AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018154

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018154.t1 MTR_7g075230 97.436 195 4 1 1 195 1 194 6.52e-141 391
MS.gene018154.t1 MTR_8g036105 62.051 195 62 6 4 194 10 196 9.92e-68 206
MS.gene018154.t1 MTR_8g036085 72.642 106 27 2 11 116 22 125 4.96e-52 167
MS.gene018154.t1 MTR_7g074990 67.619 105 32 2 12 116 20 122 3.99e-46 152
MS.gene018154.t1 MTR_7g096610 65.546 119 36 4 10 125 6 122 1.78e-45 150
MS.gene018154.t1 MTR_1g070205 54.225 142 60 4 12 151 12 150 7.04e-45 149
MS.gene018154.t1 MTR_7g096530 65.487 113 37 2 4 116 6 116 2.68e-44 147
MS.gene018154.t1 MTR_1g070220 58.065 124 50 2 10 133 13 134 1.05e-41 140
MS.gene018154.t1 MTR_6g027710 62.385 109 37 3 12 120 40 144 1.06e-39 135
MS.gene018154.t1 MTR_5g080470 61.616 99 36 2 10 108 5 101 2.73e-39 133
MS.gene018154.t1 MTR_5g083230 46.386 166 76 5 9 164 3 165 3.94e-37 127
MS.gene018154.t1 MTR_3g071590 42.857 161 78 3 6 155 2 159 3.92e-35 121
MS.gene018154.t1 MTR_7g033800 53.043 115 51 2 12 126 11 122 8.52e-33 116
MS.gene018154.t1 MTR_2g068760 52.632 114 45 3 8 115 3 113 1.77e-32 114
MS.gene018154.t1 MTR_3g031660 51.402 107 49 2 9 115 4 107 4.47e-32 114
MS.gene018154.t1 MTR_4g105170 58.586 99 38 2 10 108 9 104 1.32e-31 113
MS.gene018154.t1 MTR_3g077240 55.660 106 44 2 10 115 8 110 3.31e-31 112
MS.gene018154.t1 MTR_6g005070 53.704 108 47 2 12 119 9 113 3.99e-31 110
MS.gene018154.t1 MTR_4g083680 54.902 102 43 2 12 113 15 113 5.65e-31 111
MS.gene018154.t1 MTR_4g060950 42.958 142 67 3 11 141 23 161 7.60e-31 111
MS.gene018154.t1 MTR_6g027700 50.893 112 53 2 8 119 3 112 1.36e-30 111
MS.gene018154.t1 MTR_5g083010 51.923 104 47 2 13 116 12 112 2.35e-30 110
MS.gene018154.t1 MTR_5g083960 43.038 158 78 5 12 162 39 191 3.84e-29 107
MS.gene018154.t1 MTR_2g093310 49.524 105 50 2 11 115 32 133 7.76e-29 106
MS.gene018154.t1 MTR_3g452660 52.778 108 48 2 12 119 7 111 1.63e-28 108
MS.gene018154.t1 MTR_6g005080 51.923 104 47 2 12 115 10 110 2.57e-28 103
MS.gene018154.t1 MTR_3g073690 50.926 108 50 2 9 116 6 110 6.27e-28 104
MS.gene018154.t1 MTR_3g071420 50.000 100 47 2 13 112 15 111 1.88e-27 102
MS.gene018154.t1 MTR_5g017950 52.381 105 47 2 12 116 8 109 3.50e-27 105
MS.gene018154.t1 MTR_1g095850 50.485 103 48 2 13 115 73 172 1.07e-26 102
MS.gene018154.t1 MTR_3g094690 50.962 104 48 2 12 115 47 147 1.36e-26 102
MS.gene018154.t1 MTR_3g094690 50.962 104 47 3 12 115 47 146 6.75e-25 97.4
MS.gene018154.t1 MTR_5g075020 53.846 104 45 2 12 115 43 143 7.27e-23 92.0
MS.gene018154.t1 MTR_5g075020 53.846 104 45 2 12 115 47 147 1.11e-22 91.7
MS.gene018154.t1 MTR_5g093010 42.453 106 58 2 11 116 4 106 2.15e-22 88.6
MS.gene018154.t1 MTR_8g040900 49.550 111 53 2 12 122 7 114 1.33e-21 88.6
MS.gene018154.t1 MTR_7g028905 38.462 104 61 2 13 116 6 106 4.00e-20 81.6
MS.gene018154.t1 MTR_8g079660 39.048 105 61 2 12 116 8 109 1.37e-17 78.6
MS.gene018154.t1 MTR_8g079620 40.952 105 59 2 12 116 8 109 1.73e-16 75.1
MS.gene018154.t1 MTR_2g100020 37.143 105 63 2 13 117 20 121 7.57e-16 73.9
MS.gene018154.t1 MTR_8g017090 37.736 106 63 2 13 118 13 115 2.81e-15 72.8
MS.gene018154.t1 MTR_6g011250 39.623 106 60 3 13 117 10 112 3.60e-15 70.5
MS.gene018154.t1 MTR_8g079580 36.538 104 64 1 12 115 8 109 9.02e-15 70.5
MS.gene018154.t1 MTR_4g107450 37.143 105 63 2 13 117 11 112 3.69e-14 69.7
