Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018390.t1 | XP_003610239.2 | 94 | 265 | 16 | 0 | 1 | 265 | 1 | 265 | 3.10E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018390.t1 | G7JEC2 | 94.0 | 265 | 16 | 0 | 1 | 265 | 1 | 265 | 2.2e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene018390.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018390.t1 | MTR_4g129490 | 93.962 | 265 | 16 | 0 | 1 | 265 | 1 | 265 | 0.0 | 518 |
| MS.gene018390.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 106 | 277 | 5.49e-13 | 67.8 |
| MS.gene018390.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 106 | 277 | 5.73e-13 | 67.8 |
| MS.gene018390.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 94 | 265 | 7.58e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018390.t1 | AT4G28030 | 64.831 | 236 | 83 | 0 | 27 | 262 | 31 | 266 | 5.81e-115 | 331 |
| MS.gene018390.t1 | AT4G28030 | 61.017 | 236 | 81 | 1 | 27 | 262 | 31 | 255 | 2.03e-103 | 301 |
| MS.gene018390.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.79e-16 | 77.0 |
| MS.gene018390.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.79e-16 | 77.0 |
| MS.gene018390.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.79e-16 | 77.0 |
Find 48 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTAAGGAGCGTGTTTC+AGG | 0.154494 | 8.2:-4963312 | MS.gene018390:CDS |
| CAAAGTCAGTTGCTCGTAAT+TGG | 0.193463 | 8.2:-4962451 | MS.gene018390:CDS |
| CTTTCTACGATGATGAATTC+TGG | 0.240043 | 8.2:-4963584 | MS.gene018390:CDS |
| TTCATGTACAATTTCTTTGC+TGG | 0.253198 | 8.2:+4960571 | None:intergenic |
| GTTAATGCAGAATTTGAAAA+TGG | 0.275846 | 8.2:+4963708 | None:intergenic |
| AGGATTGAAATTGAATTCTA+AGG | 0.285749 | 8.2:+4963670 | None:intergenic |
| CGTAAGTGTCTGGACGAAAT+TGG | 0.337880 | 8.2:+4963529 | None:intergenic |
| GCTAGAGAGTTGCACAGAAA+TGG | 0.349757 | 8.2:-4962500 | MS.gene018390:CDS |
| AAAGTCAGTTGCTCGTAATT+GGG | 0.384466 | 8.2:-4962450 | MS.gene018390:CDS |
| AGTCTTCCTGATGAAATTGT+AGG | 0.385815 | 8.2:-4963009 | MS.gene018390:CDS |
| TGATTTATGTTCTTCATGTA+AGG | 0.404309 | 8.2:-4963214 | MS.gene018390:intron |
| ACGTGAGTTTGAAGCACTTA+AGG | 0.420143 | 8.2:-4963325 | MS.gene018390:CDS |
| AATGGAGAAGATGAATGAAT+TGG | 0.432279 | 8.2:+4963726 | None:intergenic |
| TTTCTACGATGATGAATTCT+GGG | 0.435140 | 8.2:-4963583 | MS.gene018390:CDS |
| CTAGAGAGTTGCACAGAAAT+GGG | 0.439454 | 8.2:-4962499 | MS.gene018390:CDS |
| ACTTGGACTCCGTAAGTGTC+TGG | 0.451152 | 8.2:+4963519 | None:intergenic |
| TTCATCCCTACAATTTCATC+AGG | 0.451868 | 8.2:+4963003 | None:intergenic |
| CAATTTCGTCCAGACACTTA+CGG | 0.474222 | 8.2:-4963528 | MS.gene018390:CDS |
| AGAAACCTTGCCTGCCATGC+AGG | 0.496588 | 8.2:+4960520 | None:intergenic |
| GGAGAAGATGAATGAATTGG+AGG | 0.499020 | 8.2:+4963729 | None:intergenic |
| ATTCTGCTAGTGGAGAAGAC+AGG | 0.503889 | 8.2:-4963068 | MS.gene018390:CDS |
| AATGTTTATGGAAGAAGCAT+AGG | 0.510788 | 8.2:+4963650 | None:intergenic |
| GGAGAAGACAGGGTTGTAGT+TGG | 0.511921 | 8.2:-4963057 | MS.gene018390:CDS |
| CTTTGCTGGTTCATTGTCAA+CGG | 0.514602 | 8.2:+4960585 | None:intergenic |
