Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017972.t1 | XP_024625249.1 | 96 | 575 | 19 | 1 | 1 | 575 | 1 | 571 | 0.00E+00 | 1085.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017972.t1 | Q9M219 | 25.9 | 557 | 376 | 11 | 26 | 565 | 10 | 546 | 8.5e-49 | 196.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017972.t1 | G7KVB8 | 96.0 | 575 | 19 | 1 | 1 | 575 | 1 | 571 | 0.0e+00 | 1085.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene017972.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017972.t1 | MTR_7g093000 | 96.000 | 575 | 19 | 1 | 1 | 575 | 1 | 571 | 0.0 | 1125 |
| MS.gene017972.t1 | MTR_5g084810 | 35.294 | 561 | 348 | 5 | 13 | 567 | 28 | 579 | 4.64e-110 | 341 |
| MS.gene017972.t1 | MTR_8g005155 | 24.865 | 555 | 373 | 13 | 33 | 565 | 22 | 554 | 6.13e-45 | 167 |
| MS.gene017972.t1 | MTR_7g080620 | 24.867 | 563 | 380 | 14 | 27 | 565 | 31 | 574 | 2.84e-43 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017972.t1 | AT5G06811 | 45.455 | 561 | 287 | 8 | 20 | 568 | 23 | 576 | 7.13e-160 | 469 |
| MS.gene017972.t1 | AT5G06810 | 40.877 | 570 | 304 | 8 | 20 | 568 | 23 | 580 | 3.40e-146 | 434 |
| MS.gene017972.t1 | AT4G19650 | 38.977 | 567 | 329 | 7 | 3 | 568 | 39 | 589 | 5.11e-135 | 406 |
| MS.gene017972.t1 | AT4G19650 | 40.283 | 494 | 283 | 5 | 76 | 568 | 90 | 572 | 1.48e-123 | 376 |
| MS.gene017972.t1 | AT5G45113 | 34.118 | 425 | 261 | 5 | 149 | 568 | 1 | 411 | 7.27e-80 | 257 |
| MS.gene017972.t1 | AT3G60400 | 25.853 | 557 | 376 | 11 | 26 | 565 | 10 | 546 | 2.19e-55 | 196 |
Find 110 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGAGGTTTCTTGTAAT+TGG | 0.139207 | 7.1:+14564543 | MS.gene017972:CDS |
| AGAAATGGATTGGGCGTTTA+AGG | 0.166970 | 7.1:+14565096 | MS.gene017972:CDS |
| CTTAACTCTTGGAGATTTAT+AGG | 0.169215 | 7.1:-14565323 | None:intergenic |
| AAGGGTTCAAATTCGTTAAT+AGG | 0.178407 | 7.1:-14564137 | None:intergenic |
| TGCAGCTTGGGCTTCTTTAA+TGG | 0.216279 | 7.1:-14563952 | None:intergenic |
| TGCTGTAAGTCCAGGGATTC+TGG | 0.230492 | 7.1:+14564412 | MS.gene017972:CDS |
| ATCCGTCTGGCCTTCAAGTT+TGG | 0.231486 | 7.1:+14565464 | MS.gene017972:CDS |
| CAAACCCAAACTCTCGAAAA+AGG | 0.236170 | 7.1:-14564156 | None:intergenic |
| GGATGAGGTTTCTTGTAATT+GGG | 0.245427 | 7.1:+14564544 | MS.gene017972:CDS |
| TGGTGTTCCTCGATCCAAAA+TGG | 0.255150 | 7.1:+14564274 | MS.gene017972:CDS |
| TAAATTTGAAAATGGGGTTT+TGG | 0.276379 | 7.1:+14564328 | MS.gene017972:CDS |
| GATTAAGGCTTATGAAGATT+TGG | 0.277999 | 7.1:+14564358 | MS.gene017972:CDS |
| GAAATGAAGAACTGGGTTCT+TGG | 0.309862 | 7.1:+14564968 | MS.gene017972:CDS |
| ATTAAGGCTTATGAAGATTT+GGG | 0.321396 | 7.1:+14564359 | MS.gene017972:CDS |
| AGGTAAGGGAGCTGAGCTTC+AGG | 0.325160 | 7.1:+14565126 | MS.gene017972:CDS |
| TTAAGCCTATGGTTGGCTTA+AGG | 0.351833 | 7.1:+14564999 | MS.gene017972:CDS |
| ATCCTCTTGAAATGAAGAAC+TGG | 0.352452 | 7.1:+14564960 | MS.gene017972:CDS |
| TTAGGTTGTCAATGTATAAC+TGG | 0.352925 | 7.1:+14565347 | MS.gene017972:CDS |
