Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017764.t1 | XP_003625016.2 | 95 | 379 | 19 | 0 | 1 | 379 | 1 | 379 | 9.10E-208 | 732.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017764.t1 | F4K933 | 42.2 | 384 | 183 | 8 | 7 | 380 | 17 | 371 | 3.5e-75 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017764.t1 | G7KQU4 | 95.0 | 379 | 19 | 0 | 1 | 379 | 1 | 379 | 6.6e-208 | 732.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017764.t1 | TF | HRT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017764.t1 | MTR_7g090060 | 94.987 | 379 | 19 | 0 | 1 | 379 | 1 | 379 | 0.0 | 747 |
| MS.gene017764.t1 | MTR_6g092520 | 74.531 | 373 | 84 | 3 | 6 | 378 | 2 | 363 | 0.0 | 558 |
| MS.gene017764.t1 | MTR_6g092500 | 60.177 | 113 | 40 | 1 | 3 | 115 | 46 | 153 | 2.95e-41 | 143 |
| MS.gene017764.t1 | MTR_6g092480 | 44.715 | 123 | 42 | 1 | 125 | 247 | 9 | 105 | 5.13e-26 | 110 |
| MS.gene017764.t1 | MTR_6g092480 | 65.909 | 44 | 15 | 0 | 270 | 313 | 311 | 354 | 1.98e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017764.t1 | AT5G56780 | 42.051 | 390 | 187 | 9 | 1 | 380 | 11 | 371 | 1.12e-91 | 284 |
| MS.gene017764.t1 | AT5G56770 | 42.529 | 174 | 76 | 4 | 2 | 174 | 51 | 201 | 1.63e-35 | 130 |
Find 107 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAACCTTCCTCAGAAAT+TGG | 0.157069 | 7.4:+18709458 | MS.gene017764:CDS |
| CTACATCATGGCTGGCATTT+TGG | 0.209063 | 7.4:-18711003 | None:intergenic |
| AACGGGAAGGTCATTGTTTC+AGG | 0.214002 | 7.4:+18709680 | MS.gene017764:CDS |
| TTCTCCTCCCTTTATGTTCC+TGG | 0.242712 | 7.4:-18711153 | None:intergenic |
| GGCAGCTTGCTTGATTTAAT+TGG | 0.245613 | 7.4:-18710677 | None:intergenic |
| CCGATGGTTCTATTTGTAAA+AGG | 0.246592 | 7.4:+18710855 | MS.gene017764:CDS |
| AGCTGTGTCGCGTAGTAATC+TGG | 0.263388 | 7.4:+18709506 | MS.gene017764:CDS |
| GATTCCACATATAATGGTTT+TGG | 0.263571 | 7.4:-18711074 | None:intergenic |
| GCTTCCCAATTGTTTATAGA+TGG | 0.289991 | 7.4:+18709718 | MS.gene017764:CDS |
| TTGGTATCCCCACTTTCCTC+TGG | 0.290433 | 7.4:-18710658 | None:intergenic |
| CAAGATGATTCCACATATAA+TGG | 0.291500 | 7.4:-18711080 | None:intergenic |
| ATTCTCATTCCTTTGTGTTC+AGG | 0.303340 | 7.4:-18710905 | None:intergenic |
| TGTAGAAGACAACCGGTTAA+AGG | 0.332466 | 7.4:+18711118 | MS.gene017764:CDS |
| CTTGGGTGATCTGATTGCTT+TGG | 0.351144 | 7.4:-18710942 | None:intergenic |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | 7.4:+18709391 | MS.gene017764:CDS |
| GCATTGTAGGTAATGCTTAT+AGG | 0.363449 | 7.4:+18710978 | MS.gene017764:CDS |
| TCAGAATTAGAAAGCATTGT+AGG | 0.383504 | 7.4:+18710965 | MS.gene017764:CDS |
| GGTGAAAGGTAGAAGCAATT+TGG | 0.393179 | 7.4:-18710636 | None:intergenic |
| AAAAGGTGCCAGGAACATAA+AGG | 0.395561 | 7.4:+18711145 | MS.gene017764:CDS |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | 7.4:-18709723 | None:intergenic |
| AACCGGTTAAAGGAAGAAAA+AGG | 0.410668 | 7.4:+18711128 | MS.gene017764:CDS |
| CATGAGAATGCTAAAATTTG+CGG | 0.413022 | 7.4:+18710821 | MS.gene017764:CDS |
| CGCATAGTTGTGGTTTACCT+TGG | 0.426319 | 7.4:+18709564 | MS.gene017764:CDS |
| GCCTCTGACAGATGACAAAC+TGG | 0.430967 | 7.4:+18710697 | MS.gene017764:CDS |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | 7.4:+18709392 | MS.gene017764:CDS |
| CACAACCTTCCTCAGAAATT+GGG | 0.434094 | 7.4:+18709459 | MS.gene017764:CDS |
| CCCGTGTGTTCAAATTAAAC+AGG | 0.435752 | 7.4:+18710753 | MS.gene017764:CDS |
| GCAGCTGAGATTCTGTTCTC+AGG | 0.444652 | 7.4:-18710499 | None:intergenic |
| CATTATATGTGGAATCATCT+TGG | 0.451174 | 7.4:+18711081 | MS.gene017764:CDS |
| GTCACGTCCTAGGATAGTTC+AGG | 0.452457 | 7.4:+18710775 | MS.gene017764:CDS |
