Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017784.t1 | GAU40839.1 | 51.8 | 813 | 208 | 7 | 7 | 651 | 29 | 825 | 2.60E-218 | 768.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017784.t1 | Q5UBY2 | 27.5 | 539 | 305 | 14 | 45 | 507 | 24 | 552 | 6.6e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017784.t1 | A0A2Z6P9Q3 | 51.8 | 813 | 208 | 7 | 7 | 651 | 29 | 825 | 1.9e-218 | 768.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017784.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017784.t1 | MTR_7g446060 | 71.429 | 84 | 24 | 0 | 119 | 202 | 2 | 85 | 1.56e-34 | 128 |
| MS.gene017784.t1 | MTR_2g090105 | 43.750 | 192 | 82 | 5 | 466 | 653 | 16 | 185 | 5.35e-34 | 129 |
| MS.gene017784.t1 | MTR_7g031620 | 71.951 | 82 | 23 | 0 | 47 | 128 | 1 | 82 | 1.33e-33 | 123 |
| MS.gene017784.t1 | MTR_4g035820 | 27.506 | 389 | 223 | 16 | 24 | 366 | 57 | 432 | 1.98e-21 | 99.4 |
| MS.gene017784.t1 | MTR_0856s0010 | 32.031 | 128 | 86 | 1 | 41 | 167 | 33 | 160 | 4.98e-15 | 73.6 |
| MS.gene017784.t1 | MTR_8g465780 | 30.233 | 129 | 88 | 2 | 254 | 380 | 1 | 129 | 5.08e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017784.t1 | AT1G52520 | 34.967 | 306 | 180 | 8 | 201 | 489 | 390 | 693 | 1.75e-48 | 181 |
| MS.gene017784.t1 | AT4G15090 | 29.426 | 418 | 264 | 9 | 199 | 614 | 367 | 755 | 2.64e-48 | 182 |
| MS.gene017784.t1 | AT4G15090 | 29.426 | 418 | 264 | 9 | 199 | 614 | 367 | 755 | 2.64e-48 | 182 |
| MS.gene017784.t1 | AT4G15090 | 29.426 | 418 | 264 | 9 | 199 | 614 | 367 | 755 | 2.64e-48 | 182 |
| MS.gene017784.t1 | AT4G15090 | 29.426 | 418 | 264 | 9 | 199 | 614 | 367 | 755 | 2.64e-48 | 182 |
| MS.gene017784.t1 | AT4G15090 | 29.426 | 418 | 264 | 9 | 199 | 614 | 367 | 755 | 2.64e-48 | 182 |
| MS.gene017784.t1 | AT3G22170 | 39.035 | 228 | 132 | 2 | 223 | 450 | 401 | 621 | 1.63e-46 | 177 |
| MS.gene017784.t1 | AT3G22170 | 39.035 | 228 | 132 | 2 | 223 | 450 | 401 | 621 | 1.63e-46 | 177 |
| MS.gene017784.t1 | AT1G76320 | 35.547 | 256 | 153 | 6 | 199 | 452 | 304 | 549 | 5.58e-42 | 163 |
| MS.gene017784.t1 | AT1G76320 | 35.246 | 122 | 68 | 4 | 48 | 160 | 3 | 122 | 1.94e-12 | 70.9 |
| MS.gene017784.t1 | AT1G76320 | 35.547 | 256 | 153 | 6 | 199 | 452 | 304 | 549 | 5.58e-42 | 163 |
| MS.gene017784.t1 | AT1G76320 | 35.246 | 122 | 68 | 4 | 48 | 160 | 3 | 122 | 1.94e-12 | 70.9 |
| MS.gene017784.t1 | AT1G76320 | 35.547 | 256 | 153 | 6 | 199 | 452 | 304 | 549 | 6.15e-42 | 162 |
| MS.gene017784.t1 | AT1G76320 | 35.246 | 122 | 68 | 4 | 48 | 160 | 3 | 122 | 1.82e-12 | 71.2 |
| MS.gene017784.t1 | AT1G76320 | 35.547 | 256 | 153 | 6 | 199 | 452 | 304 | 549 | 9.66e-42 | 161 |
| MS.gene017784.t1 | AT1G76320 | 35.246 | 122 | 68 | 4 | 48 | 160 | 3 | 122 | 2.39e-12 | 70.5 |
| MS.gene017784.t1 | AT4G38180 | 34.749 | 259 | 153 | 5 | 195 | 447 | 386 | 634 | 5.59e-40 | 157 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 258 | 526 | 1.30e-38 | 152 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 315 | 583 | 1.66e-38 | 152 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 315 | 583 | 1.66e-38 | 152 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 315 | 583 | 1.77e-38 | 152 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 315 | 583 | 1.77e-38 | 152 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 315 | 583 | 2.04e-38 | 152 |
| MS.gene017784.t1 | AT4G19990 | 34.286 | 280 | 168 | 6 | 199 | 473 | 329 | 597 | 2.11e-38 | 152 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 293 | 509 | 1.28e-33 | 137 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 293 | 509 | 1.31e-33 | 137 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 334 | 550 | 1.37e-33 | 138 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 334 | 550 | 1.37e-33 | 138 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 334 | 550 | 1.46e-33 | 137 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 334 | 550 | 1.53e-33 | 137 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 334 | 550 | 1.53e-33 | 137 |
