Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018180.t1 | XP_013451230.1 | 93.5 | 169 | 10 | 1 | 4 | 171 | 3 | 171 | 4.70E-82 | 313.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018180.t1 | A2XE31 | 35.3 | 136 | 86 | 2 | 7 | 141 | 9 | 143 | 3.3e-20 | 99.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018180.t1 | A0A072UHJ5 | 93.5 | 169 | 10 | 1 | 4 | 171 | 3 | 171 | 3.4e-82 | 313.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene018180.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018180.t1 | MTR_6g016850 | 93.491 | 169 | 10 | 1 | 4 | 171 | 3 | 171 | 6.82e-117 | 328 |
MS.gene018180.t1 | MTR_8g105600 | 91.975 | 162 | 13 | 0 | 4 | 165 | 3 | 164 | 1.85e-106 | 316 |
MS.gene018180.t1 | MTR_4g021790 | 47.826 | 161 | 83 | 1 | 1 | 161 | 1 | 160 | 5.63e-47 | 154 |
MS.gene018180.t1 | MTR_4g021845 | 45.625 | 160 | 86 | 1 | 1 | 160 | 1 | 159 | 6.12e-46 | 150 |
MS.gene018180.t1 | MTR_8g093040 | 53.147 | 143 | 61 | 3 | 1 | 138 | 1 | 142 | 1.54e-44 | 148 |
MS.gene018180.t1 | MTR_4g021760 | 45.342 | 161 | 86 | 2 | 1 | 160 | 1 | 160 | 2.50e-44 | 149 |
MS.gene018180.t1 | MTR_5g055260 | 44.099 | 161 | 82 | 1 | 1 | 161 | 1 | 153 | 3.31e-43 | 144 |
MS.gene018180.t1 | MTR_4g021855 | 44.375 | 160 | 88 | 1 | 1 | 160 | 1 | 159 | 8.24e-43 | 144 |
MS.gene018180.t1 | MTR_6g045327 | 41.250 | 160 | 91 | 3 | 5 | 162 | 9 | 167 | 5.16e-32 | 118 |
MS.gene018180.t1 | MTR_1g032570 | 39.286 | 140 | 83 | 2 | 2 | 140 | 3 | 141 | 3.25e-30 | 115 |
MS.gene018180.t1 | MTR_3g086100 | 37.594 | 133 | 81 | 2 | 3 | 134 | 6 | 137 | 2.28e-27 | 107 |
MS.gene018180.t1 | MTR_8g079940 | 34.641 | 153 | 98 | 2 | 10 | 161 | 25 | 176 | 3.50e-26 | 103 |
MS.gene018180.t1 | MTR_3g106220 | 33.728 | 169 | 106 | 3 | 7 | 170 | 5 | 172 | 5.86e-25 | 100 |
MS.gene018180.t1 | MTR_1g013180 | 34.756 | 164 | 104 | 3 | 8 | 170 | 154 | 315 | 6.40e-25 | 100 |
MS.gene018180.t1 | MTR_4g121020 | 37.302 | 126 | 77 | 2 | 8 | 132 | 29 | 153 | 1.70e-24 | 99.8 |
MS.gene018180.t1 | MTR_4g121020 | 37.302 | 126 | 77 | 2 | 8 | 132 | 29 | 153 | 1.76e-24 | 99.8 |
MS.gene018180.t1 | MTR_2g034960 | 38.095 | 126 | 76 | 2 | 8 | 132 | 27 | 151 | 3.31e-24 | 98.6 |
MS.gene018180.t1 | MTR_1g013170 | 38.095 | 126 | 76 | 2 | 8 | 132 | 3 | 127 | 4.73e-24 | 97.8 |
MS.gene018180.t1 | MTR_7g117705 | 36.220 | 127 | 78 | 2 | 8 | 132 | 3 | 128 | 1.41e-23 | 96.7 |
