Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017932.t1 | XP_024625805.1 | 89.7 | 348 | 35 | 1 | 1 | 348 | 1 | 347 | 1.00E-157 | 566.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017932.t1 | Q9SVY1 | 95.1 | 182 | 8 | 1 | 168 | 348 | 195 | 376 | 1.2e-106 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017932.t1 | A0A396H3I2 | 89.7 | 348 | 35 | 1 | 1 | 348 | 1 | 347 | 7.4e-158 | 566.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017932.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017932.t1 | MTR_1g093095 | 75.000 | 172 | 40 | 1 | 174 | 342 | 99 | 270 | 1.99e-97 | 291 |
| MS.gene017932.t1 | MTR_4g059870 | 33.540 | 161 | 90 | 5 | 184 | 343 | 61 | 205 | 5.17e-21 | 94.4 |
| MS.gene017932.t1 | MTR_1g016010 | 34.146 | 164 | 89 | 6 | 182 | 343 | 62 | 208 | 5.48e-21 | 94.0 |
| MS.gene017932.t1 | MTR_1g094115 | 35.526 | 152 | 78 | 7 | 187 | 336 | 56 | 189 | 1.46e-20 | 92.8 |
| MS.gene017932.t1 | MTR_1g094115 | 33.951 | 162 | 87 | 7 | 177 | 336 | 63 | 206 | 1.52e-20 | 92.8 |
| MS.gene017932.t1 | MTR_1g112270 | 33.540 | 161 | 89 | 6 | 177 | 336 | 60 | 203 | 1.97e-20 | 92.8 |
| MS.gene017932.t1 | MTR_1g112270 | 33.540 | 161 | 89 | 6 | 177 | 336 | 71 | 214 | 2.03e-20 | 92.8 |
| MS.gene017932.t1 | MTR_8g017210 | 33.333 | 159 | 86 | 6 | 184 | 340 | 85 | 225 | 3.01e-20 | 92.0 |
| MS.gene017932.t1 | MTR_2g099990 | 32.716 | 162 | 89 | 6 | 177 | 336 | 62 | 205 | 4.88e-20 | 91.3 |
| MS.gene017932.t1 | MTR_2g090745 | 34.091 | 176 | 96 | 8 | 163 | 336 | 9 | 166 | 1.25e-19 | 89.7 |
| MS.gene017932.t1 | MTR_2g093960 | 35.971 | 139 | 80 | 4 | 184 | 321 | 55 | 185 | 1.44e-19 | 89.4 |
| MS.gene017932.t1 | MTR_2g099990 | 33.117 | 154 | 83 | 6 | 185 | 336 | 1 | 136 | 5.03e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017932.t1 | AT3G57670 | 61.818 | 385 | 96 | 8 | 4 | 348 | 3 | 376 | 8.09e-142 | 407 |
| MS.gene017932.t1 | AT1G51220 | 54.722 | 360 | 125 | 8 | 1 | 345 | 1 | 337 | 1.31e-124 | 361 |
| MS.gene017932.t1 | AT3G20880 | 56.923 | 325 | 107 | 8 | 45 | 345 | 95 | 410 | 1.77e-119 | 351 |
| MS.gene017932.t1 | AT1G13290 | 68.868 | 212 | 40 | 4 | 119 | 328 | 54 | 241 | 1.04e-102 | 305 |
| MS.gene017932.t1 | AT1G34790 | 64.159 | 226 | 72 | 1 | 119 | 344 | 83 | 299 | 3.69e-101 | 300 |
| MS.gene017932.t1 | AT1G08290 | 75.148 | 169 | 38 | 2 | 174 | 338 | 164 | 332 | 3.01e-96 | 289 |
| MS.gene017932.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 184 | 326 | 28 | 176 | 2.91e-26 | 106 |
| MS.gene017932.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 184 | 326 | 238 | 386 | 8.35e-26 | 108 |
| MS.gene017932.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 184 | 326 | 238 | 386 | 8.35e-26 | 108 |
| MS.gene017932.t1 | AT5G22890 | 39.744 | 156 | 81 | 6 | 184 | 329 | 211 | 363 | 1.51e-23 | 100 |
| MS.gene017932.t1 | AT5G03150 | 33.333 | 165 | 93 | 5 | 184 | 347 | 76 | 224 | 6.04e-22 | 97.1 |
| MS.gene017932.t1 | AT1G55110 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| MS.gene017932.t1 | AT1G55110 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| MS.gene017932.t1 | AT1G55110 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| MS.gene017932.t1 | AT2G02070 | 33.540 | 161 | 89 | 5 | 177 | 336 | 68 | 211 | 1.85e-20 | 92.8 |
