AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017973

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017973.t1 MTR_7g093010 91.304 368 21 3 1 366 1 359 0.0 666
MS.gene017973.t1 MTR_1g053800 41.441 333 157 9 35 356 9 314 9.42e-57 188
MS.gene017973.t1 MTR_1g053835 43.275 171 87 3 191 352 220 389 1.54e-30 120
MS.gene017973.t1 MTR_7g093030 44.604 139 75 1 222 358 212 350 5.56e-27 110
MS.gene017973.t1 MTR_1g080330 42.647 136 77 1 212 346 165 300 5.22e-25 105
MS.gene017973.t1 MTR_7g098250 39.394 165 86 4 190 346 229 387 3.96e-24 103
MS.gene017973.t1 MTR_7g115530 43.651 126 70 1 222 346 218 343 2.73e-23 100
MS.gene017973.t1 MTR_2g027860 41.912 136 68 3 222 350 49 180 1.49e-21 94.4
MS.gene017973.t1 MTR_7g088070 32.877 146 98 0 205 350 33 178 1.09e-20 90.9
MS.gene017973.t1 MTR_7g088070 33.766 154 90 2 205 350 33 182 1.33e-20 90.9
MS.gene017973.t1 MTR_1g080330 40.678 118 69 1 212 328 165 282 2.14e-19 87.4
MS.gene017973.t1 MTR_5g027440 37.241 145 75 3 222 351 25 168 1.56e-17 82.0
MS.gene017973.t1 MTR_7g115530 40.741 108 63 1 222 328 218 325 3.86e-17 81.6
MS.gene017973.t1 MTR_7g093030 50.000 82 41 0 222 303 212 293 8.96e-17 80.1
MS.gene017973.t1 MTR_6g032990 35.461 141 74 2 221 344 41 181 8.36e-16 78.6
MS.gene017973.t1 MTR_6g444980 36.154 130 73 3 222 344 35 161 3.97e-15 76.3
MS.gene017973.t1 MTR_6g444980 36.154 130 73 3 222 344 35 161 5.05e-15 75.9
MS.gene017973.t1 MTR_2g027800 33.858 127 83 1 222 348 39 164 1.08e-14 74.3
MS.gene017973.t1 MTR_2g086450 33.113 151 68 3 221 344 44 188 1.29e-14 74.7
MS.gene017973.t1 MTR_1g090670 33.803 142 90 1 222 363 44 181 2.70e-14 73.2
MS.gene017973.t1 MTR_2g027800 32.886 149 85 3 222 363 39 179 1.53e-13 70.9
MS.gene017973.t1 MTR_7g068600 36.364 132 72 4 220 343 11 138 2.66e-13 69.3
MS.gene017973.t1 MTR_7g115530 41.237 97 44 2 222 318 218 301 3.65e-13 69.7
MS.gene017973.t1 MTR_8g086410 51.667 60 29 0 224 283 113 172 1.08e-12 69.3
MS.gene017973.t1 MTR_8g086410 60.377 53 21 0 224 276 111 163 1.37e-12 68.9
MS.gene017973.t1 MTR_8g086410 60.377 53 21 0 224 276 113 165 1.38e-12 68.9
MS.gene017973.t1 MTR_1g053830 42.391 92 47 3 206 296 1 87 2.09e-12 63.2
MS.gene017973.t1 MTR_7g115530 53.571 56 26 0 222 277 218 273 2.33e-12 67.8
MS.gene017973.t1 MTR_4g081710 31.852 135 80 2 222 344 17 151 4.94e-12 66.6
MS.gene017973.t1 MTR_7g115530 55.769 52 23 0 222 273 218 269 5.00e-12 66.2
MS.gene017973.t1 MTR_2g023580 47.826 69 29 1 215 276 41 109 1.99e-11 63.9
MS.gene017973.t1 MTR_3g450310 53.704 54 25 0 224 277 21 74 2.27e-11 63.2
MS.gene017973.t1 MTR_2g084230 56.604 53 23 0 224 276 99 151 2.83e-11 64.3
MS.gene017973.t1 MTR_7g115530 54.902 51 23 0 222 272 218 268 3.02e-11 63.9
MS.gene017973.t1 MTR_2g084230 56.604 53 23 0 224 276 99 151 3.50e-11 64.3
MS.gene017973.t1 MTR_0223s0040 45.714 70 37 1 224 293 20 88 4.73e-11 63.2
MS.gene017973.t1 MTR_7g069660 56.604 53 23 0 224 276 73 125 7.07e-11 63.2
MS.gene017973.t1 MTR_2g016220 54.717 53 24 0 224 276 91 143 7.42e-11 63.5
MS.gene017973.t1 MTR_2g016220 54.717 53 24 0 224 276 91 143 7.68e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017973.t1 AT5G06800 44.444 135 73 1 218 350 186 320 5.86e-27 110
