AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017946

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017946.t1 MTR_7g092540 91.760 267 20 1 1 267 55 319 0.0 506
MS.gene017946.t1 MTR_7g092540 90.551 254 22 1 1 254 55 306 5.00e-171 474
MS.gene017946.t1 MTR_1g052470 55.725 262 80 5 32 263 115 370 3.40e-83 254
MS.gene017946.t1 MTR_4g065870 38.314 261 132 3 33 267 174 431 4.26e-49 167
MS.gene017946.t1 MTR_2g098310 41.791 268 105 9 35 267 157 408 1.39e-48 166
MS.gene017946.t1 MTR_1g052470 50.725 207 66 5 32 208 115 315 2.44e-48 162
MS.gene017946.t1 MTR_6g052280 85.882 85 12 0 150 234 13 97 6.63e-45 148
MS.gene017946.t1 MTR_2g098310 42.188 256 97 9 35 255 157 396 1.11e-44 155
MS.gene017946.t1 MTR_3g028520 39.149 235 126 4 40 263 166 394 1.63e-42 150
MS.gene017946.t1 MTR_3g027650 39.149 235 126 4 40 263 166 394 1.63e-42 150
MS.gene017946.t1 MTR_4g065870 37.398 246 125 3 33 252 174 416 2.94e-42 149
MS.gene017946.t1 MTR_2g098310 36.634 303 106 10 35 267 157 443 1.71e-41 148
MS.gene017946.t1 MTR_3g027650 39.556 225 119 4 40 253 166 384 1.35e-38 139
MS.gene017946.t1 MTR_8g036235 35.430 302 139 5 2 263 103 388 1.27e-34 129
MS.gene017946.t1 MTR_4g033295 69.620 79 24 0 185 263 112 190 7.11e-34 122
MS.gene017946.t1 MTR_2g098310 38.889 234 92 9 35 233 157 374 1.78e-31 120
MS.gene017946.t1 MTR_4g033295 74.286 70 18 0 185 254 112 181 2.79e-30 112
MS.gene017946.t1 MTR_1g116790 50.407 123 58 2 146 267 221 341 4.69e-30 115
MS.gene017946.t1 MTR_4g065870 33.184 223 120 3 33 229 174 393 7.55e-29 113
MS.gene017946.t1 MTR_3g027650 35.821 201 112 4 40 229 166 360 4.27e-25 102
MS.gene017946.t1 MTR_4g033295 84.444 45 7 0 185 229 112 156 7.23e-20 84.7
MS.gene017946.t1 MTR_8g036235 32.090 268 126 5 2 229 103 354 9.20e-18 82.4
MS.gene017946.t1 MTR_2g098310 34.928 209 85 9 35 208 157 349 2.68e-17 80.9
MS.gene017946.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.28e-16 78.2
MS.gene017946.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.34e-16 78.2
MS.gene017946.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.88e-16 77.8
MS.gene017946.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.99e-16 77.8
MS.gene017946.t1 MTR_4g131160 54.412 68 30 1 191 258 196 262 5.02e-16 77.4
MS.gene017946.t1 MTR_4g131160 54.412 68 30 1 191 258 199 265 5.54e-16 77.4
MS.gene017946.t1 MTR_1g080890 50.667 75 36 1 184 258 186 259 1.35e-15 75.9
MS.gene017946.t1 MTR_5g048860 50.000 74 37 0 191 264 365 438 1.99e-15 76.3
MS.gene017946.t1 MTR_3g498825 53.731 67 31 0 191 257 147 213 3.32e-15 74.7
MS.gene017946.t1 MTR_7g053410 48.649 74 38 0 191 264 317 390 5.86e-15 74.7
MS.gene017946.t1 MTR_7g053410 48.649 74 38 0 191 264 317 390 7.34e-15 74.3
MS.gene017946.t1 MTR_3g116770 52.174 69 33 0 191 259 191 259 1.26e-14 73.2
MS.gene017946.t1 MTR_3g116770 50.000 74 37 0 191 264 191 264 1.26e-14 73.2