MS.gene018154.t1 MTR_6g011230 33.929 112 70 3 1 112 1 108 2.34e-13 66.2
MS.gene018154.t1 MTR_6g011200 34.906 106 58 5 13 110 10 112 2.76e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018154.t1 AT2G45410 71.429 119 31 3 15 132 19 135 4.96e-53 168
MS.gene018154.t1 AT4G00210 63.971 136 43 3 10 141 9 142 2.31e-52 167
MS.gene018154.t1 AT2G45420 75.238 105 24 2 15 119 40 142 1.49e-48 159
MS.gene018154.t1 AT4G00220 69.524 105 30 2 15 119 20 122 1.04e-45 150
MS.gene018154.t1 AT3G03760 68.468 111 32 3 12 122 51 158 5.58e-45 150
MS.gene018154.t1 AT3G58190 57.851 121 49 2 12 132 11 129 7.65e-45 148
MS.gene018154.t1 AT2G42430 56.934 137 48 4 10 137 13 147 4.29e-44 147
MS.gene018154.t1 AT2G42440 55.200 125 49 3 10 129 5 127 1.08e-42 143
MS.gene018154.t1 AT5G06080 48.026 152 64 4 10 151 5 151 1.04e-40 136
MS.gene018154.t1 AT2G31310 58.879 107 42 2 10 116 5 109 1.64e-39 134
MS.gene018154.t1 AT2G30130 50.407 123 57 3 6 128 2 120 1.28e-33 119
MS.gene018154.t1 AT5G63090 57.143 105 42 2 12 116 11 112 2.15e-31 112
MS.gene018154.t1 AT5G63090 57.143 105 42 2 12 116 11 112 2.15e-31 112
MS.gene018154.t1 AT5G63090 57.143 105 42 2 12 116 11 112 2.15e-31 112
MS.gene018154.t1 AT5G63090 57.143 105 42 2 12 116 11 112 2.15e-31 112
MS.gene018154.t1 AT1G16530 49.153 118 55 2 11 125 13 128 2.53e-31 112
MS.gene018154.t1 AT3G27650 53.846 104 45 2 12 115 39 139 3.05e-30 109
MS.gene018154.t1 AT1G07900 40.741 162 82 5 11 164 32 187 1.61e-29 108
MS.gene018154.t1 AT3G11090 41.290 155 83 5 13 163 12 162 1.93e-29 107
MS.gene018154.t1 AT2G28500 50.962 104 48 2 12 115 55 155 9.16e-29 107
MS.gene018154.t1 AT5G66870 49.635 137 54 5 12 136 7 140 7.02e-28 107
MS.gene018154.t1 AT1G31320 53.333 90 39 2 12 101 13 99 1.00e-27 103
MS.gene018154.t1 AT3G26660 44.762 105 55 2 13 117 6 107 2.61e-27 100
MS.gene018154.t1 AT3G26620 44.762 105 55 2 13 117 6 107 4.78e-27 99.8
MS.gene018154.t1 AT2G23660 47.115 104 52 2 12 115 5 105 4.46e-25 99.4
MS.gene018154.t1 AT2G23660 47.115 104 52 2 12 115 5 105 4.46e-25 99.4
MS.gene018154.t1 AT2G23660 47.115 104 52 2 12 115 5 105 4.46e-25 99.4
MS.gene018154.t1 AT2G30340 48.077 104 51 2 12 115 52 152 1.05e-24 97.8
MS.gene018154.t1 AT2G30340 48.077 104 51 2 12 115 53 153 1.25e-24 97.4
MS.gene018154.t1 AT3G50510 43.636 110 59 2 7 116 7 113 4.76e-23 91.7
MS.gene018154.t1 AT3G50510 43.636 110 59 2 7 116 7 113 4.76e-23 91.7
MS.gene018154.t1 AT2G40470 52.885 104 46 2 12 115 20 120 5.99e-22 89.0
MS.gene018154.t1 AT2G40470 52.885 104 46 2 12 115 45 145 6.17e-22 89.4
MS.gene018154.t1 AT1G65620 52.381 105 47 2 12 116 9 110 7.81e-22 88.6
MS.gene018154.t1 AT1G65620 52.381 105 47 2 12 116 9 110 7.81e-22 88.6
MS.gene018154.t1 AT1G65620 52.381 105 47 2 12 116 9 110 7.81e-22 88.6
MS.gene018154.t1 AT1G65620 52.381 105 47 2 12 116 9 110 7.81e-22 88.6
MS.gene018154.t1 AT1G65620 52.381 105 47 2 12 116 9 110 7.81e-22 88.6
MS.gene018154.t1 AT1G72980 35.772 123 74 3 9 129 8 127 1.81e-15 72.0
MS.gene018154.t1 AT5G35900 33.043 115 74 2 13 127 6 117 4.05e-15 70.9
MS.gene018154.t1 AT3G13850 33.898 118 75 2 13 130 37 151 6.36e-15 71.2
MS.gene018154.t1 AT3G47870 29.907 107 72 2 11 117 35 138 2.52e-12 64.7
MS.gene018154.t1 AT1G06280 41.558 77 42 2 13 89 25 98 2.61e-12 63.2

Find 37 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAGAGAGAGATGGATTT+GGG 0.204949 7.1:-28044970 None:intergenic
