.gene017761.t1 | AT5G45110 | 31.268 | 355 | 219 | 6 | 6 | 359 | 40 | 370 | 3.64e-41 | 152 |
| MS.gene017761.t1 | AT1G64280 | 29.787 | 329 | 201 | 5 | 32 | 358 | 73 | 373 | 8.31e-34 | 132 |
| MS.gene017761.t1 | AT4G26120 | 29.878 | 328 | 197 | 6 | 33 | 358 | 76 | 372 | 5.71e-32 | 127 |
| MS.gene017761.t1 | AT4G26120 | 29.878 | 328 | 197 | 6 | 33 | 358 | 77 | 373 | 5.74e-32 | 127 |
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATAGAAAATCTGAAGTT+AGG | 0.230108 | 7.3:+18995521 | None:intergenic |
| GATGCGAAGCTCTTCGATTT+TGG | 0.235029 | 7.3:+18995957 | None:intergenic |
| TGTGGGCCAGACCCACCTTC+TGG | 0.259914 | 7.3:-18997801 | MS.gene017761:CDS |
| ATGATGGTGGTGAGGCATTA+AGG | 0.333824 | 7.3:+18995912 | None:intergenic |
| AACAAGACATGCACCAACTA+TGG | 0.344045 | 7.3:-18996059 | MS.gene017761:CDS |
| CTAATGCTTCATCAAGGTTT+AGG | 0.354695 | 7.3:+18995767 | None:intergenic |
| GGAGATGGTCTCACCGGATA+TGG | 0.367743 | 7.3:-18995623 | MS.gene017761:CDS |
| TGCAGCCGATGTTAACTTCC+CGG | 0.370396 | 7.3:-18995683 | MS.gene017761:CDS |
| CAACCACGGTCACCACAATT+AGG | 0.374903 | 7.3:+18997624 | None:intergenic |
| CCATCAACTGTTCTCACATT+CGG | 0.388403 | 7.3:+18995571 | None:intergenic |
| AACTTCCCGGCTGGTCCAAC+GGG | 0.394050 | 7.3:-18995670 | MS.gene017761:CDS |
| CATCAACTGTTCTCACATTC+GGG | 0.411634 | 7.3:+18995572 | None:intergenic |
| CTGCAATTCTCAACGGCATA+AGG | 0.421725 | 7.3:+18995739 | None:intergenic |
| AGAAGTTGTGAAAGCCTTGT+TGG | 0.425240 | 7.3:-18995713 | MS.gene017761:CDS |
| GAGATCTTAGTGAGTCTTCA+AGG | 0.426128 | 7.3:+18997958 | None:intergenic |
| GGGTTGACTCGGTTTCCTGA+TGG | 0.427587 | 7.3:+18997771 | None:intergenic |
| GAATAGAAAATCTGAAGTTA+GGG | 0.433840 | 7.3:+18995522 | None:intergenic |
| TCGTAACCAACTGAGTTAAC+TGG | 0.436058 | 7.3:+18997720 | None:intergenic |
| GGTTGACTCGGTTTCCTGAT+GGG | 0.440013 | 7.3:+18997772 | None:intergenic |
| AACACCAGACCTAGCTGAAC+CGG | 0.442219 | 7.3:+18997746 | None:intergenic |
| AGCAATACAGCCACCATATC+CGG | 0.442702 | 7.3:+18995610 | None:intergenic |
| TTCTTCAGAAAATTCTTCTG+TGG | 0.443436 | 7.3:-18997819 | MS.gene017761:CDS |
| CTTGTGAAACTCATGGTAAT+GGG | 0.452131 | 7.3:-18995796 | MS.gene017761:CDS |
| GCTTGTGAAACTCATGGTAA+TGG | 0.456091 | 7.3:-18995797 | MS.gene017761:CDS |
| TCTAATCCAGAAGGTGGGTC+TGG | 0.456640 | 7.3:+18997795 | None:intergenic |
| CATTAAGGAGCGGCGTGATA+AGG | 0.463719 | 7.3:+18995927 | None:intergenic |
| GTCTTCAAGGTCGGCTGCAG+CGG | 0.467472 | 7.3:+18995867 | None:intergenic |
| GTTATACCAGTTAACTCAGT+TGG | 0.472537 | 7.3:-18997726 | MS.gene017761:CDS |
| TCCCACCTTGTAGCAAAATC+AGG | 0.472615 | 7.3:-18996027 | MS.gene017761:CDS |
| GGTCGGCTGCAGCGGTGAGA+TGG | 0.490105 | 7.3:+18995875 | None:intergenic |
| GCCGATGTTAACTTCCCGGC+TGG | 0.496241 | 7.3:-18995679 | MS.gene017761:CDS |
| AGTTGATGGTGTTACACCCT+TGG | 0.497853 | 7.3:-18995557 | MS.gene017761:CDS |
| ATTGTGGTGACCGTGGTTGT+TGG | 0.504368 | 7.3:-18997620 | MS.gene017761:CDS |
| TAACTTCCCGGCTGGTCCAA+CGG | 0.512321 | 7.3:-18995671 | MS.gene017761:CDS |