| GTGGAGGGTCTTCTACATCA+TGG | 0.463412 | 7.4:-18711015 | None:intergenic |
| CTTCCCAATTGTTTATAGAT+GGG | 0.464946 | 7.4:+18709719 | MS.gene017764:CDS |
| GGGTGATCTGATTGCTTTGG+CGG | 0.466767 | 7.4:-18710939 | None:intergenic |
| AGAGCAAGACTCCAGCGTTA+TGG | 0.467691 | 7.4:+18709603 | MS.gene017764:CDS |
| CCTTCCTCAGAAATTGGGTC+CGG | 0.470635 | 7.4:+18709464 | MS.gene017764:CDS |
| TGACTCTTAACCATTCTTTG+TGG | 0.474955 | 7.4:-18711034 | None:intergenic |
| GGAAGACTATTCCAAAGAAA+AGG | 0.474965 | 7.4:+18709413 | MS.gene017764:CDS |
| AAGGTTGTGAATCCTGTATC+TGG | 0.479106 | 7.4:-18709445 | None:intergenic |
| AGCATTTGAAGAATATCATC+AGG | 0.489085 | 7.4:-18710572 | None:intergenic |
| AGGAAGGATCTACCAGATAC+AGG | 0.491164 | 7.4:+18709433 | MS.gene017764:CDS |
| AATTAAACAGGTCACGTCCT+AGG | 0.491462 | 7.4:+18710765 | MS.gene017764:CDS |
| ATGCTCAACAAATTAGCTTC+AGG | 0.496009 | 7.4:+18710590 | MS.gene017764:CDS |
| CTCCAGCGTTATGGCAGGAA+TGG | 0.496259 | 7.4:+18709612 | MS.gene017764:CDS |
| TGGCAAGCTTGTAAATTTCA+CGG | 0.499268 | 7.4:-18709530 | None:intergenic |
| CTTCCTCAGAAATTGGGTCC+GGG | 0.499654 | 7.4:+18709465 | MS.gene017764:CDS |
| CCCACTTTCCTCTGGGTGAA+AGG | 0.500019 | 7.4:-18710650 | None:intergenic |
| AATGCTTTCTAATTCTGACT+TGG | 0.501548 | 7.4:-18710960 | None:intergenic |
| TGGTATCCCCACTTTCCTCT+GGG | 0.502512 | 7.4:-18710657 | None:intergenic |
| ATGCTTTCTAATTCTGACTT+GGG | 0.502963 | 7.4:-18710959 | None:intergenic |
| TCTTAACCATTCTTTGTGGA+GGG | 0.504208 | 7.4:-18711030 | None:intergenic |
| CTCTTAACCATTCTTTGTGG+AGG | 0.504735 | 7.4:-18711031 | None:intergenic |
| ATCCACTTGTAGAAGACAAC+CGG | 0.506149 | 7.4:+18711111 | MS.gene017764:CDS |
| AGAAGACCCTCCACAAAGAA+TGG | 0.506283 | 7.4:+18711024 | MS.gene017764:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.508603 | 7.4:-18709722 | None:intergenic |
| TTCTATTTGTAAAAGGCCAC+CGG | 0.517076 | 7.4:+18710862 | MS.gene017764:CDS |
| ACCTGTTTAATTTGAACACA+CGG | 0.522258 | 7.4:-18710754 | None:intergenic |
| GTGGTATCCTGAACTATCCT+AGG | 0.522643 | 7.4:-18710782 | None:intergenic |
| GATGACTCTTCTCTACGAAC+GGG | 0.523910 | 7.4:+18709663 | MS.gene017764:CDS |
| AGGGTCTTCTACATCATGGC+TGG | 0.525907 | 7.4:-18711011 | None:intergenic |
| AACCGGTTGTCTTCTACAAG+TGG | 0.530917 | 7.4:-18711113 | None:intergenic |
| ATCGCCAAAACCATTATATG+TGG | 0.534440 | 7.4:+18711070 | MS.gene017764:CDS |
| TTAGTACATTTGATTATGCA+TGG | 0.537544 | 7.4:+18710522 | MS.gene017764:CDS |
| AAAGGTGCCAGGAACATAAA+GGG | 0.538956 | 7.4:+18711146 | MS.gene017764:CDS |
| ACCTTTCACCCAGAGGAAAG+TGG | 0.539145 | 7.4:+18710649 | MS.gene017764:CDS |
| TGTGGAATCATCTTGGATGA+TGG | 0.539642 | 7.4:+18711088 | MS.gene017764:CDS |
| CAGCTGAGATTCTGTTCTCA+GGG | 0.541120 | 7.4:-18710498 | None:intergenic |
| CCTTTCACCCAGAGGAAAGT+GGG | 0.542001 | 7.4:+18710650 | MS.gene017764:CDS |
| ATGATTCTAGCTTCTCCCAC+TGG | 0.543441 | 7.4:+18708651 | MS.gene017764:CDS |
| TGACCCTCGTCGCATAGTTG+TGG | 0.547054 | 7.4:+18709554 | MS.gene017764:CDS |
| ACTCCAAGCTCGTACACCCC+CGG | 0.547377 | 7.4:-18709483 | None:intergenic |
| TTAATTTGAACACACGGGAT+AGG | 0.547956 | 7.4:-18710748 | None:intergenic |
| CAAGACTCCAGCGTTATGGC+AGG | 0.554748 | 7.4:+18709607 | MS.gene017764:CDS |
| CTCCATTCCTGCCATAACGC+TGG | 0.555122 | 7.4:-18709614 | None:intergenic |
| GCTGTGTCGCGTAGTAATCT+GGG | 0.557788 | 7.4:+18709507 | MS.gene017764:CDS |
| TTCCTCAGAAATTGGGTCCG+GGG | 0.559029 | 7.4:+18709466 | MS.gene017764:CDS |
| TAAAATTTGCGGAGTGATGT+TGG | 0.559942 | 7.4:+18710832 | MS.gene017764:CDS |
| TTCTAGCTTCTCCCACTGGA+AGG | 0.570084 | 7.4:+18708655 | MS.gene017764:CDS |
| GAATAGTCTTCCCAATCAGA+AGG | 0.574116 | 7.4:-18709402 | None:intergenic |
