AlfalfaGEDB | MS.gene017958

M. sativa cultivar XinJiangDaYe / MS.gene017958

KEGG: K14431
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24 PF14144.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017958.t1	XP_003625219.2	96.6	417	11	1	1	414	48	464	1.70E-215	758.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017958.t1	Q52MZ2	67.9	427	109	7	12	414	84	506	6.6e-152	538.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017958.t1	G7KUH8	96.6	417	11	1	1	414	48	464	1.2e-215	758.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene017958.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017958.t1	MTR_7g092750	97.602	417	7	1	1	414	48	464	0.0	842
MS.gene017958.t1	MTR_7g092750	91.367	417	7	2	1	414	48	438	0.0	776
MS.gene017958.t1	MTR_7g092750	97.245	363	7	1	55	414	1	363	0.0	733
MS.gene017958.t1	MTR_0126s0080	72.944	377	79	6	13	366	83	459	0.0	549
MS.gene017958.t1	MTR_7g089800	59.177	316	116	5	102	413	117	423	1.03e-127	375
MS.gene017958.t1	MTR_8g040120	52.073	386	159	8	35	412	98	465	1.31e-127	376
MS.gene017958.t1	MTR_7g089800	60.458	306	108	5	112	413	156	452	3.08e-127	375
MS.gene017958.t1	MTR_2g086420	56.271	295	115	2	119	413	188	468	3.32e-116	348
MS.gene017958.t1	MTR_2g086420	56.271	295	115	2	119	413	189	469	4.21e-116	348
MS.gene017958.t1	MTR_4g053250	53.420	307	122	3	107	413	176	461	9.25e-110	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017958.t1	AT5G06839	59.502	442	136	11	12	414	22	459	4.85e-175	497
MS.gene017958.t1	AT5G06839	59.857	421	125	9	12	414	22	416	2.56e-172	488
MS.gene017958.t1	AT5G06839	59.479	422	126	9	12	414	22	417	2.28e-171	486
MS.gene017958.t1	AT1G08320	54.310	348	131	8	66	413	10	329	3.14e-125	366
MS.gene017958.t1	AT1G08320	54.310	348	131	8	66	413	10	329	3.14e-125	366
MS.gene017958.t1	AT1G08320	45.861	447	167	11	14	413	35	453	2.03e-123	366
MS.gene017958.t1	AT1G08320	45.861	447	167	11	14	413	35	453	2.03e-123	366
MS.gene017958.t1	AT1G08320	45.861	447	167	11	14	413	35	453	2.03e-123	366
MS.gene017958.t1	AT5G06950	53.746	307	133	3	109	413	31	330	9.57e-114	336
MS.gene017958.t1	AT5G06950	53.746	307	133	3	109	413	31	330	9.57e-114	336