| MS.gene017784.t1 | AT2G32250 | 34.071 | 226 | 138 | 3 | 221 | 444 | 334 | 550 | 1.53e-33 | 137 |
| MS.gene017784.t1 | AT1G80010 | 29.582 | 311 | 189 | 7 | 163 | 448 | 357 | 662 | 1.33e-32 | 134 |
| MS.gene017784.t1 | AT4G38170 | 28.063 | 253 | 175 | 4 | 200 | 451 | 157 | 403 | 1.34e-32 | 133 |
| MS.gene017784.t1 | AT2G27110 | 30.798 | 263 | 166 | 8 | 191 | 447 | 182 | 434 | 2.24e-30 | 127 |
| MS.gene017784.t1 | AT2G27110 | 30.798 | 263 | 166 | 8 | 191 | 447 | 327 | 579 | 2.66e-30 | 127 |
| MS.gene017784.t1 | AT2G27110 | 30.798 | 263 | 166 | 8 | 191 | 447 | 327 | 579 | 2.66e-30 | 127 |
| MS.gene017784.t1 | AT3G06250 | 30.493 | 223 | 146 | 3 | 223 | 445 | 489 | 702 | 6.81e-25 | 110 |
| MS.gene017784.t1 | AT3G06250 | 30.493 | 223 | 146 | 3 | 223 | 445 | 489 | 702 | 6.81e-25 | 110 |
| MS.gene017784.t1 | AT3G06250 | 30.493 | 223 | 146 | 3 | 223 | 445 | 489 | 702 | 6.81e-25 | 110 |
| MS.gene017784.t1 | AT5G18960 | 30.804 | 224 | 144 | 5 | 223 | 445 | 513 | 726 | 1.96e-24 | 109 |
| MS.gene017784.t1 | AT5G18960 | 30.804 | 224 | 144 | 5 | 223 | 445 | 513 | 726 | 1.96e-24 | 109 |
| MS.gene017784.t1 | AT1G10240 | 28.287 | 251 | 137 | 7 | 208 | 444 | 383 | 604 | 4.51e-20 | 95.1 |
| MS.gene017784.t1 | AT1G10240 | 28.287 | 251 | 137 | 7 | 208 | 444 | 383 | 604 | 4.51e-20 | 95.1 |
Find 79 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 7.3:+18829979 | None:intergenic |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 7.3:+18828975 | None:intergenic |
| GATCAAAACCACATTTAATA+AGG | 0.217528 | 7.3:+18829643 | None:intergenic |
| AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 7.3:-18830056 | MS.gene017784:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 7.3:-18831284 | MS.gene017784:CDS |
| ATAGCTTGTATAAGTCATTT+TGG | 0.245260 | 7.3:-18830017 | MS.gene017784:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 7.3:-18831109 | MS.gene017784:CDS |
| CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | 7.3:-18829735 | MS.gene017784:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 7.3:+18831037 | None:intergenic |
| TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 7.3:-18830318 | MS.gene017784:CDS |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 7.3:-18831277 | MS.gene017784:CDS |
| CATATGTGAGAGACACGTTT+TGG | 0.314193 | 7.3:-18830205 | MS.gene017784:CDS |
| ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | 7.3:-18829530 | MS.gene017784:CDS |
| CTCAAAGTCTTTCTCATTGA+AGG | 0.344824 | 7.3:+18829812 | None:intergenic |
| CCTTTACTTCGAGCCGGTAT+AGG | 0.345614 | 7.3:+18829411 | None:intergenic |
| TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | 7.3:-18829913 | MS.gene017784:CDS |
| GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | 7.3:+18829482 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.377069 | 7.3:+18828823 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 7.3:+18828857 | None:intergenic |
| AATTAAAGATATAGTGTTTG+AGG | 0.408957 | 7.3:-18829838 | MS.gene017784:CDS |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 7.3:+18831272 | None:intergenic |
| AAGGCCGTCCTCCTTCAAAA+AGG | 0.409918 | 7.3:-18829392 | MS.gene017784:CDS |
| CTTTACTTCGAGCCGGTATA+GGG | 0.411624 | 7.3:+18829412 | None:intergenic |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 7.3:-18828964 | MS.gene017784:intron |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 7.3:-18828851 | MS.gene017784:CDS |
| ATCAAAACCACATTTAATAA+GGG | 0.445853 | 7.3:+18829644 | None:intergenic |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 7.3:+18828983 | None:intergenic |
| ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 7.3:-18830234 | MS.gene017784:CDS |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 7.3:+18831273 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 7.3:-18830900 | MS.gene017784:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 7.3:-18829181 | MS.gene017784:CDS |
| ATGATGATTTGTTTAAAATG+AGG | 0.460118 | 7.3:-18829536 | MS.gene017784:CDS |
| TAAAATGAGGAATTGGATCA+AGG | 0.463705 | 7.3:-18829523 | MS.gene017784:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 7.3:-18830908 | MS.gene017784:CDS |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 7.3:-18830075 | MS.gene017784:CDS |
| AGAGTGATTTCATGGAAAAG+TGG | 0.471372 | 7.3:-18830310 | MS.gene017784:CDS |
| TGGCATTGTGGAAGAAGGTT+CGG | 0.472580 | 7.3:-18829463 | MS.gene017784:CDS |
| TAAAATTCTTGACCCTATAC+CGG | 0.475148 | 7.3:-18829424 | MS.gene017784:CDS |
| TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 7.3:-18829777 | MS.gene017784:CDS |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 7.3:+18829692 | None:intergenic |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 7.3:+18828984 | None:intergenic |
| GAACCTTCTTCCACAATGCC+AGG | 0.495148 | 7.3:+18829465 | None:intergenic |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 7.3:-18831188 | MS.gene017784:CDS |
| TCATGATAATGAATGGTTGA+AGG | 0.498087 | 7.3:-18830261 | MS.gene017784:CDS |
| CATGATAATGAATGGTTGAA+GGG | 0.498314 | 7.3:-18830260 | MS.gene017784:CDS |
| TTGAACTTCATGATAATGAA+TGG | 0.502013 | 7.3:-18830268 | MS.gene017784:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 7.3:-18831283 | MS.gene017784:CDS |
| ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | 7.3:-18829483 | MS.gene017784:CDS |
| GAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 7.3:-18830309 | MS.gene017784:CDS |
| CCTATACCGGCTCGAAGTAA+AGG | 0.515132 | 7.3:-18829411 | MS.gene017784:CDS |
| ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | 7.3:-18829909 | MS.gene017784:CDS |
| TCCCCTGGCATTGTGGAAGA+AGG | 0.525978 | 7.3:-18829468 | MS.gene017784:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 7.3:-18831000 | MS.gene017784:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.529351 | 7.3:-18831425 | MS.gene017784:CDS |
| AACGTGTCTCTCACATATGC+AGG | 0.530851 | 7.3:+18830209 | None:intergenic |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 7.3:-18830929 | MS.gene017784:CDS |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 7.3:-18829955 | MS.gene017784:CDS |
| TTAGAACTTAATGATCAAGC+TGG | 0.546528 | 7.3:-18830977 | MS.gene017784:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 7.3:+18831038 | None:intergenic |
| AGACATACCCTTATTAAATG+TGG | 0.563948 | 7.3:-18829651 | MS.gene017784:CDS |
| AACCTTCTTCCACAATGCCA+GGG | 0.580735 | 7.3:+18829466 | None:intergenic |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 7.3:+18829696 | None:intergenic |
| ATTCAATCTAGCCTTGCACT+TGG | 0.584905 | 7.3:+18831129 | None:intergenic |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 7.3:-18829475 | MS.gene017784:CDS |
| GGACGGCCTTTACTTCGAGC+CGG | 0.603481 | 7.3:+18829405 | None:intergenic |
| GATGAAGAGGATATCAGAGA+AGG | 0.605305 | 7.3:-18831412 | MS.gene017784:CDS |
| TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 7.3:-18830235 | MS.gene017784:CDS |
| ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 7.3:-18830259 | MS.gene017784:CDS |
| CGTGTTATTGATGACGACGA+CGG | 0.620902 | 7.3:+18828693 | None:intergenic |
| TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 7.3:-18830066 | MS.gene017784:CDS |
| CTTGTACTTTAGACGCACAC+AGG | 0.627505 | 7.3:+18829209 | None:intergenic |