MS.gene017973.t1 AT5G06800 45.000 140 70 2 218 350 186 325 2.38e-26 108
MS.gene017973.t1 AT2G01060 38.272 162 88 3 210 365 3 158 7.42e-24 100
MS.gene017973.t1 AT3G13040 36.813 182 99 3 194 364 213 389 5.88e-23 100
MS.gene017973.t1 AT3G13040 36.813 182 99 3 194 364 213 389 5.88e-23 100
MS.gene017973.t1 AT3G13040 36.813 182 99 3 194 364 213 389 5.88e-23 100
MS.gene017973.t1 AT5G29000 40.141 142 79 3 210 346 219 359 8.58e-23 99.0
MS.gene017973.t1 AT5G29000 40.141 142 79 3 210 346 176 316 1.01e-22 98.6
MS.gene017973.t1 AT5G29000 40.141 142 79 3 210 346 176 316 1.01e-22 98.6
MS.gene017973.t1 AT3G04450 40.909 132 72 2 220 346 236 366 1.53e-22 98.6
MS.gene017973.t1 AT3G04450 40.909 132 72 2 220 346 196 326 1.80e-22 98.2
MS.gene017973.t1 AT3G04450 40.909 132 72 2 220 346 196 326 1.80e-22 98.2
MS.gene017973.t1 AT4G28610 41.497 147 81 3 202 346 208 351 1.95e-22 98.2
MS.gene017973.t1 AT4G13640 36.765 136 73 3 222 344 37 172 6.54e-17 80.5
MS.gene017973.t1 AT1G79430 37.500 128 74 3 222 344 34 160 1.50e-16 80.5
MS.gene017973.t1 AT2G20400 38.686 137 72 3 222 352 231 361 2.17e-16 80.5
MS.gene017973.t1 AT3G24120 36.765 136 73 2 222 344 41 176 2.30e-16 79.0
MS.gene017973.t1 AT2G20400 38.686 137 73 3 222 352 231 362 5.33e-16 79.3
MS.gene017973.t1 AT3G04030 34.965 143 71 3 221 344 44 183 1.02e-15 78.2
MS.gene017973.t1 AT5G18240 34.286 140 76 2 221 344 44 183 1.54e-15 77.8
MS.gene017973.t1 AT5G18240 34.286 140 76 2 221 344 44 183 1.54e-15 77.8
MS.gene017973.t1 AT5G06800 61.667 60 21 1 218 275 186 245 2.03e-15 76.3
MS.gene017973.t1 AT4G13640 35.971 139 73 4 222 344 37 175 3.59e-15 75.5
MS.gene017973.t1 AT3G24120 35.971 139 73 3 222 344 41 179 1.23e-14 73.9
MS.gene017973.t1 AT1G69580 34.868 152 75 4 222 351 34 183 1.34e-14 74.3
MS.gene017973.t1 AT1G69580 33.987 153 76 4 222 351 34 184 3.83e-14 73.2
MS.gene017973.t1 AT5G29000 48.529 68 35 0 210 277 219 286 7.13e-14 72.0
MS.gene017973.t1 AT3G04450 51.724 58 28 0 220 277 236 293 2.34e-13 70.5
MS.gene017973.t1 AT2G42660 60.377 53 21 0 224 276 52 104 2.35e-13 69.7
MS.gene017973.t1 AT5G18240 33.571 140 75 3 221 344 44 181 2.76e-13 70.9
MS.gene017973.t1 AT3G12730 54.098 61 28 0 222 282 23 83 4.11e-13 68.6
MS.gene017973.t1 AT3G04030 33.566 143 72 4 221 344 44 182 5.04e-13 70.1
MS.gene017973.t1 AT2G06020 31.387 137 80 3 147 275 9 139 2.47e-12 67.4
MS.gene017973.t1 AT4G04605 47.619 63 32 1 224 286 16 77 4.23e-12 65.5
MS.gene017973.t1 AT3G04030 33.333 126 62 3 221 327 44 166 1.33e-11 65.9
MS.gene017973.t1 AT5G18240 30.556 144 79 3 221 343 44 187 1.83e-11 65.5
MS.gene017973.t1 AT5G18240 30.556 144 79 3 221 343 44 187 1.83e-11 65.5
MS.gene017973.t1 AT2G40260 54.717 53 24 0 224 276 84 136 1.88e-11 65.5
MS.gene017973.t1 AT1G14600 45.455 77 38 1 205 277 2 78 4.72e-11 63.2
MS.gene017973.t1 AT4G04555 54.902 51 23 0 226 276 18 68 6.43e-11 59.3
MS.gene017973.t1 AT2G38300 56.604 53 23 0 224 276 56 108 9.28e-11 62.8
MS.gene017973.t1 AT5G42630 40.506 79 45 1 201 277 82 160 9.76e-11 61.6

Find 60 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACAATTGACCTGTTATT+TGG 0.085317 7.1:-14557493 None:intergenic