MS.gene017946.t1 MTR_8g065740 50.725 69 34 0 191 259 305 373 1.92e-14 73.2
MS.gene017946.t1 MTR_8g012290 45.946 74 40 0 191 264 291 364 2.86e-14 72.4
MS.gene017946.t1 MTR_8g012290 45.946 74 40 0 191 264 291 364 2.89e-14 72.4
MS.gene017946.t1 MTR_8g099880 49.275 69 35 0 191 259 145 213 9.40e-14 70.5
MS.gene017946.t1 MTR_4g070320 47.368 76 38 1 184 259 138 211 1.17e-13 70.1
MS.gene017946.t1 MTR_8g062240 47.761 67 35 0 191 257 151 217 6.73e-13 67.4
MS.gene017946.t1 MTR_7g092510 41.892 74 43 0 191 264 173 246 1.28e-11 64.3
MS.gene017946.t1 MTR_5g037250 46.269 67 36 0 191 257 112 178 1.48e-11 63.2
MS.gene017946.t1 MTR_1g018090 53.846 65 29 1 192 256 275 338 2.95e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017946.t1 AT2G42280 48.548 241 105 6 36 267 125 355 1.04e-49 167
MS.gene017946.t1 AT2G42280 48.899 227 97 6 36 253 125 341 1.72e-43 151
MS.gene017946.t1 AT1G51140 57.983 119 43 3 145 263 265 376 9.84e-40 142
MS.gene017946.t1 AT2G43140 57.143 105 44 1 160 263 102 206 4.18e-35 125
MS.gene017946.t1 AT2G43140 57.143 105 44 1 160 263 199 303 1.57e-34 126
MS.gene017946.t1 AT1G35460 61.176 85 33 0 183 267 173 257 1.15e-32 120
MS.gene017946.t1 AT1G05805 56.731 104 43 2 161 263 253 355 4.17e-31 119
MS.gene017946.t1 AT4G09180 59.341 91 35 1 177 267 172 260 2.04e-30 114
MS.gene017946.t1 AT1G35460 76.596 47 11 0 183 229 173 219 2.64e-18 81.6
MS.gene017946.t1 AT2G24260 51.282 78 37 1 181 258 25 101 2.01e-16 77.0
MS.gene017946.t1 AT5G58010 54.412 68 30 1 191 258 99 165 4.12e-16 77.0
MS.gene017946.t1 AT2G24260 51.282 78 37 1 181 258 128 204 4.50e-16 77.4
MS.gene017946.t1 AT2G42280 40.659 182 89 6 36 208 125 296 1.28e-15 75.5
MS.gene017946.t1 AT4G30980 54.412 68 30 1 191 258 130 196 1.74e-15 75.1
MS.gene017946.t1 AT4G30980 54.412 68 30 1 191 258 178 244 2.05e-15 75.5
MS.gene017946.t1 AT1G10120 53.623 69 32 0 191 259 206 274 2.70e-15 75.1
MS.gene017946.t1 AT1G10120 53.623 69 32 0 191 259 206 274 2.70e-15 75.1
MS.gene017946.t1 AT4G34530 48.649 74 38 0 191 264 172 245 5.01e-15 74.3
MS.gene017946.t1 AT5G50915 53.731 67 31 0 191 257 136 202 7.43e-15 73.2
MS.gene017946.t1 AT5G50915 53.731 67 31 0 191 257 136 202 7.43e-15 73.2
MS.gene017946.t1 AT5G50915 53.731 67 31 0 191 257 136 202 8.01e-15 72.8
MS.gene017946.t1 AT5G50915 53.731 67 31 0 191 257 136 202 8.01e-15 72.8
MS.gene017946.t1 AT1G68920 50.725 69 34 0 191 259 302 370 8.03e-15 74.3
MS.gene017946.t1 AT1G68920 50.725 69 34 0 191 259 303 371 8.19e-15 74.3
MS.gene017946.t1 AT1G68920 50.725 69 34 0 191 259 303 371 8.19e-15 74.3
MS.gene017946.t1 AT1G68920 50.725 69 34 0 191 259 303 371 8.19e-15 74.3
MS.gene017946.t1 AT3G07340 47.297 74 39 0 191 264 258 331 2.49e-14 72.8
MS.gene017946.t1 AT3G07340 47.297 74 39 0 191 264 258 331 2.69e-14 72.4
MS.gene017946.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.34e-14 72.0
MS.gene017946.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.34e-14 72.0