| CACTTAAGGAGCGTGTTTCA+GGG | 0.519287 | 8.2:-4963311 | MS.gene018390:CDS |
| CTAGTGGAGCTGATACTACA+AGG | 0.523464 | 8.2:-4962547 | MS.gene018390:CDS |
| AGAAATTGTACATGAAGAGC+GGG | 0.527874 | 8.2:-4960564 | MS.gene018390:CDS |
| GAGTGATGAACCTGCATGGC+AGG | 0.529229 | 8.2:-4960530 | MS.gene018390:CDS |
| ATGAACCTGCATGGCAGGCA+AGG | 0.531331 | 8.2:-4960525 | MS.gene018390:CDS |
| TTAGGATCATGCTAAGTACT+TGG | 0.533106 | 8.2:-4963352 | MS.gene018390:intron |
| GTCTGGACGAAATTGGTTGA+AGG | 0.533997 | 8.2:+4963536 | None:intergenic |
| GCGAAGACTTCTGCTATGGA+TGG | 0.537747 | 8.2:-4960488 | MS.gene018390:CDS |
| ATCCATAGCAGAAGTCTTCG+CGG | 0.537820 | 8.2:+4960490 | None:intergenic |
| AAGAAATTGTACATGAAGAG+CGG | 0.548993 | 8.2:-4960565 | MS.gene018390:CDS |
| GACCGCGAAGACTTCTGCTA+TGG | 0.554635 | 8.2:-4960492 | MS.gene018390:CDS |
| AGGCTAGATAAATGTGACAT+AGG | 0.565192 | 8.2:+4963243 | None:intergenic |
| AGAGTTGCACAGAAATGGGT+TGG | 0.578468 | 8.2:-4962495 | MS.gene018390:CDS |
| AAGTCAGTTGCTCGTAATTG+GGG | 0.584670 | 8.2:-4962449 | MS.gene018390:intron |
| GTCTTCCTGATGAAATTGTA+GGG | 0.587974 | 8.2:-4963008 | MS.gene018390:CDS |
| AAGAACATAAATCATCATAG+AGG | 0.592116 | 8.2:+4963223 | None:intergenic |
| CGAAGACTTCTGCTATGGAT+GGG | 0.593997 | 8.2:-4960487 | MS.gene018390:CDS |
| TTCTGCTAGTGGAGAAGACA+GGG | 0.600017 | 8.2:-4963067 | MS.gene018390:CDS |
| GTTCATTGTCAACGGCAACA+TGG | 0.600217 | 8.2:+4960593 | None:intergenic |
| GAAGGAACGAACACGAAGAG+AGG | 0.628307 | 8.2:+4963554 | None:intergenic |
| TTCAGCGATTGTGATCAAAG+AGG | 0.684752 | 8.2:+4963608 | None:intergenic |
| TAGTGGAGCTGATACTACAA+GGG | 0.712956 | 8.2:-4962546 | MS.gene018390:CDS |
| AATTGTAGGGATGAAGCCAG+AGG | 0.725736 | 8.2:-4962995 | MS.gene018390:intron |
| ATGAGAGTGATGAACCTGCA+TGG | 0.752863 | 8.2:-4960534 | MS.gene018390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGAAAGAAAAAAAA+TGG | + | chr8.2:4960750-4960769 | None:intergenic | 10.0% |
| !! | AATATTCATAACTATTATAT+TGG | - | chr8.2:4962711-4962730 | MS.gene018390:intron | 10.0% |
| !! | TGTAATTTATATTTGTTTAT+CGG | - | chr8.2:4961080-4961099 | MS.gene018390:intron | 10.0% |
| !! | TTATGAATATTGAAATTATT+TGG | + | chr8.2:4962702-4962721 | None:intergenic | 10.0% |
| !! | TAAAACATTATACAATTTGA+TGG | + | chr8.2:4961655-4961674 | None:intergenic | 15.0% |
| !!! | AATATTCAGAACTTTTATAT+TGG | - | chr8.2:4962417-4962436 | MS.gene018390:intron | 15.0% |
| !!! | ATTAGCTATTTTTATAACAA+AGG | - | chr8.2:4961357-4961376 | MS.gene018390:intron | 15.0% |
| !! | AAAAGAAAATCTAATCAACT+AGG | + | chr8.2:4963335-4963354 | None:intergenic | 20.0% |
| !! | AAAGAAAATCTAATCAACTA+GGG | + | chr8.2:4963334-4963353 | None:intergenic | 20.0% |
| !! | ATGCTATCTTAAAATATAAC+TGG | + | chr8.2:4962970-4962989 | None:intergenic | 20.0% |
| !! | TGATTAAATTGACCAAAATT+AGG | + | chr8.2:4962312-4962331 | None:intergenic | 20.0% |
| !! | TTGGTCAATTTAATCATTAT+TGG | - | chr8.2:4962316-4962335 | MS.gene018390:intron | 20.0% |
| !! | TTTCCATTGAATTAAAATCA+AGG | + | chr8.2:4961053-4961072 | None:intergenic | 20.0% |