| TAAGCCTATGGTTGGCTTAA+GGG | 0.353016 | 7.1:+14565000 | MS.gene017972:CDS |
| GTTTAGAGAGGGTTTAAGAT+TGG | 0.359706 | 7.1:-14563859 | None:intergenic |
| TCCGTCTGGCCTTCAAGTTT+GGG | 0.365084 | 7.1:+14565465 | MS.gene017972:CDS |
| TACCACACTCTGTGTAACTA+TGG | 0.367026 | 7.1:+14564254 | MS.gene017972:CDS |
| ATTATCTGTGCATGCGATAA+TGG | 0.370221 | 7.1:-14565413 | None:intergenic |
| AGGGTTCAAATTCGTTAATA+GGG | 0.372587 | 7.1:-14564136 | None:intergenic |
| GACCATGGGGCTGTAAATCC+CGG | 0.381462 | 7.1:+14565376 | MS.gene017972:CDS |
| GCAACTCTTCCCAAACTTGA+AGG | 0.394707 | 7.1:-14565474 | None:intergenic |
| GGCAAGACACTCTCGATGAT+TGG | 0.410057 | 7.1:+14564674 | MS.gene017972:CDS |
| ATATTCTAACAATGCAGCTT+GGG | 0.419910 | 7.1:-14563964 | None:intergenic |
| ATTGAGTATCTTGTAAAGAA+AGG | 0.421238 | 7.1:+14565259 | MS.gene017972:CDS |
| GGTGTTCCTCGATCCAAAAT+GGG | 0.437198 | 7.1:+14564275 | MS.gene017972:CDS |
| TTCTTAATCAGAACACAGAT+AGG | 0.440115 | 7.1:+14565224 | MS.gene017972:CDS |
| CAGTCTCACACAGTACTTGC+GGG | 0.440618 | 7.1:+14564854 | MS.gene017972:CDS |
| TTCGCTGTGTTGTAAAATCT+AGG | 0.443690 | 7.1:-14563882 | None:intergenic |
| TATGGTTGGCTTAAGGGATC+TGG | 0.446200 | 7.1:+14565006 | MS.gene017972:CDS |
| GATGAGGTTTCTTGTAATTG+GGG | 0.448648 | 7.1:+14564545 | MS.gene017972:CDS |
| TGTGGAAAACACGAAAGAAA+TGG | 0.448745 | 7.1:+14565081 | MS.gene017972:CDS |
| CTTGTTGCGCTTAGGTTATG+TGG | 0.449939 | 7.1:+14565063 | MS.gene017972:CDS |
| TTGTGCTTGCTTTCGAATGT+TGG | 0.450865 | 7.1:+14564584 | MS.gene017972:CDS |
| GTTTAAGGCGTTCAGAGGTA+AGG | 0.457273 | 7.1:+14565111 | MS.gene017972:CDS |
| GAGATGGAAGCTAAAGAGAT+TGG | 0.461660 | 7.1:+14564821 | MS.gene017972:CDS |
| TGTTAATGTTGAATTTGTTA+AGG | 0.462584 | 7.1:+14564442 | MS.gene017972:CDS |
| CCGCAAGTACTGTGTGAGAC+TGG | 0.465962 | 7.1:-14564853 | None:intergenic |
| GTTGCTTGAATGTAGGTAAG+AGG | 0.469865 | 7.1:+14564912 | MS.gene017972:CDS |
| TCGCTGTGTTGTAAAATCTA+GGG | 0.474371 | 7.1:-14563881 | None:intergenic |
| CGAGAAACAAGAGGGCAATC+TGG | 0.474907 | 7.1:-14564727 | None:intergenic |
| AAGACAACTAAGAGTTTGCT+TGG | 0.477982 | 7.1:+14564890 | MS.gene017972:CDS |
| TATGTAAAACGCCATCCGTC+TGG | 0.479613 | 7.1:+14565451 | MS.gene017972:CDS |
| GACAACCTAAGCTTAACTCT+TGG | 0.480332 | 7.1:-14565334 | None:intergenic |
| AATCTCCAAGAGTTAAGCTT+AGG | 0.484339 | 7.1:+14565329 | MS.gene017972:CDS |
| GTAAAATCTAGGGTTTAGAG+AGG | 0.484384 | 7.1:-14563871 | None:intergenic |
| AAAACACGAAAGAAATGGAT+TGG | 0.486098 | 7.1:+14565086 | MS.gene017972:CDS |
| GATATTCTAACAATGCAGCT+TGG | 0.491273 | 7.1:-14563965 | None:intergenic |
| TTGCTTGGTTGCTTGAATGT+AGG | 0.497867 | 7.1:+14564905 | MS.gene017972:CDS |
| ACAGAGTTCTTGTTGCGCTT+AGG | 0.497883 | 7.1:+14565055 | MS.gene017972:CDS |
| TTGATAGTGGTTGGATTCAG+TGG | 0.501005 | 7.1:+14564513 | MS.gene017972:CDS |
| TGGAATAAGAGTTAAGCCTA+TGG | 0.513478 | 7.1:+14564988 | MS.gene017972:CDS |