| CCGGACCCAATTTCTGAGGA+AGG | 0.577737 | 7.4:-18709464 | None:intergenic |
| GGTCGTCAACAGATTGAAGC+GGG | 0.577925 | 7.4:+18708607 | MS.gene017764:CDS |
| AGATGACTCTTCTCTACGAA+CGG | 0.578063 | 7.4:+18709662 | MS.gene017764:CDS |
| TCCTCAGAAATTGGGTCCGG+GGG | 0.579255 | 7.4:+18709467 | MS.gene017764:CDS |
| TGCGGAGTGATGTTGGCCGA+TGG | 0.582561 | 7.4:+18710839 | MS.gene017764:CDS |
| AACTATGCGACGAGGGTCAG+TGG | 0.584771 | 7.4:-18709550 | None:intergenic |
| CCTGTTTAATTTGAACACAC+GGG | 0.590009 | 7.4:-18710753 | None:intergenic |
| AGGATAGTTCAGGATACCAC+TGG | 0.597133 | 7.4:+18710785 | MS.gene017764:CDS |
| TGATCTGATTGCTTTGGCGG+CGG | 0.601310 | 7.4:-18710936 | None:intergenic |
| TCCAGTTTGTCATCTGTCAG+AGG | 0.601705 | 7.4:-18710698 | None:intergenic |
| TGCTTCTACCTTTCACCCAG+AGG | 0.610412 | 7.4:+18710642 | MS.gene017764:CDS |
| GACTATTCCAAAGAAAAGGA+AGG | 0.610651 | 7.4:+18709417 | MS.gene017764:CDS |
| ACACAATCAGCAATGGTACA+CGG | 0.630313 | 7.4:+18710546 | MS.gene017764:CDS |
| GCATGGAACACAATCAGCAA+TGG | 0.645734 | 7.4:+18710539 | MS.gene017764:CDS |
| TGGTCGTCAACAGATTGAAG+CGG | 0.649124 | 7.4:+18708606 | MS.gene017764:CDS |
| TATTGAACAGATGCAAAACG+AGG | 0.650690 | 7.4:+18710469 | MS.gene017764:intron |
| AATTGATATGAACCTTCCAG+TGG | 0.655241 | 7.4:-18708667 | None:intergenic |
| ATTGATATGAACCTTCCAGT+GGG | 0.662855 | 7.4:-18708666 | None:intergenic |
| ATGAGTGGCACTACCACCAG+TGG | 0.671537 | 7.4:-18710801 | None:intergenic |
| ACTCTTCTCTACGAACGGGA+AGG | 0.673197 | 7.4:+18709667 | MS.gene017764:CDS |
| CTTTCACCCAGAGGAAAGTG+GGG | 0.681368 | 7.4:+18710651 | MS.gene017764:CDS |
| ATTGAACAGATGCAAAACGA+GGG | 0.682609 | 7.4:+18710470 | MS.gene017764:intron |
| AAACCACAACTATGCGACGA+GGG | 0.687191 | 7.4:-18709557 | None:intergenic |
| ATAGTTCAGGATACCACTGG+TGG | 0.705856 | 7.4:+18710788 | MS.gene017764:CDS |
| GTGAGGTGTCCTGAACACAA+AGG | 0.719035 | 7.4:+18710896 | MS.gene017764:CDS |
| TAAACCACAACTATGCGACG+AGG | 0.730870 | 7.4:-18709558 | None:intergenic |
| GGTGCCAGGAACATAAAGGG+AGG | 0.732457 | 7.4:+18711149 | MS.gene017764:CDS |
| AAACTGGATGAAGCTGACAG+TGG | 0.772229 | 7.4:+18710713 | MS.gene017764:CDS |
| CAATCAGCAATGGTACACGG+CGG | 0.806089 | 7.4:+18710549 | MS.gene017764:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTATTTGGTTAT+TGG | + | chr7.4:18709005-18709024 | MS.gene017764:intron | 10.0% |
| !!! | GAACAAGATATTTTTTTATT+TGG | + | chr7.4:18708998-18709017 | MS.gene017764:intron | 15.0% |
| !!! | TATATAAAAGTGCAATTTTT+TGG | + | chr7.4:18710415-18710434 | MS.gene017764:intron | 15.0% |
| !! | ATTTCAAAAAAGTCATTGAT+TGG | + | chr7.4:18709849-18709868 | MS.gene017764:intron | 20.0% |
| !! | CTTAGTTGTTAACTATAATA+TGG | - | chr7.4:18709247-18709266 | None:intergenic | 20.0% |
| !!! | AAATTGAAAGCTTTAAAAAG+TGG | - | chr7.4:18708889-18708908 | None:intergenic | 20.0% |
| !!! | TTCCATTTAGATAATTTTCT+GGG | + | chr7.4:18708860-18708879 | MS.gene017764:intron | 20.0% |
| ! | AATATCAGATATGTACTTAC+AGG | - | chr7.4:18709747-18709766 | None:intergenic | 25.0% |
| ! | ACCTAAATTACATAGATTTC+AGG | - | chr7.4:18709986-18710005 | None:intergenic | 25.0% |
| ! | CAGAAAATTATCTAAATGGA+AGG | - | chr7.4:18708861-18708880 | None:intergenic | 25.0% |
| ! | GAATTATCATAATAGACTAG+TGG | - | chr7.4:18710283-18710302 | None:intergenic | 25.0% |
| ! | TTAGTACATTTGATTATGCA+TGG | + | chr7.4:18710522-18710541 | MS.gene017764:CDS | 25.0% |
| !! | AAAAGCTATTGATTGTATGA+TGG | + | chr7.4:18708921-18708940 | MS.gene017764:intron | 25.0% |
| !! | AACCCAATTCCATTTTAAAT+GGG | + | chr7.4:18710127-18710146 | MS.gene017764:intron | 25.0% |
| !! | AACTGTTTTCAGATTCTTAT+TGG | + | chr7.4:18709378-18709397 | MS.gene017764:intron | 25.0% |