| ACCTTCTTCCACAATGCCAG+GGG | 0.630026 | 7.3:+18829467 | None:intergenic |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 7.3:-18829958 | MS.gene017784:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 7.3:+18831334 | None:intergenic |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 7.3:-18829023 | MS.gene017784:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 7.3:-18831208 | MS.gene017784:CDS |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 7.3:-18829304 | MS.gene017784:intron |
| CTGTTAACTTAAGAACACAA+AGG | 0.666537 | 7.3:+18829736 | None:intergenic |
| ACGACGACGGATCATTCACA+TGG | 0.715885 | 7.3:+18828706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTCATATATGTTTTTA+GGG | - | chr7.3:18831298-18831317 | MS.gene017784:CDS | 10.0% |
| !!! | TTTAATTCATATATGTTTTT+AGG | - | chr7.3:18831297-18831316 | MS.gene017784:CDS | 10.0% |
| !! | TAAGCATTAAATACAAATTT+AGG | + | chr7.3:18828823-18828842 | None:intergenic | 15.0% |
| !!! | GTCTAATTTTCAATATTTAA+TGG | - | chr7.3:18831120-18831139 | MS.gene017784:CDS | 15.0% |
| !!! | TAATTCATATATGTTTTTAG+GGG | - | chr7.3:18831299-18831318 | MS.gene017784:CDS | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr7.3:18828902-18828921 | MS.gene017784:intron | 15.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | - | chr7.3:18830399-18830418 | MS.gene017784:intron | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | - | chr7.3:18830519-18830538 | MS.gene017784:intron | 20.0% |
| !! | ATCAAAACCACATTTAATAA+GGG | + | chr7.3:18830716-18830735 | None:intergenic | 20.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr7.3:18828703-18828722 | MS.gene017784:CDS | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | + | chr7.3:18830395-18830414 | None:intergenic | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr7.3:18831475-18831494 | MS.gene017784:intron | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | - | chr7.3:18830593-18830612 | MS.gene017784:intron | 20.0% |
| !!! | AATTCATATATGTTTTTAGG+GGG | - | chr7.3:18831300-18831319 | MS.gene017784:CDS | 20.0% |
| !!! | AATTTTCAATATTTAATGGC+AGG | - | chr7.3:18831124-18831143 | MS.gene017784:CDS | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | - | chr7.3:18830821-18830840 | MS.gene017784:intron | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | - | chr7.3:18830827-18830846 | MS.gene017784:intron | 20.0% |
| !!! | ATTTTCAATATTTAATGGCA+GGG | - | chr7.3:18831125-18831144 | MS.gene017784:CDS | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | + | chr7.3:18830821-18830840 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr7.3:18829337-18829356 | MS.gene017784:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr7.3:18828792-18828811 | MS.gene017784:intron | 20.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr7.3:18831487-18831506 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr7.3:18829248-18829267 | MS.gene017784:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr7.3:18829116-18829135 | MS.gene017784:intron | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr7.3:18831450-18831469 | None:intergenic | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | - | chr7.3:18830282-18830301 | MS.gene017784:CDS | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | - | chr7.3:18830123-18830142 | MS.gene017784:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr7.3:18829486-18829505 | MS.gene017784:CDS | 25.0% |
| ! | GATCAAAACCACATTTAATA+AGG | + | chr7.3:18830717-18830736 | None:intergenic | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr7.3:18829117-18829136 | MS.gene017784:intron | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr7.3:18828702-18828721 | MS.gene017784:CDS | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | - | chr7.3:18830291-18830310 | MS.gene017784:CDS | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | + | chr7.3:18831537-18831556 | None:intergenic | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | - | chr7.3:18830122-18830141 | MS.gene017784:CDS | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr7.3:18831503-18831522 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr7.3:18831445-18831464 | MS.gene017784:intron | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | - | chr7.3:18829943-18829962 | MS.gene017784:CDS | 25.0% |