| MS.gene017932.t1 | AT2G02070 | 33.540 | 161 | 89 | 5 | 177 | 336 | 68 | 211 | 1.85e-20 | 92.8 |
| MS.gene017932.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene017932.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene017932.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene017932.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene017932.t1 | AT5G66730 | 35.032 | 157 | 82 | 7 | 182 | 336 | 53 | 191 | 3.07e-20 | 92.0 |
| MS.gene017932.t1 | AT1G14580 | 33.951 | 162 | 87 | 6 | 177 | 336 | 69 | 212 | 9.12e-20 | 90.5 |
| MS.gene017932.t1 | AT1G14580 | 33.951 | 162 | 87 | 6 | 177 | 336 | 69 | 212 | 9.12e-20 | 90.5 |
| MS.gene017932.t1 | AT1G14580 | 33.951 | 162 | 87 | 6 | 177 | 336 | 83 | 226 | 9.82e-20 | 90.5 |
| MS.gene017932.t1 | AT2G02080 | 34.641 | 153 | 82 | 5 | 185 | 336 | 1 | 136 | 1.65e-19 | 89.4 |
| MS.gene017932.t1 | AT2G02080 | 34.641 | 153 | 82 | 5 | 185 | 336 | 1 | 136 | 1.65e-19 | 89.4 |
| MS.gene017932.t1 | AT3G45260 | 35.065 | 154 | 83 | 5 | 184 | 336 | 62 | 199 | 2.98e-19 | 89.0 |
| MS.gene017932.t1 | AT3G45260 | 35.065 | 154 | 83 | 5 | 184 | 336 | 62 | 199 | 2.98e-19 | 89.0 |
| MS.gene017932.t1 | AT5G44160 | 31.515 | 165 | 95 | 5 | 184 | 347 | 21 | 168 | 1.13e-18 | 87.0 |
| MS.gene017932.t1 | AT5G60470 | 33.117 | 154 | 86 | 5 | 184 | 336 | 58 | 195 | 1.20e-18 | 87.0 |
| MS.gene017932.t1 | AT5G44160 | 31.515 | 165 | 95 | 5 | 184 | 347 | 60 | 207 | 1.31e-18 | 87.0 |
| MS.gene017932.t1 | AT5G60470 | 33.117 | 154 | 86 | 5 | 184 | 336 | 63 | 200 | 1.39e-18 | 87.0 |
| MS.gene017932.t1 | AT5G60470 | 33.117 | 154 | 86 | 5 | 184 | 336 | 67 | 204 | 1.40e-18 | 87.0 |
| MS.gene017932.t1 | AT4G02670 | 32.298 | 161 | 92 | 4 | 177 | 336 | 69 | 213 | 1.76e-18 | 86.3 |
| MS.gene017932.t1 | AT4G02670 | 32.298 | 161 | 92 | 4 | 177 | 336 | 71 | 215 | 1.89e-18 | 86.3 |
| MS.gene017932.t1 | AT3G50700 | 32.484 | 157 | 88 | 5 | 182 | 337 | 55 | 194 | 1.95e-18 | 86.3 |
| MS.gene017932.t1 | AT1G03840 | 32.298 | 161 | 91 | 6 | 177 | 336 | 55 | 198 | 3.31e-18 | 85.9 |
| MS.gene017932.t1 | AT1G03840 | 31.056 | 161 | 93 | 5 | 177 | 336 | 57 | 200 | 3.52e-18 | 85.9 |
| MS.gene017932.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 81 | 225 | 1.33e-17 | 84.3 |
| MS.gene017932.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 86 | 230 | 1.37e-17 | 84.3 |
| MS.gene017932.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 86 | 230 | 1.37e-17 | 84.3 |
| MS.gene017932.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 87 | 231 | 1.45e-17 | 84.0 |
| MS.gene017932.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 67 | 211 | 1.54e-17 | 84.0 |
| MS.gene017932.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 73 | 217 | 1.69e-17 | 84.0 |
| MS.gene017932.t1 | AT1G25250 | 29.496 | 139 | 88 | 5 | 182 | 317 | 54 | 185 | 1.78e-13 | 71.2 |
| MS.gene017932.t1 | AT1G25250 | 29.496 | 139 | 88 | 5 | 182 | 317 | 31 | 162 | 2.08e-13 | 70.9 |
| MS.gene017932.t1 | AT1G68130 | 30.935 | 139 | 85 | 5 | 182 | 317 | 62 | 192 | 3.79e-13 | 70.5 |
Find 72 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATTCATGGTTAATAAT+AGG | 0.242177 | 7.1:-15081397 | MS.gene017932:CDS |
| AAAGATCATATCAAAGCTTT+TGG | 0.279015 | 7.1:-15079479 | MS.gene017932:CDS |