AAGCAGACTCCTCAACTTTA+TGG 0.179376 7.1:+14556458 MS.gene017973:CDS
GAACCAACCAAAGAAAATTT+TGG 0.205784 7.1:+14557448 MS.gene017973:CDS
CTTCTAACAATTCTGCTTCT+AGG 0.211425 7.1:+14556492 MS.gene017973:CDS
GAGGATGAGATTGAAGTTTC+TGG 0.281912 7.1:+14555341 MS.gene017973:CDS
AAGTATTTCGCAACAGTTAG+AGG 0.311657 7.1:+14557228 MS.gene017973:CDS
AAACAATTGACCTGTTATTT+GGG 0.315634 7.1:-14557492 None:intergenic
CAAACATCTCATGATGGTTT+TGG 0.318369 7.1:+14555257 MS.gene017973:CDS
ATTGGAGGGTCTGTTATCTT+TGG 0.328987 7.1:-14555383 None:intergenic
TCATGTTAAAAGCCATTTGC+AGG 0.345777 7.1:+14556734 MS.gene017973:CDS
ACGCATGCATAAAGCTTTGC+AGG 0.361361 7.1:+14556881 MS.gene017973:CDS
GTGATTCCTCAATTTGCTTA+AGG 0.361437 7.1:-14557180 None:intergenic
TTCAAGGGGCTTCTCATCAA+TGG 0.375794 7.1:-14555612 None:intergenic
AACAACCTAGTTAAGGTTGT+TGG 0.392826 7.1:+14555146 MS.gene017973:CDS
TTCTCTGAAAAGAAATTTCA+AGG 0.402613 7.1:-14555628 None:intergenic
TAGGTTGTTAATTCCTATGT+AGG 0.408171 7.1:-14555132 None:intergenic
AGGAATTAACAACCTAGTTA+AGG 0.413307 7.1:+14555139 MS.gene017973:CDS
TGTAGTGACAATGTTGTTGC+AGG 0.413465 7.1:-14555222 None:intergenic
TGTGTTCTGATCCAACAATT+TGG 0.429748 7.1:-14555175 None:intergenic
ACAACCTAGTTAAGGTTGTT+GGG 0.437913 7.1:+14555147 MS.gene017973:CDS
CAACATTGGTCAAAGATGTA+TGG 0.453490 7.1:+14555095 MS.gene017973:CDS
GTTGGGTCAGACCAAATTGT+TGG 0.464581 7.1:+14555164 MS.gene017973:CDS
CATACATCTTTGACCAATGT+TGG 0.474221 7.1:-14555094 None:intergenic
CAAAGATGTATGGAACTCAA+TGG 0.475646 7.1:+14555105 MS.gene017973:CDS
TGTAAAATTCTCTCCTCCAT+AGG 0.496495 7.1:-14555420 None:intergenic
AAAGATGTATGGAACTCAAT+GGG 0.496984 7.1:+14555106 MS.gene017973:CDS
TCTGTTCTATGTCCTTCCTC+AGG 0.498706 7.1:-14557003 None:intergenic
ATGCTGAATTGTCAAGCCTA+TGG 0.501729 7.1:+14555404 MS.gene017973:CDS
CTTTGACCAATGTTGGTACA+TGG 0.506794 7.1:-14555087 None:intergenic
TTGTTGCAGGGTGACTTGAT+TGG 0.508916 7.1:-14555209 None:intergenic
CAAGGTCAAACATCTCATGA+TGG 0.511209 7.1:+14555251 MS.gene017973:CDS
CTGACCCAACAACCTTAACT+AGG 0.516049 7.1:-14555151 None:intergenic
TAGCAGCCTTAAGCAAATTG+AGG 0.522396 7.1:+14557174 MS.gene017973:intron
GCTTGACAATTCAGCATTGG+AGG 0.527222 7.1:-14555398 None:intergenic
CTCTGAAAAGAAATTTCAAG+GGG 0.530710 7.1:-14555626 None:intergenic
CATGTAAAAGAAGAGTAAGA+TGG 0.531937 7.1:+14556525 MS.gene017973:CDS
TCTCTGAAAAGAAATTTCAA+GGG 0.533832 7.1:-14555627 None:intergenic
TAGGCTTGACAATTCAGCAT+TGG 0.547239 7.1:-14555401 None:intergenic
AGATTCATCAACAGAGTACA+AGG 0.551613 7.1:-14555462 None:intergenic
AATTGCAGAGGCAAAGCCTA+AGG 0.561046 7.1:+14556671 MS.gene017973:intron
ATGATAATCGTTGATCACCT+TGG 0.567335 7.1:+14556572 MS.gene017973:CDS
ATCATATCTAGTATAGCCTT+AGG 0.576046 7.1:-14556687 None:intergenic
ACTCAATGGGAATCCTACAT+AGG 0.576742 7.1:+14555119 MS.gene017973:CDS
AGAAGCAGAATTGTTAGAAG+TGG 0.580769 7.1:-14556489 None:intergenic
CTTGACAATTCAGCATTGGA+GGG 0.587253 7.1:-14555397 None:intergenic
ATAATCGTTGATCACCTTGG+TGG 0.592004 7.1:+14556575 MS.gene017973:CDS
ATGAGATTGAAGTTTCTGGT+TGG 0.603059 7.1:+14555345 MS.gene017973:CDS
AACCAACCATGTACCAACAT+TGG 0.603963 7.1:+14555081 None:intergenic
TTAAGCAAATTGAGGAATCA+CGG 0.605256 7.1:+14557182 MS.gene017973:CDS
