Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017910.t1 | XP_013449626.1 | 97.2 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 3.40E-124 | 454.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017910.t1 | Q9SCM4 | 69.8 | 189 | 53 | 2 | 1 | 189 | 1 | 185 | 9.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017910.t1 | A0A072U1R2 | 97.2 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 2.4e-124 | 454.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017910.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017910.t1 | MTR_7g091810 | 97.388 | 268 | 7 | 0 | 1 | 268 | 1 | 268 | 0.0 | 538 |
| MS.gene017910.t1 | MTR_0100s0160 | 67.247 | 287 | 73 | 4 | 1 | 268 | 1 | 285 | 3.61e-132 | 375 |
| MS.gene017910.t1 | MTR_6g008210 | 43.949 | 157 | 80 | 3 | 2 | 154 | 5 | 157 | 2.35e-38 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017910.t1 | AT2G41835 | 59.155 | 284 | 93 | 5 | 1 | 268 | 1 | 277 | 6.29e-112 | 324 |
| MS.gene017910.t1 | AT3G57480 | 57.090 | 268 | 94 | 2 | 1 | 268 | 1 | 247 | 1.21e-103 | 301 |
| MS.gene017910.t1 | AT3G57480 | 57.090 | 268 | 94 | 2 | 1 | 268 | 1 | 247 | 1.21e-103 | 301 |
| MS.gene017910.t1 | AT3G28210 | 44.872 | 156 | 77 | 3 | 2 | 154 | 5 | 154 | 1.55e-36 | 128 |
| MS.gene017910.t1 | AT3G28210 | 44.872 | 156 | 77 | 3 | 2 | 154 | 5 | 154 | 1.55e-36 | 128 |
| MS.gene017910.t1 | AT5G48205 | 55.963 | 109 | 20 | 3 | 1 | 106 | 1 | 84 | 7.04e-29 | 108 |
Find 65 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATCTTGGTCTGGAATT+AGG | 0.236801 | 7.1:-15398818 | None:intergenic |
| AGGAGTGGTGGCAACCAATA+TGG | 0.253022 | 7.1:+15399293 | MS.gene017910:CDS |
| TGATGTGGTTGAAGTTAAAT+TGG | 0.262744 | 7.1:-15399105 | None:intergenic |
| CTTCAACCACATCATCTAAA+TGG | 0.280674 | 7.1:+15399114 | MS.gene017910:CDS |
| ACCAAGATCCAAACATAGTT+TGG | 0.297216 | 7.1:+15398829 | MS.gene017910:CDS |
| CCCAAACTATGTTTGGATCT+TGG | 0.316294 | 7.1:-15398830 | None:intergenic |
| ACATGCTCTACAAGGGAAAC+TGG | 0.328561 | 7.1:-15399371 | None:intergenic |
| TTGCCTAGATCTGGGAATTC+AGG | 0.358612 | 7.1:-15397561 | None:intergenic |
| GAACAATGCTTGCCTAGATC+TGG | 0.368668 | 7.1:-15397570 | None:intergenic |
| CACCTGTGATCGTTGCAATC+AGG | 0.376003 | 7.1:+15397629 | MS.gene017910:CDS |
| TATGTCCACTTTGTGCTAAA+GGG | 0.378295 | 7.1:+15398790 | MS.gene017910:CDS |
| TGATGCTCCCAAACTATGTT+TGG | 0.385416 | 7.1:-15398837 | None:intergenic |
| GGTCCAGGACATTTGTGATC+AGG | 0.386396 | 7.1:-15399011 | None:intergenic |