MS.gene017946.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.34e-14 72.0
MS.gene017946.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.34e-14 72.0
MS.gene017946.t1 AT1G26260 52.239 67 32 0 191 257 172 238 3.46e-14 71.6
MS.gene017946.t1 AT1G26260 52.239 67 32 0 191 257 201 267 3.54e-14 72.0
MS.gene017946.t1 AT1G25330 47.761 67 35 0 191 257 104 170 7.62e-14 69.3
MS.gene017946.t1 AT5G48560 49.254 67 34 0 191 257 301 367 2.31e-13 70.1
MS.gene017946.t1 AT5G48560 49.254 67 34 0 191 257 301 367 2.35e-13 69.7
MS.gene017946.t1 AT3G23690 45.946 74 40 0 191 264 191 264 3.37e-13 68.9
MS.gene017946.t1 AT4G36540 44.156 77 41 1 181 257 133 207 5.48e-13 68.2
MS.gene017946.t1 AT4G36540 44.156 77 41 1 181 257 133 207 5.78e-13 67.8
MS.gene017946.t1 AT1G18400 47.761 67 35 0 191 257 145 211 1.23e-12 66.2
MS.gene017946.t1 AT1G18400 47.761 67 35 0 191 257 145 211 2.17e-12 65.9
MS.gene017946.t1 AT2G18300 46.377 69 37 0 191 259 185 253 2.35e-12 66.6
MS.gene017946.t1 AT1G59640 47.761 67 35 0 191 257 136 202 2.51e-12 65.9
MS.gene017946.t1 AT2G18300 46.377 69 37 0 191 259 185 253 2.63e-12 66.2
MS.gene017946.t1 AT2G42300 43.243 74 42 0 191 264 185 258 2.88e-12 66.2
MS.gene017946.t1 AT3G57800 43.243 74 42 0 191 264 204 277 3.10e-12 66.2
MS.gene017946.t1 AT2G18300 46.377 69 37 0 191 259 185 253 3.30e-12 66.2
MS.gene017946.t1 AT1G73830 44.776 67 37 0 191 257 147 213 3.63e-12 65.1
MS.gene017946.t1 AT1G73830 44.776 67 37 0 191 257 147 213 4.03e-12 65.1
MS.gene017946.t1 AT2G42300 43.243 74 42 0 191 264 185 258 4.93e-12 65.1
MS.gene017946.t1 AT1G59640 47.761 67 35 0 191 257 136 202 7.86e-12 65.1
MS.gene017946.t1 AT5G62610 44.776 67 37 0 191 257 153 219 1.85e-11 63.5
MS.gene017946.t1 AT5G62610 44.776 67 37 0 191 257 153 219 1.85e-11 63.5
MS.gene017946.t1 AT2G14760 53.846 65 29 1 192 256 238 301 3.41e-11 63.2

Find 51 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCACCTTTATGATTAAA+AGG 0.243027 7.1:+14828448 None:intergenic
CTCAAGGAAGAAGGACTTCT+TGG 0.270896 7.1:+14827425 None:intergenic
CTTTATGATTAAAAGGATTA+TGG 0.272914 7.1:+14828455 None:intergenic
AACATATTGAACAATCAAAT+TGG 0.290694 7.1:-14827455 MS.gene017946:CDS
ACCCTTTCGGCAAGGCTTCT+AGG 0.305032 7.1:+14827028 None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG 0.326997 7.1:+14827015 None:intergenic
ATGCTGCTCGGAACAGAATC+TGG 0.330247 7.1:+14827079 None:intergenic
AATGTTTATTGTGGAGAATT+TGG 0.338878 7.1:-14827110 MS.gene017946:CDS
AATGAGGATGCTCAATATTA+TGG 0.342968 7.1:-14827323 MS.gene017946:CDS
ATTCTGACCTTATCAATGTT+TGG 0.345820 7.1:+14826956 None:intergenic
AACAACAACATCATCTCCTT+TGG 0.393746 7.1:-14828298 MS.gene017946:CDS
TCCTAGAAGCCTTGCCGAAA+GGG 0.399735 7.1:-14827029 MS.gene017946:CDS
AACATCATCTCCTTTGGAAA+TGG 0.414195 7.1:-14828292 MS.gene017946:intron
CTCTTTGCTCTGATGCTGCT+CGG 0.438402 7.1:+14827067 None:intergenic