CGCATGCATAAAGCTTTGCA+GGG 0.606639 7.1:+14556882 MS.gene017973:CDS
CTGAATTGTCAAGCCTATGG+AGG 0.616055 7.1:+14555407 MS.gene017973:CDS
AAGAAGAGTAAGATGGACAG+AGG 0.623246 7.1:+14556532 MS.gene017973:CDS
ATCACGGCAGTTGCATCTAG+AGG 0.629262 7.1:+14557198 MS.gene017973:CDS
GCACACATTCCATAAAGTTG+AGG 0.636332 7.1:-14556467 None:intergenic
CTTTCAGAAAGACCTGAGGA+AGG 0.638784 7.1:+14556991 MS.gene017973:intron
AGGTGAAGAATATTATGATG+AGG 0.647413 7.1:+14555322 MS.gene017973:CDS
GTAGTGACAATGTTGTTGCA+GGG 0.658470 7.1:-14555221 None:intergenic
CAAGGAGTTTGTGAACTGAG+AGG 0.666646 7.1:-14555444 None:intergenic
TTATCTTTCAGAAAGACCTG+AGG 0.675030 7.1:+14556987 MS.gene017973:intron
ACTTACTTTCTGGACCACCA+AGG 0.699661 7.1:-14556589 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAACAAATAAAAACA+AGG - chr7.1:14557348-14557367 None:intergenic 10.0%
!! AAAACTAAAAAGAAAATCAA+TGG + chr7.1:14556141-14556160 MS.gene017973:intron 15.0%
!! AAATTATTGAAATTGTTGAA+TGG - chr7.1:14556771-14556790 None:intergenic 15.0%
!! AGGAAAATAAACAAATAAAA+AGG - chr7.1:14556381-14556400 None:intergenic 15.0%
!! ATCTAATACTATAATTAAAC+AGG - chr7.1:14555820-14555839 None:intergenic 15.0%
!! GAATCTAATTATGAAATTTA+GGG + chr7.1:14556004-14556023 MS.gene017973:intron 15.0%
!! TCTAATAAAATTGATTAAAG+TGG + chr7.1:14556085-14556104 MS.gene017973:intron 15.0%
!! TGAATCTAATTATGAAATTT+AGG + chr7.1:14556003-14556022 MS.gene017973:intron 15.0%
!! TTACTAGTAATCTATTTATT+CGG + chr7.1:14556291-14556310 MS.gene017973:intron 15.0%
!!! TCATGGATTTTTTTTTTTAA+TGG + chr7.1:14555866-14555885 MS.gene017973:intron 15.0%
!! AAAAACATGATGAATTGTTT+AGG + chr7.1:14555579-14555598 MS.gene017973:CDS 20.0%
!! AAATCCATGAAATACTTAAA+AGG - chr7.1:14555856-14555875 None:intergenic 20.0%
!! AATATACAATTATGCTTTGA+TGG + chr7.1:14557252-14557271 MS.gene017973:intron 20.0%
!! AATTAGATTCATTGCATATA+TGG - chr7.1:14555994-14556013 None:intergenic 20.0%
!! CATTTCATATATAATTCAGA+TGG - chr7.1:14555709-14555728 None:intergenic 20.0%
!! TACTAGTAATCTATTTATTC+GGG + chr7.1:14556292-14556311 MS.gene017973:intron 20.0%
!! TTAGTTAATTACTTACTTTC+TGG - chr7.1:14556602-14556621 None:intergenic 20.0%
!!! AAAAGTAATGTTAGTTTTCA+AGG + chr7.1:14555302-14555321 MS.gene017973:CDS 20.0%
!!! AACAATTCATCATGTTTTTT+CGG - chr7.1:14555578-14555597 None:intergenic 20.0%
!!! AAGAATACTGTAACTTTTTT+TGG - chr7.1:14555784-14555803 None:intergenic 20.0%
!!! ACTAACATTACTTTTGATTT+TGG - chr7.1:14555297-14555316 None:intergenic 20.0%
!!! AGTTGGGAATTATTTTTTAA+AGG + chr7.1:14556185-14556204 MS.gene017973:intron 20.0%
!!! TCACATAAACATTCTTTTAA+CGG + chr7.1:14556108-14556127 MS.gene017973:intron 20.0%
! ATTAGAAAAACACGTTAGAT+TGG - chr7.1:14556071-14556090 None:intergenic 25.0%
! CAAATAAAAACAAGGTTGTA+AGG - chr7.1:14557340-14557359 None:intergenic 25.0%
! TGGATTATAGCTTATTAGAA+AGG - chr7.1:14556401-14556420 None:intergenic 25.0%
!! AATTTCTTTTCAGAGAACTA+AGG + chr7.1:14555634-14555653 MS.gene017973:CDS 25.0%
!! ATTGTCACTACAAATTTTCA+AGG + chr7.1:14555233-14555252 MS.gene017973:CDS 25.0%
!! GAATATAGTAATTTTCAGTC+TGG + chr7.1:14555527-14555546 MS.gene017973:CDS 25.0%
