AlfalfaGEDB | MS.gene018180

M. sativa cultivar XinJiangDaYe / MS.gene018180

KEGG: -
GO: GO:0000160 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018180.t1	XP_013451230.1	93.5	169	10	1	4	171	3	171	4.70E-82	313.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018180.t1	A2XE31	35.3	136	86	2	7	141	9	143	3.3e-20	99.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018180.t1	A0A072UHJ5	93.5	169	10	1	4	171	3	171	3.4e-82	313.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene018180.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018180.t1	MTR_6g016850	93.491	169	10	1	4	171	3	171	6.82e-117	328
MS.gene018180.t1	MTR_8g105600	91.975	162	13	0	4	165	3	164	1.85e-106	316
MS.gene018180.t1	MTR_4g021790	47.826	161	83	1	1	161	1	160	5.63e-47	154
MS.gene018180.t1	MTR_4g021845	45.625	160	86	1	1	160	1	159	6.12e-46	150
MS.gene018180.t1	MTR_8g093040	53.147	143	61	3	1	138	1	142	1.54e-44	148
MS.gene018180.t1	MTR_4g021760	45.342	161	86	2	1	160	1	160	2.50e-44	149
MS.gene018180.t1	MTR_5g055260	44.099	161	82	1	1	161	1	153	3.31e-43	144
MS.gene018180.t1	MTR_4g021855	44.375	160	88	1	1	160	1	159	8.24e-43	144
MS.gene018180.t1	MTR_6g045327	41.250	160	91	3	5	162	9	167	5.16e-32	118
MS.gene018180.t1	MTR_1g032570	39.286	140	83	2	2	140	3	141	3.25e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018180.t1	AT1G67710	33.333	165	100	3	11	174	8	163	1.27e-26	105
MS.gene018180.t1	AT2G01760	38.583	127	75	3	8	132	5	130	6.60e-26	102
MS.gene018180.t1	AT3G16857	35.484	124	78	2	10	132	33	155	2.33e-22	93.6
MS.gene018180.t1	AT3G16857	35.484	124	78	2	10	132	33	155	2.40e-22	93.6
MS.gene018180.t1	AT4G31920	34.400	125	80	2	8	131	11	134	3.09e-21	90.1
MS.gene018180.t1	AT2G25180	32.847	137	90	2	8	143	11	146	1.09e-20	88.6
MS.gene018180.t1	AT2G01760	31.613	155	75	4	8	132	5	158	2.33e-20	87.0
MS.gene018180.t1	AT5G49240	31.783	129	86	2	6	133	34	161	4.31e-19	82.4
MS.gene018180.t1	AT1G49190	30.534	131	89	2	5	134	25	154	6.31e-17	77.4
MS.gene018180.t1	AT1G49190	30.534	131	89	2	5	134	25	154	8.60e-17	77.4