| ACCCAGTTCTTCATTTCAAG+AGG | 0.514113 | 7.1:-14564962 | None:intergenic |
| TTGAAGAATATTGTTGCAAA+GGG | 0.516097 | 7.1:+14564476 | MS.gene017972:CDS |
| GATTTATAGGAAAGATATGA+TGG | 0.516794 | 7.1:-14565310 | None:intergenic |
| GCTTCTGACTGAAATTGAGA+TGG | 0.523682 | 7.1:+14564805 | MS.gene017972:CDS |
| AATGGTGCTCAAAGCAAGCC+CGG | 0.524340 | 7.1:-14565395 | None:intergenic |
| ATTGTTGCAAAGGGTGGTGA+TGG | 0.524388 | 7.1:+14564485 | MS.gene017972:CDS |
| ATAACTGGCTCGTTGACCAT+GGG | 0.527841 | 7.1:+14565362 | MS.gene017972:CDS |
| AGAAATCGATTAACACGAAA+CGG | 0.527963 | 7.1:+14564087 | MS.gene017972:CDS |
| TGGCTTAAGGGATCTGGAAG+AGG | 0.530600 | 7.1:+14565012 | MS.gene017972:CDS |
| TGGTAATTCGCCATCAAAAG+AGG | 0.533148 | 7.1:-14564236 | None:intergenic |
| AAACACGAAAGAAATGGATT+GGG | 0.533185 | 7.1:+14565087 | MS.gene017972:CDS |
| GAAGAGGAGAAATCGAGGGT+GGG | 0.535364 | 7.1:+14565028 | MS.gene017972:CDS |
| ACATCACCAACCAGAATCCC+TGG | 0.536336 | 7.1:-14564422 | None:intergenic |
| ACTGCAAGCTTCTTGTGGAA+TGG | 0.539414 | 7.1:-14563989 | None:intergenic |
| CGAGTTTCCACAGATTTCGA+TGG | 0.543091 | 7.1:+14564748 | MS.gene017972:CDS |
| TATAACTGGCTCGTTGACCA+TGG | 0.544178 | 7.1:+14565361 | MS.gene017972:CDS |
| ATAAGAGTTAAGCCTATGGT+TGG | 0.547914 | 7.1:+14564992 | MS.gene017972:CDS |
| AGCAAAGATTCATATTCAGA+AGG | 0.550210 | 7.1:-14564182 | None:intergenic |
| AGATCCCTTAAGCCAACCAT+AGG | 0.552682 | 7.1:-14565004 | None:intergenic |
| AAGAATATTGTTGCAAAGGG+TGG | 0.552691 | 7.1:+14564479 | MS.gene017972:CDS |
| CAGTTGGCTGAGATTATTCG+AGG | 0.554663 | 7.1:+14564620 | MS.gene017972:CDS |
| GCGTCTATGTAGCATACTGC+AGG | 0.554692 | 7.1:+14564934 | MS.gene017972:CDS |
| AAGAGGAGAAATCGAGGGTG+GGG | 0.556838 | 7.1:+14565029 | MS.gene017972:CDS |
| ACCATGGGGCTGTAAATCCC+GGG | 0.564629 | 7.1:+14565377 | MS.gene017972:CDS |
| CGTTAATAGGGTTGTAACGA+AGG | 0.566099 | 7.1:-14564124 | None:intergenic |
| GTTGAAGAATATTGTTGCAA+AGG | 0.570077 | 7.1:+14564475 | MS.gene017972:CDS |
| AATGCTGTTGCTGTAAGTCC+AGG | 0.570515 | 7.1:+14564404 | MS.gene017972:CDS |
| CCAGTCTCACACAGTACTTG+CGG | 0.570636 | 7.1:+14564853 | MS.gene017972:CDS |
| TTTAAGGCGTTCAGAGGTAA+GGG | 0.573608 | 7.1:+14565112 | MS.gene017972:CDS |
| GGAAGAGGAGAAATCGAGGG+TGG | 0.579631 | 7.1:+14565027 | MS.gene017972:CDS |
| TCCCAAACTTGAAGGCCAGA+CGG | 0.582508 | 7.1:-14565466 | None:intergenic |
| CTGAAGACACACCCTCAAGT+TGG | 0.586419 | 7.1:-14564783 | None:intergenic |
| ATCTGGAAGAGGAGAAATCG+AGG | 0.593033 | 7.1:+14565023 | MS.gene017972:CDS |
| TCCTCTTGAAATGAAGAACT+GGG | 0.593818 | 7.1:+14564961 | MS.gene017972:CDS |
| TGGGCGTTTAAGGCGTTCAG+AGG | 0.599598 | 7.1:+14565106 | MS.gene017972:CDS |
| AAACTTGAAGGCCAGACGGA+TGG | 0.607382 | 7.1:-14565462 | None:intergenic |
| TCTTAATCAGAACACAGATA+GGG | 0.611252 | 7.1:+14565225 | MS.gene017972:CDS |
| GCCCGGGATTTACAGCCCCA+TGG | 0.616039 | 7.1:-14565378 | None:intergenic |
| TAAAATCTAGGGTTTAGAGA+GGG | 0.617900 | 7.1:-14563870 | None:intergenic |