| !! | CACTAAAAGAATGAAGTATT+AGG | - | chr7.4:18708817-18708836 | None:intergenic | 25.0% |
| !! | CTTCCATTTAGATAATTTTC+TGG | + | chr7.4:18708859-18708878 | MS.gene017764:intron | 25.0% |
| !! | TAACCCAATTCCATTTTAAA+TGG | + | chr7.4:18710126-18710145 | MS.gene017764:intron | 25.0% |
| !! | TAGTTTTCGTCATTCTATTA+TGG | - | chr7.4:18709298-18709317 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTGGAACTATAA+TGG | + | chr7.4:18710426-18710445 | MS.gene017764:intron | 25.0% |
| AAAACTGGACCCATTTAAAA+TGG | - | chr7.4:18710139-18710158 | None:intergenic | 30.0% | |
| AAGCGACACAATCAAAATTT+AGG | + | chr7.4:18710220-18710239 | MS.gene017764:intron | 30.0% | |
| AATGCTTTCTAATTCTGACT+TGG | - | chr7.4:18710963-18710982 | None:intergenic | 30.0% | |
| AATTAGCAGTGCTCATTTAA+AGG | + | chr7.4:18709960-18709979 | MS.gene017764:intron | 30.0% | |
| AATTCATAGCTTAAGAATGG+AGG | - | chr7.4:18709944-18709963 | None:intergenic | 30.0% | |
| ACGTTATCATATGATAGTAC+AGG | + | chr7.4:18709878-18709897 | MS.gene017764:intron | 30.0% | |
| AGCATTTGAAGAATATCATC+AGG | - | chr7.4:18710575-18710594 | None:intergenic | 30.0% | |
| AGCCCAGAAAATTATCTAAA+TGG | - | chr7.4:18708865-18708884 | None:intergenic | 30.0% | |
| ATGCTTTCTAATTCTGACTT+GGG | - | chr7.4:18710962-18710981 | None:intergenic | 30.0% | |
| CAAAATCTACTGTTGATATG+TGG | + | chr7.4:18710339-18710358 | MS.gene017764:intron | 30.0% | |
| CAAGATGATTCCACATATAA+TGG | - | chr7.4:18711083-18711102 | None:intergenic | 30.0% | |
| CATGAGAATGCTAAAATTTG+CGG | + | chr7.4:18710821-18710840 | MS.gene017764:CDS | 30.0% | |
| CATTATATGTGGAATCATCT+TGG | + | chr7.4:18711081-18711100 | MS.gene017764:CDS | 30.0% | |
| CGTTATCATATGATAGTACA+GGG | + | chr7.4:18709879-18709898 | MS.gene017764:intron | 30.0% | |
| CTCAAATAAACACACATACA+CGG | + | chr7.4:18709046-18709065 | MS.gene017764:intron | 30.0% | |
| CTTCCCAATTGTTTATAGAT+GGG | + | chr7.4:18709719-18709738 | MS.gene017764:CDS | 30.0% | |
| GCCTGAAATCTATGTAATTT+AGG | + | chr7.4:18709982-18710001 | MS.gene017764:intron | 30.0% | |
| GCTAATTCATAGCTTAAGAA+TGG | - | chr7.4:18709947-18709966 | None:intergenic | 30.0% | |
| TCAAATAAACACACATACAC+GGG | + | chr7.4:18709047-18709066 | MS.gene017764:intron | 30.0% | |
| TTCTTTCAACTGTACAAATC+TGG | + | chr7.4:18709319-18709338 | MS.gene017764:intron | 30.0% | |
| ! | CAAAATTTAGGACAAGGTTA+GGG | + | chr7.4:18710232-18710251 | MS.gene017764:intron | 30.0% |
| ! | CACAATCAAAATTTAGGACA+AGG | + | chr7.4:18710226-18710245 | MS.gene017764:intron | 30.0% |
| ! | CCTTTTACAAATAGAACCAT+CGG | - | chr7.4:18710858-18710877 | None:intergenic | 30.0% |
| ! | GAAGTATTAGGCTTTACTTT+AGG | - | chr7.4:18708805-18708824 | None:intergenic | 30.0% |
| ! | GACCCATTTAAAATGGAATT+GGG | - | chr7.4:18710132-18710151 | None:intergenic | 30.0% |
| ! | GATTCCACATATAATGGTTT+TGG | - | chr7.4:18711077-18711096 | None:intergenic | 30.0% |
| ! | TCAAAATTTAGGACAAGGTT+AGG | + | chr7.4:18710231-18710250 | MS.gene017764:intron | 30.0% |
| ! | TTAATGTTTCTACGATTCTG+TGG | + | chr7.4:18708739-18708758 | MS.gene017764:intron | 30.0% |
| ! | TTTCAGGAGATATTTTCACA+AGG | + | chr7.4:18709696-18709715 | MS.gene017764:CDS | 30.0% |
| !! | AATTTTAGCATTCTCATGAG+TGG | - | chr7.4:18710819-18710838 | None:intergenic | 30.0% |
| !! | ACCTGTTTAATTTGAACACA+CGG | - | chr7.4:18710757-18710776 | None:intergenic | 30.0% |
| !! | AGCTAGAATCATGTTTTGTT+CGG | - | chr7.4:18708643-18708662 | None:intergenic | 30.0% |
| !! | TCAGAATTAGAAAGCATTGT+AGG | + | chr7.4:18710965-18710984 | MS.gene017764:CDS | 30.0% |
| !! | TTCAGTTCTAGAGATATGTT+AGG | + | chr7.4:18710191-18710210 | MS.gene017764:intron | 30.0% |