| TCTTCAGAAAATTCTTCTGT+GGG | 0.516918 | 7.3:-18997818 | MS.gene017761:CDS |
| ACGCTTGTCCGTTGATGAGA+AGG | 0.520055 | 7.3:+18997916 | None:intergenic |
| CCGAATGTGAGAACAGTTGA+TGG | 0.521071 | 7.3:-18995571 | MS.gene017761:CDS |
| CCTTCTGGATTAGACCCATC+AGG | 0.521120 | 7.3:-18997786 | MS.gene017761:CDS |
| GCTACATATTGCAGCGGAGA+TGG | 0.524554 | 7.3:-18995638 | MS.gene017761:CDS |
| CTTTCAGCCGCTAGATACTT+CGG | 0.525081 | 7.3:-18997555 | MS.gene017761:CDS |
| TGCTACAAGGTGGGAACATG+TGG | 0.531996 | 7.3:+18996035 | None:intergenic |
| TAGGGTTCTTAGAATGTCCA+AGG | 0.536805 | 7.3:+18995540 | None:intergenic |
| CCATCCGGTTCAGCTAGGTC+TGG | 0.539454 | 7.3:-18997750 | MS.gene017761:CDS |
| GGAAACCGAGTCAACCCATC+CGG | 0.539988 | 7.3:-18997765 | MS.gene017761:CDS |
| GGTCGTGATGGTGAGGATGA+TGG | 0.543235 | 7.3:+18995896 | None:intergenic |
| TACTTAAACCTTCTCATCAA+CGG | 0.546164 | 7.3:-18997924 | MS.gene017761:CDS |
| TCACATTCGGGTCAGCGTGA+TGG | 0.551477 | 7.3:+18995584 | None:intergenic |
| CTGAACCGGATGGGTTGACT+CGG | 0.552813 | 7.3:+18997760 | None:intergenic |
| GGCCTAGGTTCATGTTTCTG+AGG | 0.555362 | 7.3:+18997645 | None:intergenic |
| CTCGACGTCTGAGGAGTCGA+GGG | 0.562950 | 7.3:+18995819 | None:intergenic |
| TGCAGCGGAGATGGTCTCAC+CGG | 0.562963 | 7.3:-18995629 | MS.gene017761:CDS |
| GCTCGACGTCTGAGGAGTCG+AGG | 0.564744 | 7.3:+18995818 | None:intergenic |
| AAACTCATGGTAATGGGAGA+AGG | 0.568060 | 7.3:-18995790 | MS.gene017761:CDS |
| ACAGCTTGCATTGCTCACTC+AGG | 0.569799 | 7.3:-18997526 | MS.gene017761:intron |
| GTAATGCTAATGCTTCATCA+AGG | 0.571238 | 7.3:+18995761 | None:intergenic |
| GTGAAAGCCTTGTTGGAACT+CGG | 0.572326 | 7.3:-18995706 | MS.gene017761:CDS |
| ATGCTTCAGTTTCTGTACAG+TGG | 0.576559 | 7.3:-18997684 | MS.gene017761:CDS |
| TTTCATTACATCTTCAATCG+AGG | 0.580013 | 7.3:+18996101 | None:intergenic |
| AAGAGCAAGATCAACGGCTG+AGG | 0.588511 | 7.3:+18997584 | None:intergenic |
| CGGTCACCACAATTAGGCCT+AGG | 0.589003 | 7.3:+18997630 | None:intergenic |
| TTCTCTACTGCAATTCTCAA+CGG | 0.590267 | 7.3:+18995732 | None:intergenic |
| TCAACCCATCCGGTTCAGCT+AGG | 0.592108 | 7.3:-18997755 | MS.gene017761:CDS |
| CTAAGATGCATCTGTGTGCG+TGG | 0.593852 | 7.3:+18997856 | None:intergenic |
| TAAGGAGCGGCGTGATAAGG+AGG | 0.595576 | 7.3:+18995930 | None:intergenic |
| GGGAACATGTGGTCCATAGT+TGG | 0.598309 | 7.3:+18996046 | None:intergenic |
| GATGGGTCTAATCCAGAAGG+TGG | 0.598545 | 7.3:+18997789 | None:intergenic |
| ACAGAAACAACTAGCGAGCA+TGG | 0.599468 | 7.3:-18996133 | MS.gene017761:intron |
| CGTCGAGCTTGTGAAACTCA+TGG | 0.600204 | 7.3:-18995803 | MS.gene017761:CDS |
| AGTTAACTCAGTTGGTTACG+AGG | 0.607152 | 7.3:-18997718 | MS.gene017761:CDS |
| GATGGTCTCACCGGATATGG+TGG | 0.607668 | 7.3:-18995620 | MS.gene017761:CDS |
| CGAGGGCTCGTCTCATCCGA+CGG | 0.607669 | 7.3:+18995836 | None:intergenic |
| CAGCGGTGAGATGGTCGTGA+TGG | 0.610483 | 7.3:+18995884 | None:intergenic |
| CCAGACCTAGCTGAACCGGA+TGG | 0.611566 | 7.3:+18997750 | None:intergenic |
| AGATCTTAGTGAGTCTTCAA+GGG | 0.612991 | 7.3:+18997959 | None:intergenic |