ACCACTCTGTCTTAAAAGAT+TGG 0.442108 7.1:+14828342 None:intergenic
AAAGGAGATGATGTTGTTGT+TGG 0.459546 7.1:+14828300 None:intergenic
TCGGAACAGAATCTGGAAAC+TGG 0.461159 7.1:+14827086 None:intergenic
CATTTATGATTCTAATGACC+AGG 0.461256 7.1:-14827291 MS.gene017946:intron
GGTTGTTCCAAACATTGATA+AGG 0.462084 7.1:-14826963 MS.gene017946:intron
AGACAGAGTGGTTCCCATGC+TGG 0.479729 7.1:-14828331 MS.gene017946:CDS
AAAGGTGTTGAAAACTATGA+TGG 0.487777 7.1:-14827515 MS.gene017946:CDS
CACATCAGAAATGTTAGACT+TGG 0.499859 7.1:-14826837 MS.gene017946:CDS
AAGACACATGAATTCTCAGC+AGG 0.502231 7.1:-14828398 MS.gene017946:CDS
TTCTCAGCAGGGTTATAGAA+TGG 0.503073 7.1:-14828386 MS.gene017946:CDS
ATCATCAGAAATGTTTATTG+TGG 0.507405 7.1:-14827119 MS.gene017946:CDS
TTGATGTTACTCAGAACGTA+GGG 0.512000 7.1:-14827192 MS.gene017946:intron
GATAACATTCTCAAGGAAGA+AGG 0.538937 7.1:+14827416 None:intergenic
ATCCTAGAAGCCTTGCCGAA+AGG 0.543719 7.1:-14827030 MS.gene017946:CDS
AACTCTAAAACGAGGAGTGA+TGG 0.547308 7.1:-14827389 MS.gene017946:CDS
TTCTTCTTACCCTTTCGGCA+AGG 0.550067 7.1:+14827020 None:intergenic
CCGAAAGGGTAAGAAGAACT+CGG 0.565752 7.1:-14827015 MS.gene017946:CDS
CTCCTTGTCTTCGATCATCA+CGG 0.577461 7.1:+14827351 None:intergenic
AAAACGAGGAGTGATGGCAT+TGG 0.578334 7.1:-14827383 MS.gene017946:CDS
GCAGGGTATGAATCTATGAA+AGG 0.606763 7.1:-14827533 MS.gene017946:intron
TTTGATGTTACTCAGAACGT+AGG 0.607876 7.1:-14827193 MS.gene017946:intron
AAGGTGTTGAAAACTATGAT+GGG 0.612325 7.1:-14827514 MS.gene017946:CDS
GTTATGTGATAACATTCTCA+AGG 0.612399 7.1:+14827409 None:intergenic
TACTACAATACCATTTCCAA+AGG 0.613692 7.1:+14828282 None:intergenic
AGCAGCATCAGAGCAAAGAG+AGG 0.624459 7.1:-14827064 MS.gene017946:CDS
ACGAATGAGAAAATTGCAAG+AGG 0.630200 7.1:-14826984 MS.gene017946:CDS
TATAGAATGGATCAACACAA+AGG 0.657311 7.1:-14828373 MS.gene017946:CDS
AGCCGTGATGATCGAAGACA+AGG 0.662100 7.1:-14827353 MS.gene017946:CDS
GTTGGAGAAATGACCAGCAT+GGG 0.675608 7.1:+14828318 None:intergenic
TGTTGGAGAAATGACCAGCA+TGG 0.677077 7.1:+14828317 None:intergenic
CGTGATGATCGAAGACAAGG+AGG 0.691311 7.1:-14827350 MS.gene017946:CDS
AGACACATGAATTCTCAGCA+GGG 0.696388 7.1:-14828397 MS.gene017946:CDS
GATGGGGTGAATGACAGTGA+TGG 0.701721 7.1:-14827497 MS.gene017946:CDS
TGATGTTACTCAGAACGTAG+GGG 0.704763 7.1:-14827191 MS.gene017946:intron
AAGACAAGGAGGTAGCAATG+AGG 0.720936 7.1:-14827339 MS.gene017946:CDS
AGGTGTTGAAAACTATGATG+GGG 0.756832 7.1:-14827513 MS.gene017946:CDS
TATCACATAACTCTAAAACG+AGG 0.781502 7.1:-14827397 MS.gene017946:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAACATAACTTTTTTT+AGG - chr7.1:14826933-14826952 MS.gene017946:intron 10.0%
!! AAAAAAGTTATTTATGTACA+AGG - chr7.1:14827140-14827159 MS.gene017946:CDS 15.0%
!! AAAAACATAATTGTCTTAAA+AGG + chr7.1:14828014-14828033 None:intergenic 15.0%
!! AAAAAGTTATTTATGTACAA+GGG - chr7.1:14827141-14827160 MS.gene017946:CDS 15.0%