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Find 94 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAACATCAGGAATG+AGG	0.564641	7.1:+14686687	MS.gene017958:CDS
AAAGAGTTAACCTTAGGATC+TGG	0.468362	7.1:-14687250	None:intergenic
AACATTCTAAGCTCATTCTC+AGG	0.491670	7.1:-14688018	None:intergenic
AACTCAATGCTCGCATACGA+TGG	0.565611	7.1:-14691756	None:intergenic
AAGAGTGGAGAGTTTGTTCA+TGG	0.395292	7.1:-14689235	None:intergenic
AATGTTTGTGGACAAATTCT+TGG	0.284617	7.1:+14688035	MS.gene017958:CDS
ACATGAAGCAACGTTCAATT+GGG	0.406516	7.1:-14688140	None:intergenic
ACCTAAAACACCAGATCCTA+AGG	0.513193	7.1:+14687240	MS.gene017958:CDS
ACCTTAGAATTGGACGATGA+TGG	0.485367	7.1:-14686755	None:intergenic
ACGATGGAAGTACTCAGCCA+TGG	0.660105	7.1:-14691740	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCAACATCAGGAATG+AGG	+	chr7.1:14686687-14686706	MS.gene017958:CDS	30.0%
AACTTAAAGAGATAGATGGA+TGG	-	chr7.1:14689691-14689710	None:intergenic	30.0%
AATAAGGTTTCCTAGCTATA+AGG	+	chr7.1:14689875-14689894	MS.gene017958:intron	30.0%
AATGTTTGTGGACAAATTCT+TGG	+	chr7.1:14688035-14688054	MS.gene017958:CDS	30.0%
AATTCTTGAAATGGTAACCT+AGG	+	chr7.1:14690557-14690576	MS.gene017958:intron	30.0%
ACAATAAATCATGACATGTC+CGG	-	chr7.1:14687742-14687761	None:intergenic	30.0%
ACAATGTATATGTTTGTGTG+TGG	-	chr7.1:14691335-14691354	None:intergenic	30.0%
ACTACAATACAAAAGAGAGA+TGG	-	chr7.1:14688741-14688760	None:intergenic	30.0%
ATAAACTTTGTATTGTCGGT+GGG	+	chr7.1:14688452-14688471	MS.gene017958:intron	30.0%
ATACTATAAGAGGGAAAGTA+TGG	-	chr7.1:14688826-14688845	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	14685792	14691810	14685792	ID=MS.gene017958
chr7.1	mRNA	14685792	14691810	14685792	ID=MS.gene017958.t1;Parent=MS.gene017958
chr7.1	exon	14685792	14685835	14685792	ID=MS.gene017958.t1.exon1;Parent=MS.gene017958.t1
chr7.1	CDS	14685792	14685835	14685792	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14685964	14686064	14685964	ID=MS.gene017958.t1.exon2;Parent=MS.gene017958.t1
chr7.1	CDS	14685964	14686064	14685964	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14686687	14686775	14686687	ID=MS.gene017958.t1.exon3;Parent=MS.gene017958.t1
chr7.1	CDS	14686687	14686775	14686687	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14686881	14686946	14686881	ID=MS.gene017958.t1.exon4;Parent=MS.gene017958.t1
chr7.1	CDS	14686881	14686946	14686881	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14687190	14687261	14687190	ID=MS.gene017958.t1.exon5;Parent=MS.gene017958.t1
chr7.1	CDS	14687190	14687261	14687190	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14687433	14687492	14687433	ID=MS.gene017958.t1.exon6;Parent=MS.gene017958.t1
chr7.1	CDS	14687433	14687492	14687433	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14687614	14687691	14687614	ID=MS.gene017958.t1.exon7;Parent=MS.gene017958.t1
chr7.1	CDS	14687614	14687691	14687614	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14687776	14687848	14687776	ID=MS.gene017958.t1.exon8;Parent=MS.gene017958.t1
chr7.1	CDS	14687776	14687848	14687776	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14687926	14688197	14687926	ID=MS.gene017958.t1.exon9;Parent=MS.gene017958.t1
chr7.1	CDS	14687926	14688197	14687926	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14689036	14689275	14689036	ID=MS.gene017958.t1.exon10;Parent=MS.gene017958.t1
chr7.1	CDS	14689036	14689275	14689036	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1
chr7.1	exon	14691661	14691810	14691661	ID=MS.gene017958.t1.exon11;Parent=MS.gene017958.t1
chr7.1	CDS	14691661	14691810	14691661	ID=cds.MS.gene017958.t1;Parent=MS.gene017958.t1