| TTTCACAAGCTCGACGTCTG+AGG | 0.613011 | 7.3:+18995810 | None:intergenic |
| CCTGATGGGTCTAATCCAGA+AGG | 0.623455 | 7.3:+18997786 | None:intergenic |
| CAGACCTAGCTGAACCGGAT+GGG | 0.623790 | 7.3:+18997751 | None:intergenic |
| TGGTGAGGATGATGGTGGTG+AGG | 0.629304 | 7.3:+18995904 | None:intergenic |
| CGTGATGGTGAGGATGATGG+TGG | 0.631651 | 7.3:+18995899 | None:intergenic |
| CATGAACCTAGGCCTAATTG+TGG | 0.646688 | 7.3:-18997636 | MS.gene017761:CDS |
| GGCTGCACCGAGTTCCAACA+AGG | 0.646855 | 7.3:+18995699 | None:intergenic |
| AGTATCAAGAGCAAGATCAA+CGG | 0.653625 | 7.3:+18997578 | None:intergenic |
| GTGAGATGGTCGTGATGGTG+AGG | 0.655300 | 7.3:+18995889 | None:intergenic |
| ATGGGTCTAATCCAGAAGGT+GGG | 0.656727 | 7.3:+18997790 | None:intergenic |
| ATCTCCGCTGCAATATGTAG+CGG | 0.657846 | 7.3:+18995640 | None:intergenic |
| AGGGTTCTTAGAATGTCCAA+GGG | 0.662287 | 7.3:+18995541 | None:intergenic |
| TTCAACTCCGAAGTATCTAG+CGG | 0.662542 | 7.3:+18997548 | None:intergenic |
| TTCCTCAGAAACATGAACCT+AGG | 0.668829 | 7.3:-18997647 | MS.gene017761:CDS |
| AACTCCGCTACATATTGCAG+CGG | 0.669845 | 7.3:-18995644 | MS.gene017761:CDS |
| GGTGGTGAGGCATTAAGGAG+CGG | 0.674544 | 7.3:+18995917 | None:intergenic |
| AATGTGTATGCCAACAACCA+CGG | 0.675672 | 7.3:+18997610 | None:intergenic |
| ACCAGCCGGGAAGTTAACAT+CGG | 0.692763 | 7.3:+18995678 | None:intergenic |
| TTGAAGACCAGAAAATCCGT+CGG | 0.696642 | 7.3:-18995852 | MS.gene017761:CDS |
| AGGCCTAATTGTGGTGACCG+TGG | 0.704495 | 7.3:-18997627 | MS.gene017761:CDS |
| GAAACAACTAGCGAGCATGG+TGG | 0.736366 | 7.3:-18996130 | MS.gene017761:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGGAATTTTTTTAT+AGG | - | chr7.3:18997236-18997255 | MS.gene017761:intron | 10.0% |
| !! | AAAACAATAATAAAGAGAAA+AGG | + | chr7.3:18995993-18996012 | None:intergenic | 15.0% |
| !! | ATCACAAATTAACAAAAATA+TGG | + | chr7.3:18996614-18996633 | None:intergenic | 15.0% |
| !! | TATGGAAAAAATAAAATCAA+AGG | + | chr7.3:18996596-18996615 | None:intergenic | 15.0% |
| !!! | CATCAATTTTTTAATGAAAT+AGG | - | chr7.3:18996261-18996280 | MS.gene017761:intron | 15.0% |
| !! | ATAAACACATTGAAAATTAG+TGG | + | chr7.3:18997102-18997121 | None:intergenic | 20.0% |
| !!! | AACATTGATGCATTTTTTAT+AGG | - | chr7.3:18997222-18997241 | MS.gene017761:intron | 20.0% |
| !!! | ATGTTTTTTATCTGTCTTTA+CGG | + | chr7.3:18996543-18996562 | None:intergenic | 20.0% |
| !!! | TAATTTTCAATGTGTTTATG+TGG | - | chr7.3:18997103-18997122 | MS.gene017761:intron | 20.0% |
| ! | AAAAAACTACATTTCATGCA+AGG | + | chr7.3:18996980-18996999 | None:intergenic | 25.0% |
| ! | AAAAACTACATTTCATGCAA+GGG | + | chr7.3:18996979-18996998 | None:intergenic | 25.0% |
| ! | AAAGGAATCAATTAATGTGA+CGG | + | chr7.3:18996578-18996597 | None:intergenic | 25.0% |
| ! | AATTTAGAAACTCATTCTAG+TGG | + | chr7.3:18996724-18996743 | None:intergenic | 25.0% |
| ! | ATTTAGAAACTCATTCTAGT+GGG | + | chr7.3:18996723-18996742 | None:intergenic | 25.0% |
| ! | ATTTCATGTTATGTATGTAC+TGG | - | chr7.3:18996647-18996666 | MS.gene017761:intron | 25.0% |
