AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018411.t1 MTR_1g047060 53.125 96 36 2 111 206 3 89 7.10e-24 92.4
MS.gene018411.t1 MTR_4g094302 28.108 185 109 7 5 175 12 186 2.80e-15 72.4
MS.gene018411.t1 MTR_7g105170 28.161 174 101 7 1 152 1 172 1.02e-14 72.0
MS.gene018411.t1 MTR_4g101680 32.903 155 82 6 5 145 8 154 1.25e-14 72.8
MS.gene018411.t1 MTR_4g094302 30.709 127 80 4 5 131 12 130 1.43e-14 69.7
MS.gene018411.t1 MTR_5g021710 31.169 154 86 6 5 145 9 155 1.61e-14 72.4
MS.gene018411.t1 MTR_8g059170 35.766 137 70 7 5 133 15 141 2.21e-14 71.6
MS.gene018411.t1 MTR_2g080010 31.618 136 81 4 5 134 16 145 4.64e-14 71.2
MS.gene018411.t1 MTR_8g094580 34.074 135 74 7 5 133 8 133 7.77e-14 69.7
MS.gene018411.t1 MTR_1g008740 32.468 154 85 7 5 145 28 175 2.81e-13 68.9
MS.gene018411.t1 MTR_2g079990 31.410 156 82 8 5 145 17 162 3.14e-13 68.6
MS.gene018411.t1 MTR_1g008740 32.468 154 85 7 5 145 14 161 3.46e-13 68.6
MS.gene018411.t1 MTR_4g035590 30.460 174 100 8 5 165 9 174 4.64e-13 68.2
MS.gene018411.t1 MTR_2g079990 34.058 138 73 7 5 134 17 144 4.99e-13 68.2
MS.gene018411.t1 MTR_2g086880 29.530 149 80 7 6 142 20 155 5.66e-13 68.6
MS.gene018411.t1 MTR_2g086880 29.530 149 80 7 6 142 20 155 5.95e-13 68.2
MS.gene018411.t1 MTR_3g109340 31.169 154 86 7 5 145 23 169 8.75e-13 67.4
MS.gene018411.t1 MTR_3g096920 33.577 137 72 8 5 133 8 133 1.30e-12 66.2
MS.gene018411.t1 MTR_3g064580 30.000 160 82 8 5 145 7 155 1.44e-12 67.4
MS.gene018411.t1 MTR_3g096920 33.577 137 72 8 5 133 8 133 1.85e-12 66.2
MS.gene018411.t1 MTR_1g069805 32.026 153 83 9 5 145 11 154 7.35e-12 63.9
MS.gene018411.t1 MTR_2g064090 30.657 137 81 6 5 134 7 136 1.01e-11 64.3
MS.gene018411.t1 MTR_6g011860 30.827 133 77 6 6 131 17 141 1.78e-11 63.5
MS.gene018411.t1 MTR_3g088110 32.353 136 75 6 5 133 8 133 2.03e-11 62.8
MS.gene018411.t1 MTR_8g023860 28.846 156 87 7 1 142 9 154 2.10e-11 63.5
MS.gene018411.t1 MTR_7g097090 32.680 153 82 9 5 145 11 154 2.48e-11 62.8
MS.gene018411.t1 MTR_2g068880 32.867 143 85 6 2 137 20 158 2.95e-11 62.8
MS.gene018411.t1 MTR_1g097300 32.593 135 73 6 6 131 21 146 3.27e-11 63.2
MS.gene018411.t1 MTR_5g040420 30.075 133 79 4 6 131 16 141 3.36e-11 62.8
MS.gene018411.t1 MTR_4g134460 34.328 134 71 7 6 131 56 180 3.73e-11 62.8
MS.gene018411.t1 MTR_4g075980 29.530 149 90 6 6 145 17 159 4.26e-11 62.0
MS.gene018411.t1 MTR_3g109340 29.412 153 89 7 5 145 23 168 4.53e-11 62.4
MS.gene018411.t1 MTR_8g093790 29.310 174 97 9 5 174 11 162 5.34e-11 60.5
MS.gene018411.t1 MTR_5g014300 26.452 155 95 6 5 144 7 157 8.36e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018411.t1 AT4G36160 31.818 154 85 6 5 145 11 157 8.21e-16 76.3