| CACCATAGTTACACAGAGTG+TGG | 0.622508 | 7.1:-14564256 | None:intergenic |
| GTAAGTCCAGGGATTCTGGT+TGG | 0.632171 | 7.1:+14564416 | MS.gene017972:CDS |
| ATGGTGCTCAAAGCAAGCCC+GGG | 0.635036 | 7.1:-14565394 | None:intergenic |
| GTGTTCTGATTAAGAATCTG+AGG | 0.641643 | 7.1:-14565217 | None:intergenic |
| GTGGAAACTCGAGAAACAAG+AGG | 0.644988 | 7.1:-14564736 | None:intergenic |
| TGGTTTCAGTGAGAAACAGT+TGG | 0.649810 | 7.1:+14564604 | MS.gene017972:CDS |
| TGGAAACTCGAGAAACAAGA+GGG | 0.652528 | 7.1:-14564735 | None:intergenic |
| TAATAGGGTTGTAACGAAGG+TGG | 0.654329 | 7.1:-14564121 | None:intergenic |
| GTGTTCCTCGATCCAAAATG+GGG | 0.658605 | 7.1:+14564276 | MS.gene017972:CDS |
| TCAAAAGAGGATCATCGTTG+AGG | 0.659008 | 7.1:-14564223 | None:intergenic |
| TTGAGGAAAATCAAATCACG+TGG | 0.663073 | 7.1:-14564206 | None:intergenic |
| TAACTGGCTCGTTGACCATG+GGG | 0.675274 | 7.1:+14565363 | MS.gene017972:CDS |
| ATGCTGTTGCTGTAAGTCCA+GGG | 0.682252 | 7.1:+14564405 | MS.gene017972:CDS |
| AACTTGACCATCGAAATCTG+TGG | 0.684694 | 7.1:-14564755 | None:intergenic |
| TCTGGAAGAGGAGAAATCGA+GGG | 0.689277 | 7.1:+14565024 | MS.gene017972:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTAAATTTGAAAAT+GGG | + | chr7.1:14564321-14564340 | MS.gene017972:CDS | 10.0% |
| !!! | AGTTTTTAAATTTGAAAATG+GGG | + | chr7.1:14564322-14564341 | MS.gene017972:CDS | 15.0% |
| !!! | CAAGTTTTTAAATTTGAAAA+TGG | + | chr7.1:14564320-14564339 | MS.gene017972:CDS | 15.0% |
| !!! | TTTTCAAATTTAAAAACTTG+CGG | - | chr7.1:14564320-14564339 | None:intergenic | 15.0% |
| !! | GATTCTTCAAAAATAATACA+AGG | - | chr7.1:14564650-14564669 | None:intergenic | 20.0% |
| !!! | GTTTTGAAACTAATTGAATT+GGG | - | chr7.1:14563911-14563930 | None:intergenic | 20.0% |
| !!! | TGTATTATTTTTGAAGAATC+AGG | + | chr7.1:14564650-14564669 | MS.gene017972:CDS | 20.0% |
| !!! | TGTTAATGTTGAATTTGTTA+AGG | + | chr7.1:14564442-14564461 | MS.gene017972:CDS | 20.0% |
| !!! | TTTGATTTTATTGTTAATGC+TGG | + | chr7.1:14565154-14565173 | MS.gene017972:CDS | 20.0% |
| ! | ATTAAGGCTTATGAAGATTT+GGG | + | chr7.1:14564359-14564378 | MS.gene017972:CDS | 25.0% |
| ! | ATTGAGTATCTTGTAAAGAA+AGG | + | chr7.1:14565259-14565278 | MS.gene017972:CDS | 25.0% |
| ! | GATTTATAGGAAAGATATGA+TGG | - | chr7.1:14565313-14565332 | None:intergenic | 25.0% |
| ! | TTGAAGAATATTGTTGCAAA+GGG | + | chr7.1:14564476-14564495 | MS.gene017972:CDS | 25.0% |
| !! | ATGTTAATCTCAGTTTTCTA+AGG | - | chr7.1:14563809-14563828 | None:intergenic | 25.0% |
| !! | TAAATTTGAAAATGGGGTTT+TGG | + | chr7.1:14564328-14564347 | MS.gene017972:CDS | 25.0% |
| !! | TTTGAAAATTTTCCCCATTT+TGG | - | chr7.1:14564291-14564310 | None:intergenic | 25.0% |
| !!! | AATCGATTTCTCGTTTTTTA+GGG | - | chr7.1:14564078-14564097 | None:intergenic | 25.0% |
| !!! | ATTATTTTTGAAGAATCAGG+AGG | + | chr7.1:14564653-14564672 | MS.gene017972:CDS | 25.0% |
| !!! | ATTGGTTTTTTGGTCAAATT+TGG | + | chr7.1:14564692-14564711 | MS.gene017972:CDS | 25.0% |