| !! | TTTTTATTTGGTTATTGGCC+CGG | + | chr7.4:18709010-18709029 | MS.gene017764:intron | 30.0% |
| !!! | AATTTTGATTGTGTCGCTTT+TGG | - | chr7.4:18710219-18710238 | None:intergenic | 30.0% |
| AACCGGTTAAAGGAAGAAAA+AGG | + | chr7.4:18711128-18711147 | MS.gene017764:CDS | 35.0% | |
| AATTGATATGAACCTTCCAG+TGG | - | chr7.4:18708670-18708689 | None:intergenic | 35.0% | |
| ATCGCCAAAACCATTATATG+TGG | + | chr7.4:18711070-18711089 | MS.gene017764:CDS | 35.0% | |
| ATTCTCATTCCTTTGTGTTC+AGG | - | chr7.4:18710908-18710927 | None:intergenic | 35.0% | |
| ATTGAACAGATGCAAAACGA+GGG | + | chr7.4:18710470-18710489 | MS.gene017764:intron | 35.0% | |
| ATTGATATGAACCTTCCAGT+GGG | - | chr7.4:18708669-18708688 | None:intergenic | 35.0% | |
| CAAATAAACACACATACACG+GGG | + | chr7.4:18709048-18709067 | MS.gene017764:intron | 35.0% | |
| GACTATTCCAAAGAAAAGGA+AGG | + | chr7.4:18709417-18709436 | MS.gene017764:CDS | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | - | chr7.4:18709725-18709744 | None:intergenic | 35.0% | |
| GCATTGTAGGTAATGCTTAT+AGG | + | chr7.4:18710978-18710997 | MS.gene017764:CDS | 35.0% | |
| GCTTCCCAATTGTTTATAGA+TGG | + | chr7.4:18709718-18709737 | MS.gene017764:CDS | 35.0% | |
| GGAAGACTATTCCAAAGAAA+AGG | + | chr7.4:18709413-18709432 | MS.gene017764:CDS | 35.0% | |
| GTGTTTATTTGAGCATGTGT+TGG | - | chr7.4:18709039-18709058 | None:intergenic | 35.0% | |
| GTTACCTTCTTACCTTGATT+TGG | + | chr7.4:18709341-18709360 | MS.gene017764:intron | 35.0% | |
| TAAAATTTGCGGAGTGATGT+TGG | + | chr7.4:18710832-18710851 | MS.gene017764:CDS | 35.0% | |
| TAGTACAGGGTATAACTCAA+AGG | + | chr7.4:18709892-18709911 | MS.gene017764:intron | 35.0% | |
| TATTGAACAGATGCAAAACG+AGG | + | chr7.4:18710469-18710488 | MS.gene017764:intron | 35.0% | |
| TCTATACCTAATGTCTCTGA+TGG | + | chr7.4:18710312-18710331 | MS.gene017764:intron | 35.0% | |
| TCTTAACCATTCTTTGTGGA+GGG | - | chr7.4:18711033-18711052 | None:intergenic | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | + | chr7.4:18709392-18709411 | MS.gene017764:CDS | 35.0% | |
| TGAATTCCATCAGAGACATT+AGG | - | chr7.4:18710321-18710340 | None:intergenic | 35.0% | |
| TGACTCTTAACCATTCTTTG+TGG | - | chr7.4:18711037-18711056 | None:intergenic | 35.0% | |
| TGGCAAGCTTGTAAATTTCA+CGG | - | chr7.4:18709533-18709552 | None:intergenic | 35.0% | |
| TTCTATTTGTAAAAGGCCAC+CGG | + | chr7.4:18710862-18710881 | MS.gene017764:CDS | 35.0% | |
| TTCTTATTGGTCCTTCTGAT+TGG | + | chr7.4:18709391-18709410 | MS.gene017764:CDS | 35.0% | |
| ! | ACTATTAGCTTCAGCATCTT+AGG | + | chr7.4:18709823-18709842 | MS.gene017764:intron | 35.0% |
| ! | AGGGTATAACTCAAAGGTTT+TGG | + | chr7.4:18709898-18709917 | MS.gene017764:intron | 35.0% |
| ! | ATGCTCAACAAATTAGCTTC+AGG | + | chr7.4:18710590-18710609 | MS.gene017764:CDS | 35.0% |
| ! | CACCTTTTTCTTCCTTTAAC+CGG | - | chr7.4:18711133-18711152 | None:intergenic | 35.0% |
| ! | CACTAGAACATTTTCAGATG+TGG | + | chr7.4:18710613-18710632 | MS.gene017764:CDS | 35.0% |
| ! | CCGATGGTTCTATTTGTAAA+AGG | + | chr7.4:18710855-18710874 | MS.gene017764:CDS | 35.0% |
| ! | GGACCCATTTAAAATGGAAT+TGG | - | chr7.4:18710133-18710152 | None:intergenic | 35.0% |
| ! | GTGTCGCATTTTACGAAATT+TGG | + | chr7.4:18710361-18710380 | MS.gene017764:intron | 35.0% |
| ! | TTAATTTGAACACACGGGAT+AGG | - | chr7.4:18710751-18710770 | None:intergenic | 35.0% |
| !! | CCTGTTTAATTTGAACACAC+GGG | - | chr7.4:18710756-18710775 | None:intergenic | 35.0% |
| AACCCAATACACAGCACTAA+AGG | - | chr7.4:18710169-18710188 | None:intergenic | 40.0% | |
| AAGGTTGTGAATCCTGTATC+TGG | - | chr7.4:18709448-18709467 | None:intergenic | 40.0% | |
