AlfalfaGEDB | MS.gene017874

M. sativa cultivar XinJiangDaYe / MS.gene017874

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017874.t1	XP_003613438.2	95.4	109	5	0	3	111	77	185	6.10E-52	213.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017874.t1	O48686	71.0	107	31	0	3	109	48	154	3.1e-36	152.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017874.t1	G7K6W4	95.4	109	5	0	3	111	77	185	4.4e-52	213.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene017874.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017874.t1	MTR_5g036670	95.413	109	5	0	3	111	77	185	1.26e-65	217
MS.gene017874.t1	MTR_8g062700	70.370	108	32	0	3	110	76	183	2.13e-45	159
MS.gene017874.t1	MTR_8g062700	70.370	108	32	0	3	110	76	183	2.23e-45	159
MS.gene017874.t1	MTR_6g008970	65.741	108	37	0	3	110	97	204	1.22e-40	145
MS.gene017874.t1	MTR_6g008995	64.815	108	36	2	3	110	14	119	7.38e-38	134
MS.gene017874.t1	MTR_6g008995	64.815	108	36	2	3	110	71	176	1.20e-37	134
MS.gene017874.t1	MTR_1g023820	50.476	105	10	2	3	107	21	83	6.40e-22	85.5
MS.gene017874.t1	MTR_7g013410	38.596	114	59	3	3	113	32	137	2.51e-19	79.3
MS.gene017874.t1	MTR_8g062350	32.857	140	55	2	8	108	53	192	2.21e-15	70.5
MS.gene017874.t1	MTR_1g105955	36.283	113	65	2	1	113	48	153	2.38e-15	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017874.t1	AT1G24190	71.028	107	31	0	3	109	48	154	7.97e-44	154
MS.gene017874.t1	AT1G24190	71.028	107	31	0	3	109	48	154	8.54e-44	154
MS.gene017874.t1	AT1G24190	71.028	107	31	0	3	109	48	154	8.87e-44	154
MS.gene017874.t1	AT1G70060	72.222	108	29	1	3	109	48	155	7.53e-43	151
MS.gene017874.t1	AT1G70060	72.222	108	29	1	3	109	48	155	7.53e-43	151
MS.gene017874.t1	AT3G01320	63.889	108	38	1	3	110	91	197	5.00e-37	135
MS.gene017874.t1	AT3G01320	63.889	108	38	1	3	110	91	197	5.04e-37	135
MS.gene017874.t1	AT5G15020	62.963	108	38	1	3	110	86	191	2.74e-36	133
MS.gene017874.t1	AT1G59890	61.682	107	39	1	3	109	79	183	2.76e-36	133
MS.gene017874.t1	AT1G59890	61.682	107	39	1	3	109	79	183	2.84e-36	133