AGGGCTACTGACCCTGTTTA+TGG 0.239262 7.1:-28044715 MS.gene018154:CDS
TTTAGAGAGAGAGATGGATT+TGG 0.290229 7.1:-28044971 None:intergenic
AAGGCAAAGCTTGGAATTCC+TGG 0.322902 7.1:+28041955 None:intergenic
GGGTGTGGGGATGACGGTGG+TGG 0.353668 7.1:-28044949 MS.gene018154:CDS
AGAGAGATGGATTTGGGGTG+TGG 0.373011 7.1:-28044964 None:intergenic
GTCATGAAGTTGTTGATTAT+AGG 0.378812 7.1:+28041977 None:intergenic
TGACCTGATGACTCAAAATA+TGG 0.381006 7.1:+28044865 None:intergenic
CTTTGAGGCTGTTGAAATTG+AGG 0.406522 7.1:+28042146 None:intergenic
TGAGCAACACAACCATAAAC+AGG 0.407283 7.1:+28044703 None:intergenic
GAGAGATGGATTTGGGGTGT+GGG 0.427932 7.1:-28044963 None:intergenic
GCTGCAGTTCATAAGGTGTT+TGG 0.429613 7.1:-28044826 MS.gene018154:CDS
TTGGGGTGTGGGGATGACGG+TGG 0.437721 7.1:-28044952 MS.gene018154:CDS
CCTCTTTGCTCTTCAACAAC+AGG 0.440953 7.1:-28044680 MS.gene018154:intron
GCATCAAGACGCTTATGAAC+TGG 0.441293 7.1:+28044769 None:intergenic
GATTTGGGGTGTGGGGATGA+CGG 0.456260 7.1:-28044955 MS.gene018154:CDS
AAAATTCTCAAGGCAAAGCT+TGG 0.480367 7.1:+28041946 None:intergenic
TGATTATAGGAATAGTATGA+TGG 0.495256 7.1:+28041990 None:intergenic
TCTGCTATGAGGCTCTTGCT+AGG 0.495453 7.1:-28044735 MS.gene018154:CDS
CTGCTATGAGGCTCTTGCTA+GGG 0.502068 7.1:-28044734 MS.gene018154:CDS
GCGATTCAATATTGAAAGAC+GGG 0.503238 7.1:+28042181 None:intergenic
AGTAAGGATGAATGCAAAGT+TGG 0.505000 7.1:+28042110 None:intergenic
TCTTACATGTCCATGCACTT+TGG 0.510678 7.1:-28042059 MS.gene018154:CDS
GGTGTGGGGATGACGGTGGT+GGG 0.515639 7.1:-28044948 MS.gene018154:CDS
TGAAAGACGGGCTTGTACAT+AGG 0.516839 7.1:+28042193 None:intergenic
TGTTGTTACTCTCTGCTATG+AGG 0.534536 7.1:-28044746 MS.gene018154:CDS
TAGAGAGAGAGATGGATTTG+GGG 0.538982 7.1:-28044969 None:intergenic
AGAGATGGATTTGGGGTGTG+GGG 0.541784 7.1:-28044962 None:intergenic
GGTGATATTGAAGAGCTTTG+AGG 0.552521 7.1:+28042131 None:intergenic
TTGAGAAGAAAGTGTGTGAA+AGG 0.553888 7.1:-28044904 MS.gene018154:CDS
TGATGACAAATGATGAAGTA+AGG 0.555832 7.1:+28042094 None:intergenic
GATGACGGTGGTGGGCCTTG+TGG 0.575954 7.1:-28044940 MS.gene018154:CDS
TGCGATTCAATATTGAAAGA+CGG 0.576843 7.1:+28042180 None:intergenic
AAGAGGATGACCAAAGTGCA+TGG 0.603188 7.1:+28042049 None:intergenic
TAATCAACAACTTCATGACC+AGG 0.619495 7.1:-28041973 MS.gene018154:CDS
CCTGTTGTTGAAGAGCAAAG+AGG 0.642330 7.1:+28044680 None:intergenic
GAGCAACACAACCATAAACA+GGG 0.707824 7.1:+28044704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGACATATATAAAT+AGG + chr7.1:28042605-28042624 None:intergenic 10.0%
!! ATAAAAATAGGAATTATAAT+AGG + chr7.1:28043454-28043473 None:intergenic 10.0%
!! ATATAATTGTATTTAAACTA+TGG + chr7.1:28044657-28044676 None:intergenic 10.0%
!! TATAATTGTATTTAAACTAT+GGG + chr7.1:28044656-28044675 None:intergenic 10.0%
!!! AAATAGGATTTATATTATTT+TGG + chr7.1:28042589-28042608 None:intergenic 10.0%
!!! ATTTTATCAATAATATTCTT+TGG - chr7.1:28042635-28042654 MS.gene018154:intron 10.0%
!!! ATTTTGATATCAATAATTTA+GGG + chr7.1:28044261-28044280 None:intergenic 10.0%
!!! TATTATAATTCCTATTTTTA+TGG - chr7.1:28043453-28043472 MS.gene018154:intron 10.0%
!!! TATTATTTTGGAAAATAAAT+AGG + chr7.1:28042577-28042596 None:intergenic 10.0%
!!! TATTTTGATATCAATAATTT+AGG + chr7.1:28044262-28044281 None:intergenic 10.0%
!! ATAGATAACTAATAGTTTAA+GGG - chr7.1:28044453-28044472 MS.gene018154:intron 15.0%