| ! | CAATAATAAAGAGAAAAGGA+AGG | + | chr7.3:18995989-18996008 | None:intergenic | 25.0% |
| ! | GACAGTAGAATTAATTAATG+AGG | + | chr7.3:18996477-18996496 | None:intergenic | 25.0% |
| ! | GCTATAACAATCTAAACTAT+AGG | - | chr7.3:18997021-18997040 | MS.gene017761:intron | 25.0% |
| ! | TCAACAATAGATAGATAACT+TGG | - | chr7.3:18996357-18996376 | MS.gene017761:intron | 25.0% |
| ! | TTCTCTACTACACTTATTAA+TGG | + | chr7.3:18996018-18996037 | None:intergenic | 25.0% |
| !! | CTATTTAAAACCTAATTGCT+TGG | - | chr7.3:18997180-18997199 | MS.gene017761:intron | 25.0% |
| !! | GAATAGAAAATCTGAAGTTA+GGG | + | chr7.3:18997962-18997981 | None:intergenic | 25.0% |
| !! | TCTTAATCATGATTGTGTTT+TGG | + | chr7.3:18997129-18997148 | None:intergenic | 25.0% |
| !! | TGAATAGAAAATCTGAAGTT+AGG | + | chr7.3:18997963-18997982 | None:intergenic | 25.0% |
| !!! | ATTTGGTCTTAAAGAAGAAA+AGG | - | chr7.3:18996830-18996849 | MS.gene017761:intron | 25.0% |
| !!! | ATTTTGGCTATGATATCAAT+AGG | + | chr7.3:18997511-18997530 | None:intergenic | 25.0% |
| !!! | CATATATAATAGCATTGATG+CGG | + | chr7.3:18997152-18997171 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAAGAAGAAAA+GGG | - | chr7.3:18996831-18996850 | MS.gene017761:intron | 25.0% |
| !!! | TTTTGGCTATGATATCAATA+GGG | + | chr7.3:18997510-18997529 | None:intergenic | 25.0% |
| ATACATTCACTTTCCTCATT+TGG | - | chr7.3:18996813-18996832 | MS.gene017761:intron | 30.0% | |
| ATCTATCTATTGTTGATCGA+TGG | + | chr7.3:18996353-18996372 | None:intergenic | 30.0% | |
| ATGAGGAAAGTGAATGTATT+TGG | + | chr7.3:18996812-18996831 | None:intergenic | 30.0% | |
| ATGTATGTACTGGAAATTAG+AGG | - | chr7.3:18996657-18996676 | MS.gene017761:intron | 30.0% | |
| CAATAGATAGATAACTTGGT+TGG | - | chr7.3:18996361-18996380 | MS.gene017761:intron | 30.0% | |
| GAAAGAGAGTTAGACATAAA+TGG | + | chr7.3:18996858-18996877 | None:intergenic | 30.0% | |
| GAAGACACAAGATCAAATAA+TGG | + | chr7.3:18996394-18996413 | None:intergenic | 30.0% | |
| TACTTAAACCTTCTCATCAA+CGG | - | chr7.3:18995557-18995576 | MS.gene017761:CDS | 30.0% | |
| TCTATCTATTGTTGATCGAT+GGG | + | chr7.3:18996352-18996371 | None:intergenic | 30.0% | |
| TCTCTTTCATTTACCAAATG+AGG | - | chr7.3:18996870-18996889 | MS.gene017761:intron | 30.0% | |
| TCTTCAGAAAATTCTTCTGT+GGG | - | chr7.3:18995663-18995682 | MS.gene017761:CDS | 30.0% | |
| TGAGGAAAGTGAATGTATTT+GGG | + | chr7.3:18996811-18996830 | None:intergenic | 30.0% | |
| TTCTTCAGAAAATTCTTCTG+TGG | - | chr7.3:18995662-18995681 | MS.gene017761:CDS | 30.0% | |
| TTTCATTACATCTTCAATCG+AGG | + | chr7.3:18997383-18997402 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTAAGACCAAATG+AGG | + | chr7.3:18996829-18996848 | None:intergenic | 30.0% |
| !! | TTTTTGTTAATTAATGGGCG+AGG | - | chr7.3:18996205-18996224 | MS.gene017761:intron | 30.0% |
| AGATCTTAGTGAGTCTTCAA+GGG | + | chr7.3:18995525-18995544 | None:intergenic | 35.0% | |
| AGTATCAAGAGCAAGATCAA+CGG | + | chr7.3:18995906-18995925 | None:intergenic | 35.0% | |
| CATGCAAGGGAAAAAAGTTT+GGG | + | chr7.3:18996966-18996985 | None:intergenic | 35.0% | |