| ACACCTTCTTTGCCCCATAT+TGG | 0.386967 | 7.1:-15399307 | None:intergenic |
| GGAGTGGTGGCAACCAATAT+GGG | 0.397987 | 7.1:+15399294 | MS.gene017910:CDS |
| CATTGTTTGAAGCACAGGTT+TGG | 0.404986 | 7.1:+15398987 | MS.gene017910:CDS |
| ATATGTCCACTTTGTGCTAA+AGG | 0.412254 | 7.1:+15398789 | MS.gene017910:CDS |
| AACAGTGACATCGTGTTTGT+TGG | 0.412502 | 7.1:-15398763 | None:intergenic |
| TTGACCATTGTTTGAAGCAC+AGG | 0.415680 | 7.1:+15398982 | MS.gene017910:CDS |
| GACGTCAAGCCTTCTTGACT+TGG | 0.417683 | 7.1:+15399136 | MS.gene017910:CDS |
| ACTATGTTTGGATCTTGGTC+TGG | 0.435501 | 7.1:-15398825 | None:intergenic |
| CCCTCTCAACATGCTCTACA+AGG | 0.443451 | 7.1:-15399379 | None:intergenic |
| ACTAAGGTCTCTCTGCATCC+TGG | 0.445762 | 7.1:-15398924 | None:intergenic |
| CGGTAATATTAATAATCAAC+TGG | 0.450182 | 7.1:+15399196 | MS.gene017910:CDS |
| CCAAGATCCAAACATAGTTT+GGG | 0.458482 | 7.1:+15398830 | MS.gene017910:CDS |
| TTCCTCGGCCACTAGTTTGG+TGG | 0.466086 | 7.1:+15399247 | MS.gene017910:CDS |
| ACAGTGACATCGTGTTTGTT+GGG | 0.469931 | 7.1:-15398762 | None:intergenic |
| GTCTCTCTGCATCCTGGGAC+AGG | 0.472023 | 7.1:-15398918 | None:intergenic |
| GATGTGGTTGAAGTTAAATT+GGG | 0.475957 | 7.1:-15399104 | None:intergenic |
| GATTGTGTTTGAGAATACTA+AGG | 0.477004 | 7.1:-15398940 | None:intergenic |
| GCATGTCCCAAGTGCAGTAA+AGG | 0.479086 | 7.1:+15399338 | MS.gene017910:CDS |
| CTAAGGTCTCTCTGCATCCT+GGG | 0.483016 | 7.1:-15398923 | None:intergenic |
| GCTTCTAAATTGAGTGGGAT+AGG | 0.483203 | 7.1:+15399158 | MS.gene017910:CDS |
| ACTCCTGAATTCCCAGATCT+AGG | 0.493436 | 7.1:+15397558 | MS.gene017910:CDS |
| AACCTGATTGCAACGATCAC+AGG | 0.505212 | 7.1:-15397631 | None:intergenic |
| CAACCAATATGGGGCAAAGA+AGG | 0.517036 | 7.1:+15399304 | MS.gene017910:CDS |
| CTCAAACACAATCAAGTGTA+GGG | 0.519840 | 7.1:+15398950 | MS.gene017910:CDS |
| ATTTAGAAGCCAAGTCAAGA+AGG | 0.521688 | 7.1:-15399145 | None:intergenic |
| GGACCTGATCACAAATGTCC+TGG | 0.523810 | 7.1:+15399008 | MS.gene017910:CDS |
| CATGCTCTACAAGGGAAACT+GGG | 0.533711 | 7.1:-15399370 | None:intergenic |
| ACTTGGCTTCTAAATTGAGT+GGG | 0.535363 | 7.1:+15399153 | MS.gene017910:CDS |
| AACAATGCTTGCCTAGATCT+GGG | 0.537422 | 7.1:-15397569 | None:intergenic |
| CCTTGTAGAGCATGTTGAGA+GGG | 0.543468 | 7.1:+15399379 | MS.gene017910:CDS |
| GACTTGGCTTCTAAATTGAG+TGG | 0.550800 | 7.1:+15399152 | MS.gene017910:CDS |
| ATCCACCAAACTAGTGGCCG+AGG | 0.554475 | 7.1:-15399249 | None:intergenic |
| CGCATGATCCACCAAACTAG+TGG | 0.559921 | 7.1:-15399255 | None:intergenic |