!! ATTCAAGAAAAACTTATAAT+AGG - chr7.1:28042454-28042473 MS.gene018154:intron 15.0%
!! CAGAAAAAAAGAAAAAAAAA+AGG - chr7.1:28042766-28042785 MS.gene018154:intron 15.0%
!! TAAATAGGATTTATATTGTT+TGG + chr7.1:28042562-28042581 None:intergenic 15.0%
!! TAAATGAATAAATGATCAAT+AGG + chr7.1:28044415-28044434 None:intergenic 15.0%
!! TAATTCGTATATATATAACT+TGG - chr7.1:28042334-28042353 MS.gene018154:intron 15.0%
!! TATAGATAACTAATAGTTTA+AGG - chr7.1:28044452-28044471 MS.gene018154:intron 15.0%
!! TATATATATACGAATTAGTT+AGG + chr7.1:28042331-28042350 None:intergenic 15.0%
!! TATTCATTTATATGGTATAT+GGG - chr7.1:28044425-28044444 MS.gene018154:intron 15.0%
!! TGATCATTTATTCATTTATA+TGG - chr7.1:28044417-28044436 MS.gene018154:intron 15.0%
!! TTATATACTTGATTAATTAC+AGG - chr7.1:28044671-28044690 MS.gene018154:intron 15.0%
!! TTATTCATTTATATGGTATA+TGG - chr7.1:28044424-28044443 MS.gene018154:intron 15.0%
!!! ATGCAATGTAAAATAAATTT+TGG + chr7.1:28042997-28043016 None:intergenic 15.0%
!!! CTTTTTTTTTTCTTTTTTTC+TGG + chr7.1:28042768-28042787 None:intergenic 15.0%
!! AAAAAATTTCCCAAAGAAAA+GGG - chr7.1:28043381-28043400 MS.gene018154:intron 20.0%
!! AAATGTTAATAGTACCTTTA+GGG - chr7.1:28043655-28043674 MS.gene018154:intron 20.0%
!! AATAAATGATCAATAGGTTA+GGG + chr7.1:28044409-28044428 None:intergenic 20.0%
!! AATACATTACACAACAATAT+GGG - chr7.1:28044325-28044344 MS.gene018154:intron 20.0%
!! AGAAGAATGGTTTAATAAAT+TGG - chr7.1:28042659-28042678 MS.gene018154:intron 20.0%
!! ATGACTTACATAATGTTATT+TGG + chr7.1:28043789-28043808 None:intergenic 20.0%
!! TAAGTCACACAAAAAAAAAA+GGG - chr7.1:28043632-28043651 MS.gene018154:intron 20.0%
!! TAATACATTACACAACAATA+TGG - chr7.1:28044324-28044343 MS.gene018154:intron 20.0%
!! TGTATAAATACAACTATGTT+AGG + chr7.1:28044010-28044029 None:intergenic 20.0%
!! TTTCTAATTCACAAAAGATA+AGG + chr7.1:28044080-28044099 None:intergenic 20.0%
!!! AAGAAAATGTTTCCATTTTT+GGG + chr7.1:28044515-28044534 None:intergenic 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG - chr7.1:28043335-28043354 MS.gene018154:intron 20.0%
!!! TAAGAAAATGTTTCCATTTT+TGG + chr7.1:28044516-28044535 None:intergenic 20.0%
!!! TATATTGCTTTAATTTGTTC+AGG + chr7.1:28042873-28042892 None:intergenic 20.0%
!!! TCAAAGGCATAATATAATTA+AGG - chr7.1:28043145-28043164 MS.gene018154:intron 20.0%
!!! TGACTTACATAATGTTATTT+GGG + chr7.1:28043788-28043807 None:intergenic 20.0%
! AAGTTATATTTGTAGATTCC+TGG - chr7.1:28043272-28043291 MS.gene018154:intron 25.0%
! AATATTCTTTGGTAGAAGAA+TGG - chr7.1:28042646-28042665 MS.gene018154:intron 25.0%
! AATTTGTACATTCAAAGCAT+TGG - chr7.1:28043715-28043734 MS.gene018154:intron 25.0%
! ACAAAAGATAAGGTAACAAA+CGG + chr7.1:28044070-28044089 None:intergenic 25.0%
! AGAAGAAAGATCATATTCAT+AGG - chr7.1:28042811-28042830 MS.gene018154:intron 25.0%
! AGTTATATTTGTAGATTCCT+GGG - chr7.1:28043273-28043292 MS.gene018154:intron 25.0%
! ATACATTACACAACAATATG+GGG - chr7.1:28044326-28044345 MS.gene018154:intron 25.0%
! ATTATTCCTAGGAATGAATT+TGG - chr7.1:28043560-28043579 MS.gene018154:intron 25.0%
! ATTTCACTTGATTAAAGAGT+GGG + chr7.1:28043896-28043915 None:intergenic 25.0%
! GAAAAAATTTCCCAAAGAAA+AGG - chr7.1:28043380-28043399 MS.gene018154:intron 25.0%
! GAAATGTTAATAGTACCTTT+AGG - chr7.1:28043654-28043673 MS.gene018154:intron 25.0%
! GAAGAAAGATCATATTCATA+GGG - chr7.1:28042812-28042831 MS.gene018154:intron 25.0%