| !!! | AATTGTTCATATATTTGTTG+CGG | - | chr8.2:4963437-4963456 | MS.gene018390:intron | 20.0% |
| !!! | CATGCAATATTTTGATTAAT+AGG | + | chr8.2:4962612-4962631 | None:intergenic | 20.0% |
| !!! | TAGTTCTTTTGTAAATAGTA+GGG | - | chr8.2:4962870-4962889 | MS.gene018390:intron | 20.0% |
| !!! | TTAGTTCTTTTGTAAATAGT+AGG | - | chr8.2:4962869-4962888 | MS.gene018390:intron | 20.0% |
| !!! | TTTCCTTGATTTTAATTCAA+TGG | - | chr8.2:4961047-4961066 | MS.gene018390:intron | 20.0% |
| ! | AACATTATACAATTTGATGG+AGG | + | chr8.2:4961652-4961671 | None:intergenic | 25.0% |
| ! | AACCAAATTTCATATGATCT+TGG | - | chr8.2:4963078-4963097 | MS.gene018390:intron | 25.0% |
| ! | AAGAAAATCTAATCAACTAG+GGG | + | chr8.2:4963333-4963352 | None:intergenic | 25.0% |
| ! | AAGAACATAAATCATCATAG+AGG | + | chr8.2:4961010-4961029 | None:intergenic | 25.0% |
| ! | AATACAAATGGTTAGGATTA+AGG | + | chr8.2:4962012-4962031 | None:intergenic | 25.0% |
| ! | ACATTTCTTAAACCAAAAAG+TGG | - | chr8.2:4963563-4963582 | MS.gene018390:CDS | 25.0% |
| ! | AGGATTGAAATTGAATTCTA+AGG | + | chr8.2:4960563-4960582 | None:intergenic | 25.0% |
| ! | ATCTACAGTTCATGAAAAAA+TGG | - | chr8.2:4963010-4963029 | MS.gene018390:CDS | 25.0% |
| ! | ATTACCAATTAGATTCTATC+AGG | - | chr8.2:4961892-4961911 | MS.gene018390:intron | 25.0% |
| ! | GAATGTATAAAAAATACCTC+TGG | + | chr8.2:4961254-4961273 | None:intergenic | 25.0% |
| ! | GTTAATGCAGAATTTGAAAA+TGG | + | chr8.2:4960525-4960544 | None:intergenic | 25.0% |
| ! | TATATTTGTTTATCGGTCTT+TGG | - | chr8.2:4961087-4961106 | MS.gene018390:intron | 25.0% |
| ! | TATTCATGAGTATATGAACT+AGG | - | chr8.2:4963503-4963522 | MS.gene018390:intron | 25.0% |
| ! | TGATAGAATCTAATTGGTAA+TGG | + | chr8.2:4961893-4961912 | None:intergenic | 25.0% |
| ! | TGATTTATGTTCTTCATGTA+AGG | - | chr8.2:4961016-4961035 | MS.gene018390:intron | 25.0% |
| ! | TGTTCCAAATTGATAAACAA+TGG | - | chr8.2:4963117-4963136 | MS.gene018390:intron | 25.0% |
| ! | TTACCAATTAGATTCTATCA+GGG | - | chr8.2:4961893-4961912 | MS.gene018390:intron | 25.0% |
| ! | TTCTACATGACAATGAATAT+CGG | - | chr8.2:4963540-4963559 | MS.gene018390:CDS | 25.0% |
| ! | TTGAACTTGATTAGATATCA+GGG | - | chr8.2:4961976-4961995 | MS.gene018390:intron | 25.0% |
| !! | AATTTAGTTCAATACAGTTC+CGG | + | chr8.2:4963281-4963300 | None:intergenic | 25.0% |
| !! | AGACTTTCATTGTTTTCATT+AGG | - | chr8.2:4962537-4962556 | MS.gene018390:CDS | 25.0% |
| !! | ATTTTATAGTATTCTGCTAG+TGG | - | chr8.2:4961152-4961171 | MS.gene018390:intron | 25.0% |
| !! | GAAAATTGATAACTCTTCTA+TGG | - | chr8.2:4961605-4961624 | MS.gene018390:intron | 25.0% |
| !! | TAAGTACCAAATCCTTTTAA+AGG | + | chr8.2:4961952-4961971 | None:intergenic | 25.0% |
| !! | TTGTATAATGTTTTACTGTC+AGG | - | chr8.2:4961660-4961679 | MS.gene018390:intron | 25.0% |
| !!! | AGACTTTAATTGTTTTGAGT+AGG | - | chr8.2:4962248-4962267 | MS.gene018390:intron | 25.0% |
| !!! | ATTTTGAAATCTGTTGACAA+TGG | + | chr8.2:4963154-4963173 | None:intergenic | 25.0% |
| !!! | GACTTTAATTGTTTTGAGTA+GGG | - | chr8.2:4962249-4962268 | MS.gene018390:intron | 25.0% |
| AAGAAATTGTACATGAAGAG+CGG | - | chr8.2:4963665-4963684 | MS.gene018390:CDS | 30.0% | |