| CATTAATACAACTGCGATTG+AGG | - | chr7.3:18997069-18997088 | MS.gene017761:intron | 35.0% | |
| CGATTTCATTCCAAGCAATT+AGG | + | chr7.3:18997193-18997212 | None:intergenic | 35.0% | |
| CTAATGCTTCATCAAGGTTT+AGG | + | chr7.3:18997717-18997736 | None:intergenic | 35.0% | |
| CTTGTGAAACTCATGGTAAT+GGG | - | chr7.3:18997685-18997704 | MS.gene017761:CDS | 35.0% | |
| GTAATGCTAATGCTTCATCA+AGG | + | chr7.3:18997723-18997742 | None:intergenic | 35.0% | |
| GTTATACCAGTTAACTCAGT+TGG | - | chr7.3:18995755-18995774 | MS.gene017761:CDS | 35.0% | |
| TCATGCAAGGGAAAAAAGTT+TGG | + | chr7.3:18996967-18996986 | None:intergenic | 35.0% | |
| TTCTCTACTGCAATTCTCAA+CGG | + | chr7.3:18997752-18997771 | None:intergenic | 35.0% | |
| ! | ACATGACAGTTTTCTCGATT+TGG | - | chr7.3:18996687-18996706 | MS.gene017761:intron | 35.0% |
| ! | AGATGTTTTGCAAGTACTTC+TGG | + | chr7.3:18997487-18997506 | None:intergenic | 35.0% |
| ! | AGGGAAAAAAGTTTGGGATT+TGG | + | chr7.3:18996960-18996979 | None:intergenic | 35.0% |
| ! | ATGTTTTGCAAGTACTTCTG+GGG | + | chr7.3:18997485-18997504 | None:intergenic | 35.0% |
| ! | GAGGAATGAGAATGAGATTT+TGG | - | chr7.3:18996224-18996243 | MS.gene017761:intron | 35.0% |
| ! | GATGTTTTGCAAGTACTTCT+GGG | + | chr7.3:18997486-18997505 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGTTATCCTCATT+TGG | + | chr7.3:18996886-18996905 | None:intergenic | 35.0% |
| !!! | TCGTATGTTTTTTGGGTCTT+GGG | - | chr7.3:18996125-18996144 | MS.gene017761:CDS | 35.0% |
| !!! | TGACCAGTCGTATGTTTTTT+GGG | - | chr7.3:18996118-18996137 | MS.gene017761:CDS | 35.0% |
| !!! | TGTCTTGTTTTCTTGATGCT+AGG | + | chr7.3:18997411-18997430 | None:intergenic | 35.0% |
| !!! | TTCCACAGTTACTGGTTTTT+GGG | - | chr7.3:18996151-18996170 | MS.gene017761:intron | 35.0% |
| !!! | TTTCCACAGTTACTGGTTTT+TGG | - | chr7.3:18996150-18996169 | MS.gene017761:intron | 35.0% |
| AACAAGACATGCACCAACTA+TGG | - | chr7.3:18997422-18997441 | MS.gene017761:intron | 40.0% | |
| AATGTGTATGCCAACAACCA+CGG | + | chr7.3:18995874-18995893 | None:intergenic | 40.0% | |
| AGACCCAAAAAACATACGAC+TGG | + | chr7.3:18996124-18996143 | None:intergenic | 40.0% | |
| AGCAAAGAGAAGAAAGTGAG+TGG | + | chr7.3:18996905-18996924 | None:intergenic | 40.0% | |
| AGGGTTCTTAGAATGTCCAA+GGG | + | chr7.3:18997943-18997962 | None:intergenic | 40.0% | |
| AGTTAACTCAGTTGGTTACG+AGG | - | chr7.3:18995763-18995782 | MS.gene017761:CDS | 40.0% | |
| ATGCTTCAGTTTCTGTACAG+TGG | - | chr7.3:18995797-18995816 | MS.gene017761:CDS | 40.0% | |
| CATCAACTGTTCTCACATTC+GGG | + | chr7.3:18997912-18997931 | None:intergenic | 40.0% | |
| CCATCAACTGTTCTCACATT+CGG | + | chr7.3:18997913-18997932 | None:intergenic | 40.0% | |
| GAGATCTTAGTGAGTCTTCA+AGG | + | chr7.3:18995526-18995545 | None:intergenic | 40.0% | |
| GCTTGTGAAACTCATGGTAA+TGG | - | chr7.3:18997684-18997703 | MS.gene017761:CDS | 40.0% | |
| TAGGGTTCTTAGAATGTCCA+AGG | + | chr7.3:18997944-18997963 | None:intergenic | 40.0% | |
| TCAAGCAACAAACTGTGAAG+AGG | + | chr7.3:18996513-18996532 | None:intergenic | 40.0% | |