| TGTGTGCCTCTTAGAGATTC+AGG | 0.280812 | 7.1:+15079764 | None:intergenic |
| GGAAGTGGACATGCTGCTTA+TGG | 0.286552 | 7.1:-15079458 | MS.gene017932:CDS |
| GTTGGTGAGGATTCTTGTTC+AGG | 0.320459 | 7.1:-15081416 | MS.gene017932:CDS |
| AAAAGAATTGTGGGAAGCTT+TGG | 0.349652 | 7.1:-15079544 | MS.gene017932:CDS |
| GAAGAGAAAAGATTAGAGTA+AGG | 0.352738 | 7.1:+15081869 | None:intergenic |
| GGATTCTTGTTCAGGATTCA+TGG | 0.360583 | 7.1:-15081408 | MS.gene017932:CDS |
| ATGATGATGATAGTGGAAAA+AGG | 0.364911 | 7.1:+15081739 | None:intergenic |
| AAACCCTAGTGCTGCTGAAA+TGG | 0.370039 | 7.1:-15081498 | MS.gene017932:CDS |
| GGCTTAACAAAGGACAATAT+TGG | 0.383450 | 7.1:-15081376 | MS.gene017932:CDS |
| CCTTGTTACTGTTGTGCACC+AGG | 0.388233 | 7.1:-15079719 | MS.gene017932:CDS |
| AGAGGTAGTTCTTCTCTTAG+AGG | 0.403255 | 7.1:+15081689 | None:intergenic |
| ACTCCTTCTCAGATTCTCAT+TGG | 0.410986 | 7.1:-15081347 | MS.gene017932:CDS |
| TCTTTGAGAGGCTTTGCTCT+TGG | 0.418075 | 7.1:+15079674 | None:intergenic |
| GAAGTGGACATGCTGCTTAT+GGG | 0.418215 | 7.1:-15079457 | MS.gene017932:CDS |
| ATTTCAGCAGCACTAGGGTT+TGG | 0.419339 | 7.1:+15081500 | None:intergenic |
| GATCTCTGAGGAGTTATTAG+AGG | 0.433036 | 7.1:+15081460 | None:intergenic |
| GAAGGGTTTGAATTTGAAGA+TGG | 0.443053 | 7.1:+15081812 | None:intergenic |
| AGGAAATATGATGATGATAG+TGG | 0.447261 | 7.1:+15081732 | None:intergenic |
| TTCCCTTTCTTCTAAATCCA+TGG | 0.448360 | 7.1:+15081580 | None:intergenic |
| AGACCTTCCTTGCACTGCCA+TGG | 0.468218 | 7.1:-15081597 | MS.gene017932:CDS |
| TGCCATGGATTTAGAAGAAA+GGG | 0.480220 | 7.1:-15081582 | MS.gene017932:CDS |
| TCTTGCTCTACTTCAGAAGC+TGG | 0.480582 | 7.1:+15079407 | None:intergenic |
| AGGAGAAGGTGGTGAAGAAG+AGG | 0.481051 | 7.1:+15081712 | None:intergenic |
| CTAAGAGGCACACAACCAAC+AGG | 0.487480 | 7.1:-15079755 | MS.gene017932:CDS |
| TTGTTGTGGTGGTGAAGAAA+AGG | 0.494029 | 7.1:+15081773 | None:intergenic |
| GAAGCCATTTCAGCAGCACT+AGG | 0.500052 | 7.1:+15081494 | None:intergenic |
| TCTTCTCTTAGAGGAGGAGA+AGG | 0.501187 | 7.1:+15081698 | None:intergenic |
| AAGAGAAAAGATTAGAGTAA+GGG | 0.501589 | 7.1:+15081870 | None:intergenic |
| GAACTCATGAAAAGAATTGT+GGG | 0.503233 | 7.1:-15079553 | MS.gene017932:CDS |
| AGAACTCATGAAAAGAATTG+TGG | 0.519976 | 7.1:-15079554 | MS.gene017932:CDS |
| TTAGAAGAAAGGGAAGAAGA+TGG | 0.524706 | 7.1:-15081572 | MS.gene017932:CDS |
| GTTACTGTTGCACTTCACAT+AGG | 0.528079 | 7.1:-15081527 | MS.gene017932:CDS |
| ATGAGAATCTGAGAAGGAGT+AGG | 0.530035 | 7.1:+15081350 | None:intergenic |
| TGTTGTGGTGGTGAAGAAAA+GGG | 0.533983 | 7.1:+15081774 | None:intergenic |
| CATGCTGCTTATGGGTGTGA+TGG | 0.534441 | 7.1:-15079449 | MS.gene017932:CDS |
| GTTGGAATTAGGCTTAAAAG+AGG | 0.534675 | 7.1:+15081671 | None:intergenic |
| CATGGATCACAGTACAGAAA+AGG | 0.538411 | 7.1:-15079788 | MS.gene017932:CDS |
| CTGCCATGGATTTAGAAGAA+AGG | 0.539425 | 7.1:-15081583 | MS.gene017932:CDS |
| AATCCATGGCAGTGCAAGGA+AGG | 0.544023 | 7.1:+15081594 | None:intergenic |
| AGGTATGGTTATTGTTGTTG+TGG | 0.546230 | 7.1:+15081759 | None:intergenic |
| GGTGGTGAAGAAAAGGGTGG+TGG | 0.550176 | 7.1:+15081780 | None:intergenic |
| TATGGTTATTGTTGTTGTGG+TGG | 0.558394 | 7.1:+15081762 | None:intergenic |
| AAGCTTTGGTATTGTATCTG+TGG | 0.559395 | 7.1:-15079530 | MS.gene017932:CDS |