| !! | AAGTAGAAATTTTCGATCAA+TGG | - | chr7.3:18829412-18829431 | MS.gene017784:CDS | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr7.3:18831376-18831395 | None:intergenic | 25.0% |
| !! | TGGTTTTTGTTAAAGGATTT+GGG | + | chr7.3:18829211-18829230 | None:intergenic | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr7.3:18830580-18830599 | MS.gene017784:intron | 25.0% |
| !! | TGTTTTCATAGACTCATAAT+CGG | + | chr7.3:18829993-18830012 | None:intergenic | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | - | chr7.3:18830089-18830108 | MS.gene017784:CDS | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr7.3:18831377-18831396 | None:intergenic | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | - | chr7.3:18830340-18830359 | MS.gene017784:CDS | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | + | chr7.3:18831385-18831404 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | - | chr7.3:18831532-18831551 | MS.gene017784:intron | 25.0% |
| !!! | TTGGTTTTTGTTAAAGGATT+TGG | + | chr7.3:18829212-18829231 | None:intergenic | 25.0% |
| ACTTATGAGTGAAGTAAATC+AGG | - | chr7.3:18831393-18831412 | MS.gene017784:CDS | 30.0% | |
| AGACATACCCTTATTAAATG+TGG | - | chr7.3:18830706-18830725 | MS.gene017784:intron | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr7.3:18828932-18828951 | MS.gene017784:intron | 30.0% | |
| CTGTTAACTTAAGAACACAA+AGG | + | chr7.3:18830624-18830643 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | - | chr7.3:18830622-18830641 | MS.gene017784:intron | 30.0% | |
| TAAAATGAGGAATTGGATCA+AGG | - | chr7.3:18830834-18830853 | MS.gene017784:intron | 30.0% | |
| TAAAATTCTTGACCCTATAC+CGG | - | chr7.3:18830933-18830952 | MS.gene017784:CDS | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr7.3:18831506-18831525 | MS.gene017784:intron | 30.0% | |
| TCTGTCTTGATCAGTAATTA+TGG | + | chr7.3:18829870-18829889 | None:intergenic | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | + | chr7.3:18830664-18830683 | None:intergenic | 30.0% | |
| TGATCAGTAATTATGGCATT+CGG | + | chr7.3:18829863-18829882 | None:intergenic | 30.0% | |
| TTACTTGGTTATTCCAAACA+TGG | - | chr7.3:18829813-18829832 | MS.gene017784:CDS | 30.0% | |
| TTAGAACTTAATGATCAAGC+TGG | - | chr7.3:18829380-18829399 | MS.gene017784:CDS | 30.0% | |
| TTTAACAAAAACCAAGTGCA+AGG | - | chr7.3:18829217-18829236 | MS.gene017784:intron | 30.0% | |
| TTTGAGTAAGAGTGATTTCA+TGG | - | chr7.3:18830039-18830058 | MS.gene017784:CDS | 30.0% | |
| ! | ATGATAATGAATGGTTGAAG+GGG | - | chr7.3:18830098-18830117 | MS.gene017784:CDS | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | - | chr7.3:18830402-18830421 | MS.gene017784:intron | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | - | chr7.3:18830097-18830116 | MS.gene017784:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr7.3:18829457-18829476 | MS.gene017784:CDS | 30.0% |
| ! | TCATGATAATGAATGGTTGA+AGG | - | chr7.3:18830096-18830115 | MS.gene017784:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr7.3:18829813-18829832 | None:intergenic | 30.0% |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr7.3:18830979-18830998 | None:intergenic | 30.0% |
| !! | ATAGTTTGATCAGTTGATGA+GGG | + | chr7.3:18828740-18828759 | None:intergenic | 30.0% |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | - | chr7.3:18831621-18831640 | MS.gene017784:intron | 30.0% |