Gene Sequence

>MS.gene017958

ATGATGCAATCTTCTTCATCACCCTCTGTCCTTGGAAACTACATGTGAGTTCTCAATTATGTATATGTGTATATATATCGAGATGAAGTGATGAACAATTAACTGTGTCTTACGTTAAAAAAAATTGGTTTATTTTGTTATTATAATTTTTTTGTTTTGTCTATGTCAGCAGAAATAAAGATTCGGGAGCTTATGATTTGGGTGAATTGGATCAAGCCCTTTTTCTCTATCTTAATGGACAAACTGACCCATCCAGTGTTCAAGACCAAAAACGTGAGTTTTTTTTTTGTCACATGAAAATCGAAATGAAAGAAAAAAACACTTTTTTTTTCCCTTCCAAATCCCAATAACGTTTTGCTTGAAATTCAAAAAGATGGACTCTTTTCCTTTCACTTTTGGTTTGTTATAGAGAATCTCTTTGTTTCACACCAATAGCATGTTCAGGAGAATCATATCTGCTGCAGCGTACTGCCTTTGACCAGATCCTTTCTGCAGAAAAGCAAAACAAACCAAAAGTGTGGAAAAAATGGAATACACATTTTTATTTTTATTTTTATTTTCAATTTCTTTCTTTTTTCTAAAAAAGGGAAATTTATTCATTTCTCTCTCTATATTTTTCTATATATTTACTTGTATTTTTCTATTAATACTATTCTCAAAATATTTACAAGAGAAGAGAGGTAGAAATGCATCACACTCACTCTTCTTGTAATTCTCATTTGTGAATTCTCTCGTAATCATTTTGTCCTTTGAAAAATAGCCTCTTTATTCATTCTATCATTTCTCTCTTGATTAGTATATTTATGTTATACTTCTACAAAAAAATGTATATTTATGTTATACACACATAACTATTTAATGTTGCTGAATTTGGTACATGTTTGCGTCTCCACAGAAAATTCAACATCAGGAATGAGGCCACCAACTCTCAACATTTTTCCTTCTCAGCCTATGCATGTAGAGCCATCATCGTCCAATTCTAAGGTGTAATTACTCATTAATAATTATTTCACGATGAATTGTGTTACACACTACTCTCTTATTTTGTTACACTTCATATTAATGGTTTTTTAATTAATTATTTTATAGGCTAGCATGGAGTTAGTTTCTCCGCAAACAAGTGGATCCAAGAGAGGATCAGAGCCACCCAAAGCTGTTAAGGCACGTACAAAAATCATTATATTAAACCAATATGTTAATTAATAGTTTATGATTAAAATGAAAAGAAACAATTATAAGAGTTTGGTTCATCAAAAAAATAATAAGAGTTTGGTAGCATCTTTGAAGCATATGAATTTCTGAGCTAGTTAATTAAGCTACTCAATTATTGCTAGATATTATTATTATTTTCTTTATCCTAATTAATCACCTACCTATGCCTTTATTATACTATAGCAGCGAGAGAAAAATCATGGCAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGGTTAACTCTTTAATCTTTTTTTTTTTGTGTTAAAAAACTATAATCTTTTTATTTTCCCCATTTCATATCCACATTTTATCAATCTTGTTACTTTTTTTTATTCTTTTTGGTGACAATCAGTGCTAACAATATTTTTTTTAATTTTAAATTAAAATGTTCAACTACTTACAGATACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGGAAAAAGGTAAATGGATTCAAATGAAGATCATTAATTAAATTCCATATTTGTGTTGTGTTTTTTACATTTTTTGTCAATGGTAACTTATGAGCTATATATGTATAATTTTATTTGTACTCTTTTTCAGGCATATATTCAGCAGCTTGAGTCAAGCAGAATTAAACTTAATCAGATGGAACAGGAGCTACATCATGCTAGAAATCAAGTAAGAAAACAAGAAAAATATCTTCATGGTAACCTAAAATGCAATAACCGGACATGTCATGATTTATTGTTATTTCCATTTTAGGGCATGTTCTTTGGTGGAGGTGCAATGTTGGAAGGAGAACAAGGCCTTCCTTCTATGAATACCATTAGCTCAGGTGTGATCTCTTTTCCCTTATAATGCATGTTTAATCAATTTAACCTCTTATATAAATATTTGAAATGAATATTTCAGAGGCTGCAATGTTCGACGTGGAATATGGGAGGTGGCTTGAGGAGCACCACCGTTTAGTATGTGAACTAAGAGCTGCAGTTCATGAGCACATTCCTGAGAATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCTCAATATGATCAAGTAGCTCATCTAAAGAGCTTAGTTGCAAAAGCAGATATATTTCATCTTGTTTCTGGCATGTGGGTTACCCCAATTGAACGTTGCTTCATGTGGATTGGTGGATTTAAGCCTTCTGAACTCATTAAGGTATAGCATCATACTATTCTAAGTAACCAAAGGTTCATTTCATTCATGCCATGACTTAACATTATTTAACAACTACGTACATGACAAAAAACTAGTTATTGAATTTAGCATATGCTTTTTTTTTTTTTTTTTTTTGCAATATTATAAAGTTGAACTTTGGTGAATTTTATGATAATTTTTATGCGGAGAATAGGGAGGGAAATGGTGTAACGTTATAGTCATTCAAAAGGAGAAGTTGATGATGTTATAAATTCATAAACTTTGTATTGTCGGTGGGGCTATATACCAAAGAAATAAAAAAGAAGAGCTCACTATGAATTTAATGTCATCAATGAAATGACGAAAGAAGTATGAAGATTTTCCATATTGTACGGTAGAGTTAGACTTCATGAAAGCCACACCTTATAACATTGATTAAGAAATTTAGTAAAGAAAAAGAAAGTAGCACAACACAAGTCTTTTTCTCTCATTTTTCTTCTTTTCAAGTTTCATGACCTTATTGTTAATGAAATTATGGGAATAGAGTCTTTGTTTCCATACCCATCTCTCTTTTGTATTGTAGTTAATCGATAAACTTGAACAACCTCTCTTAACTCACAAAATATGGAATTGTATGATTTGACAACCATACTTTCCCTCTTATAGTATTAGTATTGATATACAAATAACTTTTATGATATGCTCTTTATGTAATTTGAAAAATATTATATTTAGTTTAGTTGTTGAATTCAATGTTAGGAGAGTAATAATTGATTCTAATTCTAATAAATAAAGGTATAATTTGTAGTATTATGTCCAAATGTGATTTCTTATGTTTTGATTTTTATGTGTATTTTAGATCATTGTGAGTCAAATTGAACCACTGACCGAGCAACAAATAATGGGCATATATGGATTGCAACAATCTACACAACAGGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTCAATCAAAATCTTTCTGAAACCATAACATCAGATTCATTGAGCTATCCTCCCAATATGACCAACTACATGGACCAAATGGCAAGGGCCATGAACAAACTCTCCACTCTTGAAAGTTTCGTGAGAGAGGTACATTACCTTACTTTGACTATTTAACATGCTTCAATTTTTTTAAATAATAGTATTTGCGAATAGGTGACTTTTATTAAGTAAGATTAAAAAGAGTATTAAATAATAGTATTCCTTTTGTCATCTAAAAAAAAATAATATAATCTGAAAACGATGTTATATCTATTCATATAGATATTGTTAATCATGGACGTTGAATTTGGTTTATATGTGTATATATTAGTGATTTTTAGGATGGAATTTTGCGACATGCTATCTATATCATGGTTGATTAGTTTTGTGGTCCCTCTATAAGGGCCATGACTTGACAAAGTTTTCATAACTGATTTCGTGGGGGTACTACTGGGTAGGAAGAAGAATCTGTTGTCCTTGGGTAGGGAAACCTACCACACAACCCCATGAACTACTCCTTCCATCCATCTATCTCTTTAAGTTAGTTACATGGAATCTACAAACAAATACATTCAAAATATTTGAATCTCATATTTAGATGTTTATGTATTAATCAAAATCACAAATATGTATATATATTTTTTAAAGTGATTGGATAGAGAGTTAGTTAGTACACATAGGCGTAAAAAGCATAGCAAAGGTACCATAATAAGGTTTCCTAGCTATAAGGTTATGAGGATGTTGTTATTAGAATGAACATTTTATTCACATTGATGAATTTCTAAGGTTGCTAGTGTGTATATTATTGATAGTATACACGTGAAAGTTAATATTAGTGGTCCCACTGATACAATCCTAATTAAAAGATACTATCCCTCTAGCCCCATATCTATGTGATGTCATGGTCATAACCGTTTGACTTGAAGACAGCACTTATAGACCCTTCCCCATAACATCCTTTTTGAATTTTGACTAAAAGTACAAACGGACGAATAATATTGCTCATGTCTAATATGATTTTTGGTTGAGTGAGTGAGATCATAATGCAAGATTTTTGAATCAAATTGGCCATATCATTTTGTTTTCTTCTAGGTATCAAAATATCGACTGATTTTGGAATTTAATTAGTTGAATTGAATTAAGTTGAAAGCAATGGTAAAACGATCTAATTTTCTTTGTGAAATTTATGGTAGTTAATATGCACCAGCTACCACAATATAGTGTGATTTTTTTTATATGTTGTTCTTTGAAAAATTATGAGCAACTCTTGACAAAAAAAAAAGAATTATGAGCAAATTATCTAACACATTTATAAACATTTAAGATATTTTTTACCCACAAGCAAATATACAAAATTTTGTTTGTTAACTATGGGTAAATTTCATTAACAATTCTTGAAATGGTAACCTAGGCCTCACCAATATCATATGTGTTAATTTGTTGTTTTCATCTCACCAAAAGTTGTTCACCGACTTCTATCAATGTCTATATTAGTAGCGGTTTTATTATTACAAGTAATCCAATTATACATCTTTGAATCTATTGTAAGAAACCGATCGGAACAATGGGAAACAAAAGCTAGAGGAATATTAATTAGGTAGACCATATATACTAATGATAATGATTATGAATATGAACATTAGTATAAAGTTGATCTATAAGCTCAGCCAGTCATAGTTTGACCAATTTGTAGTATTTGTTCTTGTTGGACTTTTAGTCACACTATATATTGAACAATAATAGTCACACACACTCTTTGAAAATAATACATATATGTTGAACAATAATAGTCTGAATGTTCTTTCAAAAAAAAAAAATAATAGTCTGAATGTCATGTAGTCTATATCTATATATTAATTAAAAATAAGGTCTCTAATTTACCCCTTACGTACTTTGAAAAATCGTTTACATACTCTACTGCCTTATATGTTGAAGTGCTAGTGTTATAGATAACCAAAATTTCGGTTAACGTTCCAAATTTGACTAAGAAAACCTATATCATGTTCCTATAACTATTTATTATTCTTGTTTTCAAAGGTAGAAAGGGAAAAGAATACCTTGTTACAGTTTCGTCTCCAACCTCTTTTTGTCTGTGTCTTTGCAATTTCATTATTTATATTCTCAGTTGAATCTACAAGCAAAAGGTGGAATTTTCAACACACCTCCACACACAAACATATACATTGTCAAATAACTAAATATTACTATATAAATTTATATTATGTGTACTTATCCTCTAGGGTTTCCATCCCTGATCAAGTCAAATTGTGGTTGGATTAATCTAACAATTGAGATTATCGATCACTGTAGTGATAGGAAGGAATTGTGCAGCACTAGAGAATCTAGCCGCAAAATATAGAGTTGACTCAAATTTTCACTAGCATTTATTTATTTTTTTAGACGATTCAACGGCCAGATAATACTGTTCATACTAATATTTGTCGTTTAAAAAAAGAAAATAACCGGTAATTGTGATTTGAATTGAACTTACAGGCAGATAATCTACGACACCAAACCATTCATCGTCTGAATCAGATCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTTGCCATGGCTGAGTACTTCCATCGTATGCGAGCATTGAGTTCTCTGTGGGTGGCACGCCCTCGTCAAGAATAG

Protein sequence

>MS.gene017958.t1

MMQSSSSPSVLGNYINKDSGAYDLGELDQALFLYLNGQTDPSSVQDQKQNSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELVSPQTSGSKRGSEPPKAREKNHGKGPTSSSEHEGPKTPDPKILRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELHHARNQGMFFGGGAMLEGEQGLPSMNTISSEAAMFDVEYGRWLEEHHRLVCELRAAVHEHIPENELRMFVDKFLAQYDQVAHLKSLVAKADIFHLVSGMWVTPIERCFMWIGGFKPSELIKIIVSQIEPLTEQQIMGIYGLQQSTQQGEDALSQGLEALNQNLSETITSDSLSYPPNMTNYMDQMARAMNKLSTLESFVREADNLRHQTIHRLNQILTTRQAARCFLAMAEYFHRMRALSSLWVARPRQE