MS.gene018411.t1 AT4G36160 31.818 154 85 6 5 145 11 157 8.21e-16 76.3
MS.gene018411.t1 AT4G36160 31.818 154 85 6 5 145 15 161 8.45e-16 76.3
MS.gene018411.t1 AT1G71930 29.677 155 93 5 5 148 10 159 1.12e-15 75.5
MS.gene018411.t1 AT1G71930 29.677 155 93 5 5 148 10 159 1.12e-15 75.5
MS.gene018411.t1 AT4G27410 31.677 161 85 8 5 150 15 165 2.22e-15 74.3
MS.gene018411.t1 AT2G18060 31.169 154 86 6 5 145 10 156 4.60e-15 73.9
MS.gene018411.t1 AT2G18060 31.169 154 86 6 5 145 10 156 4.60e-15 73.9
MS.gene018411.t1 AT4G27410 29.379 177 85 9 5 150 15 182 4.57e-14 70.9
MS.gene018411.t1 AT4G17980 30.435 138 80 4 5 133 7 137 1.25e-13 68.9
MS.gene018411.t1 AT4G17980 30.435 138 80 4 5 133 7 137 1.68e-13 68.9
MS.gene018411.t1 AT5G08790 28.972 214 117 11 5 196 8 208 1.93e-13 68.9
MS.gene018411.t1 AT3G44290 25.874 143 93 5 6 142 16 151 3.92e-13 67.0
MS.gene018411.t1 AT3G44290 25.874 143 93 5 6 142 16 151 3.92e-13 68.2
MS.gene018411.t1 AT5G63790 36.765 136 69 8 5 133 51 176 4.93e-13 67.8
MS.gene018411.t1 AT3G15500 32.593 135 75 6 5 132 15 140 5.19e-13 67.8
MS.gene018411.t1 AT5G63790 36.765 136 69 8 5 133 61 186 5.83e-13 67.8
MS.gene018411.t1 AT5G64530 33.077 130 69 5 5 131 4 118 1.03e-12 64.7
MS.gene018411.t1 AT1G52890 33.094 139 69 7 5 132 15 140 1.51e-12 66.6
MS.gene018411.t1 AT1G77450 35.766 137 69 7 5 133 11 136 1.98e-12 65.5
MS.gene018411.t1 AT1G01720 33.577 137 72 6 5 133 8 133 2.49e-12 65.5
MS.gene018411.t1 AT5G64530 27.604 192 106 5 5 175 4 183 2.64e-12 63.9
MS.gene018411.t1 AT5G17260 28.025 157 89 7 5 145 7 155 4.30e-12 65.9
MS.gene018411.t1 AT4G28530 29.651 172 94 6 5 153 11 178 5.43e-12 65.1
MS.gene018411.t1 AT5G50820 34.074 135 73 7 5 134 18 141 5.69e-12 63.2
MS.gene018411.t1 AT3G29035 32.090 134 75 6 5 131 25 149 6.02e-12 64.7
MS.gene018411.t1 AT3G03200 28.662 157 88 7 5 145 7 155 6.56e-12 65.1
MS.gene018411.t1 AT5G64060 27.803 223 123 10 6 211 8 209 7.67e-12 64.7
MS.gene018411.t1 AT4G10350 31.210 157 84 8 5 145 10 158 8.84e-12 64.3
MS.gene018411.t1 AT5G04395 31.293 147 81 6 5 134 29 172 9.31e-12 62.4
MS.gene018411.t1 AT5G46590 30.147 136 84 5 5 134 7 137 9.90e-12 63.9
MS.gene018411.t1 AT5G39610 30.573 157 84 8 5 145 21 168 9.91e-12 63.9
MS.gene018411.t1 AT1G26870 29.231 130 80 4 6 129 18 141 1.98e-11 63.5
MS.gene018411.t1 AT5G61430 29.697 165 92 8 1 150 14 169 2.48e-11 63.2
MS.gene018411.t1 AT2G02450 30.769 156 86 8 6 148 53 199 4.06e-11 62.8
MS.gene018411.t1 AT2G02450 30.769 156 86 8 6 148 53 199 4.96e-11 62.4
MS.gene018411.t1 AT1G33280 29.870 154 87 7 5 145 9 154 7.01e-11 61.6

Find 56 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACTTATGCTTGCAATTA+TGG 0.158474 6.2:+46042660 MS.gene018411:CDS
ATGGATCTAGACTCTGAATT+TGG 0.204240 6.2:+46041439 MS.gene018411:CDS