| AAGCACTTAAGAAACTGTTT+GGG | + | chr8.2:4961506-4961525 | None:intergenic | 30.0% | |
| AATGGAGAAGATGAATGAAT+TGG | + | chr8.2:4960507-4960526 | None:intergenic | 30.0% | |
| ATCATCCAAAACAAGCTTAA+GGG | + | chr8.2:4961565-4961584 | None:intergenic | 30.0% | |
| ATTCCCTGATAGAATCTAAT+TGG | + | chr8.2:4961899-4961918 | None:intergenic | 30.0% | |
| ATTTCCCGTATCAATACAAA+TGG | + | chr8.2:4962024-4962043 | None:intergenic | 30.0% | |
| CGTACCATTGTTTATCAATT+TGG | + | chr8.2:4963124-4963143 | None:intergenic | 30.0% | |
| CTTTATATATGATCCATGCT+AGG | - | chr8.2:4962170-4962189 | MS.gene018390:intron | 30.0% | |
| GACCAAGATCATATGAAATT+TGG | + | chr8.2:4963083-4963102 | None:intergenic | 30.0% | |
| GTTGAACTTGATTAGATATC+AGG | - | chr8.2:4961975-4961994 | MS.gene018390:intron | 30.0% | |
| GTTTGGATTGTGATAAAAGA+TGG | - | chr8.2:4960831-4960850 | MS.gene018390:intron | 30.0% | |
| TAAGACTTCCTAATTATCAC+TGG | + | chr8.2:4962636-4962655 | None:intergenic | 30.0% | |
| TAAGCACTTAAGAAACTGTT+TGG | + | chr8.2:4961507-4961526 | None:intergenic | 30.0% | |
| TAGGGTAACTATCATAATCA+TGG | - | chr8.2:4962888-4962907 | MS.gene018390:intron | 30.0% | |
| TGATTAATAGGACCCAAATT+TGG | + | chr8.2:4962600-4962619 | None:intergenic | 30.0% | |
| TTAGCTACTGAATTGCAAAA+GGG | - | chr8.2:4960805-4960824 | MS.gene018390:intron | 30.0% | |
| TTCATGTACAATTTCTTTGC+TGG | + | chr8.2:4963662-4963681 | None:intergenic | 30.0% | |
| TTTAGCTACTGAATTGCAAA+AGG | - | chr8.2:4960804-4960823 | MS.gene018390:intron | 30.0% | |
| TTTCTACGATGATGAATTCT+GGG | - | chr8.2:4960647-4960666 | MS.gene018390:intron | 30.0% | |
| ! | AAATTGTTTTCTCCGATGTT+TGG | + | chr8.2:4963389-4963408 | None:intergenic | 30.0% |
| ! | AACATCGGAGAAAACAATTT+TGG | - | chr8.2:4963389-4963408 | MS.gene018390:intron | 30.0% |
| ! | AATGTTTATGGAAGAAGCAT+AGG | + | chr8.2:4960583-4960602 | None:intergenic | 30.0% |
| ! | ATCAATAAGACTCATTTTGC+AGG | + | chr8.2:4962460-4962479 | None:intergenic | 30.0% |
| ! | CCTAACCATTTGTATTGATA+CGG | - | chr8.2:4962016-4962035 | MS.gene018390:intron | 30.0% |
| ! | CTAACCATTTGTATTGATAC+GGG | - | chr8.2:4962017-4962036 | MS.gene018390:intron | 30.0% |
| ! | CTTATTGATGACAGTAGTAA+TGG | - | chr8.2:4962471-4962490 | MS.gene018390:CDS | 30.0% |
| ! | GATCTAGGTTTGGTTATATT+TGG | - | chr8.2:4963216-4963235 | MS.gene018390:CDS | 30.0% |
| ! | GCATAAATAGACCATTTTCA+AGG | + | chr8.2:4961849-4961868 | None:intergenic | 30.0% |
| ! | TCAATAAGACTCATTTTGCA+GGG | + | chr8.2:4962459-4962478 | None:intergenic | 30.0% |
| ! | TTTACCTACTCACCTAATTT+TGG | - | chr8.2:4962297-4962316 | MS.gene018390:intron | 30.0% |
| !! | ATCTCTAAGACTTCATATCA+TGG | + | chr8.2:4962347-4962366 | None:intergenic | 30.0% |
| !! | GTTTCCATAAACTTGTTATC+CGG | - | chr8.2:4963259-4963278 | MS.gene018390:CDS | 30.0% |
| !! | TCTCTAAGACTTCATATCAT+GGG | + | chr8.2:4962346-4962365 | None:intergenic | 30.0% |
| !!! | ATTTTAGAGTGCCTATAACT+TGG | + | chr8.2:4963475-4963494 | None:intergenic | 30.0% |
| !!! | TTTTTGGGTGCAAATGTTTA+TGG | + | chr8.2:4960595-4960614 | None:intergenic | 30.0% |