| !! | TTGCACTTGGTTTTTGTTAA+AGG | + | chr7.3:18829218-18829237 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr7.3:18831040-18831059 | None:intergenic | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | - | chr7.3:18830205-18830224 | MS.gene017784:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr7.3:18829616-18829635 | MS.gene017784:CDS | 30.0% |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | - | chr7.3:18830724-18830743 | MS.gene017784:intron | 30.0% |
| AACTCCAAAACCCATAGATT+GGG | + | chr7.3:18829087-18829106 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr7.3:18829074-18829093 | MS.gene017784:intron | 35.0% | |
| AGAGTGATTTCATGGAAAAG+TGG | - | chr7.3:18830047-18830066 | MS.gene017784:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr7.3:18829798-18829817 | MS.gene017784:CDS | 35.0% | |
| ATCCATGCAAAATGCAATTG+CGG | - | chr7.3:18829889-18829908 | MS.gene017784:CDS | 35.0% | |
| ATGGGTGATAACCCAATTTA+AGG | + | chr7.3:18828717-18828736 | None:intergenic | 35.0% | |
| ATGGTTTACTCCAACAAATG+GGG | + | chr7.3:18829735-18829754 | None:intergenic | 35.0% | |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr7.3:18831039-18831058 | MS.gene017784:CDS | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | + | chr7.3:18830668-18830687 | None:intergenic | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr7.3:18829026-18829045 | None:intergenic | 35.0% | |
| CTCAAAGTCTTTCTCATTGA+AGG | + | chr7.3:18830548-18830567 | None:intergenic | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | - | chr7.3:18830048-18830067 | MS.gene017784:CDS | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr7.3:18829736-18829755 | None:intergenic | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | - | chr7.3:18829449-18829468 | MS.gene017784:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr7.3:18829322-18829341 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr7.3:18829088-18829107 | None:intergenic | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr7.3:18829428-18829447 | MS.gene017784:CDS | 35.0% | |
| TCATGAAGATGAAAAACCTC+AGG | - | chr7.3:18829007-18829026 | MS.gene017784:CDS | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr7.3:18829737-18829756 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr7.3:18829169-18829188 | MS.gene017784:CDS | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr7.3:18829737-18829756 | MS.gene017784:CDS | 35.0% | |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr7.3:18829653-18829672 | MS.gene017784:CDS | 35.0% |
| ! | ATATGTGAGAGACACGTTTT+GGG | - | chr7.3:18830153-18830172 | MS.gene017784:CDS | 35.0% |
| ! | CCTCTTATATTTTCTCTCAG+TGG | - | chr7.3:18830665-18830684 | MS.gene017784:intron | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | - | chr7.3:18830668-18830687 | MS.gene017784:intron | 35.0% |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | - | chr7.3:18830786-18830805 | MS.gene017784:intron | 35.0% |
| ! | GATAGTTTGATCAGTTGATG+AGG | + | chr7.3:18828741-18828760 | None:intergenic | 35.0% |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr7.3:18831176-18831195 | MS.gene017784:CDS | 35.0% |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr7.3:18829354-18829373 | MS.gene017784:CDS | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | - | chr7.3:18830301-18830320 | MS.gene017784:CDS | 35.0% |
| !! | GAGTATCTACTTAGCTTTTC+TGG | + | chr7.3:18829971-18829990 | None:intergenic | 35.0% |
| !! | TAGGGGGAACATATTAGTTT+TGG | - | chr7.3:18831316-18831335 | MS.gene017784:CDS | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | - | chr7.3:18830444-18830463 | MS.gene017784:intron | 35.0% |
| !!! | AGGGGGAACATATTAGTTTT+GGG | - | chr7.3:18831317-18831336 | MS.gene017784:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr7.3:18831041-18831060 | None:intergenic | 35.0% |
| !!! | CATATTAGTTTTGGGAGGAA+TGG | - | chr7.3:18831325-18831344 | MS.gene017784:CDS | 35.0% |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr7.3:18829615-18829634 | MS.gene017784:CDS | 35.0% |