| CAAACCTGTGCTTCAAACAA+TGG | 0.566927 | 7.1:-15398986 | None:intergenic |
| ATTGCAACGATCACAGGTGA+AGG | 0.568527 | 7.1:-15397625 | None:intergenic |
| GAGCATGTTGAGAGGGATCA+TGG | 0.569049 | 7.1:+15399386 | MS.gene017910:CDS |
| ATGTCCACTTTGTGCTAAAG+GGG | 0.570588 | 7.1:+15398791 | MS.gene017910:CDS |
| TCTCAAACACAATCAAGTGT+AGG | 0.571728 | 7.1:+15398949 | MS.gene017910:CDS |
| TGACGTCCATTTAGATGATG+TGG | 0.573502 | 7.1:-15399120 | None:intergenic |
| AATTATGCTCAATATAACTT+CGG | 0.599455 | 7.1:-15398731 | None:intergenic |
| ATAGGACAGAGCAGTGGCAG+CGG | 0.607545 | 7.1:+15399176 | MS.gene017910:CDS |
| CCCTTGTAGAGCATGTTGAG+AGG | 0.611040 | 7.1:+15399378 | MS.gene017910:CDS |
| GAAAACTTAGCATCACATAG+TGG | 0.613925 | 7.1:-15399227 | None:intergenic |
| AAAGTTCATCAAAGGAGTGG+TGG | 0.618343 | 7.1:+15399281 | MS.gene017910:CDS |
| CGAACCCCTTTAGCACAAAG+TGG | 0.621156 | 7.1:-15398795 | None:intergenic |
| AGTCTTTGGAATATGAGTAG+TGG | 0.643915 | 7.1:+15399065 | MS.gene017910:CDS |
| TTGCAACGATCACAGGTGAA+GGG | 0.647652 | 7.1:-15397624 | None:intergenic |
| CCTCTCAACATGCTCTACAA+GGG | 0.654661 | 7.1:-15399378 | None:intergenic |
| GAGTGGTGGCAACCAATATG+GGG | 0.662707 | 7.1:+15399295 | MS.gene017910:CDS |
| AATCAAGTGTAGGGACTGTG+AGG | 0.678787 | 7.1:+15398959 | MS.gene017910:CDS |
| AGTGGGATAGGACAGAGCAG+TGG | 0.703021 | 7.1:+15399170 | MS.gene017910:CDS |
| CATGTTGAGAGGGATCATGG+TGG | 0.804557 | 7.1:+15399389 | MS.gene017910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTTCATAAATTATTT+TGG | + | chr7.1:15398432-15398451 | MS.gene017910:intron | 10.0% |
| !! | AAGAAAATAATAGAATGAAA+CGG | - | chr7.1:15397729-15397748 | None:intergenic | 15.0% |
| !! | AATCATTTACATAAAATGTT+TGG | - | chr7.1:15398500-15398519 | None:intergenic | 15.0% |
| !!! | AAAACAATGTTTTTAATCAA+AGG | - | chr7.1:15397788-15397807 | None:intergenic | 15.0% |
| !!! | ATTTAAGTGTTTGATTTATT+GGG | + | chr7.1:15397869-15397888 | MS.gene017910:intron | 15.0% |
| !!! | GATTAAAAACATTGTTTTAA+TGG | + | chr7.1:15397790-15397809 | MS.gene017910:intron | 15.0% |
| !! | AATTATGCTCAATATAACTT+CGG | - | chr7.1:15398734-15398753 | None:intergenic | 20.0% |
| !! | AGAAAATAATAGAATGAAAC+GGG | - | chr7.1:15397728-15397747 | None:intergenic | 20.0% |
| !! | CATAACAATTATCATACTAA+CGG | + | chr7.1:15397970-15397989 | MS.gene017910:intron | 20.0% |
| !!! | CATTTAAGTGTTTGATTTAT+TGG | + | chr7.1:15397868-15397887 | MS.gene017910:intron | 20.0% |
| !!! | GGATTTTTTTCAAAAAGAAA+TGG | + | chr7.1:15398116-15398135 | MS.gene017910:intron | 20.0% |