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Find 23 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAGTAAAGTATATG+TGG	0.524588	6.3:+12571494	MS.gene018180:CDS
AAATCAAATGAATCCATGTC+CGG	0.545425	6.3:-12571243	None:intergenic
AACGATGCAACATCGGAAAA+AGG	0.322362	6.3:+12571628	MS.gene018180:CDS
AATCACAAGAACTTTAACAT+TGG	0.529369	6.3:-12570994	None:intergenic
AATCATCTCTTGCCCTTATT+TGG	0.189913	6.3:-12571591	None:intergenic
ACAAGAACTTTAACATTGGC+TGG	0.429953	6.3:-12570990	None:intergenic
ACGCTTAAACGATGCAACAT+CGG	0.539685	6.3:+12571621	MS.gene018180:CDS
ACTACTTGAAACTCAAATGC+CGG	0.562943	6.3:+12571224	MS.gene018180:CDS
ATAATGAAGGCCATTGAAAA+TGG	0.335391	6.3:+12571439	MS.gene018180:CDS
ATATGTGGCATCATGCTGTT+AGG	0.443627	6.3:+12571509	MS.gene018180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCAATGAGCAATTGG+GGG	+	chr6.3:12571558-12571577	MS.gene018180:CDS	30.0%
AAATCAAATGAATCCATGTC+CGG	-	chr6.3:12571246-12571265	None:intergenic	30.0%
ATAATGAAGGCCATTGAAAA+TGG	+	chr6.3:12571439-12571458	MS.gene018180:CDS	30.0%
TCAATGCTATTGAGAAAACA+TGG	+	chr6.3:12571036-12571055	MS.gene018180:CDS	30.0%
AATCATCTCTTGCCCTTATT+TGG	-	chr6.3:12571594-12571613	None:intergenic	35.0%
ACAAGAACTTTAACATTGGC+TGG	-	chr6.3:12570993-12571012	None:intergenic	35.0%
ACTACTTGAAACTCAAATGC+CGG	+	chr6.3:12571224-12571243	MS.gene018180:CDS	35.0%
GCTGTTAGGAAAATGATGAA+AGG	+	chr6.3:12571523-12571542	MS.gene018180:CDS	35.0%
AACGATGCAACATCGGAAAA+AGG	+	chr6.3:12571628-12571647	MS.gene018180:CDS	40.0%
ACGCTTAAACGATGCAACAT+CGG	+	chr6.3:12571621-12571640	MS.gene018180:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	12570960	12571669	12570960	ID=MS.gene018180
chr6.3	mRNA	12570960	12571669	12570960	ID=MS.gene018180.t1;Parent=MS.gene018180
chr6.3	exon	12570960	12571077	12570960	ID=MS.gene018180.t1.exon1;Parent=MS.gene018180.t1
chr6.3	CDS	12570960	12571077	12570960	ID=cds.MS.gene018180.t1;Parent=MS.gene018180.t1
chr6.3	exon	12571157	12571306	12571157	ID=MS.gene018180.t1.exon2;Parent=MS.gene018180.t1
chr6.3	CDS	12571157	12571306	12571157	ID=cds.MS.gene018180.t1;Parent=MS.gene018180.t1
chr6.3	exon	12571407	12571669	12571407	ID=MS.gene018180.t1.exon3;Parent=MS.gene018180.t1
chr6.3	CDS	12571407	12571669	12571407	ID=cds.MS.gene018180.t1;Parent=MS.gene018180.t1

Gene Sequence

>MS.gene018180

ATGGCTTTTTTTTCCTTTGGAAATGAGTTTCCAGCCAATGTTAAAGTTCTTGTGATTGATCATGATATTGATCTTCTCAATGCTATTGAGAAAACATGGTCTCGATTCAATTACCAAGGTTTGTAATTCTTAATTGAATTATATTAACCTATGAAAGTCTCAATCTTTTTGTTACAATTCTTGTTTCTTTGTTTCAGTTACAACATGCTCGACGGTTTCTTCAGCCATGAATTTGATAGCACAAAAGGTGCATTTTGATTTGGTACTACTTGAAACTCAAATGCCGGACATGGATTCATTTGATTTCTTGCAACAATTGACACAACAAATCAATATTCCTGTCATTAGTAAGTAAATATATAATTAATTATATTATCATATCATATCATATCACATGATTAATTTATACTTGCATGAGATGAGACATTATAATTTATTTATGTGCAGTGACGATGTGTTCTGAAGGATCAACAAATGGAATAATGAAGGCCATTGAAAATGGAGCTTGTGACTGTTTTGTCAAGCCATTCACTGAAAATCAAGTAAAGTATATGTGGCATCATGCTGTTAGGAAAATGATGAAAGGAAATAAAAAACAAAAAATCAATGAGCAATTGGGGGTTGAAGGTAGCCAAATAAGGGCAAGAGATGATTCAAATTTACGCTTAAACGATGCAACATCGGAAAAAGGTGACGAAGAAAAAGAGTAA

Protein sequence

>MS.gene018180.t1

MAFFSFGNEFPANVKVLVIDHDIDLLNAIEKTWSRFNYQVTTCSTVSSAMNLIAQKVHFDLVLLETQMPDMDSFDFLQQLTQQINIPVIMTMCSEGSTNGIMKAIENGACDCFVKPFTENQVKYMWHHAVRKMMKGNKKQKINEQLGVEGSQIRARDDSNLRLNDATSEKGDEEKE