| AAAGTCAGTTGCTCGTAATT+GGG | - | chr8.2:4961780-4961799 | MS.gene018390:intron | 35.0% | |
| ACAGGCAGTCAAATAAAAAC+AGG | + | chr8.2:4963040-4963059 | None:intergenic | 35.0% | |
| AGAAATTGTACATGAAGAGC+GGG | - | chr8.2:4963666-4963685 | MS.gene018390:CDS | 35.0% | |
| AGGCTAGATAAATGTGACAT+AGG | + | chr8.2:4960990-4961009 | None:intergenic | 35.0% | |
| AGTCTTCCTGATGAAATTGT+AGG | - | chr8.2:4961221-4961240 | MS.gene018390:intron | 35.0% | |
| AGTTCCGGATAACAAGTTTA+TGG | + | chr8.2:4963266-4963285 | None:intergenic | 35.0% | |
| ATGGAGTGAAAAAACTCACT+TGG | + | chr8.2:4960731-4960750 | None:intergenic | 35.0% | |
| ATTGTCATGTAGAAATCCCA+GGG | + | chr8.2:4963534-4963553 | None:intergenic | 35.0% | |
| ATTTGTGTTTATGTCCTGTC+CGG | - | chr8.2:4961298-4961317 | MS.gene018390:intron | 35.0% | |
| CCATGTAGATTCCAAGTTAT+AGG | - | chr8.2:4963461-4963480 | MS.gene018390:intron | 35.0% | |
| CCGTATCAATACAAATGGTT+AGG | + | chr8.2:4962019-4962038 | None:intergenic | 35.0% | |
| CCTATAACTTGGAATCTACA+TGG | + | chr8.2:4963464-4963483 | None:intergenic | 35.0% | |
| CCTCCAAATCAAAACTTATG+TGG | + | chr8.2:4962066-4962085 | None:intergenic | 35.0% | |
| CGCAACATGAAAAACATAAC+TGG | + | chr8.2:4962925-4962944 | None:intergenic | 35.0% | |
| CTTTCTACGATGATGAATTC+TGG | - | chr8.2:4960646-4960665 | MS.gene018390:intron | 35.0% | |
| GAAATGAACACGTGTAAAGA+AGG | - | chr8.2:4962039-4962058 | MS.gene018390:intron | 35.0% | |
| GATCATCCAAAACAAGCTTA+AGG | + | chr8.2:4961566-4961585 | None:intergenic | 35.0% | |
| GATCGACGTTACAAATTTAC+AGG | + | chr8.2:4963058-4963077 | None:intergenic | 35.0% | |
| GTCTTCCTGATGAAATTGTA+GGG | - | chr8.2:4961222-4961241 | MS.gene018390:intron | 35.0% | |
| GTTGTTTACATAAGCTGTCA+TGG | - | chr8.2:4961416-4961435 | MS.gene018390:intron | 35.0% | |
| TCAGGGAATTCAATTGTACT+TGG | - | chr8.2:4961910-4961929 | MS.gene018390:intron | 35.0% | |
| TCCATATTTGTGTGTCTTTC+AGG | - | chr8.2:4963596-4963615 | MS.gene018390:CDS | 35.0% | |
| TTAGGATCATGCTAAGTACT+TGG | - | chr8.2:4960878-4960897 | MS.gene018390:intron | 35.0% | |
| TTCATCCCTACAATTTCATC+AGG | + | chr8.2:4961230-4961249 | None:intergenic | 35.0% | |
| TTGACCAAAATTAGGTGAGT+AGG | + | chr8.2:4962304-4962323 | None:intergenic | 35.0% | |
| TTGCATGTCCAGTGATAATT+AGG | - | chr8.2:4962625-4962644 | MS.gene018390:intron | 35.0% | |
| TTTACCTGCTCACCAAATTT+GGG | - | chr8.2:4962585-4962604 | MS.gene018390:intron | 35.0% | |
| ! | ATAAGCCTTTGTCGTTTATC+CGG | + | chr8.2:4961320-4961339 | None:intergenic | 35.0% |
| ! | CTTGTGCCTTTAAAAGGATT+TGG | - | chr8.2:4961943-4961962 | MS.gene018390:intron | 35.0% |
| ! | TCAATTGTACTTGGAAGTGT+TGG | - | chr8.2:4961919-4961938 | MS.gene018390:intron | 35.0% |
| ! | TGATTTGGAGGATAGTTCAT+AGG | - | chr8.2:4962075-4962094 | MS.gene018390:intron | 35.0% |
| ! | TGTTTTCACTGCCTTGAAAA+TGG | - | chr8.2:4961835-4961854 | MS.gene018390:intron | 35.0% |
| !! | AATCTAATTGGTAATGGCAG+TGG | + | chr8.2:4961887-4961906 | None:intergenic | 35.0% |
| !! | GAGTCAATGTAACCACTTTT+TGG | + | chr8.2:4963578-4963597 | None:intergenic | 35.0% |