| !!! | TATCAGTTTATTTTAGAGTA+AGG | + | chr7.1:15398095-15398114 | MS.gene017910:intron | 20.0% |
| !!! | TTCATTCTATTATTTTCTTC+TGG | + | chr7.1:15397730-15397749 | MS.gene017910:intron | 20.0% |
| !!! | TTTAAGTGTTTGATTTATTG+GGG | + | chr7.1:15397870-15397889 | MS.gene017910:intron | 20.0% |
| ! | AATAAGTTAGAAAGATCCTA+TGG | + | chr7.1:15398467-15398486 | MS.gene017910:intron | 25.0% |
| ! | ACTTAAAGTAAATCATTTGC+TGG | + | chr7.1:15398222-15398241 | MS.gene017910:intron | 25.0% |
| ! | ATTTCAGAATAATTATGCCT+CGG | - | chr7.1:15398285-15398304 | None:intergenic | 25.0% |
| ! | CGGTAATATTAATAATCAAC+TGG | + | chr7.1:15399196-15399215 | MS.gene017910:CDS | 25.0% |
| ! | GAAACTTAATTAAGTGCTTA+CGG | + | chr7.1:15398383-15398402 | MS.gene017910:intron | 25.0% |
| ! | TAATTCATATGAATATGCCT+CGG | - | chr7.1:15398258-15398277 | None:intergenic | 25.0% |
| ! | TCAAAATTCTTATCGAAACT+AGG | - | chr7.1:15398543-15398562 | None:intergenic | 25.0% |
| ! | TCACAAGTTTCTTTCTATTA+AGG | + | chr7.1:15398304-15398323 | MS.gene017910:intron | 25.0% |
| ! | TGTATATATTGGTATGGTAT+TGG | + | chr7.1:15398070-15398089 | MS.gene017910:intron | 25.0% |
| !! | AACCACAAATTTCTAAAAGT+TGG | + | chr7.1:15398164-15398183 | MS.gene017910:intron | 25.0% |
| !! | ACCACAAATTTCTAAAAGTT+GGG | + | chr7.1:15398165-15398184 | MS.gene017910:intron | 25.0% |
| !! | GTTTTTCATTTATGAGTCTT+TGG | + | chr7.1:15399051-15399070 | MS.gene017910:CDS | 25.0% |
| !! | TTAAGTGTTTGATTTATTGG+GGG | + | chr7.1:15397871-15397890 | MS.gene017910:intron | 25.0% |
| !!! | AAAACTTGTTTCCAACTTTT+TGG | - | chr7.1:15399036-15399055 | None:intergenic | 25.0% |
| !!! | AAACTTGTTTCCAACTTTTT+GGG | - | chr7.1:15399035-15399054 | None:intergenic | 25.0% |
| !!! | TGGCTTTTTCATAATTTGAT+GGG | - | chr7.1:15398881-15398900 | None:intergenic | 25.0% |
| AAAAAACCTTTACTGCACTT+GGG | - | chr7.1:15399347-15399366 | None:intergenic | 30.0% | |
| AAAAAAGTTCATCAAAGGAG+TGG | + | chr7.1:15399278-15399297 | MS.gene017910:CDS | 30.0% | |
| AACAATATACCTGCAAAAGA+TGG | - | chr7.1:15398704-15398723 | None:intergenic | 30.0% | |
| AAGCTGGATTGTGTATATAT+TGG | + | chr7.1:15398059-15398078 | MS.gene017910:intron | 30.0% | |
| AATTAAGCAACTCTTTCTGT+TGG | + | chr7.1:15398663-15398682 | MS.gene017910:intron | 30.0% | |
| ATGCGAAAAAAGTTCATCAA+AGG | + | chr7.1:15399273-15399292 | MS.gene017910:CDS | 30.0% | |
| GAGTTGCTTAATTGAAAACA+AGG | - | chr7.1:15398656-15398675 | None:intergenic | 30.0% | |