! GAATAAATGATCAATAGGTT+AGG + chr7.1:28044410-28044429 None:intergenic 25.0%
! GTAAGTCACACAAAAAAAAA+AGG - chr7.1:28043631-28043650 MS.gene018154:intron 25.0%
! TCTAAAGAAAATTACCAGTT+AGG + chr7.1:28042735-28042754 None:intergenic 25.0%
! TGATTATAGGAATAGTATGA+TGG + chr7.1:28044924-28044943 None:intergenic 25.0%
! TTGCTTAATATGTGTCATAA+GGG + chr7.1:28044492-28044511 None:intergenic 25.0%
! TTTAACGCTATAATATTCCT+GGG + chr7.1:28043481-28043500 None:intergenic 25.0%
!! AAGATGAGAATTTTATTCCA+AGG + chr7.1:28043525-28043544 None:intergenic 25.0%
!! AGTGTTTAGGATAATAATGA+TGG + chr7.1:28044364-28044383 None:intergenic 25.0%
!! GTTTACTAAATTTTATTCCC+GGG - chr7.1:28043336-28043355 MS.gene018154:intron 25.0%
!!! CATCTTTTTTCTAAATACCT+TGG - chr7.1:28043505-28043524 MS.gene018154:intron 25.0%
!!! TAGTATGATGGATTTTCAAA+AGG + chr7.1:28044912-28044931 None:intergenic 25.0%
!!! TGATATTGATCATTTTGAAG+AGG + chr7.1:28044882-28044901 None:intergenic 25.0%
!!! TGCTTTTGATACTTTAAAGA+TGG - chr7.1:28043921-28043940 MS.gene018154:intron 25.0%
AATAAAGTTCACATGGAGAT+GGG - chr7.1:28043408-28043427 MS.gene018154:intron 30.0%
AATGTATATTCTCAAGGTGT+TGG - chr7.1:28042490-28042509 MS.gene018154:intron 30.0%
ACTTGATTAATTACAGGTTG+TGG - chr7.1:28044677-28044696 MS.gene018154:intron 30.0%
AGTTTACCAAATTCATTCCT+AGG + chr7.1:28043569-28043588 None:intergenic 30.0%
ATGCAAATAAGTATCCTAAC+TGG - chr7.1:28042718-28042737 MS.gene018154:intron 30.0%
ATGTTTGATCGTGCATTTAA+TGG + chr7.1:28043172-28043191 None:intergenic 30.0%
ATTCTCATCTTTATGTTCCA+AGG - chr7.1:28043534-28043553 MS.gene018154:intron 30.0%
CAAAAGATAAGGTAACAAAC+GGG + chr7.1:28044069-28044088 None:intergenic 30.0%
CATATTAAGCAACCCAAAAA+TGG - chr7.1:28044500-28044519 MS.gene018154:intron 30.0%
CATCATATTCCAATATTGTG+TGG + chr7.1:28043826-28043845 None:intergenic 30.0%
CCACTAAAAGGAAACTAATA+AGG + chr7.1:28042529-28042548 None:intergenic 30.0%
GATTTCACTTGATTAAAGAG+TGG + chr7.1:28043897-28043916 None:intergenic 30.0%
GGCAGAAAAAATGAAAACTA+AGG + chr7.1:28042310-28042329 None:intergenic 30.0%
GTTGCTTAATATGTGTCATA+AGG + chr7.1:28044493-28044512 None:intergenic 30.0%
GTTTAACGCTATAATATTCC+TGG + chr7.1:28043482-28043501 None:intergenic 30.0%
TGATGACAAATGATGAAGTA+AGG + chr7.1:28044820-28044839 None:intergenic 30.0%
TGCGATTCAATATTGAAAGA+CGG + chr7.1:28044734-28044753 None:intergenic 30.0%
TGTATTAGCGATGACATTAA+AGG + chr7.1:28044311-28044330 None:intergenic 30.0%
TGTATTGAGTATGTTCTGTT+GGG - chr7.1:28043022-28043041 MS.gene018154:intron 30.0%
TTCCAAGGAATATTATTCCT+AGG - chr7.1:28043549-28043568 MS.gene018154:intron 30.0%
TTCCTAGGAATAATATTCCT+TGG + chr7.1:28043554-28043573 None:intergenic 30.0%
TTGTATTGAGTATGTTCTGT+TGG - chr7.1:28043021-28043040 MS.gene018154:intron 30.0%
! AATATTGGAATATGATGACG+AGG - chr7.1:28043829-28043848 MS.gene018154:intron 30.0%
! ATATTGGAATATGATGACGA+GGG - chr7.1:28043830-28043849 MS.gene018154:intron 30.0%
! CAGCTTTAGTATTAGTGTTT+AGG + chr7.1:28044377-28044396 None:intergenic 30.0%
! GTCATGAAGTTGTTGATTAT+AGG + chr7.1:28044937-28044956 None:intergenic 30.0%
!! AATCATTAACTTGTGTCTTG+AGG - chr7.1:28044614-28044633 MS.gene018154:intron 30.0%
!! ATCATTAACTTGTGTCTTGA+GGG - chr7.1:28044615-28044634 MS.gene018154:intron 30.0%
!! CCTTATTAGTTTCCTTTTAG+TGG - chr7.1:28042526-28042545 MS.gene018154:intron 30.0%