| !!! | CAAAGAGGTGTCGATTTTTT+GGG | + | chr8.2:4960610-4960629 | None:intergenic | 35.0% |
| !!! | CCACATAAGTTTTGATTTGG+AGG | - | chr8.2:4962063-4962082 | MS.gene018390:intron | 35.0% |
| !!! | GGTCCACATAAGTTTTGATT+TGG | - | chr8.2:4962060-4962079 | MS.gene018390:intron | 35.0% |
| !!! | TCAAAGAGGTGTCGATTTTT+TGG | + | chr8.2:4960611-4960630 | None:intergenic | 35.0% |
| AAGTCAGTTGCTCGTAATTG+GGG | - | chr8.2:4961781-4961800 | MS.gene018390:intron | 40.0% | |
| AGCATGTCTTGATGTTTGTG+AGG | - | chr8.2:4962985-4963004 | MS.gene018390:intron | 40.0% | |
| ATGATCCATGCTAGGAGTTA+AGG | - | chr8.2:4962178-4962197 | MS.gene018390:intron | 40.0% | |
| ATGTAACCAACTTCGTCTAG+TGG | - | chr8.2:4962510-4962529 | MS.gene018390:CDS | 40.0% | |
| CAAAGTCAGTTGCTCGTAAT+TGG | - | chr8.2:4961779-4961798 | MS.gene018390:intron | 40.0% | |
| CAATTTCGTCCAGACACTTA+CGG | - | chr8.2:4960702-4960721 | MS.gene018390:intron | 40.0% | |
| CATTGTCATGTAGAAATCCC+AGG | + | chr8.2:4963535-4963554 | None:intergenic | 40.0% | |
| CGTGTTTGTCAAGTTCTGTT+AGG | - | chr8.2:4960860-4960879 | MS.gene018390:intron | 40.0% | |
| CTAGAGAGTTGCACAGAAAT+GGG | - | chr8.2:4961731-4961750 | MS.gene018390:intron | 40.0% | |
| CTTTACCTGCTCACCAAATT+TGG | - | chr8.2:4962584-4962603 | MS.gene018390:intron | 40.0% | |
| GAGGATAGTTCATAGGTTAG+AGG | - | chr8.2:4962082-4962101 | MS.gene018390:intron | 40.0% | |
| GATAGCCAACTTTGTCTAGT+CGG | - | chr8.2:4962222-4962241 | MS.gene018390:intron | 40.0% | |
| GATCTTGGTCTCGAACATAA+TGG | - | chr8.2:4963093-4963112 | MS.gene018390:intron | 40.0% | |
| GCCTGAAAGACACACAAATA+TGG | + | chr8.2:4963600-4963619 | None:intergenic | 40.0% | |
| GGAGAAGATGAATGAATTGG+AGG | + | chr8.2:4960504-4960523 | None:intergenic | 40.0% | |
| TAGTGGAGCTGATACTACAA+GGG | - | chr8.2:4961684-4961703 | MS.gene018390:intron | 40.0% | |
| TGATCCATGCTAGGAGTTAA+GGG | - | chr8.2:4962179-4962198 | MS.gene018390:intron | 40.0% | |
| TGCCATGAAGAACCAAACAT+CGG | - | chr8.2:4963374-4963393 | MS.gene018390:intron | 40.0% | |
| TGTAACCAACTTCGTCTAGT+GGG | - | chr8.2:4962511-4962530 | MS.gene018390:CDS | 40.0% | |
| TTCAGCGATTGTGATCAAAG+AGG | + | chr8.2:4960625-4960644 | None:intergenic | 40.0% | |
| ! | AACAAGCTTAAGGGCATGTA+TGG | + | chr8.2:4961556-4961575 | None:intergenic | 40.0% |
| ! | ACGTGAGTTTGAAGCACTTA+AGG | - | chr8.2:4960905-4960924 | MS.gene018390:intron | 40.0% |
| ! | ACTAGACGAAGTTGGTTACA+TGG | + | chr8.2:4962511-4962530 | None:intergenic | 40.0% |
| ! | ATGTTTTACTGTCAGGCTAG+TGG | - | chr8.2:4961667-4961686 | MS.gene018390:intron | 40.0% |
| ! | GAATTGCAAAAGGGTGTGTT+TGG | - | chr8.2:4960814-4960833 | MS.gene018390:intron | 40.0% |
| ! | GACTGGAGTTTTCTATCACA+AGG | + | chr8.2:4963183-4963202 | None:intergenic | 40.0% |
| ! | GTTATATTTGGCTCGCAGTA+GGG | - | chr8.2:4963228-4963247 | MS.gene018390:CDS | 40.0% |
| ! | TCAACGAGACTCGTTTTGTA+GGG | + | chr8.2:4962753-4962772 | None:intergenic | 40.0% |
| ! | TTATATTTGGCTCGCAGTAG+GGG | - | chr8.2:4963229-4963248 | MS.gene018390:CDS | 40.0% |
| ! | TTTCTAGCAGACAAGTCTCT+TGG | + | chr8.2:4962803-4962822 | None:intergenic | 40.0% |
| !! | ACATGCCCTTAAGCTTGTTT+TGG | - | chr8.2:4961557-4961576 | MS.gene018390:intron | 40.0% |
| !! | CTTTGCTGGTTCATTGTCAA+CGG | + | chr8.2:4963648-4963667 | None:intergenic | 40.0% |
| !! | GTTGGTCTTGTGCCTTTAAA+AGG | - | chr8.2:4961937-4961956 | MS.gene018390:intron | 40.0% |
| !! | TGTGTGATGGTAATGGTGTT+TGG | + | chr8.2:4963310-4963329 | None:intergenic | 40.0% |
| AACACCCTTAACTCCTAGCA+TGG | + | chr8.2:4962186-4962205 | None:intergenic | 45.0% | |
| AAGCTGTCATGGAGAGCTTA+TGG | - | chr8.2:4961427-4961446 | MS.gene018390:intron | 45.0% | |
| AATTGTAGGGATGAAGCCAG+AGG | - | chr8.2:4961235-4961254 | MS.gene018390:intron | 45.0% | |
| AGAAAACTCCAGTCCAGAAC+TGG | - | chr8.2:4963189-4963208 | MS.gene018390:intron | 45.0% | |
| AGAGTTGCACAGAAATGGGT+TGG | - | chr8.2:4961735-4961754 | MS.gene018390:intron | 45.0% | |
| ATATGAACTAGGCAAGACCC+TGG | - | chr8.2:4963514-4963533 | MS.gene018390:intron | 45.0% | |
| ATCCATAGCAGAAGTCTTCG+CGG | + | chr8.2:4963743-4963762 | None:intergenic | 45.0% | |
| ATGAGAGTGATGAACCTGCA+TGG | - | chr8.2:4963696-4963715 | MS.gene018390:CDS | 45.0% | |
| ATTCTGCTAGTGGAGAAGAC+AGG | - | chr8.2:4961162-4961181 | MS.gene018390:intron | 45.0% | |
| CGAAGACTTCTGCTATGGAT+GGG | - | chr8.2:4963743-4963762 | MS.gene018390:CDS | 45.0% | |
| CGTAAGTGTCTGGACGAAAT+TGG | + | chr8.2:4960704-4960723 | None:intergenic | 45.0% | |
| CGTGTTTCAGGGAAAAAGAC+GGG | - | chr8.2:4960930-4960949 | MS.gene018390:intron | 45.0% | |
| CTAGTGGAGCTGATACTACA+AGG | - | chr8.2:4961683-4961702 | MS.gene018390:intron | 45.0% | |
| CTTCTCCGACTAGACAAAGT+TGG | + | chr8.2:4962230-4962249 | None:intergenic | 45.0% | |
| GCGTGTTTCAGGGAAAAAGA+CGG | - | chr8.2:4960929-4960948 | MS.gene018390:intron | 45.0% | |
| GCTAGAGAGTTGCACAGAAA+TGG | - | chr8.2:4961730-4961749 | MS.gene018390:intron | 45.0% | |
| GTCTGGACGAAATTGGTTGA+AGG | + | chr8.2:4960697-4960716 | None:intergenic | 45.0% | |
| GTTCATTGTCAACGGCAACA+TGG | + | chr8.2:4963640-4963659 | None:intergenic | 45.0% | |
| TAGCAGACAAGTCTCTTGGA+AGG | + | chr8.2:4962799-4962818 | None:intergenic | 45.0% | |
| TATGAACTAGGCAAGACCCT+GGG | - | chr8.2:4963515-4963534 | MS.gene018390:intron | 45.0% | |
| TTCTGCTAGTGGAGAAGACA+GGG | - | chr8.2:4961163-4961182 | MS.gene018390:intron | 45.0% | |
| ! | AACTGGCTTCGATCTAGGTT+TGG | - | chr8.2:4963206-4963225 | MS.gene018390:intron | 45.0% |
| ! | AATCAACTAGGGGTGTGTGA+TGG | + | chr8.2:4963323-4963342 | None:intergenic | 45.0% |
| ! | CACTTAAGGAGCGTGTTTCA+GGG | - | chr8.2:4960919-4960938 | MS.gene018390:intron | 45.0% |
| ! | CTTTTCCCACTAGACGAAGT+TGG | + | chr8.2:4962519-4962538 | None:intergenic | 45.0% |
| ! | GGTTATATTTGGCTCGCAGT+AGG | - | chr8.2:4963227-4963246 | MS.gene018390:CDS | 45.0% |
| ! | GTCAACGAGACTCGTTTTGT+AGG | + | chr8.2:4962754-4962773 | None:intergenic | 45.0% |
| ! | TATATTTGGCTCGCAGTAGG+GGG | - | chr8.2:4963230-4963249 | MS.gene018390:CDS | 45.0% |
| !! | CTCCGATGTTTGGTTCTTCA+TGG | + | chr8.2:4963379-4963398 | None:intergenic | 45.0% |
| ACCTAGATCGAAGCCAGTTC+TGG | + | chr8.2:4963205-4963224 | None:intergenic | 50.0% | |
| ACTTGGACTCCGTAAGTGTC+TGG | + | chr8.2:4960714-4960733 | None:intergenic | 50.0% | |
| CCTGTCCGGATAAACGACAA+AGG | - | chr8.2:4961312-4961331 | MS.gene018390:intron | 50.0% | |
| GAAGGAACGAACACGAAGAG+AGG | + | chr8.2:4960679-4960698 | None:intergenic | 50.0% | |
| GACAAGTCTCTTGGAAGGCT+TGG | + | chr8.2:4962794-4962813 | None:intergenic | 50.0% | |
| GCGAAGACTTCTGCTATGGA+TGG | - | chr8.2:4963742-4963761 | MS.gene018390:CDS | 50.0% | |
| GGAGAAGACAGGGTTGTAGT+TGG | - | chr8.2:4961173-4961192 | MS.gene018390:intron | 50.0% | |
| ! | AGGACCCAAATTTGGTGAGC+AGG | + | chr8.2:4962592-4962611 | None:intergenic | 50.0% |
| ! | AGTCTCTTGGAAGGCTTGGT+CGG | + | chr8.2:4962790-4962809 | None:intergenic | 50.0% |
| ! | ATATTTGGCTCGCAGTAGGG+GGG | - | chr8.2:4963231-4963250 | MS.gene018390:CDS | 50.0% |
| ! | CCTTTGTCGTTTATCCGGAC+AGG | + | chr8.2:4961315-4961334 | None:intergenic | 50.0% |
| ! | CTAGGGGTGTGTGATGGTAA+TGG | + | chr8.2:4963317-4963336 | None:intergenic | 50.0% |
| ! | GCACTTAAGGAGCGTGTTTC+AGG | - | chr8.2:4960918-4960937 | MS.gene018390:intron | 50.0% |
| ! | TCCAGAACTGGCTTCGATCT+AGG | - | chr8.2:4963201-4963220 | MS.gene018390:intron | 50.0% |
| AGAAACCTTGCCTGCCATGC+AGG | + | chr8.2:4963713-4963732 | None:intergenic | 55.0% | |
| ATGAACCTGCATGGCAGGCA+AGG | - | chr8.2:4963705-4963724 | MS.gene018390:CDS | 55.0% | |
| GACCGCGAAGACTTCTGCTA+TGG | - | chr8.2:4963738-4963757 | MS.gene018390:CDS | 55.0% | |
| GAGTGATGAACCTGCATGGC+AGG | - | chr8.2:4963700-4963719 | MS.gene018390:CDS | 55.0% | |
| ! | GTCTCTTGGAAGGCTTGGTC+GGG | + | chr8.2:4962789-4962808 | None:intergenic | 55.0% |
| !! | GATCGAAGCCAGTTCTGGAC+TGG | + | chr8.2:4963200-4963219 | None:intergenic | 55.0% |
| ! | TTGGAAGGCTTGGTCGGGAG+AGG | + | chr8.2:4962784-4962803 | None:intergenic | 60.0% |
| GGCTCGCAGTAGGGGGGATT+CGG | - | chr8.2:4963237-4963256 | MS.gene018390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 4960471 | 4963781 | 4960471 | ID=MS.gene018390 |
| chr8.2 | mRNA | 4960471 | 4963781 | 4960471 | ID=MS.gene018390.t1;Parent=MS.gene018390 |
| chr8.2 | exon | 4963521 | 4963781 | 4963521 | ID=MS.gene018390.t1.exon1;Parent=MS.gene018390.t1 |
| chr8.2 | CDS | 4963521 | 4963781 | 4963521 | ID=cds.MS.gene018390.t1;Parent=MS.gene018390.t1 |
| chr8.2 | exon | 4963215 | 4963370 | 4963215 | ID=MS.gene018390.t1.exon2;Parent=MS.gene018390.t1 |
| chr8.2 | CDS | 4963215 | 4963370 | 4963215 | ID=cds.MS.gene018390.t1;Parent=MS.gene018390.t1 |
| chr8.2 | exon | 4962996 | 4963091 | 4962996 | ID=MS.gene018390.t1.exon3;Parent=MS.gene018390.t1 |
| chr8.2 | CDS | 4962996 | 4963091 | 4962996 | ID=cds.MS.gene018390.t1;Parent=MS.gene018390.t1 |
| chr8.2 | exon | 4962450 | 4962570 | 4962450 | ID=MS.gene018390.t1.exon4;Parent=MS.gene018390.t1 |
| chr8.2 | CDS | 4962450 | 4962570 | 4962450 | ID=cds.MS.gene018390.t1;Parent=MS.gene018390.t1 |
| chr8.2 | exon | 4960471 | 4960634 | 4960471 | ID=MS.gene018390.t1.exon5;Parent=MS.gene018390.t1 |
| chr8.2 | CDS | 4960471 | 4960634 | 4960471 | ID=cds.MS.gene018390.t1;Parent=MS.gene018390.t1 |
| Gene Sequence |
| Protein sequence |