| GATGTGGTTGAAGTTAAATT+GGG | - | chr7.1:15399107-15399126 | None:intergenic | 30.0% | |
| GATTGTGTTTGAGAATACTA+AGG | - | chr7.1:15398943-15398962 | None:intergenic | 30.0% | |
| GGATTGTGTATATATTGGTA+TGG | + | chr7.1:15398064-15398083 | MS.gene017910:intron | 30.0% | |
| GGTTCACAAAACTATAGTAA+TGG | - | chr7.1:15398148-15398167 | None:intergenic | 30.0% | |
| TATATAGATGACAACCTTAC+TGG | - | chr7.1:15398349-15398368 | None:intergenic | 30.0% | |
| TGAGTATGATGTGCATATAT+AGG | + | chr7.1:15398612-15398631 | MS.gene017910:intron | 30.0% | |
| TGATGTGGTTGAAGTTAAAT+TGG | - | chr7.1:15399108-15399127 | None:intergenic | 30.0% | |
| TTCATATGAATTATGAACCG+AGG | + | chr7.1:15398265-15398284 | MS.gene017910:intron | 30.0% | |
| ! | CTTTTGCAGGTATATTGTTT+GGG | + | chr7.1:15398705-15398724 | MS.gene017910:intron | 30.0% |
| ! | TCTTTTGCAGGTATATTGTT+TGG | + | chr7.1:15398704-15398723 | MS.gene017910:intron | 30.0% |
| ! | TGTCATCTATATAGAGTGTT+CGG | + | chr7.1:15398356-15398375 | MS.gene017910:intron | 30.0% |
| ! | TTTTGCAGGTATATTGTTTG+GGG | + | chr7.1:15398706-15398725 | MS.gene017910:intron | 30.0% |
| !! | TCCCAACTTTTAGAAATTTG+TGG | - | chr7.1:15398169-15398188 | None:intergenic | 30.0% |
| !!! | AGGACATTTTTTCTTCTTTG+TGG | - | chr7.1:15398901-15398920 | None:intergenic | 30.0% |
| !!! | GTGGCTTTTTCATAATTTGA+TGG | - | chr7.1:15398882-15398901 | None:intergenic | 30.0% |
| ACCAAGATCCAAACATAGTT+TGG | + | chr7.1:15398829-15398848 | MS.gene017910:CDS | 35.0% | |
| ACTTGGCTTCTAAATTGAGT+GGG | + | chr7.1:15399153-15399172 | MS.gene017910:CDS | 35.0% | |
| ATATGTCCACTTTGTGCTAA+AGG | + | chr7.1:15398789-15398808 | MS.gene017910:CDS | 35.0% | |
| ATTTAGAAGCCAAGTCAAGA+AGG | - | chr7.1:15399148-15399167 | None:intergenic | 35.0% | |
| CAAAAAACCTTTACTGCACT+TGG | - | chr7.1:15399348-15399367 | None:intergenic | 35.0% | |
| CCAAGATCCAAACATAGTTT+GGG | + | chr7.1:15398830-15398849 | MS.gene017910:CDS | 35.0% | |
| CTCAAACACAATCAAGTGTA+GGG | + | chr7.1:15398950-15398969 | MS.gene017910:CDS | 35.0% | |
| CTTCAACCACATCATCTAAA+TGG | + | chr7.1:15399114-15399133 | MS.gene017910:CDS | 35.0% | |
| GAAAACTTAGCATCACATAG+TGG | - | chr7.1:15399230-15399249 | None:intergenic | 35.0% | |
| GATGTGCATATATAGGATTG+TGG | + | chr7.1:15398619-15398638 | MS.gene017910:intron | 35.0% | |
| TATGTCCACTTTGTGCTAAA+GGG | + | chr7.1:15398790-15398809 | MS.gene017910:CDS | 35.0% | |
| TCTCAAACACAATCAAGTGT+AGG | + | chr7.1:15398949-15398968 | MS.gene017910:CDS | 35.0% | |