| TCGTAACCAACTGAGTTAAC+TGG | + | chr7.3:18995764-18995783 | None:intergenic | 40.0% | |
| TTCCCAAAAACCAGTAACTG+TGG | + | chr7.3:18996156-18996175 | None:intergenic | 40.0% | |
| TTCCTCAGAAACATGAACCT+AGG | - | chr7.3:18995834-18995853 | MS.gene017761:CDS | 40.0% | |
| TTGAAGACCAGAAAATCCGT+CGG | - | chr7.3:18997629-18997648 | MS.gene017761:CDS | 40.0% | |
| TTGGGAATTTCCACAGTTAC+TGG | - | chr7.3:18996143-18996162 | MS.gene017761:intron | 40.0% | |
| ! | ACCTGATTTTGCTACAAGGT+GGG | + | chr7.3:18997458-18997477 | None:intergenic | 40.0% |
| ! | AGAAGTTGTGAAAGCCTTGT+TGG | - | chr7.3:18997768-18997787 | MS.gene017761:CDS | 40.0% |
| ! | GAAGACCTGATTTTGCTACA+AGG | + | chr7.3:18997462-18997481 | None:intergenic | 40.0% |
| ! | TGTTTTGCAAGTACTTCTGG+GGG | + | chr7.3:18997484-18997503 | None:intergenic | 40.0% |
| ! | TTCAACTCCGAAGTATCTAG+CGG | + | chr7.3:18995936-18995955 | None:intergenic | 40.0% |
| !! | AAACTCATGGTAATGGGAGA+AGG | - | chr7.3:18997691-18997710 | MS.gene017761:CDS | 40.0% |
| !! | GATTTTCTGGTCTTCAAGGT+CGG | + | chr7.3:18997626-18997645 | None:intergenic | 40.0% |
| !!! | AGTTACTGGTTTTTGGGAAC+TGG | - | chr7.3:18996157-18996176 | MS.gene017761:intron | 40.0% |
| !!! | GTCGTATGTTTTTTGGGTCT+TGG | - | chr7.3:18996124-18996143 | MS.gene017761:CDS | 40.0% |
| !!! | GTGACCAGTCGTATGTTTTT+TGG | - | chr7.3:18996117-18996136 | MS.gene017761:CDS | 40.0% |
| !!! | GTTACTGGTTTTTGGGAACT+GGG | - | chr7.3:18996158-18996177 | MS.gene017761:intron | 40.0% |
| AACTCCGCTACATATTGCAG+CGG | - | chr7.3:18997837-18997856 | MS.gene017761:CDS | 45.0% | |
| ACAGAAACAACTAGCGAGCA+TGG | - | chr7.3:18997348-18997367 | MS.gene017761:intron | 45.0% | |
| AGCAATACAGCCACCATATC+CGG | + | chr7.3:18997874-18997893 | None:intergenic | 45.0% | |
| ATCTCCGCTGCAATATGTAG+CGG | + | chr7.3:18997844-18997863 | None:intergenic | 45.0% | |
| ATGGGTCTAATCCAGAAGGT+GGG | + | chr7.3:18995694-18995713 | None:intergenic | 45.0% | |
| CATGAACCTAGGCCTAATTG+TGG | - | chr7.3:18995845-18995864 | MS.gene017761:CDS | 45.0% | |
| CCGAATGTGAGAACAGTTGA+TGG | - | chr7.3:18997910-18997929 | MS.gene017761:CDS | 45.0% | |
| CTGCAATTCTCAACGGCATA+AGG | + | chr7.3:18997745-18997764 | None:intergenic | 45.0% | |
| CTTTCAGCCGCTAGATACTT+CGG | - | chr7.3:18995926-18995945 | MS.gene017761:CDS | 45.0% | |
| TCCCACCTTGTAGCAAAATC+AGG | - | chr7.3:18997454-18997473 | MS.gene017761:intron | 45.0% | |
| ! | GACCTGATTTTGCTACAAGG+TGG | + | chr7.3:18997459-18997478 | None:intergenic | 45.0% |
| ! | GATGCGAAGCTCTTCGATTT+TGG | + | chr7.3:18997527-18997546 | None:intergenic | 45.0% |
| !! | AGTTGATGGTGTTACACCCT+TGG | - | chr7.3:18997924-18997943 | MS.gene017761:CDS | 45.0% |
| !! | ATGATGGTGGTGAGGCATTA+AGG | + | chr7.3:18997572-18997591 | None:intergenic | 45.0% |
| !! | GACGGATTTTCTGGTCTTCA+AGG | + | chr7.3:18997630-18997649 | None:intergenic | 45.0% |
| !! | GTGAAAGCCTTGTTGGAACT+CGG | - | chr7.3:18997775-18997794 | MS.gene017761:CDS | 45.0% |
| !!! | ATTATTTTTTGTTAATTAAT+GGG | - | chr7.3:18996200-18996219 | MS.gene017761:intron | 5.0% |