!! TCTCTGAAAAGAAATTTCAA+GGG - chr7.1:14555630-14555649 None:intergenic 25.0%
!! TTCTCTGAAAAGAAATTTCA+AGG - chr7.1:14555631-14555650 None:intergenic 25.0%
!!! AAATTTAGGGTTTTGTGAAA+GGG + chr7.1:14556017-14556036 MS.gene017973:intron 25.0%
!!! TAGTCCTTTTAAGTATTTCA+TGG + chr7.1:14555849-14555868 MS.gene017973:intron 25.0%
!!! TTTTTTTCTCTTCTGATTAC+TGG + chr7.1:14557116-14557135 MS.gene017973:intron 25.0%
AAAGATGTATGGAACTCAAT+GGG + chr7.1:14555106-14555125 MS.gene017973:CDS 30.0%
AAAGGGACAATAATGAATTG+CGG + chr7.1:14556034-14556053 MS.gene017973:intron 30.0%
AAGTTATGGGACTTATAGTT+GGG + chr7.1:14556169-14556188 MS.gene017973:intron 30.0%
ACAACACTGCTTACTTATTA+AGG + chr7.1:14556933-14556952 MS.gene017973:intron 30.0%
ACAATGTTAGAGTCAATTAC+CGG - chr7.1:14556823-14556842 None:intergenic 30.0%
AGGAATTAACAACCTAGTTA+AGG + chr7.1:14555139-14555158 MS.gene017973:CDS 30.0%
AGGTGAAGAATATTATGATG+AGG + chr7.1:14555322-14555341 MS.gene017973:CDS 30.0%
ATCATATCTAGTATAGCCTT+AGG - chr7.1:14556690-14556709 None:intergenic 30.0%
CATGTAAAAGAAGAGTAAGA+TGG + chr7.1:14556525-14556544 MS.gene017973:CDS 30.0%
TAGGTTGTTAATTCCTATGT+AGG - chr7.1:14555135-14555154 None:intergenic 30.0%
TGGTTTCATCTATTTGTGAA+TGG + chr7.1:14555886-14555905 MS.gene017973:intron 30.0%
TTAAGCAAATTGAGGAATCA+CGG + chr7.1:14557182-14557201 MS.gene017973:CDS 30.0%
! AAACATTCTTTTAACGGAGT+TGG + chr7.1:14556114-14556133 MS.gene017973:intron 30.0%
! ATGGCTTTTAACATGAGAAA+TGG - chr7.1:14556730-14556749 None:intergenic 30.0%
! CTCTGAAAAGAAATTTCAAG+GGG - chr7.1:14555629-14555648 None:intergenic 30.0%
! CTTACTCTTCTTTTACATGT+TGG - chr7.1:14556524-14556543 None:intergenic 30.0%
! GAACCAACCAAAGAAAATTT+TGG + chr7.1:14557448-14557467 MS.gene017973:CDS 30.0%
! GTTGTGTCCAAAATTTTCTT+TGG - chr7.1:14557458-14557477 None:intergenic 30.0%
! TGTCCAAAATTTTCTTTGGT+TGG - chr7.1:14557454-14557473 None:intergenic 30.0%
! TTCACTGATTATAATTGCAG+AGG + chr7.1:14556659-14556678 MS.gene017973:intron 30.0%
!! GAAATAGTTTTACCTGCAAA+TGG - chr7.1:14556749-14556768 None:intergenic 30.0%
!! GAAATTTAGGGTTTTGTGAA+AGG + chr7.1:14556016-14556035 MS.gene017973:intron 30.0%
AACAACCTAGTTAAGGTTGT+TGG + chr7.1:14555146-14555165 MS.gene017973:CDS 35.0%
AAGTATTTCGCAACAGTTAG+AGG + chr7.1:14557228-14557247 MS.gene017973:CDS 35.0%
AATCAATGGTGTCCAAGTTA+TGG + chr7.1:14556155-14556174 MS.gene017973:intron 35.0%
ACAACCTAGTTAAGGTTGTT+GGG + chr7.1:14555147-14555166 MS.gene017973:CDS 35.0%
ACACTGCTTACTTATTAAGG+AGG + chr7.1:14556936-14556955 MS.gene017973:intron 35.0%
AGAAGCAGAATTGTTAGAAG+TGG - chr7.1:14556492-14556511 None:intergenic 35.0%
AGATTCATCAACAGAGTACA+AGG - chr7.1:14555465-14555484 None:intergenic 35.0%
ATCAATGGTGTCCAAGTTAT+GGG + chr7.1:14556156-14556175 MS.gene017973:intron 35.0%
ATCCATGACTTACTATAGTC+AGG + chr7.1:14556416-14556435 MS.gene017973:intron 35.0%
ATGATAATCGTTGATCACCT+TGG + chr7.1:14556572-14556591 MS.gene017973:CDS 35.0%
ATTTCTCCAACTCGTCAATT+AGG + chr7.1:14556340-14556359 MS.gene017973:intron 35.0%
CAAAGATGTATGGAACTCAA+TGG + chr7.1:14555105-14555124 MS.gene017973:CDS 35.0%
CAACATTGGTCAAAGATGTA+TGG + chr7.1:14555095-14555114 MS.gene017973:CDS 35.0%