| ! | ACAGAATTGACTTTGAAAGC+TGG | + | chr7.1:15398043-15398062 | MS.gene017910:intron | 35.0% |
| ! | ATGTGATGCTAAGTTTTCCT+CGG | + | chr7.1:15399232-15399251 | MS.gene017910:CDS | 35.0% |
| ! | TGTTTGATTTATTGGGGGTT+GGG | + | chr7.1:15397876-15397895 | MS.gene017910:intron | 35.0% |
| !! | AGTCTTTGGAATATGAGTAG+TGG | + | chr7.1:15399065-15399084 | MS.gene017910:CDS | 35.0% |
| !!! | ATTTTGACTTCTCCAGCTTT+TGG | + | chr7.1:15398556-15398575 | MS.gene017910:intron | 35.0% |
| !!! | CAAGTGCAGTAAAGGTTTTT+TGG | + | chr7.1:15399346-15399365 | MS.gene017910:CDS | 35.0% |
| !!! | TTTTGACTTCTCCAGCTTTT+GGG | + | chr7.1:15398557-15398576 | MS.gene017910:intron | 35.0% |
| AAAGTTCATCAAAGGAGTGG+TGG | + | chr7.1:15399281-15399300 | MS.gene017910:CDS | 40.0% | |
| AACAATGCTTGCCTAGATCT+GGG | - | chr7.1:15397572-15397591 | None:intergenic | 40.0% | |
| AACAGTGACATCGTGTTTGT+TGG | - | chr7.1:15398766-15398785 | None:intergenic | 40.0% | |
| AAGAAAAAATGTCCTGTCCC+AGG | + | chr7.1:15398906-15398925 | MS.gene017910:CDS | 40.0% | |
| ACAGTGACATCGTGTTTGTT+GGG | - | chr7.1:15398765-15398784 | None:intergenic | 40.0% | |
| ACTATGTTTGGATCTTGGTC+TGG | - | chr7.1:15398828-15398847 | None:intergenic | 40.0% | |
| AGTTCAACTAATTCGAGCTG+AGG | + | chr7.1:15397900-15397919 | MS.gene017910:intron | 40.0% | |
| ATGTCCACTTTGTGCTAAAG+GGG | + | chr7.1:15398791-15398810 | MS.gene017910:CDS | 40.0% | |
| CAAACCTGTGCTTCAAACAA+TGG | - | chr7.1:15398989-15399008 | None:intergenic | 40.0% | |
| CCCAAACTATGTTTGGATCT+TGG | - | chr7.1:15398833-15398852 | None:intergenic | 40.0% | |
| GACTTGGCTTCTAAATTGAG+TGG | + | chr7.1:15399152-15399171 | MS.gene017910:CDS | 40.0% | |
| GCTTAATGCAAAAGCCAGTA+AGG | + | chr7.1:15398332-15398351 | MS.gene017910:intron | 40.0% | |
| GCTTCTAAATTGAGTGGGAT+AGG | + | chr7.1:15399158-15399177 | MS.gene017910:CDS | 40.0% | |
| GTTCAACTAATTCGAGCTGA+GGG | + | chr7.1:15397901-15397920 | MS.gene017910:intron | 40.0% | |
| TGACGTCCATTTAGATGATG+TGG | - | chr7.1:15399123-15399142 | None:intergenic | 40.0% | |
| TGATGCTCCCAAACTATGTT+TGG | - | chr7.1:15398840-15398859 | None:intergenic | 40.0% | |
| ! | AATGTTTGGCTCATGTCCAT+AGG | - | chr7.1:15398486-15398505 | None:intergenic | 40.0% |
| ! | ACTTTTCAAACCCCAAAAGC+TGG | - | chr7.1:15398571-15398590 | None:intergenic | 40.0% |
| ! | ATATCAGCTCCATCTTTTGC+AGG | + | chr7.1:15398692-15398711 | MS.gene017910:intron | 40.0% |
| ! | CATTGTTTGAAGCACAGGTT+TGG | + | chr7.1:15398987-15399006 | MS.gene017910:CDS | 40.0% |