| ACACATTACAAGAGGAAACA+TGG | 0.569309 | 7.1:-15079635 | MS.gene017932:CDS |
| ACAGGGCAAGAAAACTGAGT+TGG | 0.573007 | 7.1:+15081323 | None:intergenic |
| TGAGAATCTGAGAAGGAGTA+GGG | 0.575360 | 7.1:+15081351 | None:intergenic |
| AAAGGTCCTGAATCTCTAAG+AGG | 0.580235 | 7.1:-15079770 | MS.gene017932:CDS |
| AGTGTTCTAAAATCTTTGAG+AGG | 0.584894 | 7.1:+15079662 | None:intergenic |
| CTTGTTACTGTTGTGCACCA+GGG | 0.585436 | 7.1:-15079718 | MS.gene017932:CDS |
| AGAGTAAGGGTTATCAGCCA+TGG | 0.585920 | 7.1:+15081883 | None:intergenic |
| TCTCTTAGAGGAGGAGAAGG+TGG | 0.585932 | 7.1:+15081701 | None:intergenic |
| GGTAGTTCTTCTCTTAGAGG+AGG | 0.595867 | 7.1:+15081692 | None:intergenic |
| CACTTCAAACACATTACAAG+AGG | 0.601250 | 7.1:-15079643 | MS.gene017932:CDS |
| AAGCCATTTCAGCAGCACTA+GGG | 0.602433 | 7.1:+15081495 | None:intergenic |
| TCTAAATCCATGGCAGTGCA+AGG | 0.604858 | 7.1:+15081590 | None:intergenic |
| GGTAGCCTTAGCATTCCTGT+TGG | 0.607467 | 7.1:+15079740 | None:intergenic |
| TCAATGTTGTTTCTGCACCC+TGG | 0.610178 | 7.1:+15079701 | None:intergenic |
| CACAACCAACAGGAATGCTA+AGG | 0.612992 | 7.1:-15079745 | MS.gene017932:CDS |
| ATCACTGATAAAGAACATGT+TGG | 0.619011 | 7.1:-15081434 | MS.gene017932:CDS |
| CAATAGATATAACAACATGC+AGG | 0.621278 | 7.1:-15081285 | MS.gene017932:intron |
| GGACCAATGAGAATCTGAGA+AGG | 0.626496 | 7.1:+15081344 | None:intergenic |
| GTTAATAATAGGCTTAACAA+AGG | 0.627528 | 7.1:-15081386 | MS.gene017932:CDS |
| TGATAAAGAACATGTTGGTG+AGG | 0.633314 | 7.1:-15081429 | MS.gene017932:CDS |
| AGATCAACAAGAACATGAGG+TGG | 0.635764 | 7.1:-15081627 | MS.gene017932:CDS |
| CATGTGTAGAAAATGTAGCA+AGG | 0.640710 | 7.1:-15079600 | MS.gene017932:CDS |
| CCTGGTGCACAACAGTAACA+AGG | 0.646997 | 7.1:+15079719 | None:intergenic |
| TGAAGATCAACAAGAACATG+AGG | 0.648021 | 7.1:-15081630 | MS.gene017932:CDS |
| GTGTGATGGATTTGAAGAAG+AGG | 0.666362 | 7.1:-15079435 | MS.gene017932:CDS |
| TGTGGTGGTGAAGAAAAGGG+TGG | 0.675317 | 7.1:+15081777 | None:intergenic |
| ATCAGTGATAGTGATCTCTG+AGG | 0.722446 | 7.1:+15081448 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAATATTTTTTATTT+TGG | + | chr7.1:15081352-15081371 | None:intergenic | 0.0% |
| !! | AAAAATAAAATTGATTACTA+AGG | + | chr7.1:15081135-15081154 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAATTACAGTTT+TGG | - | chr7.1:15081003-15081022 | MS.gene017932:intron | 10.0% |
| !! | ATAGCATATATTAATTTCAT+TGG | - | chr7.1:15080408-15080427 | MS.gene017932:intron | 15.0% |
| !!! | TTTTAAACCTTGAATTATAA+AGG | + | chr7.1:15080099-15080118 | None:intergenic | 15.0% |
| !! | AATTTAGAGATAGAAAAATG+TGG | - | chr7.1:15080887-15080906 | MS.gene017932:intron | 20.0% |
| !! | AATTTGAAGATGGAAAAATA+TGG | + | chr7.1:15079459-15079478 | None:intergenic | 20.0% |
| !! | ATTAAACTATGGAAAAAAGA+AGG | + | chr7.1:15080792-15080811 | None:intergenic | 20.0% |
| !! | TATTAATGTACAATCATGAA+GGG | + | chr7.1:15081240-15081259 | None:intergenic | 20.0% |
| !! | TTATTAATGTACAATCATGA+AGG | + | chr7.1:15081241-15081260 | None:intergenic | 20.0% |
| !! | TTTCAAAAACTATTTCAAAC+AGG | - | chr7.1:15081109-15081128 | MS.gene017932:intron | 20.0% |
| !!! | AAAAACTAAAGAAGAGTTTT+TGG | + | chr7.1:15080964-15080983 | None:intergenic | 20.0% |
| !!! | AAAAATTTTCTGTTCTATAC+AGG | + | chr7.1:15080665-15080684 | None:intergenic | 20.0% |