!! AAAACATAATTGTCTTAAAA+GGG + chr7.1:14828013-14828032 None:intergenic 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG - chr7.1:14826967-14826986 MS.gene017946:CDS 15.0%
!! TGCTAAATCTAAAAAAAAAA+TGG - chr7.1:14826966-14826985 MS.gene017946:CDS 15.0%
!! TTATCATTAAGAATAGAATT+CGG - chr7.1:14827008-14827027 MS.gene017946:CDS 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG - chr7.1:14828044-14828063 MS.gene017946:intron 15.0%
!! AAACATAATTGTCTTAAAAG+GGG + chr7.1:14828012-14828031 None:intergenic 20.0%
!! AAATAACTTATGTAACTACA+AGG + chr7.1:14827105-14827124 None:intergenic 20.0%
!! AACAATTTCTGTCTAATTTA+TGG - chr7.1:14827193-14827212 MS.gene017946:intron 20.0%
!! AACATATTGAACAATCAAAT+TGG - chr7.1:14827460-14827479 MS.gene017946:CDS 20.0%
!! AGATCTTCAAAAACAATTAA+AGG - chr7.1:14828117-14828136 MS.gene017946:intron 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr7.1:14828285-14828304 MS.gene017946:intron 20.0%
!! CTTAAAATATATATTAGTGC+AGG + chr7.1:14828219-14828238 None:intergenic 20.0%
!! CTTTATGATTAAAAGGATTA+TGG + chr7.1:14826463-14826482 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG - chr7.1:14826908-14826927 MS.gene017946:intron 20.0%
!!! CATAATCCTTTTAATCATAA+AGG - chr7.1:14826461-14826480 MS.gene017946:CDS 20.0%
!!! CTGCACTAATATATATTTTA+AGG - chr7.1:14828217-14828236 MS.gene017946:intron 20.0%
! AACATAATTGTCTTAAAAGG+GGG + chr7.1:14828011-14828030 None:intergenic 25.0%
! AATGCAAAATTGCTCTATTT+AGG - chr7.1:14828349-14828368 MS.gene017946:CDS 25.0%
! AATGTTTATTGTGGAGAATT+TGG - chr7.1:14827805-14827824 MS.gene017946:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG + chr7.1:14826868-14826887 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG - chr7.1:14827796-14827815 MS.gene017946:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG - chr7.1:14827365-14827384 MS.gene017946:CDS 25.0%
! TGCATATAAATGTAAATTGC+AGG - chr7.1:14827364-14827383 MS.gene017946:CDS 25.0%
! TTGTCACCTTTATGATTAAA+AGG + chr7.1:14826470-14826489 None:intergenic 25.0%
!! AACATTTCTGATGATTTTCT+TGG + chr7.1:14827791-14827810 None:intergenic 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG + chr7.1:14828350-14828369 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG - chr7.1:14826711-14826730 MS.gene017946:intron 25.0%
!!! ATTCTATTTTAAGAAAGCGT+AGG + chr7.1:14826766-14826785 None:intergenic 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG - chr7.1:14826826-14826845 MS.gene017946:CDS 25.0%
!!! TTCTATTTTAAGAAAGCGTA+GGG + chr7.1:14826765-14826784 None:intergenic 25.0%
AAGTTAACCTGTTATATACC+TGG + chr7.1:14827645-14827664 None:intergenic 30.0%
AAGTTATTTATGTACAAGGG+AGG - chr7.1:14827144-14827163 MS.gene017946:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG - chr7.1:14827592-14827611 MS.gene017946:intron 30.0%
AATTGCGAATCAGCAAAATT+AGG + chr7.1:14827703-14827722 None:intergenic 30.0%
ACTAATCATGATTAACTGCA+TGG + chr7.1:14828191-14828210 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG + chr7.1:14827962-14827981 None:intergenic 30.0%