| ACAGAGTGGAAATCAACAAG+AGG | - | chr7.3:18831053-18831072 | MS.gene017784:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr7.3:18829073-18829092 | MS.gene017784:intron | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr7.3:18829323-18829342 | None:intergenic | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr7.3:18829011-18829030 | MS.gene017784:CDS | 40.0% | |
| GATGAAGAGGATATCAGAGA+AGG | - | chr7.3:18828945-18828964 | MS.gene017784:intron | 40.0% | |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr7.3:18829149-18829168 | MS.gene017784:intron | 40.0% | |
| ! | AACCGCAATTGCATTTTGCA+TGG | + | chr7.3:18829894-18829913 | None:intergenic | 40.0% |
| ! | CATATGTGAGAGACACGTTT+TGG | - | chr7.3:18830152-18830171 | MS.gene017784:CDS | 40.0% |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr7.3:18829080-18829099 | MS.gene017784:intron | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | - | chr7.3:18830672-18830691 | MS.gene017784:intron | 40.0% |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr7.3:18829365-18829384 | None:intergenic | 40.0% |
| ! | TTGCATTGGTGAATGCTTTC+TGG | + | chr7.3:18830381-18830400 | None:intergenic | 40.0% |
| !! | ACTTCCTTTTTGAAGGAGGA+CGG | + | chr7.3:18830972-18830991 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | - | chr7.3:18830448-18830467 | MS.gene017784:intron | 40.0% |
| !! | ATTCAATCTAGCCTTGCACT+TGG | + | chr7.3:18829231-18829250 | None:intergenic | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr7.3:18830976-18830995 | None:intergenic | 40.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr7.3:18828735-18828754 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr7.3:18828736-18828755 | None:intergenic | 40.0% |
| !!! | GGGAACATATTAGTTTTGGG+AGG | - | chr7.3:18831320-18831339 | MS.gene017784:CDS | 40.0% |
| AAAGTGAGGAGACTACGACT+TGG | - | chr7.3:18829500-18829519 | MS.gene017784:CDS | 45.0% | |
| AACCTTCTTCCACAATGCCA+GGG | + | chr7.3:18830894-18830913 | None:intergenic | 45.0% | |
| AACGTGTCTCTCACATATGC+AGG | + | chr7.3:18830151-18830170 | None:intergenic | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr7.3:18829501-18829520 | MS.gene017784:CDS | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr7.3:18829830-18829849 | MS.gene017784:CDS | 45.0% | |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr7.3:18829728-18829747 | None:intergenic | 45.0% | |
| CTTGTACTTTAGACGCACAC+AGG | + | chr7.3:18831151-18831170 | None:intergenic | 45.0% | |
| CTTTACTTCGAGCCGGTATA+GGG | + | chr7.3:18830948-18830967 | None:intergenic | 45.0% | |
| GCATGCACTCTAACCATGTT+TGG | + | chr7.3:18829829-18829848 | None:intergenic | 45.0% | |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr7.3:18829754-18829773 | MS.gene017784:CDS | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr7.3:18829357-18829376 | MS.gene017784:CDS | 45.0% | |
| TGGCATTGTGGAAGAAGGTT+CGG | - | chr7.3:18830894-18830913 | MS.gene017784:CDS | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr7.3:18829754-18829773 | None:intergenic | 45.0% |
| ! | ACCATCGATGACGAGCTTTT+GGG | + | chr7.3:18829922-18829941 | None:intergenic | 45.0% |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr7.3:18829722-18829741 | MS.gene017784:CDS | 45.0% |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr7.3:18829755-18829774 | MS.gene017784:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | - | chr7.3:18829778-18829797 | MS.gene017784:CDS | 45.0% |
| !! | CGTGTTATTGATGACGACGA+CGG | + | chr7.3:18831667-18831686 | None:intergenic | 45.0% |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr7.3:18831331-18831350 | MS.gene017784:CDS | 45.0% |
| AAGGCCGTCCTCCTTCAAAA+AGG | - | chr7.3:18830965-18830984 | MS.gene017784:CDS | 50.0% | |