| !!! | TATTATTTTTTGTTAATTAA+TGG | - | chr7.3:18996199-18996218 | MS.gene017761:intron | 5.0% |
| AACACCAGACCTAGCTGAAC+CGG | + | chr7.3:18995738-18995757 | None:intergenic | 50.0% | |
| AAGAGCAAGATCAACGGCTG+AGG | + | chr7.3:18995900-18995919 | None:intergenic | 50.0% | |
| ACAGCTTGCATTGCTCACTC+AGG | - | chr7.3:18995955-18995974 | MS.gene017761:CDS | 50.0% | |
| ACCAGCCGGGAAGTTAACAT+CGG | + | chr7.3:18997806-18997825 | None:intergenic | 50.0% | |
| ATTGTGGTGACCGTGGTTGT+TGG | - | chr7.3:18995861-18995880 | MS.gene017761:CDS | 50.0% | |
| CAACCACGGTCACCACAATT+AGG | + | chr7.3:18995860-18995879 | None:intergenic | 50.0% | |
| CATTAAGGAGCGGCGTGATA+AGG | + | chr7.3:18997557-18997576 | None:intergenic | 50.0% | |
| CGTCGAGCTTGTGAAACTCA+TGG | - | chr7.3:18997678-18997697 | MS.gene017761:CDS | 50.0% | |
| CTAAGATGCATCTGTGTGCG+TGG | + | chr7.3:18995628-18995647 | None:intergenic | 50.0% | |
| GAAACAACTAGCGAGCATGG+TGG | - | chr7.3:18997351-18997370 | MS.gene017761:intron | 50.0% | |
| GATGGGTCTAATCCAGAAGG+TGG | + | chr7.3:18995695-18995714 | None:intergenic | 50.0% | |
| GCTACATATTGCAGCGGAGA+TGG | - | chr7.3:18997843-18997862 | MS.gene017761:CDS | 50.0% | |
| GGGAACATGTGGTCCATAGT+TGG | + | chr7.3:18997438-18997457 | None:intergenic | 50.0% | |
| TCTAATCCAGAAGGTGGGTC+TGG | + | chr7.3:18995689-18995708 | None:intergenic | 50.0% | |
| TGCAGCCGATGTTAACTTCC+CGG | - | chr7.3:18997798-18997817 | MS.gene017761:CDS | 50.0% | |
| TGCTACAAGGTGGGAACATG+TGG | + | chr7.3:18997449-18997468 | None:intergenic | 50.0% | |
| TTTCACAAGCTCGACGTCTG+AGG | + | chr7.3:18997674-18997693 | None:intergenic | 50.0% | |
| ! | ACGCTTGTCCGTTGATGAGA+AGG | + | chr7.3:18995568-18995587 | None:intergenic | 50.0% |
| ! | CCTGATGGGTCTAATCCAGA+AGG | + | chr7.3:18995698-18995717 | None:intergenic | 50.0% |
| ! | CCTTCTGGATTAGACCCATC+AGG | - | chr7.3:18995695-18995714 | MS.gene017761:CDS | 50.0% |
| ! | GGCCTAGGTTCATGTTTCTG+AGG | + | chr7.3:18995839-18995858 | None:intergenic | 50.0% |
| !! | CTGGTTTTTGGGAACTGGGA+AGG | - | chr7.3:18996162-18996181 | MS.gene017761:intron | 50.0% |
| !! | GACGTTGTTTTCAGCGTCGA+AGG | - | chr7.3:18995593-18995612 | MS.gene017761:CDS | 50.0% |
| !! | GGTTGACTCGGTTTCCTGAT+GGG | + | chr7.3:18995712-18995731 | None:intergenic | 50.0% |
| !! | GTCTCATCCGACGGATTTTC+TGG | + | chr7.3:18997639-18997658 | None:intergenic | 50.0% |
| !! | TGTAGCGGAGTTTTACCCGT+TGG | + | chr7.3:18997829-18997848 | None:intergenic | 50.0% |
| AGGCCTAATTGTGGTGACCG+TGG | - | chr7.3:18995854-18995873 | MS.gene017761:CDS | 55.0% | |
| CAGACCTAGCTGAACCGGAT+GGG | + | chr7.3:18995733-18995752 | None:intergenic | 55.0% | |
| CGGTCACCACAATTAGGCCT+AGG | + | chr7.3:18995854-18995873 | None:intergenic | 55.0% | |
| CGTGCACTAGCTGACTGTGT+TGG | + | chr7.3:18996776-18996795 | None:intergenic | 55.0% | |
| GATGGTCTCACCGGATATGG+TGG | - | chr7.3:18997861-18997880 | MS.gene017761:CDS | 55.0% | |
| GGAAACCGAGTCAACCCATC+CGG | - | chr7.3:18995716-18995735 | MS.gene017761:CDS | 55.0% | |