!! TAACTTGGTGCTTTAAAAAC+TGG - chr7.1:28042349-28042368 MS.gene018154:intron 30.0%
!!! TGTGTACTTTTCTAAAGTAG+TGG - chr7.1:28042929-28042948 MS.gene018154:intron 30.0%
AAATTTCCCAAAGAAAAGGG+TGG - chr7.1:28043384-28043403 MS.gene018154:intron 35.0%
AAGTTTCATGGTAAGTCTAG+TGG + chr7.1:28043202-28043221 None:intergenic 35.0%
AATTTCCCAAAGAAAAGGGT+GGG - chr7.1:28043385-28043404 MS.gene018154:intron 35.0%
AGTAAGGATGAATGCAAAGT+TGG + chr7.1:28044804-28044823 None:intergenic 35.0%
ATGTGAGGAACTAAGTTTCA+TGG + chr7.1:28043214-28043233 None:intergenic 35.0%
ATTCCTGGGAATAAAACGAT+AGG - chr7.1:28043287-28043306 MS.gene018154:intron 35.0%
GAATAAAGTTCACATGGAGA+TGG - chr7.1:28043407-28043426 MS.gene018154:intron 35.0%
GCAGCTAATGTATATTCTCA+AGG - chr7.1:28042484-28042503 MS.gene018154:intron 35.0%
GCGATTCAATATTGAAAGAC+GGG + chr7.1:28044733-28044752 None:intergenic 35.0%
GTAATCATCACATGAATGTG+AGG + chr7.1:28043229-28043248 None:intergenic 35.0%
TAATCAACAACTTCATGACC+AGG - chr7.1:28044938-28044957 MS.gene018154:CDS 35.0%
TCATGTCAACCACACAATAT+TGG - chr7.1:28043814-28043833 MS.gene018154:intron 35.0%
TGACCTGATGACTCAAAATA+TGG + chr7.1:28042049-28042068 None:intergenic 35.0%
TTCCTGGGAACCATAAAAAT+AGG + chr7.1:28043466-28043485 None:intergenic 35.0%
! AAGGTATAAGAGTATGAGAG+CGG - chr7.1:28042785-28042804 MS.gene018154:intron 35.0%
! TCATTTTGCTGCAGTTCATA+AGG - chr7.1:28042078-28042097 MS.gene018154:CDS 35.0%
! TTATTCCCACCCTTTTCTTT+GGG + chr7.1:28043393-28043412 None:intergenic 35.0%
! TTGAGAAGAAAGTGTGTGAA+AGG - chr7.1:28042007-28042026 MS.gene018154:CDS 35.0%
! TTTATTCCCACCCTTTTCTT+TGG + chr7.1:28043394-28043413 None:intergenic 35.0%
!! AGCTCTGGTTAGGTTTTATA+TGG - chr7.1:28043060-28043079 MS.gene018154:intron 35.0%
!! ATTCCTATCGTTTTATTCCC+AGG + chr7.1:28043293-28043312 None:intergenic 35.0%
!! GATGGATTTTCAAAAGGTGT+TGG + chr7.1:28044906-28044925 None:intergenic 35.0%
!! TATTTTGAGTCATCAGGTCA+AGG - chr7.1:28042049-28042068 MS.gene018154:CDS 35.0%
!!! GGGAAATTTTTTCTATTCCC+AGG + chr7.1:28043373-28043392 None:intergenic 35.0%
!!! TTCCTATTTTTATGGTTCCC+AGG - chr7.1:28043461-28043480 MS.gene018154:intron 35.0%
AAAAACTTGCAAGCACCACA+AGG + chr7.1:28041989-28042008 None:intergenic 40.0%
AAAACTGGTAACCACTAACC+TGG - chr7.1:28042364-28042383 MS.gene018154:intron 40.0%
ACATAACACTACCGTGAAAG+GGG + chr7.1:28043110-28043129 None:intergenic 40.0%
CACATAACACTACCGTGAAA+GGG + chr7.1:28043111-28043130 None:intergenic 40.0%
GAGCAACACAACCATAAACA+GGG + chr7.1:28042210-28042229 None:intergenic 40.0%
GGACAAAAGAGACCACTAAA+AGG + chr7.1:28042541-28042560 None:intergenic 40.0%
GGTGATATTGAAGAGCTTTG+AGG + chr7.1:28044783-28044802 None:intergenic 40.0%
TAAAGAGTGGGTGATAGAGT+GGG + chr7.1:28043884-28043903 None:intergenic 40.0%
TCAAGTGTCACAACAGTGTT+AGG - chr7.1:28044042-28044061 MS.gene018154:intron 40.0%
TCTTACATGTCCATGCACTT+TGG - chr7.1:28044852-28044871 MS.gene018154:CDS 40.0%
TGAGCAACACAACCATAAAC+AGG + chr7.1:28042211-28042230 None:intergenic 40.0%
TGCATGTCTTGTGATCTCAA+AGG - chr7.1:28043129-28043148 MS.gene018154:intron 40.0%
TGGAACGAATGCATACACTA+AGG - chr7.1:28043080-28043099 MS.gene018154:intron 40.0%
TGTTGTTACTCTCTGCTATG+AGG - chr7.1:28042165-28042184 MS.gene018154:CDS 40.0%
TTAAAGAGTGGGTGATAGAG+TGG + chr7.1:28043885-28043904 None:intergenic 40.0%
TTTGACACATTTGTCAGCTC+TGG - chr7.1:28043045-28043064 MS.gene018154:intron 40.0%
