AlfalfaGEDB | MS.gene018289

M. sativa cultivar XinJiangDaYe / MS.gene018289

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018289.t1	XP_013451086.1	90.6	905	76	3	1	901	1	900	0.00E+00	1571.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018289.t1	Q9SCZ4	46.9	894	428	22	27	901	30	895	2.6e-201	703.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018289.t1	A0A072U6W4	90.6	905	76	3	1	901	1	900	0.0e+00	1571.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene018289.t1	MTR_6g015805	93.923	905	46	3	1	901	1	900	1731
MS.gene018289.t1	MTR_6g015795	87.356	435	47	3	1	430	1	432	780
MS.gene018289.t1	MTR_7g073660	47.527	930	403	25	11	901	16	899	733
MS.gene018289.t1	MTR_7g015670	46.444	900	420	27	26	901	31	892	716
MS.gene018289.t1	MTR_7g015390	46.111	900	422	28	26	901	29	889	704
MS.gene018289.t1	MTR_7g015550	46.264	910	403	31	26	901	31	888	693
MS.gene018289.t1	MTR_7g015510	46.044	910	405	31	26	901	31	888	691
MS.gene018289.t1	MTR_7g015310	47.608	836	376	23	12	822	13	811	679
MS.gene018289.t1	MTR_4g052290	46.691	831	394	22	12	822	13	814	673
MS.gene018289.t1	MTR_7g015250	44.231	884	408	24	26	882	29	854	661

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018289.t1	AT3G51550	47.546	917	406	28	18	901	21	895	0.0	743
MS.gene018289.t1	AT5G39000	43.701	897	434	25	27	901	26	873	0.0	656
MS.gene018289.t1	AT5G38990	43.506	924	452	30	4	901	1	880	0.0	647
MS.gene018289.t1	AT5G28680	44.671	835	398	24	10	819	7	802	0.0	633
MS.gene018289.t1	AT5G28680	44.671	835	398	24	10	819	7	802	0.0	633
MS.gene018289.t1	AT3G04690	42.890	879	418	27	14	851	7	842	0.0	627
MS.gene018289.t1	AT5G59700	38.425	838	432	21	10	832	8	776	2.33e-172	521
MS.gene018289.t1	AT3G46290	39.157	830	429	25	7	824	6	771	5.75e-170	515
MS.gene018289.t1	AT1G30570	38.316	843	446	28	7	822	9	804	2.42e-168	511
MS.gene018289.t1	AT5G54380	36.911	913	495	26	8	901	5	855	1.76e-166	507

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Find 186 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTCAATTGGCTCAT+AGG	0.405257	6.2:-10652416	None:intergenic
AAAATTCAAATGCATCCTTT+TGG	0.347587	6.2:+10655228	MS.gene018289:CDS
AAACCGTTGGTATAAGTAGT+AGG	0.406261	6.2:-10652667	None:intergenic
AAAGAATATGTTATTAACGT+TGG	0.468220	6.2:+10652796	MS.gene018289:CDS
AAATCTGATGTTTACTCTTT+TGG	0.234157	6.2:+10656221	MS.gene018289:CDS
AAATGGACACAAAATCAAAA+AGG	0.416019	6.2:+10655132	MS.gene018289:CDS
AACAGAGTACTGTGTATTAG+TGG	0.500222	6.2:-10652965	None:intergenic
AACCGTTGGTATAAGTAGTA+GGG	0.547927	6.2:-10652666	None:intergenic
AACCTCAATTGTGGCACAAC+AGG	0.373259	6.2:+10652439	MS.gene018289:CDS
AAGCTCCTGCAGAGATCCGA+CGG	0.599938	6.2:-10655615	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGATATGTAGTTGGAT+TGG	-	chr6.2:10653727-10653746	None:intergenic	30.0%
ACAATTTGTAGGTGTTCAAA+TGG	-	chr6.2:10653744-10653763	None:intergenic	30.0%
ATAATATAGATCATCAGGCA+TGG	-	chr6.2:10652908-10652927	None:intergenic	30.0%
ATAATGACGTGTTTAGTAGT+GGG	+	chr6.2:10656603-10656622	MS.gene018289:CDS	30.0%
ATGTTAGTACGGTTGTTAAA+GGG	+	chr6.2:10656147-10656166	MS.gene018289:CDS	30.0%
CCATACTTCAAAATAGATGA+CGG	+	chr6.2:10653068-10653087	MS.gene018289:intron	30.0%
GATCATTGTCTATGATTTCA+TGG	+	chr6.2:10655884-10655903	MS.gene018289:CDS	30.0%
GGTGTATAATATAGATCATC+AGG	-	chr6.2:10652913-10652932	None:intergenic	30.0%
GTGTGAATAAGTGAAAATTG+CGG	+	chr6.2:10654529-10654548	MS.gene018289:intron	30.0%
GTTGTTATAGGAGTTGTATT+TGG	+	chr6.2:10655426-10655445	MS.gene018289:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	10652340	10656772	10652340	ID=MS.gene018289
chr6.2	mRNA	10652340	10656772	10652340	ID=MS.gene018289.t1;Parent=MS.gene018289
chr6.2	exon	10652340	10653012	10652340	ID=MS.gene018289.t1.exon1;Parent=MS.gene018289.t1
chr6.2	CDS	10652340	10653012	10652340	ID=cds.MS.gene018289.t1;Parent=MS.gene018289.t1
chr6.2	exon	10654740	10656772	10654740	ID=MS.gene018289.t1.exon2;Parent=MS.gene018289.t1
chr6.2	CDS	10654740	10656772	10654740	ID=cds.MS.gene018289.t1;Parent=MS.gene018289.t1