GGCATTGTAAGACTGGATTT+TGG 0.240614 6.2:+46041110 MS.gene018411:CDS
CCATGGTTCTGACCGGATTA+AGG 0.270785 6.2:+46040976 MS.gene018411:CDS
CCTCCTCGGCTCCTCAGTTT+TGG 0.293397 6.2:-46041089 None:intergenic
TGGATCTAGACTCTGAATTT+GGG 0.333596 6.2:+46041440 MS.gene018411:CDS
CCTTGTGTGAGGGAAGAAAA+AGG 0.356880 6.2:-46041047 None:intergenic
TGTTGGAGCTGATGACGTTT+TGG 0.393392 6.2:+46041162 MS.gene018411:CDS
AAAACACAGCAAACAACAAA+AGG 0.433446 6.2:-46041400 None:intergenic
TGAAGGAACTCAGCAACTTA+AGG 0.444240 6.2:+46041522 MS.gene018411:CDS
ACAGTCTCAGCTCCTTAATC+CGG 0.483053 6.2:-46040988 None:intergenic
CCGAGGAGGCATTGTAAGAC+TGG 0.484776 6.2:+46041103 MS.gene018411:CDS
TGAGCAAGATGTAATTCAAA+AGG 0.487325 6.2:-46041022 None:intergenic
ACTCAGCAACTTAAGGAGGC+TGG 0.487489 6.2:+46041529 MS.gene018411:CDS
TTGTTCATCGGAAGGGAAGA+AGG 0.494722 6.2:-46040906 None:intergenic
CTCAGCAACTTAAGGAGGCT+GGG 0.496847 6.2:+46041530 MS.gene018411:CDS
GTTGGTGTTGGTGTTGAGCA+AGG 0.501020 6.2:+46041571 MS.gene018411:CDS
GAGTCTAGATCCATCCCTCT+AGG 0.505901 6.2:-46041430 None:intergenic
GTAATTCAAAAGGATCATAC+TGG 0.506764 6.2:-46041012 None:intergenic
GGCTACTCAAGCCACTCCTC+AGG 0.507680 6.2:+46041612 MS.gene018411:CDS
TCTAGTGCAGGTGTTGGTGT+TGG 0.508728 6.2:+46041559 MS.gene018411:CDS
GAAGAGGTTCAGAATTTCCA+TGG 0.526667 6.2:+46040959 MS.gene018411:CDS
AGAACGCGATCAAAACTAGT+TGG 0.526855 6.2:+46041230 MS.gene018411:CDS
GCTGTTAGAGACATTACTGT+TGG 0.528259 6.2:+46041145 MS.gene018411:CDS
CACTCTTGTTAACAATCCTC+AGG 0.528444 6.2:+46041267 MS.gene018411:CDS
TCTGATGACAAGGCGAATGA+AGG 0.528665 6.2:+46041505 MS.gene018411:CDS
AGAATTTCCATGGTTCTGAC+CGG 0.533129 6.2:+46040969 MS.gene018411:CDS
ACCTTCATCGACATCAGATA+AGG 0.533255 6.2:-46041464 None:intergenic
GCAATGGATTTGCCTCCACC+TGG 0.541606 6.2:+46040878 None:intergenic
CCAGTCTTACAATGCCTCCT+CGG 0.543084 6.2:-46041103 None:intergenic
CCACATGGAAGCTATGACGC+CGG 0.546830 6.2:+46042636 MS.gene018411:CDS
ATTGCAAGCATAAGTTGCTC+CGG 0.553025 6.2:-46042655 None:intergenic
AGGAGTGGCTTGAGTAGCCA+TGG 0.558328 6.2:-46041608 None:intergenic
AAGAAGGCAACACCAGGTGG+AGG 0.559720 6.2:-46040890 None:intergenic
GCTGGGACTAGTTCTAGTGC+AGG 0.570005 6.2:+46041547 MS.gene018411:CDS
AGTCTAGATCCATCCCTCTA+GGG 0.570873 6.2:-46041429 None:intergenic
AGGTGATGCATCGCATTCCA+TGG 0.574376 6.2:+46041591 MS.gene018411:CDS
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 6.2:-46041058 None:intergenic
CCTTAATCCGGTCAGAACCA+TGG 0.580530 6.2:-46040976 None:intergenic
ACTAGTTCTAGTGCAGGTGT+TGG 0.583083 6.2:+46041553 MS.gene018411:CDS
GAAGGGAAGAAGGCAACACC+AGG 0.588550 6.2:-46040896 None:intergenic
GCCTTATCTGATGTCGATGA+AGG 0.589295 6.2:+46041463 MS.gene018411:CDS