! AGGTATAAGAGTATGAGAGC+GGG - chr7.1:28042786-28042805 MS.gene018154:intron 40.0%
!! ATCCTTAAAGAGTGCCCTAA+AGG + chr7.1:28043672-28043691 None:intergenic 40.0%
!! CTTTGAGGCTGTTGAAATTG+AGG + chr7.1:28044768-28044787 None:intergenic 40.0%
!! GCACCATATTTTGAGTCATC+AGG - chr7.1:28042043-28042062 MS.gene018154:CDS 40.0%
!! TACCTTTAGGGCACTCTTTA+AGG - chr7.1:28043667-28043686 MS.gene018154:intron 40.0%
!! TTATGAACTTGTTACCCTCC+AGG + chr7.1:28042385-28042404 None:intergenic 40.0%
AAGAGGATGACCAAAGTGCA+TGG + chr7.1:28044865-28044884 None:intergenic 45.0%
AAGGCAAAGCTTGGAATTCC+TGG + chr7.1:28044959-28044978 None:intergenic 45.0%
CCTCTTTGCTCTTCAACAAC+AGG - chr7.1:28042231-28042250 MS.gene018154:intron 45.0%
CCTGTTGTTGAAGAGCAAAG+AGG + chr7.1:28042234-28042253 None:intergenic 45.0%
GCACATAACACTACCGTGAA+AGG + chr7.1:28043112-28043131 None:intergenic 45.0%
GCATCAAGACGCTTATGAAC+TGG + chr7.1:28042145-28042164 None:intergenic 45.0%
GGGTGGGAATAAAGTTCACA+TGG - chr7.1:28043401-28043420 MS.gene018154:intron 45.0%
TGGGTGATAGAGTGGGATAT+TGG + chr7.1:28043877-28043896 None:intergenic 45.0%
! CACATTTGTCAGCTCTGGTT+AGG - chr7.1:28043050-28043069 MS.gene018154:intron 45.0%
! GCTGCAGTTCATAAGGTGTT+TGG - chr7.1:28042085-28042104 MS.gene018154:CDS 45.0%
! GGTATAAGAGTATGAGAGCG+GGG - chr7.1:28042787-28042806 MS.gene018154:intron 45.0%
! TCCCAGGAACGTTTTATACC+CGG + chr7.1:28043357-28043376 None:intergenic 45.0%
! TGAAAGACGGGCTTGTACAT+AGG + chr7.1:28044721-28044740 None:intergenic 45.0%
! TGGAATATGATGACGAGGGT+TGG - chr7.1:28043834-28043853 MS.gene018154:intron 45.0%
ACTAAGGCATGCCCCTTTCA+CGG - chr7.1:28043096-28043115 MS.gene018154:intron 50.0%
ACTGGTAACCACTAACCTGG+AGG - chr7.1:28042367-28042386 MS.gene018154:intron 50.0%
AGGGCTACTGACCCTGTTTA+TGG - chr7.1:28042196-28042215 MS.gene018154:CDS 50.0%
CCCGGGTATAAAACGTTCCT+GGG - chr7.1:28043353-28043372 MS.gene018154:intron 50.0%
CTGCTATGAGGCTCTTGCTA+GGG - chr7.1:28042177-28042196 MS.gene018154:CDS 50.0%
CTGGTAACCACTAACCTGGA+GGG - chr7.1:28042368-28042387 MS.gene018154:intron 50.0%
CTTGTTACCCTCCAGGTTAG+TGG + chr7.1:28042378-28042397 None:intergenic 50.0%
TCCCGGGTATAAAACGTTCC+TGG - chr7.1:28043352-28043371 MS.gene018154:intron 50.0%
TCTGCTATGAGGCTCTTGCT+AGG - chr7.1:28042176-28042195 MS.gene018154:CDS 50.0%
! CCCAGGAACGTTTTATACCC+GGG + chr7.1:28043356-28043375 None:intergenic 50.0%
! GATTTGGGGTGTGGGGATGA+CGG - chr7.1:28041956-28041975 MS.gene018154:CDS 55.0%
! GGTGTGGGGATGACGGTGGT+GGG - chr7.1:28041963-28041982 MS.gene018154:CDS 65.0%
! TTGGGGTGTGGGGATGACGG+TGG - chr7.1:28041959-28041978 MS.gene018154:CDS 65.0%
!! GATGACGGTGGTGGGCCTTG+TGG - chr7.1:28041971-28041990 MS.gene018154:CDS 65.0%
! GGGTGTGGGGATGACGGTGG+TGG - chr7.1:28041962-28041981 MS.gene018154:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 28041953 28044980 28041953 ID=MS.gene018154
chr7.1 mRNA 28041953 28044980 28041953 ID=MS.gene018154.t1;Parent=MS.gene018154
chr7.1 exon 28044681 28044980 28044681 ID=MS.gene018154.t1.exon1;Parent=MS.gene018154.t1
chr7.1 CDS 28044681 28044980 28044681 ID=cds.MS.gene018154.t1;Parent=MS.gene018154.t1
chr7.1 exon 28041953 28042240 28041953 ID=MS.gene018154.t1.exon2;Parent=MS.gene018154.t1
chr7.1 CDS 28041953 28042240 28041953 ID=cds.MS.gene018154.t1;Parent=MS.gene018154.t1
Gene Sequence

>MS.gene018154