| !!! | ATTTATTTTAATGATCGATC+TGG | + | chr7.1:15080699-15080718 | None:intergenic | 20.0% |
| !!! | GTCTTCAATTTTTTAGTTTT+GGG | - | chr7.1:15081031-15081050 | MS.gene017932:intron | 20.0% |
| !!! | TATAAGTCTTCTTTTTACAA+TGG | + | chr7.1:15081087-15081106 | None:intergenic | 20.0% |
| !!! | TCATATTTTTCTTGTTTTGT+TGG | + | chr7.1:15079628-15079647 | None:intergenic | 20.0% |
| !!! | TGTCTTCAATTTTTTAGTTT+TGG | - | chr7.1:15081030-15081049 | MS.gene017932:intron | 20.0% |
| ! | AAGAAAGTTATTGACAGAAA+AGG | + | chr7.1:15080167-15080186 | None:intergenic | 25.0% |
| ! | AAGAGAAAAGATTAGAGTAA+GGG | + | chr7.1:15079411-15079430 | None:intergenic | 25.0% |
| ! | ACAGATTTCAATGTAGTAAA+AGG | + | chr7.1:15080618-15080637 | None:intergenic | 25.0% |
| ! | AGAAAGTTATTGACAGAAAA+GGG | + | chr7.1:15080166-15080185 | None:intergenic | 25.0% |
| ! | AGTTTAGTCAATCAAAGAAA+AGG | + | chr7.1:15080574-15080593 | None:intergenic | 25.0% |
| ! | ATGGAAAAATATGGTTGAAT+TGG | + | chr7.1:15079450-15079469 | None:intergenic | 25.0% |
| ! | CAAAAAGAAAGAAATGAAAG+AGG | + | chr7.1:15080278-15080297 | None:intergenic | 25.0% |
| ! | GTTAATAATAGGCTTAACAA+AGG | - | chr7.1:15079892-15079911 | MS.gene017932:intron | 25.0% |
| ! | TAAAAAATTGTTCCTCTTTG+TGG | - | chr7.1:15080722-15080741 | MS.gene017932:intron | 25.0% |
| !! | AAAGATCATATCAAAGCTTT+TGG | - | chr7.1:15081799-15081818 | MS.gene017932:CDS | 25.0% |
| !! | GTTTTTATAGATGCATATGT+GGG | - | chr7.1:15081465-15081484 | MS.gene017932:CDS | 25.0% |
| !! | TTCAGTAGATCTTGATAATA+AGG | + | chr7.1:15081311-15081330 | None:intergenic | 25.0% |
| !! | TTCTGAAGAAAGAAAAAAGA+AGG | + | chr7.1:15080362-15080381 | None:intergenic | 25.0% |
| !! | TTTTTATAGATGCATATGTG+GGG | - | chr7.1:15081466-15081485 | MS.gene017932:CDS | 25.0% |
| !!! | TGTTTTTATAGATGCATATG+TGG | - | chr7.1:15081464-15081483 | MS.gene017932:CDS | 25.0% |
| !!! | TTTCTTGTTTTGTTGGAATT+AGG | + | chr7.1:15079621-15079640 | None:intergenic | 25.0% |
| AAAAAGAAGGCAAATTTGGA+TGG | + | chr7.1:15080779-15080798 | None:intergenic | 30.0% | |
| AGAACTCATGAAAAGAATTG+TGG | - | chr7.1:15081724-15081743 | MS.gene017932:CDS | 30.0% | |
| AGTCAATCAAAGAAAAGGAA+AGG | + | chr7.1:15080569-15080588 | None:intergenic | 30.0% | |
| ATCACTGATAAAGAACATGT+TGG | - | chr7.1:15079844-15079863 | MS.gene017932:intron | 30.0% | |
| ATTCATATATACTGAGAGAC+TGG | - | chr7.1:15080525-15080544 | MS.gene017932:intron | 30.0% | |
| ATTTGGATGGTATATTAGCA+TGG | + | chr7.1:15080766-15080785 | None:intergenic | 30.0% | |
| CAATAGATATAACAACATGC+AGG | - | chr7.1:15079993-15080012 | MS.gene017932:intron | 30.0% | |
| CACACTTCCTTTATAATTCA+AGG | - | chr7.1:15080089-15080108 | MS.gene017932:intron | 30.0% | |
| CAGGATTCATGGTTAATAAT+AGG | - | chr7.1:15079881-15079900 | MS.gene017932:intron | 30.0% | |
| GAAAGAAAAAAGAAGGAAAG+AGG | + | chr7.1:15080355-15080374 | None:intergenic | 30.0% | |
| GAACTCATGAAAAGAATTGT+GGG | - | chr7.1:15081725-15081744 | MS.gene017932:CDS | 30.0% | |
| GAAGAGAAAAGATTAGAGTA+AGG | + | chr7.1:15079412-15079431 | None:intergenic | 30.0% | |
| TCTCTCAGTATATATGAATC+AGG | + | chr7.1:15080524-15080543 | None:intergenic | 30.0% | |
| TGAAACAAAACAGAAGAACA+AGG | + | chr7.1:15080064-15080083 | None:intergenic | 30.0% | |