| AATTAAACAGGTCACGTCCT+AGG | + | chr7.4:18710765-18710784 | MS.gene017764:CDS | 40.0% | |
| ACACAATCAGCAATGGTACA+CGG | + | chr7.4:18710546-18710565 | MS.gene017764:CDS | 40.0% | |
| ACCACTAGACTGTAATAGCA+AGG | + | chr7.4:18709134-18709153 | MS.gene017764:intron | 40.0% | |
| ACTAAAGGCCAAAGCAAAAC+TGG | - | chr7.4:18710154-18710173 | None:intergenic | 40.0% | |
| AGATGACTCTTCTCTACGAA+CGG | + | chr7.4:18709662-18709681 | MS.gene017764:CDS | 40.0% | |
| ATCCACTTGTAGAAGACAAC+CGG | + | chr7.4:18711111-18711130 | MS.gene017764:CDS | 40.0% | |
| CACAACCTTCCTCAGAAATT+GGG | + | chr7.4:18709459-18709478 | MS.gene017764:CDS | 40.0% | |
| CCCGTGTGTTCAAATTAAAC+AGG | + | chr7.4:18710753-18710772 | MS.gene017764:CDS | 40.0% | |
| CTCTTAACCATTCTTTGTGG+AGG | - | chr7.4:18711034-18711053 | None:intergenic | 40.0% | |
| GAATAGTCTTCCCAATCAGA+AGG | - | chr7.4:18709405-18709424 | None:intergenic | 40.0% | |
| GCAACCAAATCAAGGTAAGA+AGG | - | chr7.4:18709348-18709367 | None:intergenic | 40.0% | |
| GCTATTACAGTCTAGTGGTT+TGG | - | chr7.4:18709133-18709152 | None:intergenic | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | - | chr7.4:18709726-18709745 | None:intergenic | 40.0% | |
| GGTGAAAGGTAGAAGCAATT+TGG | - | chr7.4:18710639-18710658 | None:intergenic | 40.0% | |
| TAACACGAGCAACCAAATCA+AGG | - | chr7.4:18709356-18709375 | None:intergenic | 40.0% | |
| TCACAACCTTCCTCAGAAAT+TGG | + | chr7.4:18709458-18709477 | MS.gene017764:CDS | 40.0% | |
| TGTAGAAGACAACCGGTTAA+AGG | + | chr7.4:18711118-18711137 | MS.gene017764:CDS | 40.0% | |
| TGTGGAATCATCTTGGATGA+TGG | + | chr7.4:18711088-18711107 | MS.gene017764:CDS | 40.0% | |
| ! | AAATGGGTCCAGTTTTGCTT+TGG | + | chr7.4:18710143-18710162 | MS.gene017764:intron | 40.0% |
| ! | GGCAGCTTGCTTGATTTAAT+TGG | - | chr7.4:18710680-18710699 | None:intergenic | 40.0% |
| ! | GGTAGATCCTTCCTTTTCTT+TGG | - | chr7.4:18709427-18709446 | None:intergenic | 40.0% |
| ! | TCACATTGTCAGCTTTTCCA+AGG | - | chr7.4:18709584-18709603 | None:intergenic | 40.0% |
| !! | AAAAGGTGCCAGGAACATAA+AGG | + | chr7.4:18711145-18711164 | MS.gene017764:CDS | 40.0% |
| !! | AAAGGTGCCAGGAACATAAA+GGG | + | chr7.4:18711146-18711165 | MS.gene017764:CDS | 40.0% |
| !! | TAAAGGAAGAAAAAGGTGCC+AGG | + | chr7.4:18711135-18711154 | MS.gene017764:CDS | 40.0% |
| !! | TCCTTGCTATTACAGTCTAG+TGG | - | chr7.4:18709138-18709157 | None:intergenic | 40.0% |
| !!! | CACCTCACTCTTTTTTCAAC+CGG | - | chr7.4:18710884-18710903 | None:intergenic | 40.0% |
| AAACCACAACTATGCGACGA+GGG | - | chr7.4:18709560-18709579 | None:intergenic | 45.0% | |
| AAACTGGATGAAGCTGACAG+TGG | + | chr7.4:18710713-18710732 | MS.gene017764:CDS | 45.0% | |
| AACCGGTTGTCTTCTACAAG+TGG | - | chr7.4:18711116-18711135 | None:intergenic | 45.0% | |
| AACGGGAAGGTCATTGTTTC+AGG | + | chr7.4:18709680-18709699 | MS.gene017764:CDS | 45.0% | |
| AGAAGACCCTCCACAAAGAA+TGG | + | chr7.4:18711024-18711043 | MS.gene017764:CDS | 45.0% | |
| AGGAAGGATCTACCAGATAC+AGG | + | chr7.4:18709433-18709452 | MS.gene017764:CDS | 45.0% | |
| AGGATAGTTCAGGATACCAC+TGG | + | chr7.4:18710785-18710804 | MS.gene017764:CDS | 45.0% | |
| ATAAACACACATACACGGGG+AGG | + | chr7.4:18709051-18709070 | MS.gene017764:intron | 45.0% | |
| ATAGTTCAGGATACCACTGG+TGG | + | chr7.4:18710788-18710807 | MS.gene017764:CDS | 45.0% | |
| CAGCTGAGATTCTGTTCTCA+GGG | - | chr7.4:18710501-18710520 | None:intergenic | 45.0% | |
| CGCATAGTTGTGGTTTACCT+TGG | + | chr7.4:18709564-18709583 | MS.gene017764:CDS | 45.0% | |
| CTTGGGTGATCTGATTGCTT+TGG | - | chr7.4:18710945-18710964 | None:intergenic | 45.0% | |
| GACATTTAACCTGGAATCCC+AGG | - | chr7.4:18709103-18709122 | None:intergenic | 45.0% | |