CATTTATGATTCTAATGACC+AGG - chr7.1:14827624-14827643 MS.gene017946:intron 30.0%
CTAATGTGATTCATATTGCT+AGG + chr7.1:14827318-14827337 None:intergenic 30.0%
GATTCAAATCATGAGATAGT+AGG - chr7.1:14827232-14827251 MS.gene017946:intron 30.0%
GTTATGTGATAACATTCTCA+AGG + chr7.1:14827509-14827528 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG + chr7.1:14828179-14828198 None:intergenic 30.0%
TACTACAATACCATTTCCAA+AGG + chr7.1:14826636-14826655 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG + chr7.1:14827684-14827703 None:intergenic 30.0%
TATAGAATGGATCAACACAA+AGG - chr7.1:14826542-14826561 MS.gene017946:intron 30.0%
TTAACTGCATGGAAATGAAT+AGG + chr7.1:14828180-14828199 None:intergenic 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG - chr7.1:14827400-14827419 MS.gene017946:CDS 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG - chr7.1:14827401-14827420 MS.gene017946:CDS 30.0%
!! TATCACATAACTCTAAAACG+AGG - chr7.1:14827518-14827537 MS.gene017946:CDS 30.0%
AAAGGAGATGATGTTGTTGT+TGG + chr7.1:14826618-14826637 None:intergenic 35.0%
AAATGCTAAACAAGCATAGG+TGG - chr7.1:14827267-14827286 MS.gene017946:intron 35.0%
AACAACAACATCATCTCCTT+TGG - chr7.1:14826617-14826636 MS.gene017946:intron 35.0%
AACTGCATGGAAATGAATAG+GGG + chr7.1:14828178-14828197 None:intergenic 35.0%
ACCACTCTGTCTTAAAAGAT+TGG + chr7.1:14826576-14826595 None:intergenic 35.0%
ACGAATGAGAAAATTGCAAG+AGG - chr7.1:14827931-14827950 MS.gene017946:intron 35.0%
CACAAATGCTAAACAAGCAT+AGG - chr7.1:14827264-14827283 MS.gene017946:intron 35.0%
CACATCAGAAATGTTAGACT+TGG - chr7.1:14828078-14828097 MS.gene017946:intron 35.0%
CTAATGACCAGGTATATAAC+AGG - chr7.1:14827635-14827654 MS.gene017946:intron 35.0%
CTATGCTTGTTTAGCATTTG+TGG + chr7.1:14827266-14827285 None:intergenic 35.0%
GATAACATTCTCAAGGAAGA+AGG + chr7.1:14827502-14827521 None:intergenic 35.0%
GGTTGTTCCAAACATTGATA+AGG - chr7.1:14827952-14827971 MS.gene017946:intron 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr7.1:14828259-14828278 None:intergenic 35.0%
TTGATGTTACTCAGAACGTA+GGG - chr7.1:14827723-14827742 MS.gene017946:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG - chr7.1:14827722-14827741 MS.gene017946:intron 35.0%
! AACATCATCTCCTTTGGAAA+TGG - chr7.1:14826623-14826642 MS.gene017946:intron 35.0%
! CTAGTTCGATGTTTCTTTTG+GGG - chr7.1:14826734-14826753 MS.gene017946:intron 35.0%
! GCTAGTTCGATGTTTCTTTT+GGG - chr7.1:14826733-14826752 MS.gene017946:intron 35.0%
! TAGTTCGATGTTTCTTTTGG+GGG - chr7.1:14826735-14826754 MS.gene017946:intron 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG - chr7.1:14828242-14828261 MS.gene017946:intron 35.0%
!! AGGTGTTGAAAACTATGATG+GGG - chr7.1:14827402-14827421 MS.gene017946:CDS 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG - chr7.1:14826572-14826591 MS.gene017946:intron 35.0%