MS.gene018180.t1 | MTR_4g023980 | 40.566 | 106 | 62 | 1 | 55 | 160 | 35 | 139 | 1.63e-23 | 91.7 |
MS.gene018180.t1 | MTR_4g131600 | 33.333 | 156 | 102 | 2 | 6 | 160 | 16 | 170 | 5.51e-23 | 95.1 |
MS.gene018180.t1 | MTR_4g131570 | 31.977 | 172 | 110 | 3 | 6 | 176 | 13 | 178 | 1.53e-22 | 94.0 |
MS.gene018180.t1 | MTR_3g102600 | 34.646 | 127 | 81 | 2 | 6 | 131 | 4 | 129 | 6.85e-21 | 85.1 |
MS.gene018180.t1 | MTR_4g131580 | 29.762 | 168 | 111 | 3 | 10 | 176 | 17 | 178 | 7.40e-21 | 89.0 |
MS.gene018180.t1 | MTR_3g102600 | 34.646 | 127 | 81 | 2 | 6 | 131 | 4 | 129 | 1.08e-20 | 85.5 |
MS.gene018180.t1 | MTR_2g450070 | 32.540 | 126 | 83 | 2 | 8 | 132 | 16 | 140 | 8.98e-20 | 85.9 |
MS.gene018180.t1 | MTR_2g450070 | 32.540 | 126 | 83 | 2 | 8 | 132 | 16 | 140 | 9.73e-20 | 85.9 |
MS.gene018180.t1 | MTR_3g102590 | 35.156 | 128 | 80 | 3 | 7 | 132 | 5 | 131 | 1.93e-18 | 79.0 |
MS.gene018180.t1 | MTR_3g102590 | 33.793 | 145 | 86 | 4 | 7 | 149 | 5 | 141 | 2.44e-18 | 79.7 |
MS.gene018180.t1 | MTR_3g102600 | 39.726 | 73 | 43 | 1 | 59 | 131 | 9 | 80 | 1.14e-14 | 67.8 |
MS.gene018180.t1 | MTR_8g032710 | 31.667 | 120 | 81 | 1 | 12 | 130 | 19 | 138 | 2.02e-14 | 70.5 |
MS.gene018180.t1 | MTR_3g102600 | 39.726 | 73 | 43 | 1 | 59 | 131 | 9 | 80 | 2.05e-14 | 67.8 |
MS.gene018180.t1 | MTR_1g032570 | 31.731 | 104 | 70 | 1 | 68 | 171 | 1 | 103 | 7.72e-14 | 68.9 |
MS.gene018180.t1 | MTR_0450s0040 | 30.000 | 120 | 82 | 2 | 12 | 130 | 6 | 124 | 5.46e-13 | 66.2 |
MS.gene018180.t1 | MTR_3g086100 | 38.806 | 67 | 40 | 1 | 68 | 134 | 1 | 66 | 9.67e-13 | 65.5 |
MS.gene018180.t1 | MTR_8g024260 | 33.065 | 124 | 78 | 3 | 13 | 132 | 35 | 157 | 1.69e-12 | 65.1 |
MS.gene018180.t1 | MTR_4g061360 | 31.707 | 123 | 79 | 3 | 14 | 132 | 89 | 210 | 6.82e-11 | 60.5 |
MS.gene018180.t1 | MTR_7g118260 | 29.008 | 131 | 88 | 3 | 11 | 137 | 11 | 140 | 7.57e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018180.t1 | AT1G67710 | 33.333 | 165 | 100 | 3 | 11 | 174 | 8 | 163 | 1.27e-26 | 105 |
MS.gene018180.t1 | AT2G01760 | 38.583 | 127 | 75 | 3 | 8 | 132 | 5 | 130 | 6.60e-26 | 102 |
MS.gene018180.t1 | AT3G16857 | 35.484 | 124 | 78 | 2 | 10 | 132 | 33 | 155 | 2.33e-22 | 93.6 |
MS.gene018180.t1 | AT3G16857 | 35.484 | 124 | 78 | 2 | 10 | 132 | 33 | 155 | 2.40e-22 | 93.6 |
MS.gene018180.t1 | AT4G31920 | 34.400 | 125 | 80 | 2 | 8 | 131 | 11 | 134 | 3.09e-21 | 90.1 |
MS.gene018180.t1 | AT2G25180 | 32.847 | 137 | 90 | 2 | 8 | 143 | 11 | 146 | 1.09e-20 | 88.6 |