GGGAAGAAGGCAACACCAGG+TGG 0.590123 6.2:-46040893 None:intergenic
GTAGCTAACAAGTTGTTCAT+CGG 0.592426 6.2:-46040918 None:intergenic
TAACAAGTTGTTCATCGGAA+GGG 0.594831 6.2:-46040913 None:intergenic
CTAACAAGTTGTTCATCGGA+AGG 0.597677 6.2:-46040914 None:intergenic
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 6.2:-46041057 None:intergenic
CTGCCAAAACTGAGGAGCCG+AGG 0.619650 6.2:+46041086 MS.gene018411:CDS
CCGGCGTCATAGCTTCCATG+TGG 0.629672 6.2:-46042636 None:intergenic
TGACTATGTTGTGTCCCACA+TGG 0.631632 6.2:+46042621 MS.gene018411:CDS
GGATCTAGACTCTGAATTTG+GGG 0.633562 6.2:+46041441 MS.gene018411:CDS
CCAAAACTGAGGAGCCGAGG+AGG 0.634705 6.2:+46041089 MS.gene018411:CDS
CGGCGTCATAGCTTCCATGT+GGG 0.637767 6.2:-46042635 None:intergenic
CTGCTTCACTGCCAAAACTG+AGG 0.647730 6.2:+46041078 MS.gene018411:CDS
AGGAACTCAGCAACTTAAGG+AGG 0.651240 6.2:+46041525 MS.gene018411:CDS
TGATGACGACTCTGATGACA+AGG 0.678157 6.2:+46041495 MS.gene018411:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATATAAATAATT+GGG + chr6.2:46041371-46041390 MS.gene018411:intron 0.0%
!!! TTTTTTTTAATATAAATAAT+TGG + chr6.2:46041370-46041389 MS.gene018411:intron 0.0%
!! AAACTTAAAGAAAAATAAAA+AGG - chr6.2:46042332-46042351 None:intergenic 10.0%
!! TACATATAATAAACAAAAAC+AGG - chr6.2:46041740-46041759 None:intergenic 15.0%
!!! ATTTTTCTTTAAGTTTTTTG+TGG + chr6.2:46042336-46042355 MS.gene018411:intron 15.0%
!! GTTTGATATTGATGTTTATT+AGG + chr6.2:46042579-46042598 MS.gene018411:intron 20.0%
!! TATTCAAAACCTTTATGTAT+TGG + chr6.2:46041944-46041963 MS.gene018411:intron 20.0%
!! TCGATGATTAATTTATGTAT+TGG + chr6.2:46041334-46041353 MS.gene018411:intron 20.0%
!! TTTAATATAAATAATTGGGC+AGG + chr6.2:46041375-46041394 MS.gene018411:intron 20.0%
!!! ACATGTTTTTTTTTCCTTTT+TGG + chr6.2:46042220-46042239 MS.gene018411:intron 20.0%
!!! ATTGAAATATATTTTACCTG+AGG - chr6.2:46041631-46041650 None:intergenic 20.0%
!!! CATAATTTTTGATACAATTG+TGG - chr6.2:46042059-46042078 None:intergenic 20.0%
!!! CATCTTTTCATGTAATTTTA+TGG + chr6.2:46042518-46042537 MS.gene018411:intron 20.0%
!!! GATTAATTTATGTATTGGTA+AGG + chr6.2:46041339-46041358 MS.gene018411:intron 20.0%
!!! GTTTTGAATAACAACAAATA+TGG - chr6.2:46041934-46041953 None:intergenic 20.0%
!!! TTAATTTGTTACATGTTTTG+AGG - chr6.2:46042268-46042287 None:intergenic 20.0%
! ATATGTATTTCACTTTCTGT+TGG + chr6.2:46041753-46041772 MS.gene018411:intron 25.0%
! CATAAATAATCCAAACACAA+TGG - chr6.2:46042005-46042024 None:intergenic 25.0%
! CATGAAAATCATTGATATTG+TGG - chr6.2:46041903-46041884 None:intergenic 25.0%
! GAAAAACTACCAATACATAA+AGG - chr6.2:46041956-46041975 None:intergenic 25.0%
! TTAATTTCTACACACCAAAA+AGG - chr6.2:46042237-46042256 None:intergenic 25.0%