AAGACACATGAATTCTCAGC+AGG - chr7.1:14826517-14826536 MS.gene017946:intron 40.0%
AGACACATGAATTCTCAGCA+GGG - chr7.1:14826518-14826537 MS.gene017946:intron 40.0%
CTAAGTCTAACGCTATTCGT+TGG + chr7.1:14827069-14827088 None:intergenic 40.0%
GCAGGGTATGAATCTATGAA+AGG - chr7.1:14827382-14827401 MS.gene017946:CDS 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr7.1:14828260-14828279 None:intergenic 40.0%
GTGAATATAGTGGTCAGCTA+AGG - chr7.1:14826836-14826855 MS.gene017946:CDS 40.0%
TATAGTGGTCAGCTAAGGTT+TGG - chr7.1:14826841-14826860 MS.gene017946:CDS 40.0%
TGATGTTACTCAGAACGTAG+GGG - chr7.1:14827724-14827743 MS.gene017946:intron 40.0%
TTCTCAGCAGGGTTATAGAA+TGG - chr7.1:14826529-14826548 MS.gene017946:intron 40.0%
TTGCTTAACATGTGCCCTAA+GGG - chr7.1:14828372-14828391 MS.gene017946:CDS 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG - chr7.1:14827526-14827545 MS.gene017946:CDS 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr7.1:14828389-14828408 None:intergenic 40.0%
!! GGCTAGTTCGATGTTTCTTT+TGG - chr7.1:14826732-14826751 MS.gene017946:intron 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr7.1:14828390-14828409 None:intergenic 40.0%
AAAACGAGGAGTGATGGCAT+TGG - chr7.1:14827532-14827551 MS.gene017946:CDS 45.0%
AAGACAAGGAGGTAGCAATG+AGG - chr7.1:14827576-14827595 MS.gene017946:intron 45.0%
CCGAAAGGGTAAGAAGAACT+CGG - chr7.1:14827900-14827919 MS.gene017946:intron 45.0%
CCGAGTTCTTCTTACCCTTT+CGG + chr7.1:14827903-14827922 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG + chr7.1:14827493-14827512 None:intergenic 45.0%
CTCCTTGTCTTCGATCATCA+CGG + chr7.1:14827567-14827586 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr7.1:14828371-14828390 MS.gene017946:CDS 45.0%
GTTGGAGAAATGACCAGCAT+GGG + chr7.1:14826600-14826619 None:intergenic 45.0%
TCGGAACAGAATCTGGAAAC+TGG + chr7.1:14827832-14827851 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG + chr7.1:14826601-14826620 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG + chr7.1:14827898-14827917 None:intergenic 45.0%
!!! TTAACTTTTTTTTTTTTATT+AGG - chr7.1:14827658-14827677 MS.gene017946:intron 5.0%
AGCAGCATCAGAGCAAAGAG+AGG - chr7.1:14827851-14827870 MS.gene017946:intron 50.0%
AGCCGTGATGATCGAAGACA+AGG - chr7.1:14827562-14827581 MS.gene017946:intron 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG - chr7.1:14827885-14827904 MS.gene017946:intron 50.0%
ATGCTGCTCGGAACAGAATC+TGG + chr7.1:14827839-14827858 None:intergenic 50.0%
CGTGATGATCGAAGACAAGG+AGG - chr7.1:14827565-14827584 MS.gene017946:intron 50.0%
CTCTTTGCTCTGATGCTGCT+CGG + chr7.1:14827851-14827870 None:intergenic 50.0%
GATGGGGTGAATGACAGTGA+TGG - chr7.1:14827418-14827437 MS.gene017946:CDS 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG - chr7.1:14827886-14827905 MS.gene017946:intron 50.0%
ACCCTTTCGGCAAGGCTTCT+AGG + chr7.1:14827890-14827909 None:intergenic 55.0%