MS.gene018180.t1 | AT2G01760 | 31.613 | 155 | 75 | 4 | 8 | 132 | 5 | 158 | 2.33e-20 | 87.0 |
MS.gene018180.t1 | AT5G49240 | 31.783 | 129 | 86 | 2 | 6 | 133 | 34 | 161 | 4.31e-19 | 82.4 |
MS.gene018180.t1 | AT1G49190 | 30.534 | 131 | 89 | 2 | 5 | 134 | 25 | 154 | 6.31e-17 | 77.4 |
MS.gene018180.t1 | AT1G49190 | 30.534 | 131 | 89 | 2 | 5 | 134 | 25 | 154 | 8.60e-17 | 77.4 |
MS.gene018180.t1 | AT5G58080 | 30.625 | 160 | 105 | 4 | 8 | 166 | 12 | 166 | 2.76e-16 | 75.9 |
MS.gene018180.t1 | AT3G62670 | 29.927 | 137 | 92 | 3 | 15 | 150 | 42 | 175 | 5.67e-16 | 75.1 |
MS.gene018180.t1 | AT1G67710 | 33.645 | 107 | 62 | 2 | 68 | 174 | 1 | 98 | 2.66e-14 | 70.1 |
MS.gene018180.t1 | AT3G16857 | 36.471 | 85 | 52 | 2 | 49 | 132 | 2 | 85 | 5.85e-13 | 66.2 |
MS.gene018180.t1 | AT2G46790 | 30.233 | 129 | 84 | 4 | 10 | 133 | 32 | 159 | 8.52e-13 | 65.9 |
MS.gene018180.t1 | AT2G46790 | 30.233 | 129 | 84 | 4 | 10 | 133 | 32 | 159 | 9.46e-13 | 65.9 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 1.60e-11 | 62.0 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 2.02e-11 | 61.6 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 2.02e-11 | 61.6 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 2.02e-11 | 61.6 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 2.47e-11 | 61.6 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 2.47e-11 | 61.6 |
MS.gene018180.t1 | AT5G60100 | 32.258 | 124 | 79 | 3 | 13 | 132 | 63 | 185 | 2.47e-11 | 61.6 |
Find 23 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCATCTCTTGCCCTTATT+TGG | 0.189913 | 6.3:-12571591 | None:intergenic |
GGGTTGAAGGTAGCCAAATA+AGG | 0.310675 | 6.3:+12571578 | MS.gene018180:CDS |
AACGATGCAACATCGGAAAA+AGG | 0.322362 | 6.3:+12571628 | MS.gene018180:CDS |
ATAATGAAGGCCATTGAAAA+TGG | 0.335391 | 6.3:+12571439 | MS.gene018180:CDS |
ACAAGAACTTTAACATTGGC+TGG | 0.429953 | 6.3:-12570990 | None:intergenic |
ATATGTGGCATCATGCTGTT+AGG | 0.443627 | 6.3:+12571509 | MS.gene018180:CDS |
CATGAATTTGATAGCACAAA+AGG | 0.447668 | 6.3:+12571185 | MS.gene018180:CDS |
TATATTTACTTACTAATGAC+AGG | 0.483959 | 6.3:-12571297 | None:intergenic |
TGTTCTGAAGGATCAACAAA+TGG | 0.496320 | 6.3:+12571415 | MS.gene018180:CDS |
ATCAACAAATGGAATAATGA+AGG | 0.507137 | 6.3:+12571426 | MS.gene018180:CDS |
GGTTGAAGGTAGCCAAATAA+GGG | 0.508208 | 6.3:+12571579 | MS.gene018180:CDS |