| TGAAGGGCAAAGATTTAATT+TGG | + | chr7.1:15081224-15081243 | None:intergenic | 30.0% | |
| TGGAAAAAAGAAGGCAAATT+TGG | + | chr7.1:15080783-15080802 | None:intergenic | 30.0% | |
| TTCATATATACTGAGAGACT+GGG | - | chr7.1:15080526-15080545 | MS.gene017932:intron | 30.0% | |
| ! | AATTTTCTGTTCTATACAGG+TGG | + | chr7.1:15080662-15080681 | None:intergenic | 30.0% |
| ! | AGCTAGTGTTAAATTTTGCA+TGG | - | chr7.1:15080467-15080486 | MS.gene017932:intron | 30.0% |
| ! | AGGAAATATGATGATGATAG+TGG | + | chr7.1:15079549-15079568 | None:intergenic | 30.0% |
| ! | ATTTTCTGTTCTATACAGGT+GGG | + | chr7.1:15080661-15080680 | None:intergenic | 30.0% |
| ! | CTACATTTTCTACACATGAA+TGG | + | chr7.1:15081676-15081695 | None:intergenic | 30.0% |
| ! | GTAGATCTTGATAATAAGGT+CGG | + | chr7.1:15081307-15081326 | None:intergenic | 30.0% |
| ! | GTTCTGATTTTAAACACAAG+AGG | - | chr7.1:15081770-15081789 | MS.gene017932:CDS | 30.0% |
| ! | TCAATGTAGTAAAAGGCATA+AGG | + | chr7.1:15080611-15080630 | None:intergenic | 30.0% |
| ! | TCCTTGATTTGAACCATTAA+CGG | - | chr7.1:15080186-15080205 | MS.gene017932:intron | 30.0% |
| ! | TTTTATAGATGCATATGTGG+GGG | - | chr7.1:15081467-15081486 | MS.gene017932:CDS | 30.0% |
| !! | AGTGTTCTAAAATCTTTGAG+AGG | + | chr7.1:15081619-15081638 | None:intergenic | 30.0% |
| !! | ATGATGATGATAGTGGAAAA+AGG | + | chr7.1:15079542-15079561 | None:intergenic | 30.0% |
| !!! | TGAAAGTTTTAGAGCAAACA+GGG | + | chr7.1:15079975-15079994 | None:intergenic | 30.0% |
| !!! | TTGAAAGTTTTAGAGCAAAC+AGG | + | chr7.1:15079976-15079995 | None:intergenic | 30.0% |
| !!! | TTTTGGAAAGTGTTTCAAAC+AGG | + | chr7.1:15080947-15080966 | None:intergenic | 30.0% |
| AAAAAGAAGGAAAGAGGTCA+AGG | + | chr7.1:15080349-15080368 | None:intergenic | 35.0% | |
| AAAAGAATTGTGGGAAGCTT+TGG | - | chr7.1:15081734-15081753 | MS.gene017932:CDS | 35.0% | |
| AAACAGAAGAACAAGGTCTT+TGG | + | chr7.1:15080057-15080076 | None:intergenic | 35.0% | |
| ACACATTACAAGAGGAAACA+TGG | - | chr7.1:15081643-15081662 | MS.gene017932:CDS | 35.0% | |
| ACCGTTAATGGTTCAAATCA+AGG | + | chr7.1:15080190-15080209 | None:intergenic | 35.0% | |
| CACTTCAAACACATTACAAG+AGG | - | chr7.1:15081635-15081654 | MS.gene017932:CDS | 35.0% | |
| CATGTGTAGAAAATGTAGCA+AGG | - | chr7.1:15081678-15081697 | MS.gene017932:CDS | 35.0% | |
| GAAGGGTTTGAATTTGAAGA+TGG | + | chr7.1:15079469-15079488 | None:intergenic | 35.0% | |
| GGCTTAACAAAGGACAATAT+TGG | - | chr7.1:15079902-15079921 | MS.gene017932:intron | 35.0% | |
| GTATATTAGCATGGTTGGAT+TGG | + | chr7.1:15080757-15080776 | None:intergenic | 35.0% | |
| GTTGGAATTAGGCTTAAAAG+AGG | + | chr7.1:15079610-15079629 | None:intergenic | 35.0% | |
| TGAAGATCAACAAGAACATG+AGG | - | chr7.1:15079648-15079667 | MS.gene017932:CDS | 35.0% | |
| TGATAAAGAACATGTTGGTG+AGG | - | chr7.1:15079849-15079868 | MS.gene017932:intron | 35.0% | |
| TGCCATGGATTTAGAAGAAA+GGG | - | chr7.1:15079696-15079715 | MS.gene017932:CDS | 35.0% | |
| TTAGAAGAAAGGGAAGAAGA+TGG | - | chr7.1:15079706-15079725 | MS.gene017932:CDS | 35.0% | |
| TTCCCTTTCTTCTAAATCCA+TGG | + | chr7.1:15079701-15079720 | None:intergenic | 35.0% | |
| ! | AAGCTTTGGTATTGTATCTG+TGG | - | chr7.1:15081748-15081767 | MS.gene017932:CDS | 35.0% |