| ACCTTCTTCCACAATGCCAG+GGG | + | chr7.3:18830893-18830912 | None:intergenic | 50.0% | |
| ACGACGACGGATCATTCACA+TGG | + | chr7.3:18831654-18831673 | None:intergenic | 50.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr7.3:18829502-18829521 | MS.gene017784:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | + | chr7.3:18829763-18829782 | None:intergenic | 50.0% | |
| CCTTTACTTCGAGCCGGTAT+AGG | + | chr7.3:18830949-18830968 | None:intergenic | 50.0% | |
| CTCGTCATCGATGGTGTTTG+TGG | - | chr7.3:18829927-18829946 | MS.gene017784:CDS | 50.0% | |
| GAACCTTCTTCCACAATGCC+AGG | + | chr7.3:18830895-18830914 | None:intergenic | 50.0% | |
| TCCCAAAAGCTCGTCATCGA+TGG | - | chr7.3:18829918-18829937 | MS.gene017784:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr7.3:18829634-18829653 | MS.gene017784:CDS | 50.0% | |
| TTTGGGAGGAATGGACATGG+TGG | - | chr7.3:18831334-18831353 | MS.gene017784:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr7.3:18829633-18829652 | MS.gene017784:CDS | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | + | chr7.3:18829923-18829942 | None:intergenic | 50.0% |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | - | chr7.3:18829775-18829794 | MS.gene017784:CDS | 50.0% |
| !! | ACCTCTAAAGAAGCATCCCC+TGG | - | chr7.3:18830874-18830893 | MS.gene017784:intron | 50.0% |
| !! | CCTATACCGGCTCGAAGTAA+AGG | - | chr7.3:18830946-18830965 | MS.gene017784:CDS | 50.0% |
| !! | TGTGAGAGACACGTTTTGGG+CGG | - | chr7.3:18830156-18830175 | MS.gene017784:CDS | 50.0% |
| GCCAGGGGATGCTTCTTTAG+AGG | + | chr7.3:18830878-18830897 | None:intergenic | 55.0% | |
| TCCCCTGGCATTGTGGAAGA+AGG | - | chr7.3:18830889-18830908 | MS.gene017784:CDS | 55.0% | |
| !! | AGAAGCATCCCCTGGCATTG+TGG | - | chr7.3:18830882-18830901 | MS.gene017784:CDS | 55.0% |
| !! | GTGAGAGACACGTTTTGGGC+GGG | - | chr7.3:18830157-18830176 | MS.gene017784:CDS | 55.0% |
| GGACGGCCTTTACTTCGAGC+CGG | + | chr7.3:18830955-18830974 | None:intergenic | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr7.3:18829506-18829525 | MS.gene017784:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 18828680 | 18831699 | 18828680 | ID=MS.gene017784 |
| chr7.3 | mRNA | 18828680 | 18831699 | 18828680 | ID=MS.gene017784.t1;Parent=MS.gene017784 |
| chr7.3 | exon | 18831678 | 18831699 | 18831678 | ID=MS.gene017784.t1.exon1;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18831678 | 18831699 | 18831678 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| chr7.3 | exon | 18830877 | 18831457 | 18830877 | ID=MS.gene017784.t1.exon2;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18830877 | 18831457 | 18830877 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| chr7.3 | exon | 18829305 | 18830414 | 18829305 | ID=MS.gene017784.t1.exon3;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18829305 | 18830414 | 18829305 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| chr7.3 | exon | 18829162 | 18829233 | 18829162 | ID=MS.gene017784.t1.exon4;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18829162 | 18829233 | 18829162 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| chr7.3 | exon | 18828965 | 18829060 | 18828965 | ID=MS.gene017784.t1.exon5;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18828965 | 18829060 | 18828965 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| chr7.3 | exon | 18828826 | 18828882 | 18828826 | ID=MS.gene017784.t1.exon6;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18828826 | 18828882 | 18828826 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| chr7.3 | exon | 18828680 | 18828736 | 18828680 | ID=MS.gene017784.t1.exon7;Parent=MS.gene017784.t1 |
| chr7.3 | CDS | 18828680 | 18828736 | 18828680 | ID=cds.MS.gene017784.t1;Parent=MS.gene017784.t1 |
| Gene Sequence |
| Protein sequence |