| ! | GTGTTTGATTTATTGGGGGT+TGG | + | chr7.1:15397875-15397894 | MS.gene017910:intron | 40.0% |
| ! | TTGACCATTGTTTGAAGCAC+AGG | + | chr7.1:15398982-15399001 | MS.gene017910:CDS | 40.0% |
| ! | TTGGATCTTGGTCTGGAATT+AGG | - | chr7.1:15398821-15398840 | None:intergenic | 40.0% |
| !! | TTTGACTTCTCCAGCTTTTG+GGG | + | chr7.1:15398558-15398577 | MS.gene017910:intron | 40.0% |
| AACCTGATTGCAACGATCAC+AGG | - | chr7.1:15397634-15397653 | None:intergenic | 45.0% | |
| AATCAAGTGTAGGGACTGTG+AGG | + | chr7.1:15398959-15398978 | MS.gene017910:CDS | 45.0% | |
| ACACCTTCTTTGCCCCATAT+TGG | - | chr7.1:15399310-15399329 | None:intergenic | 45.0% | |
| ACATGCTCTACAAGGGAAAC+TGG | - | chr7.1:15399374-15399393 | None:intergenic | 45.0% | |
| ACTAATTCGAGCTGAGGGTT+AGG | + | chr7.1:15397906-15397925 | MS.gene017910:intron | 45.0% | |
| ACTCCTGAATTCCCAGATCT+AGG | + | chr7.1:15397558-15397577 | MS.gene017910:CDS | 45.0% | |
| ATGTCCTGGACCCAAAAAGT+TGG | + | chr7.1:15399022-15399041 | MS.gene017910:CDS | 45.0% | |
| ATTGCAACGATCACAGGTGA+AGG | - | chr7.1:15397628-15397647 | None:intergenic | 45.0% | |
| CAACCAATATGGGGCAAAGA+AGG | + | chr7.1:15399304-15399323 | MS.gene017910:CDS | 45.0% | |
| CATGCTCTACAAGGGAAACT+GGG | - | chr7.1:15399373-15399392 | None:intergenic | 45.0% | |
| CCTCTCAACATGCTCTACAA+GGG | - | chr7.1:15399381-15399400 | None:intergenic | 45.0% | |
| CCTTGTAGAGCATGTTGAGA+GGG | + | chr7.1:15399379-15399398 | MS.gene017910:CDS | 45.0% | |
| GAACAATGCTTGCCTAGATC+TGG | - | chr7.1:15397573-15397592 | None:intergenic | 45.0% | |
| TTGCAACGATCACAGGTGAA+GGG | - | chr7.1:15397627-15397646 | None:intergenic | 45.0% | |
| TTGCCTAGATCTGGGAATTC+AGG | - | chr7.1:15397564-15397583 | None:intergenic | 45.0% | |
| TTGCTGGAAACATTGAACCG+AGG | + | chr7.1:15398238-15398257 | MS.gene017910:intron | 45.0% | |
| !!! | GTTTCCAACTTTTTGGGTCC+AGG | - | chr7.1:15399029-15399048 | None:intergenic | 45.0% |
| !! | TAATTTCATAAATTAATTTA+AGG | - | chr7.1:15397685-15397704 | None:intergenic | 5.0% |
| ACTAAGGTCTCTCTGCATCC+TGG | - | chr7.1:15398927-15398946 | None:intergenic | 50.0% | |
| AGCTGAGGGTTAGGAAGTTG+GGG | + | chr7.1:15397915-15397934 | MS.gene017910:intron | 50.0% | |
| AGGAGTGGTGGCAACCAATA+TGG | + | chr7.1:15399293-15399312 | MS.gene017910:CDS | 50.0% | |
| CACCTGTGATCGTTGCAATC+AGG | + | chr7.1:15397629-15397648 | MS.gene017910:CDS | 50.0% | |
| CATGTTGAGAGGGATCATGG+TGG | + | chr7.1:15399389-15399408 | MS.gene017910:CDS | 50.0% | |