| ! | AGAAAAGGAAAGGTGTAGTA+AGG | + | chr7.1:15080559-15080578 | None:intergenic | 35.0% |
| ! | AGGTATGGTTATTGTTGTTG+TGG | + | chr7.1:15079522-15079541 | None:intergenic | 35.0% |
| ! | GCTATAACTCTAGAAGAAAG+AGG | + | chr7.1:15080393-15080412 | None:intergenic | 35.0% |
| ! | TATGGTTATTGTTGTTGTGG+TGG | + | chr7.1:15079519-15079538 | None:intergenic | 35.0% |
| !! | CATATCAAAGCTTTTGGAAG+TGG | - | chr7.1:15081805-15081824 | MS.gene017932:CDS | 35.0% |
| !! | GATGATAGTGGAAAAAGGTA+TGG | + | chr7.1:15079537-15079556 | None:intergenic | 35.0% |
| AAAGGTCCTGAATCTCTAAG+AGG | - | chr7.1:15081508-15081527 | MS.gene017932:CDS | 40.0% | |
| AAGCATCAGAGAACCGTTAA+TGG | + | chr7.1:15080202-15080221 | None:intergenic | 40.0% | |
| ACTCCTTCTCAGATTCTCAT+TGG | - | chr7.1:15079931-15079950 | MS.gene017932:intron | 40.0% | |
| AGAGGTAGTTCTTCTCTTAG+AGG | + | chr7.1:15079592-15079611 | None:intergenic | 40.0% | |
| AGATCAACAAGAACATGAGG+TGG | - | chr7.1:15079651-15079670 | MS.gene017932:CDS | 40.0% | |
| ATGAGAATCTGAGAAGGAGT+AGG | + | chr7.1:15079931-15079950 | None:intergenic | 40.0% | |
| ATTAACGGTTCTCTGATGCT+TGG | - | chr7.1:15080201-15080220 | MS.gene017932:intron | 40.0% | |
| CATGGATCACAGTACAGAAA+AGG | - | chr7.1:15081490-15081509 | MS.gene017932:CDS | 40.0% | |
| CTGCCATGGATTTAGAAGAA+AGG | - | chr7.1:15079695-15079714 | MS.gene017932:CDS | 40.0% | |
| GGATGGTATATTAGCATGGT+TGG | + | chr7.1:15080762-15080781 | None:intergenic | 40.0% | |
| GGATTCTTGTTCAGGATTCA+TGG | - | chr7.1:15079870-15079889 | MS.gene017932:intron | 40.0% | |
| GTTACTGTTGCACTTCACAT+AGG | - | chr7.1:15079751-15079770 | MS.gene017932:CDS | 40.0% | |
| TCTGATGCTTGGATAGAAAG+AGG | - | chr7.1:15080212-15080231 | MS.gene017932:intron | 40.0% | |
| TGAGAATCTGAGAAGGAGTA+GGG | + | chr7.1:15079930-15079949 | None:intergenic | 40.0% | |
| ! | ATCAGTGATAGTGATCTCTG+AGG | + | chr7.1:15079833-15079852 | None:intergenic | 40.0% |
| ! | GATCTCTGAGGAGTTATTAG+AGG | + | chr7.1:15079821-15079840 | None:intergenic | 40.0% |
| ! | TGTTGTGGTGGTGAAGAAAA+GGG | + | chr7.1:15079507-15079526 | None:intergenic | 40.0% |
| ! | TTGTTGTGGTGGTGAAGAAA+AGG | + | chr7.1:15079508-15079527 | None:intergenic | 40.0% |
| !! | GTGTGATGGATTTGAAGAAG+AGG | - | chr7.1:15081843-15081862 | MS.gene017932:CDS | 40.0% |
| !!! | CTTTTGCTGTTAGAGGAGAT+TGG | - | chr7.1:15081701-15081720 | MS.gene017932:CDS | 40.0% |
| AAGCCATTTCAGCAGCACTA+GGG | + | chr7.1:15079786-15079805 | None:intergenic | 45.0% | |
| ACAGGGCAAGAAAACTGAGT+TGG | + | chr7.1:15079958-15079977 | None:intergenic | 45.0% | |
| AGAAGCAGAAGCAGAAGCAA+TGG | + | chr7.1:15080139-15080158 | None:intergenic | 45.0% | |
| ATTTCAGCAGCACTAGGGTT+TGG | + | chr7.1:15079781-15079800 | None:intergenic | 45.0% | |
| CACAACCAACAGGAATGCTA+AGG | - | chr7.1:15081533-15081552 | MS.gene017932:CDS | 45.0% | |
| CTTGTTACTGTTGTGCACCA+GGG | - | chr7.1:15081560-15081579 | MS.gene017932:CDS | 45.0% | |
| GGACCAATGAGAATCTGAGA+AGG | + | chr7.1:15079937-15079956 | None:intergenic | 45.0% | |
| GGTAGTTCTTCTCTTAGAGG+AGG | + | chr7.1:15079589-15079608 | None:intergenic | 45.0% | |
| TCTAAATCCATGGCAGTGCA+AGG | + | chr7.1:15079691-15079710 | None:intergenic | 45.0% | |
| TCTTCTCTTAGAGGAGGAGA+AGG | + | chr7.1:15079583-15079602 | None:intergenic | 45.0% | |
