AlfalfaGEDB | MS.gene018017

M. sativa cultivar XinJiangDaYe / MS.gene018017

KEGG: K17442
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018017.t1	AES81523.1	70.4	179	24	3	9	186	11	161	1.50E-59	239.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018017.t1	G7KWB3	70.4	179	24	3	9	186	11	161	1.1e-59	239.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene018017.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018017.t1	MTR_7g093700	68.254	189	29	4	1	186	1	161	1.76e-71	213
MS.gene018017.t1	MTR_7g093670	91.463	82	6	1	106	186	1	82	4.88e-47	149
MS.gene018017.t1	MTR_7g093690	56.061	132	41	5	70	186	7	136	2.90e-31	110
MS.gene018017.t1	MTR_3g011210	40.769	130	49	4	71	175	7	133	1.12e-17	75.5
MS.gene018017.t1	MTR_7g093660	54.545	77	21	2	123	186	1	76	1.01e-12	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCACAAGATCTTTCT+TGG	0.245892	7.1:-13950668	MS.gene018017:CDS
AACAACATGGTGTGTGATGA+AGG	0.556950	7.1:+13950504	None:intergenic
AACATGGTGTGTGATGAAGG+TGG	0.787924	7.1:+13950507	None:intergenic
AACCTCTGGTATAGGCCTCA+TGG	0.524083	7.1:+13950440	None:intergenic
AAGAATTACCAGCGGTCTGG+TGG	0.491691	7.1:-13950308	MS.gene018017:CDS
AATAATATTGATGGATCTTT+GGG	0.232329	7.1:-13950387	MS.gene018017:CDS
ACAATTGGAACCTCTGGTAT+AGG	0.433089	7.1:+13950432	None:intergenic
ACACAATTTGCAACATAAAT+CGG	0.316739	7.1:-13950632	MS.gene018017:CDS
ACCACCTTCATCCATCCATG+AGG	0.719012	7.1:-13950455	MS.gene018017:CDS
ACCATGTTGTTTCCTATGCA+TGG	0.506943	7.1:-13950492	MS.gene018017:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACAATTTGCAACATAAATC+GGG	-	chr7.1:13950439-13950458	MS.gene018017:CDS	30.0%
TGTAAATCTTGTGATGTTGT+TGG	+	chr7.1:13950506-13950525	None:intergenic	30.0%
AAACTGCACAAGATCTTTCT+TGG	-	chr7.1:13950402-13950421	MS.gene018017:CDS	35.0%
AGATCTTCTTTGTACCACAT+TGG	-	chr7.1:13950527-13950546	MS.gene018017:CDS	35.0%
GTTAGAGTAAGAACAAGAGT+AGG	+	chr7.1:13950341-13950360	None:intergenic	35.0%
GTTGGTATGAATGTTTGTGA+TGG	+	chr7.1:13950488-13950507	None:intergenic	35.0%
TAATTACCACTTCCATGCAT+AGG	+	chr7.1:13950593-13950612	None:intergenic	35.0%
TCAATTGGAGCAGAATCAAT+CGG	+	chr7.1:13950743-13950762	None:intergenic	35.0%
TCCAATTGAAGAATTACCAG+CGG	-	chr7.1:13950754-13950773	MS.gene018017:CDS	35.0%
TGCAAATTGTGTATGAGCTT+TGG	+	chr7.1:13950430-13950449	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	13950266	13950826	13950266	ID=MS.gene018017
chr7.1	mRNA	13950266	13950826	13950266	ID=MS.gene018017.t1;Parent=MS.gene018017
chr7.1	exon	13950266	13950826	13950266	ID=MS.gene018017.t1.exon1;Parent=MS.gene018017.t1
chr7.1	CDS	13950266	13950826	13950266	ID=cds.MS.gene018017.t1;Parent=MS.gene018017.t1

Gene Sequence

>MS.gene018017

ATGTTGTTAGATGTTCAACTCTTATCTTATGATGAGAGCAGTACTGTCAGCAGCAACAATACTAACGTTGCTCCTACTCTTGTTCTTACTCTAACTCCAATCGAATTTCGATGCAACCATTGCCATAACACCTTCAAAACTGCACAAGATCTTTCTTGGCACCAAAGCTCATACACAATTTGCAACATAAATCGGGCTTTATTGAGACATAACAACACACCATCACAAACATTCATACCAACAACATCACAAGATTTACAAAGATCTTCTTTGTACCACATTGGACCACCATCTCCACCACCTTCATCACACACCATGTTGTTTCCTATGCATGGAAGTGGTAATTATGACCACCTTCATCCATCCATGAGGCCTATACCAGAGGTTCCAATTGTCTCTCGTACTCGTCATGATTACAATAATATTGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCGACAAGCCGATTGATTCTGCTCCAATTGAAGAATTACCAGCGGTCTGGTGGGATGGAAACAACAATGACATCGACCTTGATTTGAAGCTTTAG

Protein sequence

>MS.gene018017.t1

MLLDVQLLSYDESSTVSSNNTNVAPTLVLTLTPIEFRCNHCHNTFKTAQDLSWHQSSYTICNINRALLRHNNTPSQTFIPTTSQDLQRSSLYHIGPPSPPPSSHTMLFPMHGSGNYDHLHPSMRPIPEVPIVSRTRHDYNNIDGSLGRTMDLISLIDKPIDSAPIEELPAVWWDGNNNDIDLDLKL