CAACTATAAGTCCCATAACT+TGG - chr7.1:14556170-14556189 None:intergenic 35.0%
CAAGTTATGGGACTTATAGT+TGG + chr7.1:14556168-14556187 MS.gene017973:intron 35.0%
CAATATCCTAATTGACGAGT+TGG - chr7.1:14556349-14556368 None:intergenic 35.0%
CATACATCTTTGACCAATGT+TGG - chr7.1:14555097-14555116 None:intergenic 35.0%
CTTCTAACAATTCTGCTTCT+AGG + chr7.1:14556492-14556511 MS.gene017973:CDS 35.0%
GTTGTAAGGATATACGACTT+TGG - chr7.1:14557326-14557345 None:intergenic 35.0%
TCATGTTAAAAGCCATTTGC+AGG + chr7.1:14556734-14556753 MS.gene017973:CDS 35.0%
TGTAAAATTCTCTCCTCCAT+AGG - chr7.1:14555423-14555442 None:intergenic 35.0%
TGTGAATGGTGAATTGTGTT+GGG + chr7.1:14555900-14555919 MS.gene017973:intron 35.0%
TGTGTTCTGATCCAACAATT+TGG - chr7.1:14555178-14555197 None:intergenic 35.0%
TTATCTTTCAGAAAGACCTG+AGG + chr7.1:14556987-14557006 MS.gene017973:intron 35.0%
TTGTGAATGGTGAATTGTGT+TGG + chr7.1:14555899-14555918 MS.gene017973:intron 35.0%
TTGTGATATGGGGAATAAGA+AGG + chr7.1:14555927-14555946 MS.gene017973:intron 35.0%
TTTAGGCAAAATACATCGTG+CGG - chr7.1:14556243-14556262 None:intergenic 35.0%
! AATTTTGGACACAACGAGAA+AGG + chr7.1:14557463-14557482 MS.gene017973:CDS 35.0%
! ATTCTTTTAACGGAGTTGGA+TGG + chr7.1:14556118-14556137 MS.gene017973:intron 35.0%
! CAAACATCTCATGATGGTTT+TGG + chr7.1:14555257-14555276 MS.gene017973:CDS 35.0%
! GTGATTCCTCAATTTGCTTA+AGG - chr7.1:14557183-14557202 None:intergenic 35.0%
!! ATGAGATTGAAGTTTCTGGT+TGG + chr7.1:14555345-14555364 MS.gene017973:CDS 35.0%
!!! CATCATGTTTTTTCGGAAAG+TGG - chr7.1:14555571-14555590 None:intergenic 35.0%
AAGAAGAGTAAGATGGACAG+AGG + chr7.1:14556532-14556551 MS.gene017973:CDS 40.0%
AAGCAGACTCCTCAACTTTA+TGG + chr7.1:14556458-14556477 MS.gene017973:CDS 40.0%
ACTCAATGGGAATCCTACAT+AGG + chr7.1:14555119-14555138 MS.gene017973:CDS 40.0%
AGCCTGACTATAGTAAGTCA+TGG - chr7.1:14556421-14556440 None:intergenic 40.0%
ATAATCGTTGATCACCTTGG+TGG + chr7.1:14556575-14556594 MS.gene017973:CDS 40.0%
ATAATGAATTGCGGAGGGTA+AGG + chr7.1:14556043-14556062 MS.gene017973:intron 40.0%
ATGCTGAATTGTCAAGCCTA+TGG + chr7.1:14555404-14555423 MS.gene017973:CDS 40.0%
ATTGGAGGGTCTGTTATCTT+TGG - chr7.1:14555386-14555405 None:intergenic 40.0%
CAAGGTCAAACATCTCATGA+TGG + chr7.1:14555251-14555270 MS.gene017973:CDS 40.0%
GAGGATGAGATTGAAGTTTC+TGG + chr7.1:14555341-14555360 MS.gene017973:CDS 40.0%
GCAACTTTCTTTGCGTCTAA+AGG - chr7.1:14557377-14557396 None:intergenic 40.0%
GCACACATTCCATAAAGTTG+AGG - chr7.1:14556470-14556489 None:intergenic 40.0%
GGACAATAATGAATTGCGGA+GGG + chr7.1:14556038-14556057 MS.gene017973:intron 40.0%
GTAGTGACAATGTTGTTGCA+GGG - chr7.1:14555224-14555243 None:intergenic 40.0%
TAATGAATTGCGGAGGGTAA+GGG + chr7.1:14556044-14556063 MS.gene017973:intron 40.0%
TAGCAGCCTTAAGCAAATTG+AGG + chr7.1:14557174-14557193 MS.gene017973:intron 40.0%
TAGGCTTGACAATTCAGCAT+TGG - chr7.1:14555404-14555423 None:intergenic 40.0%
TGTAGATCGACATTTCTGCA+CGG - chr7.1:14556859-14556878 None:intergenic 40.0%
TGTAGTGACAATGTTGTTGC+AGG - chr7.1:14555225-14555244 None:intergenic 40.0%
TGTTGGGCTGATTGTGATAT+GGG + chr7.1:14555916-14555935 MS.gene017973:intron 40.0%
! AGCGCTATTACGTCGATTAA+AGG + chr7.1:14556216-14556235 MS.gene017973:intron 40.0%