AAAATCAAGTAAAGTATATG+TGG | 0.524588 | 6.3:+12571494 | MS.gene018180:CDS |
AATCACAAGAACTTTAACAT+TGG | 0.529369 | 6.3:-12570994 | None:intergenic |
TGAAACTCAAATGCCGGACA+TGG | 0.529643 | 6.3:+12571230 | MS.gene018180:CDS |
ACGCTTAAACGATGCAACAT+CGG | 0.539685 | 6.3:+12571621 | MS.gene018180:CDS |
AAATCAAATGAATCCATGTC+CGG | 0.545425 | 6.3:-12571243 | None:intergenic |
ACTACTTGAAACTCAAATGC+CGG | 0.562943 | 6.3:+12571224 | MS.gene018180:CDS |
GGCTGGAAACTCATTTCCAA+AGG | 0.566229 | 6.3:-12570973 | None:intergenic |
GCTGTTAGGAAAATGATGAA+AGG | 0.599623 | 6.3:+12571523 | MS.gene018180:CDS |
TGGTCTCGATTCAATTACCA+AGG | 0.605981 | 6.3:+12571056 | MS.gene018180:CDS |
TTCAGTTACAACATGCTCGA+CGG | 0.610352 | 6.3:+12571152 | MS.gene018180:intron |
TCAATGCTATTGAGAAAACA+TGG | 0.646799 | 6.3:+12571036 | MS.gene018180:CDS |
GCAGTGACGATGTGTTCTGA+AGG | 0.690924 | 6.3:+12571403 | MS.gene018180:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATCAAGTAAAGTATATG+TGG | + | chr6.3:12571494-12571513 | MS.gene018180:CDS | 20.0% |
!! | TATATTTACTTACTAATGAC+AGG | - | chr6.3:12571300-12571319 | None:intergenic | 20.0% |
! | AAAAAATCAATGAGCAATTG+GGG | + | chr6.3:12571557-12571576 | MS.gene018180:CDS | 25.0% |
! | AAAAAGATTGAGACTTTCAT+AGG | - | chr6.3:12571110-12571129 | None:intergenic | 25.0% |
! | AATCACAAGAACTTTAACAT+TGG | - | chr6.3:12570997-12571016 | None:intergenic | 25.0% |
! | ACAAAAAATCAATGAGCAAT+TGG | + | chr6.3:12571555-12571574 | MS.gene018180:CDS | 25.0% |
! | ATCAACAAATGGAATAATGA+AGG | + | chr6.3:12571426-12571445 | MS.gene018180:CDS | 25.0% |
! | CAAAAAATCAATGAGCAATT+GGG | + | chr6.3:12571556-12571575 | MS.gene018180:CDS | 25.0% |
! | CAATTAAGAATTACAAACCT+TGG | - | chr6.3:12571076-12571095 | None:intergenic | 25.0% |
!! | TTTACTTGATTTTCAGTGAA+TGG | - | chr6.3:12571487-12571506 | None:intergenic | 25.0% |
AAAAATCAATGAGCAATTGG+GGG | + | chr6.3:12571558-12571577 | MS.gene018180:CDS | 30.0% | |
AAATCAAATGAATCCATGTC+CGG | - | chr6.3:12571246-12571265 | None:intergenic | 30.0% | |
ATAATGAAGGCCATTGAAAA+TGG | + | chr6.3:12571439-12571458 | MS.gene018180:CDS | 30.0% | |
TCAATGCTATTGAGAAAACA+TGG | + | chr6.3:12571036-12571055 | MS.gene018180:CDS | 30.0% | |
! | CATGAATTTGATAGCACAAA+AGG | + | chr6.3:12571185-12571204 | MS.gene018180:CDS | 30.0% |
! | CTTTTGTGCTATCAAATTCA+TGG | - | chr6.3:12571187-12571206 | None:intergenic | 30.0% |
!!! | ACAAAAGGTGCATTTTGATT+TGG | + | chr6.3:12571200-12571219 | MS.gene018180:CDS | 30.0% |
AATCATCTCTTGCCCTTATT+TGG | - | chr6.3:12571594-12571613 | None:intergenic | 35.0% | |
ACAAGAACTTTAACATTGGC+TGG | - | chr6.3:12570993-12571012 | None:intergenic | 35.0% | |
ACTACTTGAAACTCAAATGC+CGG | + | chr6.3:12571224-12571243 | MS.gene018180:CDS | 35.0% | |
GCTGTTAGGAAAATGATGAA+AGG | + | chr6.3:12571523-12571542 | MS.gene018180:CDS | 35.0% | |
!! | TGTTCTGAAGGATCAACAAA+TGG | + | chr6.3:12571415-12571434 | MS.gene018180:CDS | 35.0% |
AACGATGCAACATCGGAAAA+AGG | + | chr6.3:12571628-12571647 | MS.gene018180:CDS | 40.0% | |
ACGCTTAAACGATGCAACAT+CGG | + | chr6.3:12571621-12571640 | MS.gene018180:CDS | 40.0% | |
ATATGTGGCATCATGCTGTT+AGG | + | chr6.3:12571509-12571528 | MS.gene018180:CDS | 40.0% | |
GGTTGAAGGTAGCCAAATAA+GGG | + | chr6.3:12571579-12571598 | MS.gene018180:CDS | 40.0% | |
TGGTCTCGATTCAATTACCA+AGG | + | chr6.3:12571056-12571075 | MS.gene018180:CDS | 40.0% | |
TTCAGTTACAACATGCTCGA+CGG | + | chr6.3:12571152-12571171 | MS.gene018180:intron | 40.0% | |
! | GTCACAAGCTCCATTTTCAA+TGG | - | chr6.3:12571452-12571471 | None:intergenic | 40.0% |
AATGAGCAATTGGGGGTTGA+AGG | + | chr6.3:12571565-12571584 | MS.gene018180:CDS | 45.0% | |
GGCTGGAAACTCATTTCCAA+AGG | - | chr6.3:12570976-12570995 | None:intergenic | 45.0% | |
GGGTTGAAGGTAGCCAAATA+AGG | + | chr6.3:12571578-12571597 | MS.gene018180:CDS | 45.0% | |
TGAAACTCAAATGCCGGACA+TGG | + | chr6.3:12571230-12571249 | MS.gene018180:CDS | 45.0% | |
GCAGTGACGATGTGTTCTGA+AGG | + | chr6.3:12571403-12571422 | MS.gene018180:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 12570960 | 12571669 | 12570960 | ID=MS.gene018180 |
chr6.3 | mRNA | 12570960 | 12571669 | 12570960 | ID=MS.gene018180.t1;Parent=MS.gene018180 |
chr6.3 | exon | 12570960 | 12571077 | 12570960 | ID=MS.gene018180.t1.exon1;Parent=MS.gene018180.t1 |
chr6.3 | CDS | 12570960 | 12571077 | 12570960 | ID=cds.MS.gene018180.t1;Parent=MS.gene018180.t1 |
chr6.3 | exon | 12571157 | 12571306 | 12571157 | ID=MS.gene018180.t1.exon2;Parent=MS.gene018180.t1 |
chr6.3 | CDS | 12571157 | 12571306 | 12571157 | ID=cds.MS.gene018180.t1;Parent=MS.gene018180.t1 |
chr6.3 | exon | 12571407 | 12571669 | 12571407 | ID=MS.gene018180.t1.exon3;Parent=MS.gene018180.t1 |
chr6.3 | CDS | 12571407 | 12571669 | 12571407 | ID=cds.MS.gene018180.t1;Parent=MS.gene018180.t1 |
Gene Sequence |
Protein sequence |