| CCCTCTCAACATGCTCTACA+AGG | - | chr7.1:15399382-15399401 | None:intergenic | 50.0% | |
| CCCTTGTAGAGCATGTTGAG+AGG | + | chr7.1:15399378-15399397 | MS.gene017910:CDS | 50.0% | |
| CGAACCCCTTTAGCACAAAG+TGG | - | chr7.1:15398798-15398817 | None:intergenic | 50.0% | |
| CGCATGATCCACCAAACTAG+TGG | - | chr7.1:15399258-15399277 | None:intergenic | 50.0% | |
| CTAAGGTCTCTCTGCATCCT+GGG | - | chr7.1:15398926-15398945 | None:intergenic | 50.0% | |
| GACGTCAAGCCTTCTTGACT+TGG | + | chr7.1:15399136-15399155 | MS.gene017910:CDS | 50.0% | |
| GAGCATGTTGAGAGGGATCA+TGG | + | chr7.1:15399386-15399405 | MS.gene017910:CDS | 50.0% | |
| GAGCTGAGGGTTAGGAAGTT+GGG | + | chr7.1:15397914-15397933 | MS.gene017910:intron | 50.0% | |
| GAGTGGTGGCAACCAATATG+GGG | + | chr7.1:15399295-15399314 | MS.gene017910:CDS | 50.0% | |
| GCATGTCCCAAGTGCAGTAA+AGG | + | chr7.1:15399338-15399357 | MS.gene017910:CDS | 50.0% | |
| GGACCTGATCACAAATGTCC+TGG | + | chr7.1:15399008-15399027 | MS.gene017910:CDS | 50.0% | |
| GGAGTGGTGGCAACCAATAT+GGG | + | chr7.1:15399294-15399313 | MS.gene017910:CDS | 50.0% | |
| GGTCCAGGACATTTGTGATC+AGG | - | chr7.1:15399014-15399033 | None:intergenic | 50.0% | |
| ! | GTTTTCCTCGGCCACTAGTT+TGG | + | chr7.1:15399244-15399263 | MS.gene017910:CDS | 50.0% |
| AGTGGGATAGGACAGAGCAG+TGG | + | chr7.1:15399170-15399189 | MS.gene017910:CDS | 55.0% | |
| ATAGGACAGAGCAGTGGCAG+CGG | + | chr7.1:15399176-15399195 | MS.gene017910:CDS | 55.0% | |
| ATCCACCAAACTAGTGGCCG+AGG | - | chr7.1:15399252-15399271 | None:intergenic | 55.0% | |
| CGAGCTGAGGGTTAGGAAGT+TGG | + | chr7.1:15397913-15397932 | MS.gene017910:intron | 55.0% | |
| GCTGAGGGTTAGGAAGTTGG+GGG | + | chr7.1:15397916-15397935 | MS.gene017910:intron | 55.0% | |
| ! | TTCCTCGGCCACTAGTTTGG+TGG | + | chr7.1:15399247-15399266 | MS.gene017910:CDS | 55.0% |
| GTCTCTCTGCATCCTGGGAC+AGG | - | chr7.1:15398921-15398940 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 15397552 | 15399421 | 15397552 | ID=MS.gene017910 |
| chr7.1 | mRNA | 15397552 | 15399421 | 15397552 | ID=MS.gene017910.t1;Parent=MS.gene017910 |
| chr7.1 | exon | 15397552 | 15397650 | 15397552 | ID=MS.gene017910.t1.exon1;Parent=MS.gene017910.t1 |
| chr7.1 | CDS | 15397552 | 15397650 | 15397552 | ID=cds.MS.gene017910.t1;Parent=MS.gene017910.t1 |
| chr7.1 | exon | 15398714 | 15399421 | 15398714 | ID=MS.gene017910.t1.exon2;Parent=MS.gene017910.t1 |
| chr7.1 | CDS | 15398714 | 15399421 | 15398714 | ID=cds.MS.gene017910.t1;Parent=MS.gene017910.t1 |
| Gene Sequence |
| Protein sequence |