| TCTTGCTCTACTTCAGAAGC+TGG | + | chr7.1:15081874-15081893 | None:intergenic | 45.0% | |
| TGGACTAAGAAGCCACAAAG+AGG | + | chr7.1:15080737-15080756 | None:intergenic | 45.0% | |
| TGTGTGCCTCTTAGAGATTC+AGG | + | chr7.1:15081517-15081536 | None:intergenic | 45.0% | |
| ! | AAACCCTAGTGCTGCTGAAA+TGG | - | chr7.1:15079780-15079799 | MS.gene017932:CDS | 45.0% |
| ! | GAAGTGGACATGCTGCTTAT+GGG | - | chr7.1:15081821-15081840 | MS.gene017932:CDS | 45.0% |
| ! | GTTGGTGAGGATTCTTGTTC+AGG | - | chr7.1:15079862-15079881 | MS.gene017932:intron | 45.0% |
| ! | TCTTTGAGAGGCTTTGCTCT+TGG | + | chr7.1:15081607-15081626 | None:intergenic | 45.0% |
| !! | AGAAAAGGGTGGTGGTTTTG+TGG | + | chr7.1:15079493-15079512 | None:intergenic | 45.0% |
| !! | TCAATGTTGTTTCTGCACCC+TGG | + | chr7.1:15081580-15081599 | None:intergenic | 45.0% |
| !!! | AGCAAGGCTTTTGCTGTTAG+AGG | - | chr7.1:15081694-15081713 | MS.gene017932:CDS | 45.0% |
| !! | AATATAATTTAATTAAACTA+TGG | + | chr7.1:15080803-15080822 | None:intergenic | 5.0% |
| !!! | TTATTTTAAGAAATAATTTT+GGG | - | chr7.1:15080442-15080461 | MS.gene017932:intron | 5.0% |
| !!! | TTTATTTTAAGAAATAATTT+TGG | - | chr7.1:15080441-15080460 | MS.gene017932:intron | 5.0% |
| AATCCATGGCAGTGCAAGGA+AGG | + | chr7.1:15079687-15079706 | None:intergenic | 50.0% | |
| AGGAGAAGGTGGTGAAGAAG+AGG | + | chr7.1:15079569-15079588 | None:intergenic | 50.0% | |
| CCTGGTGCACAACAGTAACA+AGG | + | chr7.1:15081562-15081581 | None:intergenic | 50.0% | |
| CCTTGTTACTGTTGTGCACC+AGG | - | chr7.1:15081559-15081578 | MS.gene017932:CDS | 50.0% | |
| GAAGCCATTTCAGCAGCACT+AGG | + | chr7.1:15079787-15079806 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | - | chr7.1:15081472-15081491 | MS.gene017932:CDS | 50.0% | |
| TCTCTTAGAGGAGGAGAAGG+TGG | + | chr7.1:15079580-15079599 | None:intergenic | 50.0% | |
| ! | CATGCTGCTTATGGGTGTGA+TGG | - | chr7.1:15081829-15081848 | MS.gene017932:CDS | 50.0% |
| ! | CTAAGAGGCACACAACCAAC+AGG | - | chr7.1:15081523-15081542 | MS.gene017932:CDS | 50.0% |
| ! | GGAAGTGGACATGCTGCTTA+TGG | - | chr7.1:15081820-15081839 | MS.gene017932:CDS | 50.0% |
| ! | GGTAGCCTTAGCATTCCTGT+TGG | + | chr7.1:15081541-15081560 | None:intergenic | 50.0% |
| ! | TGTGGTGGTGAAGAAAAGGG+TGG | + | chr7.1:15079504-15079523 | None:intergenic | 50.0% |
| !!! | GGTGGTGGTTTTGTGGAGAA+GGG | + | chr7.1:15079486-15079505 | None:intergenic | 50.0% |
| AGACCTTCCTTGCACTGCCA+TGG | - | chr7.1:15079681-15079700 | MS.gene017932:CDS | 55.0% | |
| GGTGGTGAAGAAAAGGGTGG+TGG | + | chr7.1:15079501-15079520 | None:intergenic | 55.0% | |
| !!! | GGGTGGTGGTTTTGTGGAGA+AGG | + | chr7.1:15079487-15079506 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 15079397 | 15081903 | 15079397 | ID=MS.gene017932 |
| chr7.1 | mRNA | 15079397 | 15081903 | 15079397 | ID=MS.gene017932.t1;Parent=MS.gene017932 |
| chr7.1 | exon | 15081286 | 15081903 | 15081286 | ID=MS.gene017932.t1.exon1;Parent=MS.gene017932.t1 |
| chr7.1 | CDS | 15081286 | 15081903 | 15081286 | ID=cds.MS.gene017932.t1;Parent=MS.gene017932.t1 |
| chr7.1 | exon | 15079397 | 15079825 | 15079397 | ID=MS.gene017932.t1.exon2;Parent=MS.gene017932.t1 |
| chr7.1 | CDS | 15079397 | 15079825 | 15079397 | ID=cds.MS.gene017932.t1;Parent=MS.gene017932.t1 |
| Gene Sequence |
| Protein sequence |