| !!! | GGTTTTGAAACTAATTGAAT+TGG | - | chr7.1:14563912-14563931 | None:intergenic | 25.0% |
| !!! | GTTGATTTTGAGAGAATTTT+AGG | - | chr7.1:14563933-14563952 | None:intergenic | 25.0% |
| !!! | TAATCGATTTCTCGTTTTTT+AGG | - | chr7.1:14564079-14564098 | None:intergenic | 25.0% |
| !!! | TTTAAGATTGGTGTGATTTT+TGG | - | chr7.1:14563850-14563869 | None:intergenic | 25.0% |
| AAAACACGAAAGAAATGGAT+TGG | + | chr7.1:14565086-14565105 | MS.gene017972:CDS | 30.0% | |
| AAGGGTTCAAATTCGTTAAT+AGG | - | chr7.1:14564140-14564159 | None:intergenic | 30.0% | |
| AGAAATCGATTAACACGAAA+CGG | + | chr7.1:14564087-14564106 | MS.gene017972:CDS | 30.0% | |
| AGCAAAGATTCATATTCAGA+AGG | - | chr7.1:14564185-14564204 | None:intergenic | 30.0% | |
| AGGGTTCAAATTCGTTAATA+GGG | - | chr7.1:14564139-14564158 | None:intergenic | 30.0% | |
| ATATTCTAACAATGCAGCTT+GGG | - | chr7.1:14563967-14563986 | None:intergenic | 30.0% | |
| CTTAACTCTTGGAGATTTAT+AGG | - | chr7.1:14565326-14565345 | None:intergenic | 30.0% | |
| GATTAAGGCTTATGAAGATT+TGG | + | chr7.1:14564358-14564377 | MS.gene017972:CDS | 30.0% | |
| GTTGAAGAATATTGTTGCAA+AGG | + | chr7.1:14564475-14564494 | MS.gene017972:CDS | 30.0% | |
| TCTTAATCAGAACACAGATA+GGG | + | chr7.1:14565225-14565244 | MS.gene017972:CDS | 30.0% | |
| TTCTTAATCAGAACACAGAT+AGG | + | chr7.1:14565224-14565243 | MS.gene017972:CDS | 30.0% | |
| ! | AAACACGAAAGAAATGGATT+GGG | + | chr7.1:14565087-14565106 | MS.gene017972:CDS | 30.0% |
| ! | TAAAATCTAGGGTTTAGAGA+GGG | - | chr7.1:14563873-14563892 | None:intergenic | 30.0% |
| ! | TTAGGTTGTCAATGTATAAC+TGG | + | chr7.1:14565347-14565366 | MS.gene017972:CDS | 30.0% |
| !! | ACGAGATTTTCAAGGAAAAA+AGG | - | chr7.1:14564047-14564066 | None:intergenic | 30.0% |
| AAACCCAAACTCTCGAAAAA+GGG | - | chr7.1:14564158-14564177 | None:intergenic | 35.0% | |
| AAGAATATTGTTGCAAAGGG+TGG | + | chr7.1:14564479-14564498 | MS.gene017972:CDS | 35.0% | |
| AATCTCCAAGAGTTAAGCTT+AGG | + | chr7.1:14565329-14565348 | MS.gene017972:CDS | 35.0% | |
| ATAAGAGTTAAGCCTATGGT+TGG | + | chr7.1:14564992-14565011 | MS.gene017972:CDS | 35.0% | |
| ATCCTCTTGAAATGAAGAAC+TGG | + | chr7.1:14564960-14564979 | MS.gene017972:CDS | 35.0% | |
| ATTATCTGTGCATGCGATAA+TGG | - | chr7.1:14565416-14565435 | None:intergenic | 35.0% | |
| GATATTCTAACAATGCAGCT+TGG | - | chr7.1:14563968-14563987 | None:intergenic | 35.0% | |
| GATGAGGTTTCTTGTAATTG+GGG | + | chr7.1:14564545-14564564 | MS.gene017972:CDS | 35.0% | |
| GGATGAGGTTTCTTGTAATT+GGG | + | chr7.1:14564544-14564563 | MS.gene017972:CDS | 35.0% | |
| GTGTTCTGATTAAGAATCTG+AGG | - | chr7.1:14565220-14565239 | None:intergenic | 35.0% | |
| TAAAAACTGCAAGCTTCTTG+TGG | - | chr7.1:14563997-14564016 | None:intergenic | 35.0% | |
| TCCTCTTGAAATGAAGAACT+GGG | + | chr7.1:14564961-14564980 | MS.gene017972:CDS | 35.0% | |
| TCGCTGTGTTGTAAAATCTA+GGG | - | chr7.1:14563884-14563903 | None:intergenic | 35.0% | |
| TGGAATAAGAGTTAAGCCTA+TGG | + | chr7.1:14564988-14565007 | MS.gene017972:CDS | 35.0% | |