! CTTGACAATTCAGCATTGGA+GGG - chr7.1:14555400-14555419 None:intergenic 40.0%
! GACGAGTTGGAGAAATTGTT+AGG - chr7.1:14556336-14556355 None:intergenic 40.0%
! GCGCTATTACGTCGATTAAA+GGG + chr7.1:14556217-14556236 MS.gene017973:intron 40.0%
! TCAATTTGCTTAAGGCTGCT+AGG - chr7.1:14557175-14557194 None:intergenic 40.0%
! TTTTGCACATGCGTGACTTT+AGG - chr7.1:14556260-14556279 None:intergenic 40.0%
AATTGCAGAGGCAAAGCCTA+AGG + chr7.1:14556671-14556690 MS.gene017973:intron 45.0%
ACGCATGCATAAAGCTTTGC+AGG + chr7.1:14556881-14556900 MS.gene017973:CDS 45.0%
ACTTACTTTCTGGACCACCA+AGG - chr7.1:14556592-14556611 None:intergenic 45.0%
CAAGGAGTTTGTGAACTGAG+AGG - chr7.1:14555447-14555466 None:intergenic 45.0%
CGCATGCATAAAGCTTTGCA+GGG + chr7.1:14556882-14556901 MS.gene017973:CDS 45.0%
CTGAATTGTCAAGCCTATGG+AGG + chr7.1:14555407-14555426 MS.gene017973:CDS 45.0%
CTGACCCAACAACCTTAACT+AGG - chr7.1:14555154-14555173 None:intergenic 45.0%
CTTTCAGAAAGACCTGAGGA+AGG + chr7.1:14556991-14557010 MS.gene017973:intron 45.0%
GAGTCAATTACCGGCAAATG+AGG - chr7.1:14556814-14556833 None:intergenic 45.0%
GCTTAAGGCTGCTAGGAAAT+AGG - chr7.1:14557168-14557187 None:intergenic 45.0%
GGGACAATAATGAATTGCGG+AGG + chr7.1:14556037-14556056 MS.gene017973:intron 45.0%
GTGTTGGGCTGATTGTGATA+TGG + chr7.1:14555915-14555934 MS.gene017973:intron 45.0%
GTTGGGCTGATTGTGATATG+GGG + chr7.1:14555917-14555936 MS.gene017973:intron 45.0%
GTTGGGTCAGACCAAATTGT+TGG + chr7.1:14555164-14555183 MS.gene017973:CDS 45.0%
TCTGTTCTATGTCCTTCCTC+AGG - chr7.1:14557006-14557025 None:intergenic 45.0%
TTCAAGGGGCTTCTCATCAA+TGG - chr7.1:14555615-14555634 None:intergenic 45.0%
TTCTGTGAAGCCTCATTTGC+CGG + chr7.1:14556801-14556820 MS.gene017973:intron 45.0%
TTGTTGCAGGGTGACTTGAT+TGG - chr7.1:14555212-14555231 None:intergenic 45.0%
! GCTTGACAATTCAGCATTGG+AGG - chr7.1:14555401-14555420 None:intergenic 45.0%
ATCACGGCAGTTGCATCTAG+AGG + chr7.1:14557198-14557217 MS.gene017973:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 14555089 14557500 14555089 ID=MS.gene017973
chr7.1 mRNA 14555089 14557500 14555089 ID=MS.gene017973.t1;Parent=MS.gene017973
chr7.1 exon 14555089 14555655 14555089 ID=MS.gene017973.t1.exon1;Parent=MS.gene017973.t1
chr7.1 CDS 14555089 14555655 14555089 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
chr7.1 exon 14556434 14556605 14556434 ID=MS.gene017973.t1.exon2;Parent=MS.gene017973.t1
chr7.1 CDS 14556434 14556605 14556434 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
chr7.1 exon 14556679 14556755 14556679 ID=MS.gene017973.t1.exon3;Parent=MS.gene017973.t1
chr7.1 CDS 14556679 14556755 14556679 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
chr7.1 exon 14556864 14556903 14556864 ID=MS.gene017973.t1.exon4;Parent=MS.gene017973.t1
chr7.1 CDS 14556864 14556903 14556864 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
chr7.1 exon 14556998 14557052 14556998 ID=MS.gene017973.t1.exon5;Parent=MS.gene017973.t1
chr7.1 CDS 14556998 14557052 14556998 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
chr7.1 exon 14557180 14557249 14557180 ID=MS.gene017973.t1.exon6;Parent=MS.gene017973.t1