| GGAGATGGTCTCACCGGATA+TGG | - | chr7.3:18997858-18997877 | MS.gene017761:CDS | 55.0% | |
| TAAGGAGCGGCGTGATAAGG+AGG | + | chr7.3:18997554-18997573 | None:intergenic | 55.0% | |
| TCAACCCATCCGGTTCAGCT+AGG | - | chr7.3:18995726-18995745 | MS.gene017761:CDS | 55.0% | |
| TCACATTCGGGTCAGCGTGA+TGG | + | chr7.3:18997900-18997919 | None:intergenic | 55.0% | |
| ! | CGTGATGGTGAGGATGATGG+TGG | + | chr7.3:18997585-18997604 | None:intergenic | 55.0% |
| ! | GGTCGTGATGGTGAGGATGA+TGG | + | chr7.3:18997588-18997607 | None:intergenic | 55.0% |
| ! | GGTGGTGAGGCATTAAGGAG+CGG | + | chr7.3:18997567-18997586 | None:intergenic | 55.0% |
| ! | GTGAGATGGTCGTGATGGTG+AGG | + | chr7.3:18997595-18997614 | None:intergenic | 55.0% |
| ! | GTTTTACCCGTTGGACCAGC+CGG | + | chr7.3:18997820-18997839 | None:intergenic | 55.0% |
| ! | TAACTTCCCGGCTGGTCCAA+CGG | - | chr7.3:18997810-18997829 | MS.gene017761:CDS | 55.0% |
| ! | TTTTACCCGTTGGACCAGCC+GGG | + | chr7.3:18997819-18997838 | None:intergenic | 55.0% |
| !! | CTGAACCGGATGGGTTGACT+CGG | + | chr7.3:18995724-18995743 | None:intergenic | 55.0% |
| !! | GGGTTGACTCGGTTTCCTGA+TGG | + | chr7.3:18995713-18995732 | None:intergenic | 55.0% |
| !! | TGGTGAGGATGATGGTGGTG+AGG | + | chr7.3:18997580-18997599 | None:intergenic | 55.0% |
| CAGCGGTGAGATGGTCGTGA+TGG | + | chr7.3:18997600-18997619 | None:intergenic | 60.0% | |
| CCAGACCTAGCTGAACCGGA+TGG | + | chr7.3:18995734-18995753 | None:intergenic | 60.0% | |
| CCATCCGGTTCAGCTAGGTC+TGG | - | chr7.3:18995731-18995750 | MS.gene017761:CDS | 60.0% | |
| CTCGACGTCTGAGGAGTCGA+GGG | + | chr7.3:18997665-18997684 | None:intergenic | 60.0% | |
| GCCGATGTTAACTTCCCGGC+TGG | - | chr7.3:18997802-18997821 | MS.gene017761:CDS | 60.0% | |
| GGCTGCACCGAGTTCCAACA+AGG | + | chr7.3:18997785-18997804 | None:intergenic | 60.0% | |
| GTCTTCAAGGTCGGCTGCAG+CGG | + | chr7.3:18997617-18997636 | None:intergenic | 60.0% | |
| TGCAGCGGAGATGGTCTCAC+CGG | - | chr7.3:18997852-18997871 | MS.gene017761:CDS | 60.0% | |
| ! | AACTTCCCGGCTGGTCCAAC+GGG | - | chr7.3:18997811-18997830 | MS.gene017761:CDS | 60.0% |
| CGAGGGCTCGTCTCATCCGA+CGG | + | chr7.3:18997648-18997667 | None:intergenic | 65.0% | |
| GCTCGACGTCTGAGGAGTCG+AGG | + | chr7.3:18997666-18997685 | None:intergenic | 65.0% | |
| TGTGGGCCAGACCCACCTTC+TGG | - | chr7.3:18995680-18995699 | MS.gene017761:CDS | 65.0% | |
| GGTCGGCTGCAGCGGTGAGA+TGG | + | chr7.3:18997609-18997628 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 18995518 | 18997985 | 18995518 | ID=MS.gene017761 |
| chr7.3 | mRNA | 18995518 | 18997985 | 18995518 | ID=MS.gene017761.t1;Parent=MS.gene017761 |
| chr7.3 | exon | 18997527 | 18997985 | 18997527 | ID=MS.gene017761.t1.exon1;Parent=MS.gene017761.t1 |
| chr7.3 | CDS | 18997527 | 18997985 | 18997527 | ID=cds.MS.gene017761.t1;Parent=MS.gene017761.t1 |
| chr7.3 | exon | 18995518 | 18996151 | 18995518 | ID=MS.gene017761.t1.exon2;Parent=MS.gene017761.t1 |
| chr7.3 | CDS | 18995518 | 18996151 | 18995518 | ID=cds.MS.gene017761.t1;Parent=MS.gene017761.t1 |
| Gene Sequence |
| Protein sequence |