Gene Sequence

>MS.gene018289

ATGAAACCATTGATAAACTTCAAAACCATAATCATCACCCTCTTATACTTTTCCACCTCCCTCTTACACCTTCATGCCTATGAGCCAATTGACCGTTTTAACCTCAATTGTGGCACAACAGGAAACTCTACCGACGGACAAAGAACATGGACAGGAGACATAAACTCAAAACTTTTGTCATCATTACAAAACAACCCAACAACAGTTTCTGTTCCAAAAACAACACAAAACAAAGTTCCATATTCATCAGCTCGTTTATCACACTCAATATTCAACTATTCTTTACCCGTCAGTACAGGTCCTAAATTCCTCCGTCTGTTTTTCTACCCTACTACTTATACCAACGGTTTTAACCGTTATGATGCTTCTTTTACCGTTATTTCTAATGGTTTCACACTTCTTAAGGATTTTAATGCTTCATTAAACGCTGATGTTGAAGGTGTTGATACTATATTGAAAGAATATGTTATTAACGTTGGTGATGATCAAAGGCTTGATTTGAGTTTTATTCCAAGTAGTGGAAATTCTAATAATTATGGTTTTATTAATGGAATTGAAGTCTTATCCATGCCTGATGATCTATATTATACACCACCTGATGATCCTGGATTTTCACTTGTGGGGGCCACTAATACACAGTACTCTGTTCCTACCGGTGTTGCACTTGAGACAGGTACCAATTATGTTAACTTTACTTACTACTCTCATAGTCTCATACACTGAAGCCCCCATACTTCAAAATAGATGACGGCGTCATCGATATCTGTCTGATACTTTCCGATACGTATCAAGAAAGTATTTGAAGATTTTTTTTTTTAAATAATTATCCGATACTTCCCGATACGTATCAGAAGAGTATCTGATAATTATCCTGCACCAATACCTGCCTCAATATTTCCCAATTAATATTTAACTAAAATAACTTAACTCTTGAGTACTGATGTGTTTTTTTTGGATATAGTGCTTCTTTTTTGGATCGATATAGTATAGCACTAACAATGTTCCATTCATATATAGTATAACACTGATGGTGCTCTTTTTGGGATATATTGTGTATGCAGTTGACTAATCATCACTCTCTTAATCATCAATATTATTTATATTTATGTTGATGTCCTACGAGCTTATGACTGGTTTCTTTTGTTTGTTAATATATTTGCATATTAAAAAAAATGGTTATGATTATATTGTATATTTAATTATATAATTTTTTTATTAACGTATCTCAACATATCATATCTAGATTTTGAAATTTTTCCGTATCGGCGTATCGGTGCAATATCGTATCTCGTATCCAGGCTTCATAGGTCTCATACGTATCACATGAATTGAACTTCTCTATCTGCAAATTTAAATGTCACTAGTACTGTTCAGAATTTATGTTCCAATCCAACTACATATCCATTTGAACACCTACAAATTGTTCTTAATCAAGTTCAATTTTGTGGATTGAAAAATTCAATAAATAATTGGCTGATACAGTTTTGATTCCCTTATTTTCACTCACTCAAGAAATTGGTCATCTATTTAACTTAGCATTCTCTTCTCACTTGCATTCATTTGTCAAGCATGTAATTTGTATTTAGAAAGAAGAAAAAAAAAGTACAGTTAACATGTGTTTTTATATGTCCTACGGGCGCACCAAAGATTGAAATTATGCATTGAAAATTGTGTTAATTTATTTTTTTAAAATTTTTAAATAAAATTATTTTTTCTCAAAAAGTATTTATTGATTGAGGAATCTTTAACATGTATTGATGACCCAAAAATGACATGACTAAATTTTTTAGTCAACTCTTACTAACAAACATCCTACTAGGTGAATGTGTGTATCTTCCAAAAAATTTAATTGAATTTTGATCCAATAATTAAAATCCAGGATTAATTCTTAAAGTTTCATAGAAGAATTTTAGTGTGAAATTCAATTAGCTAGATTAATGATTATGGATGCTTATTCACTTGAAAGAATTATTATAGTTTCATACTTCAATGAATTTTAAACAAGATTTGAATTAGAATTATGTTATATTATTGTTATTGTTTGTCGGGTCATGATAACACCTAAGGAGATATGTTAAACAATACAAAAGTAGCAATTTGCATTCAACAAAAAAAAATAAAAAATCTTTTGAATGCATGACTTTTAAATAGATTATCTTTTTTTTTTTAGTGACAAGAATCACTTCCTTGTGTGAATAAGTGAAAATTGCGGGTTCAATTCCGCGTTTGAACACATCAAACATCATTAGAGATATCAACTGAATTGTACGCACAAATGGATTTCCTTTAGATCCTAAAAACATATACCTAATGTCATCCTATTATATATTGGTTGCATTCTTTTTCAGCAGTTAACAAAAACAAACTTTTGATAACAAAAATCAATATACTCCATTGCAGATTACAGAATCAAAGTTGGAGTGCAAGATAACTCACCAAACATTCCAGACATAGGCATGCTCAGAAATTGGAACATCAATGACACAACATATGTAAAAACACCAACAGCACTTGACTTCGTCCCAGCAGATATAACAGGTACGAGGAACATAACTGTAACACCTGATTACATAGCACCAAAAGACCTCTTCAGATCAGCACGTGACTTAGGAACCAATGCTACTCTCAACAGACTCTTGAACCTAACATGGGAATTCCCCGTTGATTCGGGCTTCACTTACTTCATCAGGCTCCATTTTTGTGAACTCGACCCCAACATAACTCGTGCAGGTGATAGAGTCTTCACTATTTATTTACAAGGAAATGTGGCTGTAGAACAAGCTGATGTTTTGAAATGGACACAAAATCAAAAAGGTCTTGCTGTGCAACAAAACTACGCGGTTTTGATTCCAAAGGGTGAAAGTAATAGTAACAAAAAAGTTAACCTCAAAATTCAAATGCATCCTTTTGGTAATGGTGATAGTCGATACACAAAATTCAGTGACCCTTTTTTAAATGGCCTTGAAATTTTCAAAATCAGTGAGATCAGTTCGAAGAATCTAGCTGGACCGAATCCAGACCCGGTTCAGAATCCCGTTCAAGAGAAGAATAGCAAAAAAAGCATAAATGGAACGACAATAATTGGTGTTGTTATAGGAGTTGTATTTGGTGTAGTTTTACTTTCCATTGTCGTTTTCTTCGTTTACAGAAGAAAACGACAAACAGAAGAGAAAAACTCTAAAACCACAAAAGATTCAAAGTCTTCGACGACTTCAAAGTGGGGTCCATTGTCATTTGCAACAACAACAAAATCAACCAACTCAAACTCATCTCTACCGTCGGATCTCTGCAGGAGCTTCTCCCTTCTAGAGATCCGTGCCGCCACAAACAACTTCGACGAACTCTTCATAGTTGGAGTTGGAGGATTTGGCCATGTGTACAAAGGCTACATTGATAACGGTTCAACACAGGTTGCGATAAAAAGGCTTAAACCGGGTTCACAACAAGGTGAAAATGAGTTCATCAATGAAATCGACATGCTCTCGAAGCTTCGTCATCTTCATCTCGTTTCCCTGATCGGTTATTGCAATGAGAACAACGAAATGATCATTGTCTATGATTTCATGGCACGTGGAACATTACGCGATCATCTTTATAATACCGAGAATCCTGCTTTATCGTGGAAACAACGGTTGCAAATTTCGATAGGAGCAGCACGTGGATTACACTACCTTCATACTGGTGCGAAGAACACGATTATTCACCGTGATGTGAAGACGACGAATATTCTGTTAGATGATAGATGGATAGCAAAGGTTTCTGATTTTGGGCTTTCGAGGATTGGGCCTACTGGTATTTCGAAAGCCCATGTTAGTACGGTTGTTAAAGGGAGTGTTGGGTATTTAGACCCGGAGTATTATAAACGTCAGCGTTTGACAGAGAAATCTGATGTTTACTCTTTTGGTGTTGTTTTGTTCGAGATATTGTGCGCAAGGCCACCACTGATTAGAACCGCTGAAAAGAGACAGGTGTCGCTTGCTGATTGGGGGAGATATTGTTATAAAAATGGGATGTTGGGGAGTATTGTGGACCCTTCAGTGAAGTGGAGTATAGCGCCAGAGTGTTTGAGGAAATTCGGGGAGATTGCAGTTAGTTGTTTGTTGGATGATGGAACACTGAGGCCGTCGATGAATGATGTTGTTTGGATGTTGGAGTTTGCCTTGCAGTTACAAGAGAGTGCAGAACAGCGTGAGCCTCAAGCTGTTCCGCACACTCTTGGTCGTGGGAATGATGACGTGGAAGGTGAGAGAATAGATGAAAATGATAATGACGTGTTTAGTAGTGGGTCCGATGTAGGAATTGTTTCCGATTTTAACAAGACTAGTGCAGTGAGTGTGAGTACTATAAGTACCGGAAGTACTAGTGGTGATCATAGCTATGGTTATAACAGAGAAAGTGTTTTTTCTGAAATTATGGATCCAAAAGCACGTTGA