| TGGATGAGGTTTCTTGTAAT+TGG | + | chr7.1:14564543-14564562 | MS.gene017972:CDS | 35.0% | |
| TGTGGAAAACACGAAAGAAA+TGG | + | chr7.1:14565081-14565100 | MS.gene017972:CDS | 35.0% | |
| TTCGCTGTGTTGTAAAATCT+AGG | - | chr7.1:14563885-14563904 | None:intergenic | 35.0% | |
| TTGAGGAAAATCAAATCACG+TGG | - | chr7.1:14564209-14564228 | None:intergenic | 35.0% | |
| ! | AAGACAACTAAGAGTTTGCT+TGG | + | chr7.1:14564890-14564909 | MS.gene017972:CDS | 35.0% |
| ! | GTAAAATCTAGGGTTTAGAG+AGG | - | chr7.1:14563874-14563893 | None:intergenic | 35.0% |
| ! | GTTTAGAGAGGGTTTAAGAT+TGG | - | chr7.1:14563862-14563881 | None:intergenic | 35.0% |
| ! | TTTTGTGGACGAGATTTTCA+AGG | - | chr7.1:14564055-14564074 | None:intergenic | 35.0% |
| !!! | ACTCTCGATGATTGGTTTTT+TGG | + | chr7.1:14564682-14564701 | MS.gene017972:CDS | 35.0% |
| !!! | ATGGTGATTTTGATAGTGGT+TGG | + | chr7.1:14564504-14564523 | MS.gene017972:CDS | 35.0% |
| !!! | CAAGTTTTTTGCCAACTTGA+GGG | + | chr7.1:14564772-14564791 | MS.gene017972:CDS | 35.0% |
| !!! | GGTTTTGGTTTCGAAGATTA+AGG | + | chr7.1:14564343-14564362 | MS.gene017972:CDS | 35.0% |
| !!! | TCAAGTTTTTTGCCAACTTG+AGG | + | chr7.1:14564771-14564790 | MS.gene017972:CDS | 35.0% |
| !!! | TCTCGTTTTTTAGGGTTTTG+TGG | - | chr7.1:14564070-14564089 | None:intergenic | 35.0% |
| !!! | TTGGATTCAGTGGCATTTTT+TGG | + | chr7.1:14564523-14564542 | MS.gene017972:CDS | 35.0% |
| AACTTGACCATCGAAATCTG+TGG | - | chr7.1:14564758-14564777 | None:intergenic | 40.0% | |
| ACCCAGTTCTTCATTTCAAG+AGG | - | chr7.1:14564965-14564984 | None:intergenic | 40.0% | |
| CAAACCCAAACTCTCGAAAA+AGG | - | chr7.1:14564159-14564178 | None:intergenic | 40.0% | |
| CGTTAATAGGGTTGTAACGA+AGG | - | chr7.1:14564127-14564146 | None:intergenic | 40.0% | |
| GAAATGAAGAACTGGGTTCT+TGG | + | chr7.1:14564968-14564987 | MS.gene017972:CDS | 40.0% | |
| GACAACCTAAGCTTAACTCT+TGG | - | chr7.1:14565337-14565356 | None:intergenic | 40.0% | |
| GAGATGGAAGCTAAAGAGAT+TGG | + | chr7.1:14564821-14564840 | MS.gene017972:CDS | 40.0% | |
| GCTTCTGACTGAAATTGAGA+TGG | + | chr7.1:14564805-14564824 | MS.gene017972:CDS | 40.0% | |
| GTTGCTTGAATGTAGGTAAG+AGG | + | chr7.1:14564912-14564931 | MS.gene017972:CDS | 40.0% | |
| TAATAGGGTTGTAACGAAGG+TGG | - | chr7.1:14564124-14564143 | None:intergenic | 40.0% | |
| TACCACACTCTGTGTAACTA+TGG | + | chr7.1:14564254-14564273 | MS.gene017972:CDS | 40.0% | |
| TCAAAAGAGGATCATCGTTG+AGG | - | chr7.1:14564226-14564245 | None:intergenic | 40.0% | |
| TGGAAACTCGAGAAACAAGA+GGG | - | chr7.1:14564738-14564757 | None:intergenic | 40.0% | |
| TGGTAATTCGCCATCAAAAG+AGG | - | chr7.1:14564239-14564258 | None:intergenic | 40.0% | |
| TGGTTTCAGTGAGAAACAGT+TGG | + | chr7.1:14564604-14564623 | MS.gene017972:CDS | 40.0% | |
| TTGCTTGGTTGCTTGAATGT+AGG | + | chr7.1:14564905-14564924 | MS.gene017972:CDS | 40.0% | |
| TTGTGCTTGCTTTCGAATGT+TGG | + | chr7.1:14564584-14564603 | MS.gene017972:CDS | 40.0% | |