chr7.1 CDS 14557180 14557249 14557180 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
chr7.1 exon 14557381 14557500 14557381 ID=MS.gene017973.t1.exon7;Parent=MS.gene017973.t1
chr7.1 CDS 14557381 14557500 14557381 ID=cds.MS.gene017973.t1;Parent=MS.gene017973.t1
Gene Sequence

>MS.gene017973

ATGTACCAACATTGGTCAAAGATGTATGGAACTCAATGGGAATCCTACATAGGAATTAACAACCTAGTTAAGGTTGTTGGGTCAGACCAAATTGTTGGATCAGAACACATGAGTTATGAGCCAATCAAGTCACCCTGCAACAACATTGTCACTACAAATTTTCAAGGTCAAACATCTCATGATGGTTTTGGTGCAGTGAGTGTAGCCAAAATCAAAAGTAATGTTAGTTTTCAAGGTGAAGAATATTATGATGAGGATGAGATTGAAGTTTCTGGTTGGTGTTTTGATCAGTTTCCAAAGATAACAGACCCTCCAATGCTGAATTGTCAAGCCTATGGAGGAGAGAATTTTACAACCTCTCAGTTCACAAACTCCTTGTACTCTGTTGATGAATCTTTGTTGTCTAACAGTGCAGATAGTCATAATTCTTCTGAAGAAGAATATAGTAATTTTCAGTCTGGAAATATGTCATTTTATGACCACTTTCCGAAAAAACATGATGAATTGTTTAGGAATGATGCTTCCATTGATGAGAAGCCCCTTGAAATTTCTTTTCAGAGAACTAAGGTAATTCTTTCTTTCTTTCTTTCTTTGTATGTAGCTTGTAATTTTTTATTCCATCTGAATTATATATGAAATGATATATCATGTTGTGCTTTAACTTGTTTAATTATATTAGAGATTAGTGCTGTCCAAAAAAAGTTACAGTATTCTTTGTGCATTCATAACCTGTTTAATTATAGTATTAGATAATAGATATTAGTCCTTTTAAGTATTTCATGGATTTTTTTTTTTAATGGTTTCATCTATTTGTGAATGGTGAATTGTGTTGGGCTGATTGTGATATGGGGAATAAGAAGGTGATATAATATGAGATTGAAATTAATGTTTTGATTTTTCTTCCATATATGCAATGAATCTAATTATGAAATTTAGGGTTTTGTGAAAGGGACAATAATGAATTGCGGAGGGTAAGGGTCCAATCTAACGTGTTTTTCTAATAAAATTGATTAAAGTGGTCACATAAACATTCTTTTAACGGAGTTGGATGGAAAACTAAAAAGAAAATCAATGGTGTCCAAGTTATGGGACTTATAGTTGGGAATTATTTTTTAAAGGACTACTAAAGCGCTATTACGTCGATTAAAGGGCCGCACGATGTATTTTGCCTAAAGTCACGCATGTGCAAAAACAAGAGTAGTTTACTAGTAATCTATTTATTCGGGTTAAGTGCTAAGTGTTAACCTAACAATTTCTCCAACTCGTCAATTAGGATATTGTAATCTATGCCTTTTTATTTGTTTATTTTCCTTTCTAATAAGCTATAATCCATGACTTACTATAGTCAGGCTCATCTACAAAGTCACAAAAGCAGACTCCTCAACTTTATGGAATGTGTGCCACTTCTAACAATTCTGCTTCTAGGAAAGCTCCAACATGTAAAAGAAGAGTAAGATGGACAGAGGATCTGCATGAATCATTCATGATAATCGTTGATCACCTTGGTGGTCCAGAAAGTAAGTAATTAACTAAGTAATAGCATTAGTTACACATAAGCAAATTCAATTAATTCACTGATTATAATTGCAGAGGCAAAGCCTAAGGCTATACTAGATATGATGAAATCAAATTTGCTATCCATTTCTCATGTTAAAAGCCATTTGCAGGTAAAACTATTTCCATTCAACAATTTCAATAATTTGTAAATGTTGTTCTGTGAAGCCTCATTTGCCGGTAATTGACTCTAACATTGTTCTTATATGATTGCCGTGCAGAAATGTCGATCTACAATACGCATGCATAAAGCTTTGCAGGGTAAATTAATTTTTTCATTGCATTCTATTACAACACTGCTTACTTATTAAGGAGGCTATGCGTATATTGTGACACGTTTATCTTTATCTTTCAGAAAGACCTGAGGAAGGACATAGAACAGATAGAGTCGCAGATCTTCAACTCAAAATGTAAATATTTTAGTGTTACGAATGATACTTATTGATTCTTTATGTAGTAATTGCAAGTTTTTTTTTTTTTCTCTTCTGATTACTGGTTTTTTAAATTTATACACTTTGTTTTCCTATTTCCTAGCAGCCTTAAGCAAATTGAGGAATCACGGCAGTTGCATCTAGAGGTTCGAAAAAGTATTTCGCAACAGTTAGAGGTAATATACAATTATGCTTTGATGGAAACAAATTATACAGAATAAGTTATTATTGTTGAGATCATGAATCAGTCCAAAGTCGTATATCCTTACAACCTTGTTTTTATTTGTTATTTTTTCTTCGCCTTTAGACGCAAAGAAAGTTGCAAATACTAATTGAACAACATGACAAGAAGCTCAAACTAATGCAAAAAGAAAGAACCAACCAAAGAAAATTTTGGACACAACGAGAAAGGACAGTTCCCAAATAA
Protein sequence

>MS.gene017973.t1

MYQHWSKMYGTQWESYIGINNLVKVVGSDQIVGSEHMSYEPIKSPCNNIVTTNFQGQTSHDGFGAVSVAKIKSNVSFQGEEYYDEDEIEVSGWCFDQFPKITDPPMLNCQAYGGENFTTSQFTNSLYSVDESLLSNSADSHNSSEEEYSNFQSGNMSFYDHFPKKHDELFRNDASIDEKPLEISFQRTKSGSSTKSQKQTPQLYGMCATSNNSASRKAPTCKRRVRWTEDLHESFMIIVDHLGGPEKAKPKAILDMMKSNLLSISHVKSHLQKCRSTIRMHKALQERPEEGHRTDRVADLQLKILKQIEESRQLHLEVRKSISQQLETQRKLQILIEQHDKKLKLMQKERTNQRKFWTQRERTVPK