Protein sequence

>MS.gene018289.t1

MKPLINFKTIIITLLYFSTSLLHLHAYEPIDRFNLNCGTTGNSTDGQRTWTGDINSKLLSSLQNNPTTVSVPKTTQNKVPYSSARLSHSIFNYSLPVSTGPKFLRLFFYPTTYTNGFNRYDASFTVISNGFTLLKDFNASLNADVEGVDTILKEYVINVGDDQRLDLSFIPSSGNSNNYGFINGIEVLSMPDDLYYTPPDDPGFSLVGATNTQYSVPTGVALETDYRIKVGVQDNSPNIPDIGMLRNWNINDTTYVKTPTALDFVPADITGTRNITVTPDYIAPKDLFRSARDLGTNATLNRLLNLTWEFPVDSGFTYFIRLHFCELDPNITRAGDRVFTIYLQGNVAVEQADVLKWTQNQKGLAVQQNYAVLIPKGESNSNKKVNLKIQMHPFGNGDSRYTKFSDPFLNGLEIFKISEISSKNLAGPNPDPVQNPVQEKNSKKSINGTTIIGVVIGVVFGVVLLSIVVFFVYRRKRQTEEKNSKTTKDSKSSTTSKWGPLSFATTTKSTNSNSSLPSDLCRSFSLLEIRAATNNFDELFIVGVGGFGHVYKGYIDNGSTQVAIKRLKPGSQQGENEFINEIDMLSKLRHLHLVSLIGYCNENNEMIIVYDFMARGTLRDHLYNTENPALSWKQRLQISIGAARGLHYLHTGAKNTIIHRDVKTTNILLDDRWIAKVSDFGLSRIGPTGISKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPLIRTAEKRQVSLADWGRYCYKNGMLGSIVDPSVKWSIAPECLRKFGEIAVSCLLDDGTLRPSMNDVVWMLEFALQLQESAEQREPQAVPHTLGRGNDDVEGERIDENDNDVFSSGSDVGIVSDFNKTSAVSVSTISTGSTSGDHSYGYNRESVFSEIMDPKAR