| GATGACTCTTCTCTACGAAC+GGG | + | chr7.4:18709663-18709682 | MS.gene017764:CDS | 45.0% | |
| GCATGGAACACAATCAGCAA+TGG | + | chr7.4:18710539-18710558 | MS.gene017764:CDS | 45.0% | |
| GGCCTTTAGTGCTGTGTATT+GGG | + | chr7.4:18710164-18710183 | MS.gene017764:intron | 45.0% | |
| GGCTTTACTTTAGGCATCAC+TGG | - | chr7.4:18708796-18708815 | None:intergenic | 45.0% | |
| GTGGTATCCTGAACTATCCT+AGG | - | chr7.4:18710785-18710804 | None:intergenic | 45.0% | |
| TAAACACACATACACGGGGA+GGG | + | chr7.4:18709052-18709071 | MS.gene017764:intron | 45.0% | |
| TAAACCACAACTATGCGACG+AGG | - | chr7.4:18709561-18709580 | None:intergenic | 45.0% | |
| TCCAGTTTGTCATCTGTCAG+AGG | - | chr7.4:18710701-18710720 | None:intergenic | 45.0% | |
| TGGCCTTTAGTGCTGTGTAT+TGG | + | chr7.4:18710163-18710182 | MS.gene017764:intron | 45.0% | |
| TGGTCGTCAACAGATTGAAG+CGG | + | chr7.4:18708606-18708625 | MS.gene017764:CDS | 45.0% | |
| TTATTTGGTTATTGGCCCGG+TGG | + | chr7.4:18709013-18709032 | MS.gene017764:intron | 45.0% | |
| TTCTCCTCCCTTTATGTTCC+TGG | - | chr7.4:18711156-18711175 | None:intergenic | 45.0% | |
| ! | CACCGGTTGAAAAAAGAGTG+AGG | + | chr7.4:18710879-18710898 | MS.gene017764:CDS | 45.0% |
| ! | CTACATCATGGCTGGCATTT+TGG | - | chr7.4:18711006-18711025 | None:intergenic | 45.0% |
| ! | TGATGGCGTAGTGCTTAAAG+AGG | + | chr7.4:18708938-18708957 | MS.gene017764:intron | 45.0% |
| !! | AGTCTAGTGGTTTGGCTTTG+AGG | - | chr7.4:18709125-18709144 | None:intergenic | 45.0% |
| !! | ATGATTCTAGCTTCTCCCAC+TGG | + | chr7.4:18708651-18708670 | MS.gene017764:CDS | 45.0% |
| !! | GGCTTTGAGGACATTTAACC+TGG | - | chr7.4:18709112-18709131 | None:intergenic | 45.0% |
| !!! | CTCACTCTTTTTTCAACCGG+TGG | - | chr7.4:18710881-18710900 | None:intergenic | 45.0% |
| AAACACACATACACGGGGAG+GGG | + | chr7.4:18709053-18709072 | MS.gene017764:intron | 50.0% | |
| ACCTTTCACCCAGAGGAAAG+TGG | + | chr7.4:18710649-18710668 | MS.gene017764:CDS | 50.0% | |
| ACTAGTGGCAAGCAAGAGAC+GGG | - | chr7.4:18710268-18710287 | None:intergenic | 50.0% | |
| ACTCTTCTCTACGAACGGGA+AGG | + | chr7.4:18709667-18709686 | MS.gene017764:CDS | 50.0% | |
| AGAGCAAGACTCCAGCGTTA+TGG | + | chr7.4:18709603-18709622 | MS.gene017764:CDS | 50.0% | |
| AGCTGTGTCGCGTAGTAATC+TGG | + | chr7.4:18709506-18709525 | MS.gene017764:CDS | 50.0% | |
| AGGGTCTTCTACATCATGGC+TGG | - | chr7.4:18711014-18711033 | None:intergenic | 50.0% | |
| CAATCAGCAATGGTACACGG+CGG | + | chr7.4:18710549-18710568 | MS.gene017764:CDS | 50.0% | |
| CCTTCCTCAGAAATTGGGTC+CGG | + | chr7.4:18709464-18709483 | MS.gene017764:CDS | 50.0% | |
| CCTTTCACCCAGAGGAAAGT+GGG | + | chr7.4:18710650-18710669 | MS.gene017764:CDS | 50.0% | |
| CTTCCTCAGAAATTGGGTCC+GGG | + | chr7.4:18709465-18709484 | MS.gene017764:CDS | 50.0% | |
| CTTTCACCCAGAGGAAAGTG+GGG | + | chr7.4:18710651-18710670 | MS.gene017764:CDS | 50.0% | |
| GACTAGTGGCAAGCAAGAGA+CGG | - | chr7.4:18710269-18710288 | None:intergenic | 50.0% | |
| GCAGCTGAGATTCTGTTCTC+AGG | - | chr7.4:18710502-18710521 | None:intergenic | 50.0% | |
| GCCTCTGACAGATGACAAAC+TGG | + | chr7.4:18710697-18710716 | MS.gene017764:CDS | 50.0% | |
| GCTGTGTCGCGTAGTAATCT+GGG | + | chr7.4:18709507-18709526 | MS.gene017764:CDS | 50.0% | |
| GGGTGATCTGATTGCTTTGG+CGG | - | chr7.4:18710942-18710961 | None:intergenic | 50.0% | |
| GGTCGTCAACAGATTGAAGC+GGG | + | chr7.4:18708607-18708626 | MS.gene017764:CDS | 50.0% | |
| GTCACGTCCTAGGATAGTTC+AGG | + | chr7.4:18710775-18710794 | MS.gene017764:CDS | 50.0% | |
| GTGGAGGGTCTTCTACATCA+TGG | - | chr7.4:18711018-18711037 | None:intergenic | 50.0% | |