AGACAGAGTGGTTCCCATGC+TGG - chr7.1:14826584-14826603 MS.gene017946:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 14826455 14828482 14826455 ID=MS.gene017946
chr7.1 mRNA 14826455 14828482 14826455 ID=MS.gene017946.t1;Parent=MS.gene017946
chr7.1 exon 14828293 14828482 14828293 ID=MS.gene017946.t1.exon1;Parent=MS.gene017946.t1
chr7.1 CDS 14828293 14828482 14828293 ID=cds.MS.gene017946.t1;Parent=MS.gene017946.t1
chr7.1 exon 14827292 14827551 14827292 ID=MS.gene017946.t1.exon2;Parent=MS.gene017946.t1
chr7.1 CDS 14827292 14827551 14827292 ID=cds.MS.gene017946.t1;Parent=MS.gene017946.t1
chr7.1 exon 14826964 14827200 14826964 ID=MS.gene017946.t1.exon3;Parent=MS.gene017946.t1
chr7.1 CDS 14826964 14827200 14826964 ID=cds.MS.gene017946.t1;Parent=MS.gene017946.t1
chr7.1 exon 14826799 14826867 14826799 ID=MS.gene017946.t1.exon4;Parent=MS.gene017946.t1
chr7.1 CDS 14826799 14826867 14826799 ID=cds.MS.gene017946.t1;Parent=MS.gene017946.t1
chr7.1 exon 14826455 14826502 14826455 ID=MS.gene017946.t1.exon5;Parent=MS.gene017946.t1
chr7.1 CDS 14826455 14826502 14826455 ID=cds.MS.gene017946.t1;Parent=MS.gene017946.t1
Gene Sequence

>MS.gene017946

ATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGTATTGTAGTACTTTTTCTATTTCTGTTTTTTGTCTTGATTTTGACTTTTTTGTTCAATGATTTAATTTCTTCTAGACAACTTTTTAGGCTAGTTCGATGTTTCTTTTGGGGGCTGTCCCTACGCTTTCTTAAAATAGAATTTGAAATTGTAATTAATATTTTGTGCTCAAGAAATAGAGTGCAATTTTTTGTGAATATAGTGGTCAGCTAAGGTTTGGTCCAACACAAGATACAATTTTAGTCATCGTAGAGAGACATTTGCATTTAGTGTTAAATGACTTTTGGAAATTAAAACATAACTTTTTTTAGGACAGACATGTTGCTAAATCTAAAAAAAAAATGGGAGCTAAATCAATTTTTTTTTATCATTAAGAATAGAATTCGGAATTTTGAGTTTACAACACTCACACATACTATGCACCAACGAATAGCGTTAGACTTAGATAGATTGTATTTCCTTGTAGTTACATAAGTTATTTATGTGTGTAACAAAAAAAAAAGTTATTTATGTACAAGGGAGGCATTTATGTCTAATTATTATTTTTTTAACAATTTCTGTCTAATTTATGGTTGTTTATAATTTGCTGATTCAAATCATGAGATAGTAGGACTTAATTCCACAAATGCTAAACAAGCATAGGTGGATTCATTCTCTGAAGATTTATTATACCTAGCAATATGAATCACATTAGATTTTCACATTTTTAAACATTATTTATGCATATAAATGTAAATTGCAGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGGTATATAACAGGTTAACTTTTTTTTTTTTATTAGGCCTAAATGCAATTTTGTCTCCTAATTTTGCTGATTCGCAATTTTGATGTTACTCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCACTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGGTCAGAATCATCATCACACAGTTGTTGATTTTTTCCCCCTTTTAAGACAATTATGTTTTTGTGTTTAGAAAGTTAAACATTGTTTAATTTTGGCAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGGTACTTAATTAAATTTATAAGTTAGTTAATTTTATTCCCCTATTCATTTCCATGCAGTTAATCATGATTAGTTCATGCCTGCACTAATATATATTTTAAGGCTAATGTTAATTTGTGCCCTCAAGGCACATGTTAAGATACTCATTATAGAAATACACATATCAAAAGGCGTGCATTCAACTTCTTAAAAGTTGTTATATTGTGTTTTCCAATGCAAAATTGCTCTATTTAGGTTGCTTAACATGTGCCCTAAGGGCACAAGTTAACATGACTCATATTTTAATTACTTTATGCAGACTATGAGTGCAAAAAGAGCTAAGTGCAGATGCAGAAACAAGAAATGA
Protein sequence

>MS.gene017946.t1

MDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHHLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNKK