AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018409

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018409.t1 MTR_1g047060 54.000 100 37 3 110 207 1 93 2.84e-27 101
MS.gene018409.t1 MTR_4g101680 33.758 157 81 6 4 146 7 154 2.39e-17 80.5
MS.gene018409.t1 MTR_4g094302 29.508 183 91 7 4 172 11 169 3.96e-17 77.4
MS.gene018409.t1 MTR_5g021710 33.117 154 86 5 4 146 8 155 8.30e-17 79.0
MS.gene018409.t1 MTR_1g069805 34.641 153 82 7 4 146 10 154 2.87e-16 76.6
MS.gene018409.t1 MTR_7g100990 33.750 160 80 7 4 145 11 162 5.51e-16 76.3
MS.gene018409.t1 MTR_1g008740 33.758 157 86 6 2 146 25 175 9.49e-16 75.9
MS.gene018409.t1 MTR_1g008740 33.758 157 86 6 2 146 11 161 1.09e-15 75.9
MS.gene018409.t1 MTR_2g080010 31.737 167 83 7 4 146 15 174 1.18e-15 75.9
MS.gene018409.t1 MTR_8g076110 34.194 155 83 6 4 146 6 153 1.63e-15 74.7
MS.gene018409.t1 MTR_4g094302 33.333 129 77 4 4 132 11 130 1.94e-15 72.0
MS.gene018409.t1 MTR_5g041940 30.625 160 85 6 4 146 3 153 2.41e-15 73.6
MS.gene018409.t1 MTR_8g023840 34.416 154 80 8 4 145 11 155 3.21e-15 74.7
MS.gene018409.t1 MTR_4g089135 35.556 135 74 5 4 132 15 142 3.93e-15 73.9
MS.gene018409.t1 MTR_2g093810 31.875 160 83 6 4 145 14 165 4.46e-15 73.9
MS.gene018409.t1 MTR_4g035590 29.798 198 112 10 4 188 8 191 4.64e-15 73.9
MS.gene018409.t1 MTR_3g109340 33.121 157 86 6 2 146 20 169 6.28e-15 73.6
MS.gene018409.t1 MTR_3g093040 34.161 161 76 10 4 146 108 256 7.21e-15 73.2
MS.gene018409.t1 MTR_3g093050 34.375 160 77 10 4 146 22 170 1.27e-14 73.2
MS.gene018409.t1 MTR_8g023900 33.544 158 82 8 2 145 10 158 1.73e-14 72.8
MS.gene018409.t1 MTR_8g023900 29.255 188 108 8 7 180 196 372 1.36e-11 64.3
MS.gene018409.t1 MTR_3g093050 34.375 160 77 10 4 146 22 170 1.92e-14 72.8
MS.gene018409.t1 MTR_8g467490 25.630 238 132 9 2 203 12 240 2.38e-14 72.0
MS.gene018409.t1 MTR_8g023860 31.410 156 88 6 1 145 9 156 4.45e-14 71.2
MS.gene018409.t1 MTR_3g064580 33.962 159 80 9 4 146 6 155 5.01e-14 71.6
MS.gene018409.t1 MTR_1g090720 34.356 163 79 7 4 146 42 196 1.30e-13 70.1
MS.gene018409.t1 MTR_5g014300 30.769 195 109 10 4 180 6 192 1.40e-13 69.7
MS.gene018409.t1 MTR_6g011860 31.515 165 83 9 4 146 15 171 3.47e-13 68.6
MS.gene018409.t1 MTR_5g069030 34.161 161 76 10 4 146 25 173 3.77e-13 68.9
MS.gene018409.t1 MTR_3g116070 31.293 147 89 5 4 144 23 163 4.31e-13 68.2
MS.gene018409.t1 MTR_7g005280 31.613 155 83 7 4 146 15 158 8.11e-13 66.6
MS.gene018409.t1 MTR_5g076850 32.704 159 81 9 4 146 6 154 8.42e-13 67.8
MS.gene018409.t1 MTR_8g024480 27.381 168 88 7 4 146 15 173 1.72e-12 66.6
MS.gene018409.t1 MTR_6g084430 32.051 156 86 7 2 146 3 149 2.59e-12 65.9
MS.gene018409.t1 MTR_2g079990 35.294 136 71 7 4 132 16 141 2.91e-12 65.9
MS.gene018409.t1 MTR_7g085220 28.571 168 87 8 4 146 8 167 7.20e-12 64.7
MS.gene018409.t1 MTR_2g078700 30.818 159 86 6 4 146 23 173 1.48e-11 63.9
MS.gene018409.t1 MTR_4g108760 31.646 158 84 8 4 146 17 165 2.86e-11 63.2
MS.gene018409.t1 MTR_3g096400 29.518 166 93 5 4 152 7 165 3.03e-11 61.6
MS.gene018409.t1 MTR_3g070030 28.824 170 93 7 4 154 19 179 8.90e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018409.t1 AT4G36160 33.544 158 88 5 4 150 10 161 1.15e-18 84.3
MS.gene018409.t1 AT4G36160 33.544 158 88 5 4 150 10 161 1.15e-18 84.3
MS.gene018409.t1 AT4G36160 33.544 158 88 5 4 150 14 165 1.17e-18 84.3
MS.gene018409.t1 AT1G71930 33.121 157 88 5 4 149 9 159 6.85e-18 81.6
MS.gene018409.t1 AT1G71930 33.121 157 88 5 4 149 9 159 6.85e-18 81.6
MS.gene018409.t1 AT2G24430 35.669 157 82 6 2 146 14 163 1.37e-17 80.9
MS.gene018409.t1 AT2G24430 35.669 157 82 6 2 146 14 163 1.37e-17 80.9
MS.gene018409.t1 AT2G18060 33.117 154 86 5 4 146 9 156 2.75e-17 80.5
MS.gene018409.t1 AT2G18060 33.117 154 86 5 4 146 9 156 2.75e-17 80.5
MS.gene018409.t1 AT4G28530 33.133 166 85 5 4 147 10 171 3.41e-16 77.4
MS.gene018409.t1 AT1G69490 32.500 160 82 7 4 146 9 159 6.24e-16 75.5
MS.gene018409.t1 AT1G26870 33.974 156 86 6 2 149 14 160 7.98e-16 76.6
MS.gene018409.t1 AT3G10490 33.544 158 82 7 4 146 27 176 2.00e-15 73.6
MS.gene018409.t1 AT2G27300 29.452 146 93 4 4 145 14 153 4.32e-15 73.9
MS.gene018409.t1 AT4G10350 33.962 159 80 9 4 146 9 158 4.37e-15 73.9
MS.gene018409.t1 AT4G17980 33.333 159 82 7 4 145 6 157 5.41e-15 72.8
MS.gene018409.t1 AT4G17980 33.125 160 83 7 3 145 5 157 6.24e-15 73.2
MS.gene018409.t1 AT5G63790 33.333 162 80 7 4 147 50 201 1.05e-14 72.8
MS.gene018409.t1 AT5G63790 33.333 162 80 7 4 147 60 211 1.19e-14 72.8
MS.gene018409.t1 AT3G03200 34.375 160 78 9 4 146 6 155 1.58e-14 72.8
MS.gene018409.t1 AT1G54330 32.026 153 87 6 4 146 6 151 1.90e-14 71.6
MS.gene018409.t1 AT5G64530 33.588 131 74 4 4 134 3 120 2.93e-14 69.3
MS.gene018409.t1 AT5G64530 33.588 131 74 4 4 134 3 120 3.02e-14 68.9
MS.gene018409.t1 AT3G10480 33.121 157 83 7 4 146 27 175 5.16e-14 71.2
MS.gene018409.t1 AT4G35580 31.902 163 89 8 1 149 6 160 6.73e-14 71.2
MS.gene018409.t1 AT4G35580 31.902 163 89 8 1 149 6 160 6.79e-14 71.2
MS.gene018409.t1 AT4G35580 31.902 163 89 8 1 149 6 160 7.38e-14 70.9
MS.gene018409.t1 AT5G39610 32.278 158 83 7 4 146 20 168 1.04e-13 69.7
MS.gene018409.t1 AT1G61110 34.058 138 75 6 4 134 16 144 1.90e-13 69.3
MS.gene018409.t1 AT5G04410 31.646 158 84 6 4 146 9 157 2.38e-13 69.7
MS.gene018409.t1 AT5G39820 33.835 133 75 5 6 132 22 147 2.94e-13 68.6
MS.gene018409.t1 AT3G10500 32.278 158 83 7 4 146 9 157 4.65e-13 68.6
MS.gene018409.t1 AT1G32770 28.729 181 85 8 4 149 16 187 4.75e-13 68.2
MS.gene018409.t1 AT2G46770 26.368 201 107 8 4 175 16 204 6.55e-13 67.8
MS.gene018409.t1 AT3G15170 31.447 159 85 7 3 145 19 169 7.34e-13 67.4
MS.gene018409.t1 AT3G18400 31.646 158 87 8 2 147 3 151 9.31e-13 67.0
MS.gene018409.t1 AT3G29035 31.447 159 83 7 4 146 24 172 1.27e-12 66.6
MS.gene018409.t1 AT4G27410 29.240 171 86 7 4 146 14 177 1.53e-12 66.6
MS.gene018409.t1 AT5G61430 32.278 158 83 7 4 146 16 164 2.15e-12 66.2
MS.gene018409.t1 AT3G15510 29.814 161 82 7 10 146 23 176 2.17e-12 66.2
MS.gene018409.t1 AT5G22290 28.571 147 90 6 6 145 23 161 2.81e-12 65.9
MS.gene018409.t1 AT5G24590 30.380 158 87 7 4 146 13 162 4.08e-12 65.9
MS.gene018409.t1 AT2G17040 30.323 155 82 7 6 146 8 150 4.41e-12 64.7
MS.gene018409.t1 AT1G32870 32.331 133 79 5 4 132 10 135 8.04e-12 65.1
MS.gene018409.t1 AT1G32870 32.331 133 79 5 4 132 10 135 8.70e-12 65.1
MS.gene018409.t1 AT3G04060 33.333 159 81 9 4 146 20 169 9.21e-12 64.3
MS.gene018409.t1 AT1G32870 32.331 133 79 5 4 132 46 171 1.28e-11 64.3
MS.gene018409.t1 AT5G53950 29.814 161 89 6 2 146 15 167 2.18e-11 63.5
MS.gene018409.t1 AT5G46590 32.374 139 80 6 4 135 6 137 2.44e-11 62.8
MS.gene018409.t1 AT1G34190 30.519 154 87 6 6 146 18 164 2.89e-11 63.5
MS.gene018409.t1 AT5G04395 31.333 150 80 6 4 135 28 172 3.97e-11 60.8

Find 49 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACTAATGCTTTCAATTA+TGG 0.184656 6.2:+45882704 MS.gene018409:CDS
CAATGGTTCTGACTTGATTA+AGG 0.258416 6.2:+45880516 MS.gene018409:CDS
GGCAATGTAAGATTGGATTT+TGG 0.279853 6.2:+45880650 MS.gene018409:CDS
CCTTGGGTGACGGAAGAAAA+AGG 0.350861 6.2:-45880587 None:intergenic
ATTGAAAGCATTAGTTGCTC+TGG 0.380713 6.2:-45882699 None:intergenic
ATGGATCTGGATGTTGAGTT+TGG 0.395501 6.2:+45880977 MS.gene018409:CDS
CCTCATCTGCTCATCAACTT+TGG 0.414860 6.2:-45880629 None:intergenic
GAAGAGGTTCAAAATTTCAA+TGG 0.434760 6.2:+45880499 MS.gene018409:CDS
GGAGTAAGACGCAATTCAAA+TGG 0.441267 6.2:-45880562 None:intergenic
GCTGTTCGAGACATTATTGT+TGG 0.457958 6.2:+45880685 MS.gene018409:CDS
GCAATTCAAATGGGTCATAC+TGG 0.459319 6.2:-45880552 None:intergenic
CAAATGGGTCATACTGGTAC+AGG 0.462094 6.2:-45880546 None:intergenic
CAGATGAGGCAATGTAAGAT+TGG 0.462721 6.2:+45880643 MS.gene018409:CDS
TTGAAAGCATTAGTTGCTCT+GGG 0.473709 6.2:-45882698 None:intergenic
CGAAGTTACTCAGAAACCTA+TGG 0.482750 6.2:+45881054 MS.gene018409:CDS
GAATTGCTTCCACCTGGTGT+TGG 0.483908 6.2:+45880421 MS.gene018409:CDS
AACACACGACAAAGAACAAA+AGG 0.484780 6.2:-45880938 None:intergenic
TCAATTAATTTACACAAGAT+CGG 0.501330 6.2:-45882748 None:intergenic
GTGAAGCAGTAAAATTCCCT+TGG 0.511128 6.2:-45880604 None:intergenic
AGAATGGCATCAAAACTAGT+TGG 0.512078 6.2:+45880770 MS.gene018409:CDS
CTGCCCACCAGAGATGGATC+TGG 0.513629 6.2:+45880964 MS.gene018409:CDS
TCAACATCCAGATCCATCTC+TGG 0.528153 6.2:-45880971 None:intergenic
CACTCTTGCTAACAATCCTC+AGG 0.528444 6.2:+45880807 MS.gene018409:CDS
GTTGATGAAGGTGATGCTAC+TGG 0.539280 6.2:+45881007 MS.gene018409:CDS
AGTAAAATTCCCTTGGGTGA+CGG 0.539767 6.2:-45880597 None:intergenic
GAAGGTGATGCTACTGGAGA+TGG 0.546862 6.2:+45881013 MS.gene018409:CDS
GAGTAAGACGCAATTCAAAT+GGG 0.549774 6.2:-45880561 None:intergenic
TGAAGCAGTAAAATTCCCTT+GGG 0.559532 6.2:-45880603 None:intergenic
CCAAAGTTGATGAGCAGATG+AGG 0.560720 6.2:+45880629 MS.gene018409:CDS
ACATCCAGATCCATCTCTGG+TGG 0.568257 6.2:-45880968 None:intergenic
GAAGTTACTCAGAAACCTAT+GGG 0.580237 6.2:+45881055 MS.gene018409:CDS
GAAGGGATGAAGCCAACACC+AGG 0.588550 6.2:-45880433 None:intergenic
TTTGGAGCAGATGTTGATGA+AGG 0.590115 6.2:+45880995 MS.gene018409:CDS
ATAGGAAATTCCGCTCAGAA+TGG 0.595921 6.2:+45880754 MS.gene018409:CDS
GTTTGACTGCCCACCAGAGA+TGG 0.602762 6.2:+45880958 MS.gene018409:CDS
TGTTGGAACTGATAACGTGT+TGG 0.614058 6.2:+45880702 MS.gene018409:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.616296 6.2:-45880450 None:intergenic
GCAATGGAATTGCTTCCACC+TGG 0.624048 6.2:+45880415 None:intergenic
TGGAACTGATAACGTGTTGG+TGG 0.634013 6.2:+45880705 MS.gene018409:CDS
TGACGATGTTGTCTTGCACA+TGG 0.636821 6.2:+45882665 MS.gene018409:CDS
TGGCAAGGTAGTAGATAACA+AGG 0.641793 6.2:-45880465 None:intergenic
ATAACAAGGAGTTCATCAGA+AGG 0.650392 6.2:-45880451 None:intergenic
CATCCAGATCCATCTCTGGT+GGG 0.656418 6.2:-45880967 None:intergenic
GGGATGAAGCCAACACCAGG+TGG 0.665656 6.2:-45880430 None:intergenic
GGAACTGATAACGTGTTGGT+GGG 0.675682 6.2:+45880706 MS.gene018409:CDS
AAGTTACTCAGAAACCTATG+GGG 0.699471 6.2:+45881056 MS.gene018409:CDS
AGTGCTGCTGTTGAGCAACG+CGG 0.701822 6.2:+45881100 MS.gene018409:CDS
TGAAAGCATTAGTTGCTCTG+GGG 0.714933 6.2:-45882697 None:intergenic
AGTTACTCAGAAACCTATGG+GGG 0.738835 6.2:+45881057 MS.gene018409:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTAAATTGTAATG+AGG - chr6.2:45882048-45882067 None:intergenic 10.0%
!! TATTATTATTATTATGAGTT+AGG + chr6.2:45881542-45881561 MS.gene018409:intron 10.0%
!!! TTTTTTTAAAATTATTATGC+AGG + chr6.2:45880913-45880932 MS.gene018409:intron 10.0%
!! ATAATAATAATAATAGAGTC+AGG - chr6.2:45882427-45882446 None:intergenic 15.0%
!! ATATGAATTAAAATAATCCT+AGG + chr6.2:45881957-45881976 MS.gene018409:intron 15.0%
!! CTTTGATTAAATAAAATCAA+CGG + chr6.2:45882354-45882373 MS.gene018409:intron 15.0%
!!! GTATTTTAATTATTCAGATA+TGG + chr6.2:45882184-45882203 MS.gene018409:intron 15.0%
!!! TTTTAATTCATATTCAATCA+TGG - chr6.2:45881950-45881969 None:intergenic 15.0%
!! AAAAAAATACATCACATGAA+TGG - chr6.2:45881266-45881285 None:intergenic 20.0%
!! AATACATTAAATAATCATCG+AGG - chr6.2:45880875-45880894 None:intergenic 20.0%
!! AATATAAAGAGAGATCAAAA+TGG - chr6.2:45881175-45881194 None:intergenic 20.0%
!! AGAAGAAGAATAATATTCAT+AGG - chr6.2:45881769-45881788 None:intergenic 20.0%
!! ATAAGATCAACAACATTAAT+TGG - chr6.2:45881200-45881219 None:intergenic 20.0%
!! CTTATGATAACAATTACAAT+TGG + chr6.2:45881858-45881877 MS.gene018409:intron 20.0%
!! TGATAATTCTCAAAACATAT+AGG + chr6.2:45881379-45881398 MS.gene018409:intron 20.0%
!!! AAAGAAACATGGATTAATTA+TGG - chr6.2:45881615-45881634 None:intergenic 20.0%
!!! AAGAAACATGGATTAATTAT+GGG - chr6.2:45881614-45881633 None:intergenic 20.0%
!!! CAACTTTTCATTTCATATTA+TGG + chr6.2:45882561-45882580 MS.gene018409:intron 20.0%
!!! CGTTGATTTTATTTAATCAA+AGG - chr6.2:45882356-45882375 None:intergenic 20.0%
!!! TCTCTTTTTATGTTCTATAT+AGG + chr6.2:45880736-45880755 MS.gene018409:CDS 20.0%
! AAAAACTCAAACTGAAAACA+TGG + chr6.2:45881688-45881707 MS.gene018409:intron 25.0%
! AAGAATAATATTCATAGGAG+TGG - chr6.2:45881764-45881783 None:intergenic 25.0%
! AATACTTCAACAATACATTC+TGG - chr6.2:45882593-45882612 None:intergenic 25.0%
! AGAACAAAGAGAATTATGAT+AGG + chr6.2:45882230-45882249 MS.gene018409:intron 25.0%
! AGAATAATATTCATAGGAGT+GGG - chr6.2:45881763-45881782 None:intergenic 25.0%
! ATACACAAGAAAAAGAAACA+TGG - chr6.2:45881626-45881645 None:intergenic 25.0%
! ATAGTGTGTGATTGAAAAAA+AGG + chr6.2:45882295-45882314 MS.gene018409:intron 25.0%
! TAAAAGCAATAATTGTGAGT+GGG - chr6.2:45881660-45881679 None:intergenic 25.0%
! TACATTTAGTAGCAAAGATT+GGG - chr6.2:45881294-45881313 None:intergenic 25.0%
! TTACATTTAGTAGCAAAGAT+TGG - chr6.2:45881295-45881314 None:intergenic 25.0%
!! GTTTAAAACGATAAAATCCT+AGG - chr6.2:45881977-45881996 None:intergenic 25.0%
!! TCAAATTTCACAGATTTTGA+AGG + chr6.2:45881127-45881146 MS.gene018409:CDS 25.0%
!!! AACCTCTTCATTATTTTTGT+TGG - chr6.2:45880488-45880507 None:intergenic 25.0%
!!! TGAATTGATTTGCTTGTTTT+TGG + chr6.2:45882612-45882631 MS.gene018409:intron 25.0%
AATAATATTCATAGGAGTGG+GGG - chr6.2:45881761-45881780 None:intergenic 30.0%
AATGATTACCAAACCCAAAT+TGG - chr6.2:45882265-45882284 None:intergenic 30.0%
ACATTTAGTAGCAAAGATTG+GGG - chr6.2:45881293-45881312 None:intergenic 30.0%
ATACGAGGAGTTAAATAAGA+GGG - chr6.2:45881805-45881824 None:intergenic 30.0%
ATAGGATTATGCTTCCAATT+TGG + chr6.2:45882248-45882267 MS.gene018409:intron 30.0%
ATTACAATTGGAGAGGAATA+TGG + chr6.2:45881870-45881889 MS.gene018409:intron 30.0%
CTAAAAGCAATAATTGTGAG+TGG - chr6.2:45881661-45881680 None:intergenic 30.0%
GAAGAGGTTCAAAATTTCAA+TGG + chr6.2:45880499-45880518 MS.gene018409:CDS 30.0%
GAATAATATTCATAGGAGTG+GGG - chr6.2:45881762-45881781 None:intergenic 30.0%
GATAACAATTACAATTGGAG+AGG + chr6.2:45881863-45881882 MS.gene018409:intron 30.0%
GCAACTAATGCTTTCAATTA+TGG + chr6.2:45882704-45882723 MS.gene018409:CDS 30.0%
TAAAATCAACGGTTGAGATT+TGG + chr6.2:45882365-45882384 MS.gene018409:intron 30.0%
TAGGATTATGCTTCCAATTT+GGG + chr6.2:45882249-45882268 MS.gene018409:intron 30.0%
TGCCAACAAAAATAATGAAG+AGG + chr6.2:45880483-45880502 MS.gene018409:CDS 30.0%
TGTCTACAAAATGAATCGTA+TGG + chr6.2:45882004-45882023 MS.gene018409:intron 30.0%
! AATTGGTTCAATTAGCATGT+AGG + chr6.2:45882127-45882146 MS.gene018409:intron 30.0%
! ATGGAATATATTTTACCTGC+AGG - chr6.2:45881156-45881175 None:intergenic 30.0%
! CAAAATGAATCGTATGGTTT+TGG + chr6.2:45882010-45882029 MS.gene018409:intron 30.0%
! TGGAATATATTTTACCTGCA+GGG - chr6.2:45881155-45881174 None:intergenic 30.0%
!!! CTTCATTATTTTTGTTGGCA+AGG - chr6.2:45880483-45880502 None:intergenic 30.0%
AACAAAGTCACCACAAGTTT+GGG + chr6.2:45882094-45882113 MS.gene018409:intron 35.0%
AACACACGACAAAGAACAAA+AGG - chr6.2:45880941-45880960 None:intergenic 35.0%
AAGAACTGACGAATAAGCTT+TGG - chr6.2:45881579-45881598 None:intergenic 35.0%
AAGTTACTCAGAAACCTATG+GGG + chr6.2:45881056-45881075 MS.gene018409:CDS 35.0%
AATCCTCAGGTATGGAATTT+GGG + chr6.2:45880820-45880839 MS.gene018409:intron 35.0%
AGAATGGCATCAAAACTAGT+TGG + chr6.2:45880770-45880789 MS.gene018409:CDS 35.0%
AGGAGTTAAATAAGAGGGAA+AGG - chr6.2:45881800-45881819 None:intergenic 35.0%
ATAACAAGGAGTTCATCAGA+AGG - chr6.2:45880454-45880473 None:intergenic 35.0%
CATACGAGGAGTTAAATAAG+AGG - chr6.2:45881806-45881825 None:intergenic 35.0%
GAAGTTACTCAGAAACCTAT+GGG + chr6.2:45881055-45881074 MS.gene018409:CDS 35.0%
GAGTAAGACGCAATTCAAAT+GGG - chr6.2:45880564-45880583 None:intergenic 35.0%
GTATGTATTGCAACACATGA+AGG + chr6.2:45881821-45881840 MS.gene018409:intron 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr6.2:45880453-45880472 None:intergenic 35.0%
TGAAGCAGTAAAATTCCCTT+GGG - chr6.2:45880606-45880625 None:intergenic 35.0%
! ATGGATTAATTATGGGCCTT+TGG - chr6.2:45881607-45881626 None:intergenic 35.0%
! ATTGGATTTTGGATGCAGAA+GGG + chr6.2:45880661-45880680 MS.gene018409:CDS 35.0%
! CGTCAGTTCTTTTAATCCAA+AGG + chr6.2:45881588-45881607 MS.gene018409:intron 35.0%
! GGCAATGTAAGATTGGATTT+TGG + chr6.2:45880650-45880669 MS.gene018409:CDS 35.0%
! TTATGCTTCCAATTTGGGTT+TGG + chr6.2:45882254-45882273 MS.gene018409:intron 35.0%
!! ATTGAAAGCATTAGTTGCTC+TGG - chr6.2:45882702-45882721 None:intergenic 35.0%
!! CAATGGTTCTGACTTGATTA+AGG + chr6.2:45880516-45880535 MS.gene018409:CDS 35.0%
!! TTGAAAGCATTAGTTGCTCT+GGG - chr6.2:45882701-45882720 None:intergenic 35.0%
!!! ATCGTATGGTTTTGGTAGAA+TGG + chr6.2:45882018-45882037 MS.gene018409:intron 35.0%
!!! GCTTGTTTTTGGTGTTTATC+AGG + chr6.2:45882623-45882642 MS.gene018409:intron 35.0%
AGGACGTGATTTGAAGAATC+TGG - chr6.2:45881435-45881454 None:intergenic 40.0%
AGTAAAATTCCCTTGGGTGA+CGG - chr6.2:45880600-45880619 None:intergenic 40.0%
AGTTACTCAGAAACCTATGG+GGG + chr6.2:45881057-45881076 MS.gene018409:CDS 40.0%
ATAGGAAATTCCGCTCAGAA+TGG + chr6.2:45880754-45880773 MS.gene018409:CDS 40.0%
ATCGAGGAAATCACGAACAA+AGG - chr6.2:45880859-45880878 None:intergenic 40.0%
ATGGATCTGGATGTTGAGTT+TGG + chr6.2:45880977-45880996 MS.gene018409:CDS 40.0%
CAACAAAGTCACCACAAGTT+TGG + chr6.2:45882093-45882112 MS.gene018409:intron 40.0%
CAATCCTCAGGTATGGAATT+TGG + chr6.2:45880819-45880838 MS.gene018409:intron 40.0%
CAGATGAGGCAATGTAAGAT+TGG + chr6.2:45880643-45880662 MS.gene018409:CDS 40.0%
CATGTGTTGCAATACATACG+AGG - chr6.2:45881820-45881839 None:intergenic 40.0%
CATTGTCAAAAAGTGACGAC+AGG - chr6.2:45882541-45882560 None:intergenic 40.0%
CGAAGTTACTCAGAAACCTA+TGG + chr6.2:45881054-45881073 MS.gene018409:CDS 40.0%
GAGAGGAATATGGTGAAAGT+AGG + chr6.2:45881880-45881899 MS.gene018409:intron 40.0%
GCAATTCAAATGGGTCATAC+TGG - chr6.2:45880555-45880574 None:intergenic 40.0%
GCTGTTCGAGACATTATTGT+TGG + chr6.2:45880685-45880704 MS.gene018409:CDS 40.0%
GGAGTAAGACGCAATTCAAA+TGG - chr6.2:45880565-45880584 None:intergenic 40.0%
GTGAAGCAGTAAAATTCCCT+TGG - chr6.2:45880607-45880626 None:intergenic 40.0%
TCGAGGAAATCACGAACAAA+GGG - chr6.2:45880858-45880877 None:intergenic 40.0%
TGGCAAGGTAGTAGATAACA+AGG - chr6.2:45880468-45880487 None:intergenic 40.0%
TTGCTAACAATCCTCAGGTA+TGG + chr6.2:45880812-45880831 MS.gene018409:intron 40.0%
TTTCCCAAATTCCATACCTG+AGG - chr6.2:45880826-45880845 None:intergenic 40.0%
! GATTGGATTTTGGATGCAGA+AGG + chr6.2:45880660-45880679 MS.gene018409:CDS 40.0%
! TGTTGGAACTGATAACGTGT+TGG + chr6.2:45880702-45880721 MS.gene018409:CDS 40.0%
! TTGGATTTTGGATGCAGAAG+GGG + chr6.2:45880662-45880681 MS.gene018409:CDS 40.0%
! TTTGGAGCAGATGTTGATGA+AGG + chr6.2:45880995-45881014 MS.gene018409:CDS 40.0%
!! AGTTTTGATGCCATTCTGAG+CGG - chr6.2:45880767-45880786 None:intergenic 40.0%
!! CGAATAAGCTTTGGTGTCAA+CGG - chr6.2:45881570-45881589 None:intergenic 40.0%
!! TGAAAGCATTAGTTGCTCTG+GGG - chr6.2:45882700-45882719 None:intergenic 40.0%
AAGTCACCACAAGTTTGGGA+AGG + chr6.2:45882098-45882117 MS.gene018409:intron 45.0%
AGTCACCACAAGTTTGGGAA+GGG + chr6.2:45882099-45882118 MS.gene018409:intron 45.0%
CAAATGGGTCATACTGGTAC+AGG - chr6.2:45880549-45880568 None:intergenic 45.0%
CACTCTTGCTAACAATCCTC+AGG + chr6.2:45880807-45880826 MS.gene018409:CDS 45.0%
CCTCATCTGCTCATCAACTT+TGG - chr6.2:45880632-45880651 None:intergenic 45.0%
CGAGGAAATCACGAACAAAG+GGG - chr6.2:45880857-45880876 None:intergenic 45.0%
GTTTGGGAAGGGTTGTGAAT+TGG + chr6.2:45882110-45882129 MS.gene018409:intron 45.0%
TCAACATCCAGATCCATCTC+TGG - chr6.2:45880974-45880993 None:intergenic 45.0%
TGACGATGTTGTCTTGCACA+TGG + chr6.2:45882665-45882684 MS.gene018409:CDS 45.0%
! CTTTTTCTTCCGTCACCCAA+GGG + chr6.2:45880588-45880607 MS.gene018409:CDS 45.0%
! GGAACTGATAACGTGTTGGT+GGG + chr6.2:45880706-45880725 MS.gene018409:CDS 45.0%
! GTTGATGAAGGTGATGCTAC+TGG + chr6.2:45881007-45881026 MS.gene018409:CDS 45.0%
! TGGAACTGATAACGTGTTGG+TGG + chr6.2:45880705-45880724 MS.gene018409:CDS 45.0%
! TGGATTTTGGATGCAGAAGG+GGG + chr6.2:45880663-45880682 MS.gene018409:CDS 45.0%
!! CCAAAGTTGATGAGCAGATG+AGG + chr6.2:45880629-45880648 MS.gene018409:CDS 45.0%
!! AAATTTAAAGAAAAATAAAA+AGG - chr6.2:45881455-45881474 None:intergenic 5.0%
ACATCCAGATCCATCTCTGG+TGG - chr6.2:45880971-45880990 None:intergenic 50.0%
CACAACCCTTCCCAAACTTG+TGG - chr6.2:45882107-45882126 None:intergenic 50.0%
CATCCAGATCCATCTCTGGT+GGG - chr6.2:45880970-45880989 None:intergenic 50.0%
GAAGGTGATGCTACTGGAGA+TGG + chr6.2:45881013-45881032 MS.gene018409:CDS 50.0%
GAATTGCTTCCACCTGGTGT+TGG + chr6.2:45880421-45880440 MS.gene018409:CDS 50.0%
GGAAATCACGAACAAAGGGG+AGG - chr6.2:45880854-45880873 None:intergenic 50.0%
TCAACGAATCCGTTGACACC+TGG + chr6.2:45882390-45882409 MS.gene018409:intron 50.0%
TCAGAAACCTATGGGGGCTA+GGG + chr6.2:45881063-45881082 MS.gene018409:CDS 50.0%
! CCTTTTTCTTCCGTCACCCA+AGG + chr6.2:45880587-45880606 MS.gene018409:CDS 50.0%
!! CCTTGGGTGACGGAAGAAAA+AGG - chr6.2:45880590-45880609 None:intergenic 50.0%
!! GGGTGACGGAAGAAAAAGGA+CGG - chr6.2:45880586-45880605 None:intergenic 50.0%
!!! AGATTTTGAAGGCACCCTGC+AGG + chr6.2:45881138-45881157 MS.gene018409:CDS 50.0%
AAACCTATGGGGGCTAGGGA+TGG + chr6.2:45881067-45881086 MS.gene018409:CDS 55.0%
AACCTATGGGGGCTAGGGAT+GGG + chr6.2:45881068-45881087 MS.gene018409:CDS 55.0%
AGTCAGGATCCGTTGACACC+AGG - chr6.2:45882411-45882430 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG - chr6.2:45882402-45882421 None:intergenic 55.0%
CTCAGAAACCTATGGGGGCT+AGG + chr6.2:45881062-45881081 MS.gene018409:CDS 55.0%
GAAGGGATGAAGCCAACACC+AGG - chr6.2:45880436-45880455 None:intergenic 55.0%
GTTTGACTGCCCACCAGAGA+TGG + chr6.2:45880958-45880977 MS.gene018409:CDS 55.0%
! AGTGCTGCTGTTGAGCAACG+CGG + chr6.2:45881100-45881119 MS.gene018409:CDS 55.0%
! CCGTTGACACCTGGTGTCAA+CGG + chr6.2:45882399-45882418 MS.gene018409:intron 55.0%
ACCTATGGGGGCTAGGGATG+GGG + chr6.2:45881069-45881088 MS.gene018409:CDS 60.0%
CTGCCCACCAGAGATGGATC+TGG + chr6.2:45880964-45880983 MS.gene018409:CDS 60.0%
GGGATGAAGCCAACACCAGG+TGG - chr6.2:45880433-45880452 None:intergenic 60.0%
ATGGGGGCTAGGGATGGGGC+TGG + chr6.2:45881073-45881092 MS.gene018409:CDS 70.0%
GCCCCATCCCTAGCCCCCAT+AGG - chr6.2:45881073-45881092 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 45880418 45882757 45880418 ID=MS.gene018409
chr6.2 mRNA 45880418 45882757 45880418 ID=MS.gene018409.t1;Parent=MS.gene018409
chr6.2 exon 45880418 45880828 45880418 ID=MS.gene018409.t1.exon1;Parent=MS.gene018409.t1
chr6.2 CDS 45880418 45880828 45880418 ID=cds.MS.gene018409.t1;Parent=MS.gene018409.t1
chr6.2 exon 45880935 45881159 45880935 ID=MS.gene018409.t1.exon2;Parent=MS.gene018409.t1
chr6.2 CDS 45880935 45881159 45880935 ID=cds.MS.gene018409.t1;Parent=MS.gene018409.t1
chr6.2 exon 45882645 45882757 45882645 ID=MS.gene018409.t1.exon3;Parent=MS.gene018409.t1
chr6.2 CDS 45882645 45882757 45882645 ID=cds.MS.gene018409.t1;Parent=MS.gene018409.t1
Gene Sequence

>MS.gene018409

ATGGAATTGCTTCCACCTGGTGTTGGCTTCATCCCTTCTGATGAACTCCTTGTTATCTACTACCTTGCCAACAAAAATAATGAAGAGGTTCAAAATTTCAATGGTTCTGACTTGATTAAGGAGCTAAACCTGTACCAGTATGACCCATTTGAATTGCGTCTTACTCCGTCCTTTTTCTTCCGTCACCCAAGGGAATTTTACTGCTTCACTGCCAAAGTTGATGAGCAGATGAGGCAATGTAAGATTGGATTTTGGATGCAGAAGGGGGCTGTTCGAGACATTATTGTTGGAACTGATAACGTGTTGGTGGGAAAGAAGTCTCTTTTTATGTTCTATATAGGAAATTCCGCTCAGAATGGCATCAAAACTAGTTGGACTATGTACGAGTACACTCTTGCTAACAATCCTCAGGTATGGAATTTGGGAAAACTAACCTCCCCTTTGTTCGTGATTTCCTCGATGATTATTTAATGTATTAGCAACTACTAATTGTTTTTTTTTTAAAATTATTATGCAGGCTCCTTTTGTTCTTTGTCGTGTGTTTGACTGCCCACCAGAGATGGATCTGGATGTTGAGTTTGGAGCAGATGTTGATGAAGGTGATGCTACTGGAGATGGCTCTGCTAACAAGCTGAACGAAGTTACTCAGAAACCTATGGGGGCTAGGGATGGGGCTGGTACTAGTGCTGCTGTTGAGCAACGCGGTGCATCAAATTTCACAGATTTTGAAGGCACCCTGCAGGTAAAATATATTCCATTTTGATCTCTCTTTATATTAACCAATTAATGTTGTTGATCTTATTTGCAACTGATTCTTTAAAATTTCGAAAATTTTACAACTTAATCCATTCATGTGATGTATTTTTTTATTGCCCCAATCTTTGCTACTAAATGTAACATGTCAATTGTATGTATCACTCTGCACATGTATTTTTTGTTTTGTTTGTGTGTATAAATTAAGTGATAATTCTCAAAACATATAGGAATTTTGATTAGTTAATGTAGCTATTCTTACCAGATTCTTCAAATCACGTCCTTTTTATTTTTCTTTAAATTTTTTGCTATGATAAATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATGAGTTAGGATCCGTTGACACCAAAGCTTATTCGTCAGTTCTTTTAATCCAAAGGCCCATAATTAATCCATGTTTCTTTTTCTTGTGTATCATTTCTCTCACCCACTCACAATTATTGCTTTTAGTGATAAAAAAAACTCAAACTGAAAACATGGAGTTATGATACTCAACGATTCTCTTTTGCGAAAATTGTTTTTCTCTTCCCCCACTCCTATGAATATTATTCTTCTTCTTTGTATCTCCTTTCCCTCTTATTTAACTCCTCGTATGTATTGCAACACATGAAGGAAATTTATGTCAAGCTTATGATAACAATTACAATTGGAGAGGAATATGGTGAAAGTAGGAGATTGTTGATGAGTTTAATTTGCTTTTAATTTTATGTGTTTTACCATGATTGAATATGAATTAAAATAATCCTAGGATTTTATCGTTTTAAACGATTAGATGTCTACAAAATGAATCGTATGGTTTTGGTAGAATGGAAAACCTCATTACAATTTAATTTTATTATTTACAGCATAAACAATGAAATCTCAACAAAGTCACCACAAGTTTGGGAAGGGTTGTGAATTGGTTCAATTAGCATGTAGGAGAAGAGATCATTCTAAACAGTACTATCTTAAAAGTATTTTAATTATTCAGATATGGAGTATTTCAATTTTGTAGACAAGAGAACAAAGAGAATTATGATAGGATTATGCTTCCAATTTGGGTTTGGTAATCATTAAAAACAATAATAGTGTGTGATTGAAAAAAAGGATACGTAATAAATAAAAATGTGACACTATTATTAACCTTTGATTAAATAAAATCAACGGTTGAGATTTGGTGTCAACGAATCCGTTGACACCTGGTGTCAACGGATCCTGACTCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTGTTGTTCCTGTCGTCACTTTTTGACAATGCAACTTTTCATTTCATATTATGGTAAAGACCAGAATGTATTGTTGAAGTATTGAATTGATTTGCTTGTTTTTGGTGTTTATCAGGCGAGTTATGCTGCATTTCTTGACGATGTTGTCTTGCACATGGAAGCTATGACCCCAGAGCAACTAATGCTTTCAATTATGGATGACGATTTTCTTGAAATAGCCGATCTTGT
Protein sequence

>MS.gene018409.t1

MELLPPGVGFIPSDELLVIYYLANKNNEEVQNFNGSDLIKELNLYQYDPFELRLTPSFFFRHPREFYCFTAKVDEQMRQCKIGFWMQKGAVRDIIVGTDNVLVGKKSLFMFYIGNSAQNGIKTSWTMYEYTLANNPQAPFVLCRVFDCPPEMDLDVEFGADVDEGDATGDGSANKLNEVTQKPMGARDGAGTSAAVEQRGASNFTDFEGTLQASYAAFLDDVVLHMEAMTPEQLMLSIMDDDFLEIADL