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Find 44 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGCATCAGTGGGGA+AGG	0.485203	7.3:+17755088	MS.gene017874:intron
AACCACCCGGATCTTCTTGA+AGG	0.457397	7.3:+17754982	MS.gene017874:CDS
AACTCAGCATCAGTGGGGAA+GGG	0.528339	7.3:+17755089	MS.gene017874:intron
ACATACCTCTTTGTAGACCA+GGG	0.680303	7.3:-17754836	None:intergenic
ACATCAGGTACTTTCCCTCT+TGG	0.471918	7.3:-17755242	None:intergenic
ACCACCCGGATCTTCTTGAA+GGG	0.554045	7.3:+17754983	MS.gene017874:CDS
ACCCTTCAAGAAGATCCGGG+TGG	0.747614	7.3:-17754984	None:intergenic
ACTCAGCATCAGTGGGGAAG+GGG	0.462185	7.3:+17755090	MS.gene017874:intron
ACTGCAAAGGGGTATGTCTC+AGG	0.456330	7.3:-17755129	None:intergenic
AGGGTAATCTCATGGCCCTT+TGG	0.451315	7.3:-17754550	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATATTGAATACGTACAGAA+AGG	+	chr7.3:17754798-17754817	MS.gene017874:CDS	30.0%
AACTCTACAAATGCACCAAA+AGG	-	chr7.3:17754449-17754468	None:intergenic	35.0%
ATAAACCCTTCAAGAAGATC+CGG	-	chr7.3:17754991-17755010	None:intergenic	35.0%
ATGTCATAGAGACTTGATCT+TGG	+	chr7.3:17754510-17754529	MS.gene017874:CDS	35.0%
CTATAAAACTCAGCATCAGT+GGG	+	chr7.3:17755083-17755102	MS.gene017874:intron	35.0%
GAGTTATGTGAACACGATAA+AGG	+	chr7.3:17754630-17754649	MS.gene017874:CDS	35.0%
GTCAGGAAAATCTGTAATGT+TGG	+	chr7.3:17754868-17754887	MS.gene017874:intron	35.0%
TATAAAACTCAGCATCAGTG+GGG	+	chr7.3:17755084-17755103	MS.gene017874:intron	35.0%
TATATTCATCCTTCGAGCAA+TGG	+	chr7.3:17755166-17755185	MS.gene017874:CDS	35.0%
TGTCATAGAGACTTGATCTT+GGG	+	chr7.3:17754511-17754530	MS.gene017874:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	17754370	17755261	17754370	ID=MS.gene017874
chr7.3	mRNA	17754370	17755261	17754370	ID=MS.gene017874.t1;Parent=MS.gene017874
chr7.3	exon	17754370	17754374	17754370	ID=MS.gene017874.t1.exon1;Parent=MS.gene017874.t1
chr7.3	CDS	17754370	17754374	17754370	ID=cds.MS.gene017874.t1;Parent=MS.gene017874.t1
chr7.3	exon	17754465	17754651	17754465	ID=MS.gene017874.t1.exon2;Parent=MS.gene017874.t1
chr7.3	CDS	17754465	17754651	17754465	ID=cds.MS.gene017874.t1;Parent=MS.gene017874.t1
chr7.3	exon	17754754	17754852	17754754	ID=MS.gene017874.t1.exon3;Parent=MS.gene017874.t1
chr7.3	CDS	17754754	17754852	17754754	ID=cds.MS.gene017874.t1;Parent=MS.gene017874.t1
chr7.3	exon	17754964	17755004	17754964	ID=MS.gene017874.t1.exon4;Parent=MS.gene017874.t1
chr7.3	CDS	17754964	17755004	17754964	ID=cds.MS.gene017874.t1;Parent=MS.gene017874.t1
chr7.3	exon	17755096	17755261	17755096	ID=MS.gene017874.t1.exon5;Parent=MS.gene017874.t1
chr7.3	CDS	17755096	17755261	17755096	ID=cds.MS.gene017874.t1;Parent=MS.gene017874.t1

Gene Sequence

>MS.gene017874

ATGTTGTACCACGTTGTTTTTGTATATATATTGGGAGAGGGATTATGAATTTGTTAGTTGTAATTGATTTGTTTATCCTTTTGGTGCATTTGTAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGATGTCATAGAGACTTGATCTTGGGATTTAACACCTTTTTGCCAAAGGGCCATGAGATTACCCTTTCGTCCGAGGATGAGCAACCTCAACCAAAAAAGAAGGTTGAATTTTATGAAGCTACGAGTTATGTGAACACGATAAAGGTTAGAATGTTTGTGAGTTTAATGGATTCTCTTCATGCAGATTTGTTTGCAATGTAGAATTAATAGTTTTAGTTTTGAGCTTAATGGTTCCTTTTTATGCAGACTCGGTTTCAGGGCGATGTTCATGTTTACAAGTCATTTATGGACATATTGAATACGTACAGAAAGGAAAGTAAGCCTATCACCCTGGTCTACAAAGAGGTATGTGCTGTTATAGTCAGGAAAATCTGTAATGTTGGTTTTTTTTTTATTTCCTCCAGTACTTGACATATTGCTGTGATACACATTTTAATCATGATTGCACTTCTCCAGGTTGCTGCATTCTTCCAAAACCACCCGGATCTTCTTGAAGGGTTTATTCATCTGTGTCGTGTTGATTGGCGGTGACTGGAAAGCTATCTGTGTGTTGCGTAATTTTCGTGTTGGTCATGCTATAAAACTCAGCATCAGTGGGGAAGGGGGTGCTGATGTTGTGTACCTGAGACATACCCCTTTGCAGTGCACTCATACAAGCTATATTCATCCTTCGAGCAATGGTGTCAATGAGAAATTTGTATATCAAGTTAACCATTACTTTTTGAGGTGCCCTACCAAGAGGGAAAGTACCTGA

Protein sequence

>MS.gene017874.t1

MLVDTDGVIERVKELFRCHRDLILGFNTFLPKGHEITLSSEDEQPQPKKKVEFYEATSYVNTIKTRFQGDVHVYKSFMDILNTYRKESKPITLVYKEVAAFFQNHPDLLEGISGEGGADVVYLRHTPLQCTHTSYIHPSSNGVNEKFVYQVNHYFLRCPTKREST