| ! | ATTTTCCCCATTTTGGATCG+AGG | - | chr7.1:14564284-14564303 | None:intergenic | 40.0% |
| ! | CAACGATGATCCTCTTTTGA+TGG | + | chr7.1:14564226-14564245 | MS.gene017972:CDS | 40.0% |
| ! | TTTAAGGCGTTCAGAGGTAA+GGG | + | chr7.1:14565112-14565131 | MS.gene017972:CDS | 40.0% |
| !! | AGAAATGGATTGGGCGTTTA+AGG | + | chr7.1:14565096-14565115 | MS.gene017972:CDS | 40.0% |
| !! | GGTGATGGTGATTTTGATAG+TGG | + | chr7.1:14564500-14564519 | MS.gene017972:CDS | 40.0% |
| !! | TAAGCCTATGGTTGGCTTAA+GGG | + | chr7.1:14565000-14565019 | MS.gene017972:CDS | 40.0% |
| !! | TTAAGCCTATGGTTGGCTTA+AGG | + | chr7.1:14564999-14565018 | MS.gene017972:CDS | 40.0% |
| !! | TTGATAGTGGTTGGATTCAG+TGG | + | chr7.1:14564513-14564532 | MS.gene017972:CDS | 40.0% |
| !!! | GAACCCTTTTTCGAGAGTTT+GGG | + | chr7.1:14564152-14564171 | MS.gene017972:CDS | 40.0% |
| !!! | TCAGTGGCATTTTTTGGATG+AGG | + | chr7.1:14564529-14564548 | MS.gene017972:CDS | 40.0% |
| !!! | TGAACCCTTTTTCGAGAGTT+TGG | + | chr7.1:14564151-14564170 | MS.gene017972:CDS | 40.0% |
| AATGCTGTTGCTGTAAGTCC+AGG | + | chr7.1:14564404-14564423 | MS.gene017972:CDS | 45.0% | |
| ACAGAGTTCTTGTTGCGCTT+AGG | + | chr7.1:14565055-14565074 | MS.gene017972:CDS | 45.0% | |
| ACTGCAAGCTTCTTGTGGAA+TGG | - | chr7.1:14563992-14564011 | None:intergenic | 45.0% | |
| AGATCCCTTAAGCCAACCAT+AGG | - | chr7.1:14565007-14565026 | None:intergenic | 45.0% | |
| ATCTGGAAGAGGAGAAATCG+AGG | + | chr7.1:14565023-14565042 | MS.gene017972:CDS | 45.0% | |
| ATGCTGTTGCTGTAAGTCCA+GGG | + | chr7.1:14564405-14564424 | MS.gene017972:CDS | 45.0% | |
| ATTGTTGCAAAGGGTGGTGA+TGG | + | chr7.1:14564485-14564504 | MS.gene017972:CDS | 45.0% | |
| CACCATAGTTACACAGAGTG+TGG | - | chr7.1:14564259-14564278 | None:intergenic | 45.0% | |
| CAGTTGGCTGAGATTATTCG+AGG | + | chr7.1:14564620-14564639 | MS.gene017972:CDS | 45.0% | |
| CGAGTTTCCACAGATTTCGA+TGG | + | chr7.1:14564748-14564767 | MS.gene017972:CDS | 45.0% | |
| CTTGTTGCGCTTAGGTTATG+TGG | + | chr7.1:14565063-14565082 | MS.gene017972:CDS | 45.0% | |
| GCAACTCTTCCCAAACTTGA+AGG | - | chr7.1:14565477-14565496 | None:intergenic | 45.0% | |
| GGTGTTCCTCGATCCAAAAT+GGG | + | chr7.1:14564275-14564294 | MS.gene017972:CDS | 45.0% | |
| GTGGAAACTCGAGAAACAAG+AGG | - | chr7.1:14564739-14564758 | None:intergenic | 45.0% | |
| GTGTTCCTCGATCCAAAATG+GGG | + | chr7.1:14564276-14564295 | MS.gene017972:CDS | 45.0% | |
| TATGTAAAACGCCATCCGTC+TGG | + | chr7.1:14565451-14565470 | MS.gene017972:CDS | 45.0% | |
| TCTGGAAGAGGAGAAATCGA+GGG | + | chr7.1:14565024-14565043 | MS.gene017972:CDS | 45.0% | |
| TGCAGCTTGGGCTTCTTTAA+TGG | - | chr7.1:14563955-14563974 | None:intergenic | 45.0% | |
| TGGTGTTCCTCGATCCAAAA+TGG | + | chr7.1:14564274-14564293 | MS.gene017972:CDS | 45.0% | |
| ! | GTTTAAGGCGTTCAGAGGTA+AGG | + | chr7.1:14565111-14565130 | MS.gene017972:CDS | 45.0% |
| !! | ATAACTGGCTCGTTGACCAT+GGG | + | chr7.1:14565362-14565381 | MS.gene017972:CDS | 45.0% |