ATGGATTTGGGGTGTGGGGATGACGGTGGTGGGCCTTGTGGTGCTTGCAAGTTTTTGAGAAGAAAGTGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGTCAAGGAAGTGCTCATTTTGCTGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCTGCTAAGCTACTCACACGTATTCCAGTTCATAAGCGTCTTGATGCTGTTGTTACTCTCTGCTATGAGGCTCTTGCTAGGGCTACTGACCCTGTTTATGGTTGTGTTGCTCACCTCTTTGCTCTTCAACAACAGGTATACATACATATATCAGTTTTGTTTTGATACAGTGTATAACATTTGTTTCTTCCTTAGTTTTCATTTTTTCTGCCTAACTAATTCGTATATATATAACTTGGTGCTTTAAAAACTGGTAACCACTAACCTGGAGGGTAACAAGTTCATAAGACTTTATAGTAATAGATTAAAAAATATATATTAAAAATTACTTCACAAATTCAAGAAAAACTTATAATAGGTTCAAATGCAGCTAATGTATATTCTCAAGGTGTTGGAGTAATGCACTCTCCTTATTAGTTTCCTTTTAGTGGTCTCTTTTGTCCAAACAATATAAATCCTATTTATTTTCCAAAATAATATAAATCCTATTTATATATGTCATTTTTTATTAAATATTATTTTATCAATAATATTCTTTGGTAGAAGAATGGTTTAATAAATTGGTTAAATTATAATAAAGTTTATTAATTGTAAGAACTCATGCAAATAAGTATCCTAACTGGTAATTTTCTTTAGATATATAAGATCCAGAAAAAAAGAAAAAAAAAAGGTATAAGAGTATGAGAGCGGGGAAGAAGAAAGATCATATTCATAGGGATTAGTTGCAACATCAAAGCAATAATTTTTTTGTTCCTGAACAAATTAAAGCAATATAATTTTTTTTTGAGCAATAAAGTTAAATGCTGTAGAATGTGTACTTTTCTAAAGTAGTGGCATGACAAAAATCACTATTCACTATTATGCATTGCACGTATGCCAAAATTTATTTTACATTGCATAGTATTGTATTGAGTATGTTCTGTTGGGTTTGACACATTTGTCAGCTCTGGTTAGGTTTTATATGGAACGAATGCATACACTAAGGCATGCCCCTTTCACGGTAGTGTTATGTGCATGTCTTGTGATCTCAAAGGCATAATATAATTAAGGACCATTAAATGCACGATCAAACATATATTTACCACTAGACTTACCATGAAACTTAGTTCCTCACATTCATGTGATGATTACTGTGAAACTTGTGCGTTTGTTTCAAGTTATATTTGTAGATTCCTGGGAATAAAACGATAGGAATACATATGTCTATGTTTGTTACAAGTTTACTAAATTTTATTCCCGGGTATAAAACGTTCCTGGGAATAGAAAAAATTTCCCAAAGAAAAGGGTGGGAATAAAGTTCACATGGAGATGGGAATAAATTCATGAGTAATTTCCTATTATAATTCCTATTTTTATGGTTCCCAGGAATATTATAGCGTTAAACAAACATCTTTTTTCTAAATACCTTGGAATAAAATTCTCATCTTTATGTTCCAAGGAATATTATTCCTAGGAATGAATTTGGTAAACTTGAAACAAACACATGATAAAAAGAAATAGTAGTCAACATTGTGTAAGTCACACAAAAAAAAAAGGGAAATGTTAATAGTACCTTTAGGGCACTCTTTAAGGATTTTAGATAGTAAGTTTTTATGAAAATTTGTACATTCAAAGCATTGGAAATTGAAAATTCTTCAAGAATGCTTTTAAAACACTCATTAGCAAGACCCAAATAACATTATGTAAGTCATTATGTTCATGTCAACCACACAATATTGGAATATGATGACGAGGGTTGGAACAATTTTTTTTTCTTCCAATATCCCACTCTATCACCCACTCTTTAATCAAGTGAAATCAATGTGCTTTTGATACTTTAAAGATGGTTCTCATATGAAGTGATGAGATTCACATGAATTTCACACAACAACAAGAGAGTACATATTGTTCCTAACATAGTTGTATTTATACATTAATTTAAAATTCAAGTGTCACAACAGTGTTAGGACCCGTTTGTTACCTTATCTTTTGTGAATTAGAAAAACATAAATTTTAGAAGTTCTATTTATTTATTACAAAAAAAATAATTAAAAATATCTGAAATTGCTTTGAAAAAAATGTTGTTTTTAGTAGCTTCTTTTGAAAATTATTTTTAATAATTAACATTTTTTAAATAAAAATGATTTTCTAAAAAGACAATCCCTAAATTATTGATATCAAAATAACTTTCTTATAATTAGTAACAAATGACCTTTAATGTCATCGCTAATACATTACACAACAATATGGGGTAATGACAAACTCCATCATTATTATCCTAAACACTAATACTAAAGCTGTTTCATACGCCCTAACCTATTGATCATTTATTCATTTATATGGTATATGGGTTTTTATAGATAACTAATAGTTTAAGGGTCATGTTAAGCAACCCTTATGACACATATTAAGCAACCCAAAAATGGAAACATTTTCTTAAATTTTGTGCATTCAATTATTGAAAAGTAAAAAAGTTAAAGTCAAATTCATTAATTACAATAGAATATTTCTATTTTGAATCATTAACTTGTGTCTTGAGGGCACAAGTTAACATTTCCCATAGTTTAAATACAATTATATACTTGATTAATTACAGGTTGTGGAGTTGCAAGCAGAGTTAGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATCTCTGAAGATCCTCAATTTCAACAGCCTCAAAGCTCTTCAATATCACCAACTTTGCATTCATCCTTACTTCATCATTTGTCATCAAGCAATGAAACTTCTTACATGTCCATGCACTTTGGTCATCCTCTTCAAAATGATCAATATCATCCAACACCTTTTGAAAATCCATCATACTATTCCTATAATCAACAACTTCATGACCAGGAATTCCAAGCTTTGCCTTGA
Protein sequence

>MS.gene018154.t1

MDLGCGDDGGGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHLFALQQQVVELQAELAYVQARLSILNRISEDPQFQQPQSSSISPTLHSSLLHHLSSSNETSYMSMHFGHPLQNDQYHPTPFENPSYYSYNQQLHDQEFQALP