| TGATCTGATTGCTTTGGCGG+CGG | - | chr7.4:18710939-18710958 | None:intergenic | 50.0% | |
| TGCTTCTACCTTTCACCCAG+AGG | + | chr7.4:18710642-18710661 | MS.gene017764:CDS | 50.0% | |
| TGGTATCCCCACTTTCCTCT+GGG | - | chr7.4:18710660-18710679 | None:intergenic | 50.0% | |
| TTCCTCAGAAATTGGGTCCG+GGG | + | chr7.4:18709466-18709485 | MS.gene017764:CDS | 50.0% | |
| TTGGTATCCCCACTTTCCTC+TGG | - | chr7.4:18710661-18710680 | None:intergenic | 50.0% | |
| ! | GTGAGGTGTCCTGAACACAA+AGG | + | chr7.4:18710896-18710915 | MS.gene017764:CDS | 50.0% |
| ! | TTTGAGCATGTGTTGGCCAC+CGG | - | chr7.4:18709032-18709051 | None:intergenic | 50.0% |
| !! | TTCTAGCTTCTCCCACTGGA+AGG | + | chr7.4:18708655-18708674 | MS.gene017764:CDS | 50.0% |
| AACACACATACACGGGGAGG+GGG | + | chr7.4:18709054-18709073 | MS.gene017764:intron | 55.0% | |
| AACTATGCGACGAGGGTCAG+TGG | - | chr7.4:18709553-18709572 | None:intergenic | 55.0% | |
| ATGAGTGGCACTACCACCAG+TGG | - | chr7.4:18710804-18710823 | None:intergenic | 55.0% | |
| CAAGACTCCAGCGTTATGGC+AGG | + | chr7.4:18709607-18709626 | MS.gene017764:CDS | 55.0% | |
| CCCACTTTCCTCTGGGTGAA+AGG | - | chr7.4:18710653-18710672 | None:intergenic | 55.0% | |
| CTCCAGCGTTATGGCAGGAA+TGG | + | chr7.4:18709612-18709631 | MS.gene017764:CDS | 55.0% | |
| CTCCATTCCTGCCATAACGC+TGG | - | chr7.4:18709617-18709636 | None:intergenic | 55.0% | |
| GGAATCCCAGGTTTGATCCC+AGG | - | chr7.4:18709091-18709110 | None:intergenic | 55.0% | |
| GGGATCAAACCTGGGATTCC+AGG | + | chr7.4:18709091-18709110 | MS.gene017764:intron | 55.0% | |
| GGTGACCTGGGATCAAACCT+GGG | + | chr7.4:18709083-18709102 | MS.gene017764:intron | 55.0% | |
| GGTGCCAGGAACATAAAGGG+AGG | + | chr7.4:18711149-18711168 | MS.gene017764:CDS | 55.0% | |
| TCCTCAGAAATTGGGTCCGG+GGG | + | chr7.4:18709467-18709486 | MS.gene017764:CDS | 55.0% | |
| TGACCCTCGTCGCATAGTTG+TGG | + | chr7.4:18709554-18709573 | MS.gene017764:CDS | 55.0% | |
| TGGTGACCTGGGATCAAACC+TGG | + | chr7.4:18709082-18709101 | MS.gene017764:intron | 55.0% | |
| ! | CCGGACCCAATTTCTGAGGA+AGG | - | chr7.4:18709467-18709486 | None:intergenic | 55.0% |
| ! | TTGAGCATGTGTTGGCCACC+GGG | - | chr7.4:18709031-18709050 | None:intergenic | 55.0% |
| ACCCCCGGACCCAATTTCTG+AGG | - | chr7.4:18709471-18709490 | None:intergenic | 60.0% | |
| ACTCCAAGCTCGTACACCCC+CGG | - | chr7.4:18709486-18709505 | None:intergenic | 60.0% | |
| TGCGGAGTGATGTTGGCCGA+TGG | + | chr7.4:18710839-18710858 | MS.gene017764:CDS | 60.0% | |
| ! | AGGGGGAAGTGTGGTGACCT+GGG | + | chr7.4:18709071-18709090 | MS.gene017764:intron | 60.0% |
| TACACGGGGAGGGGGAAGTG+TGG | + | chr7.4:18709062-18709081 | MS.gene017764:intron | 65.0% | |
| ! | GAGGGGGAAGTGTGGTGACC+TGG | + | chr7.4:18709070-18709089 | MS.gene017764:intron | 65.0% |
| ! | GGTCCGGGGGTGTACGAGCT+TGG | + | chr7.4:18709480-18709499 | MS.gene017764:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18708605 | 18711198 | 18708605 | ID=MS.gene017764 |
| chr7.4 | mRNA | 18708605 | 18711198 | 18708605 | ID=MS.gene017764.t1;Parent=MS.gene017764 |
| chr7.4 | exon | 18708605 | 18708676 | 18708605 | ID=MS.gene017764.t1.exon1;Parent=MS.gene017764.t1 |
| chr7.4 | CDS | 18708605 | 18708676 | 18708605 | ID=cds.MS.gene017764.t1;Parent=MS.gene017764.t1 |
| chr7.4 | exon | 18709390 | 18709746 | 18709390 | ID=MS.gene017764.t1.exon2;Parent=MS.gene017764.t1 |
| chr7.4 | CDS | 18709390 | 18709746 | 18709390 | ID=cds.MS.gene017764.t1;Parent=MS.gene017764.t1 |
| chr7.4 | exon | 18710479 | 18711198 | 18710479 | ID=MS.gene017764.t1.exon3;Parent=MS.gene017764.t1 |
| chr7.4 | CDS | 18710479 | 18711198 | 18710479 | ID=cds.MS.gene017764.t1;Parent=MS.gene017764.t1 |
| Gene Sequence |
| Protein sequence |