| !! | TATAACTGGCTCGTTGACCA+TGG | + | chr7.1:14565361-14565380 | MS.gene017972:CDS | 45.0% |
| !! | TATGGTTGGCTTAAGGGATC+TGG | + | chr7.1:14565006-14565025 | MS.gene017972:CDS | 45.0% |
| AAACTTGAAGGCCAGACGGA+TGG | - | chr7.1:14565465-14565484 | None:intergenic | 50.0% | |
| AAGAGGAGAAATCGAGGGTG+GGG | + | chr7.1:14565029-14565048 | MS.gene017972:CDS | 50.0% | |
| AATGGTGCTCAAAGCAAGCC+CGG | - | chr7.1:14565398-14565417 | None:intergenic | 50.0% | |
| ACATCACCAACCAGAATCCC+TGG | - | chr7.1:14564425-14564444 | None:intergenic | 50.0% | |
| CAGTCTCACACAGTACTTGC+GGG | + | chr7.1:14564854-14564873 | MS.gene017972:CDS | 50.0% | |
| CCAGTCTCACACAGTACTTG+CGG | + | chr7.1:14564853-14564872 | MS.gene017972:CDS | 50.0% | |
| CGAGAAACAAGAGGGCAATC+TGG | - | chr7.1:14564730-14564749 | None:intergenic | 50.0% | |
| CTGAAGACACACCCTCAAGT+TGG | - | chr7.1:14564786-14564805 | None:intergenic | 50.0% | |
| GAAGAGGAGAAATCGAGGGT+GGG | + | chr7.1:14565028-14565047 | MS.gene017972:CDS | 50.0% | |
| GCGTCTATGTAGCATACTGC+AGG | + | chr7.1:14564934-14564953 | MS.gene017972:CDS | 50.0% | |
| GGCAAGACACTCTCGATGAT+TGG | + | chr7.1:14564674-14564693 | MS.gene017972:CDS | 50.0% | |
| GTAAGTCCAGGGATTCTGGT+TGG | + | chr7.1:14564416-14564435 | MS.gene017972:CDS | 50.0% | |
| TCCCAAACTTGAAGGCCAGA+CGG | - | chr7.1:14565469-14565488 | None:intergenic | 50.0% | |
| TGCTGTAAGTCCAGGGATTC+TGG | + | chr7.1:14564412-14564431 | MS.gene017972:CDS | 50.0% | |
| TGGCTTAAGGGATCTGGAAG+AGG | + | chr7.1:14565012-14565031 | MS.gene017972:CDS | 50.0% | |
| ! | ATCCGTCTGGCCTTCAAGTT+TGG | + | chr7.1:14565464-14565483 | MS.gene017972:CDS | 50.0% |
| ! | TCCGTCTGGCCTTCAAGTTT+GGG | + | chr7.1:14565465-14565484 | MS.gene017972:CDS | 50.0% |
| !! | TAACTGGCTCGTTGACCATG+GGG | + | chr7.1:14565363-14565382 | MS.gene017972:CDS | 50.0% |
| ACCATGGGGCTGTAAATCCC+GGG | + | chr7.1:14565377-14565396 | MS.gene017972:CDS | 55.0% | |
| AGGTAAGGGAGCTGAGCTTC+AGG | + | chr7.1:14565126-14565145 | MS.gene017972:CDS | 55.0% | |
| ATGGTGCTCAAAGCAAGCCC+GGG | - | chr7.1:14565397-14565416 | None:intergenic | 55.0% | |
| GACCATGGGGCTGTAAATCC+CGG | + | chr7.1:14565376-14565395 | MS.gene017972:CDS | 55.0% | |
| GGAAGAGGAGAAATCGAGGG+TGG | + | chr7.1:14565027-14565046 | MS.gene017972:CDS | 55.0% | |
| ! | CCGCAAGTACTGTGTGAGAC+TGG | - | chr7.1:14564856-14564875 | None:intergenic | 55.0% |
| ! | TGGGCGTTTAAGGCGTTCAG+AGG | + | chr7.1:14565106-14565125 | MS.gene017972:CDS | 55.0% |
| GCCCGGGATTTACAGCCCCA+TGG | - | chr7.1:14565381-14565400 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 14563798 | 14565525 | 14563798 | ID=MS.gene017972 |
| chr7.1 | mRNA | 14563798 | 14565525 | 14563798 | ID=MS.gene017972.t1;Parent=MS.gene017972 |
| chr7.1 | exon | 14563798 | 14565525 | 14563798 | ID=MS.gene017972.t1.exon1;Parent=MS.gene017972.t1 |
| chr7.1 | CDS | 14563798 | 14565525 | 14563798 | ID=cds.MS.gene017972.t1;Parent=MS.gene017972.t1 |
| Gene Sequence |
| Protein sequence |