!! AATAAAAAGGACATGTTTTG+AGG - chr6.2:46042319-46042338 None:intergenic 25.0%
!! CTTTTCATGTAATTTTATGG+TGG + chr6.2:46042521-46042540 MS.gene018411:intron 25.0%
!! TCTCTCTTCATTTTCTATAT+AGG + chr6.2:46041196-46041215 MS.gene018411:CDS 25.0%
!!! TTATGTATTGGTAGTTTTTC+TGG + chr6.2:46041956-46041975 MS.gene018411:intron 25.0%
AAAACACAGCAAACAACAAA+AGG - chr6.2:46041403-46041422 None:intergenic 30.0%
AACTCAATTCATTCATGTGA+TGG + chr6.2:46042150-46042169 MS.gene018411:intron 30.0%
ACAATTGTGGATGTAGAATT+CGG - chr6.2:46042046-46042065 None:intergenic 30.0%
GTAATTCAAAAGGATCATAC+TGG - chr6.2:46041015-46041034 None:intergenic 30.0%
TCGATGAAATAACGAACATA+CGG - chr6.2:46041318-46041337 None:intergenic 30.0%
TGAGCAAGATGTAATTCAAA+AGG - chr6.2:46041025-46041044 None:intergenic 30.0%
TGTAAAATTCAGTTGCAAAG+AGG - chr6.2:46042131-46042150 None:intergenic 30.0%
TGTGACCATGATTTAAAAGT+TGG - chr6.2:46041848-46041867 None:intergenic 30.0%
! AAGCATTGTAAAATTGTTGC+CGG - chr6.2:46041680-46041699 None:intergenic 30.0%
! AATATATTTTACCTGAGGAG+TGG - chr6.2:46041626-46041645 None:intergenic 30.0%
! CATGACCAACTTTTAAATCA+TGG + chr6.2:46041840-46041859 MS.gene018411:intron 30.0%
!!! AACCTCTTCATTGTTTTTGT+TGG - chr6.2:46040948-46040967 None:intergenic 30.0%
AGAGGATCAACAACATTAAC+AGG - chr6.2:46042113-46042132 None:intergenic 35.0%
ATATTGTGGCTGACATATGA+TGG - chr6.2:46041802-46041821 None:intergenic 35.0%
ATGGATCTAGACTCTGAATT+TGG + chr6.2:46041439-46041458 MS.gene018411:CDS 35.0%
GCAACTTATGCTTGCAATTA+TGG + chr6.2:46042660-46042679 MS.gene018411:CDS 35.0%
GTAGCTAACAAGTTGTTCAT+CGG - chr6.2:46040921-46040940 None:intergenic 35.0%
TAACAAGTTGTTCATCGGAA+GGG - chr6.2:46040916-46040935 None:intergenic 35.0%
TGCCAACAAAAACAATGAAG+AGG + chr6.2:46040943-46040962 MS.gene018411:CDS 35.0%
TGGATCTAGACTCTGAATTT+GGG + chr6.2:46041440-46041459 MS.gene018411:CDS 35.0%
! AATCCTCAGGTATGTCATTT+GGG + chr6.2:46041280-46041299 MS.gene018411:intron 35.0%
!!! CTCGATATTTATTTTGTCGC+CGG + chr6.2:46041658-46041677 MS.gene018411:intron 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr6.2:46040943-46040962 None:intergenic 35.0%
ACCTTCATCGACATCAGATA+AGG - chr6.2:46041467-46041486 None:intergenic 40.0%
AGAACGCGATCAAAACTAGT+TGG + chr6.2:46041230-46041249 MS.gene018411:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr6.2:46041060-46041079 None:intergenic 40.0%
ATTGCAAGCATAAGTTGCTC+CGG - chr6.2:46042658-46042677 None:intergenic 40.0%
CAATCCTCAGGTATGTCATT+TGG + chr6.2:46041279-46041298 MS.gene018411:intron 40.0%
CACTCTTGTTAACAATCCTC+AGG + chr6.2:46041267-46041286 MS.gene018411:CDS 40.0%
CCAAACACAATGGAGCTATT+TGG - chr6.2:46041995-46042014 None:intergenic 40.0%
CCAAATAGCTCCATTGTGTT+TGG + chr6.2:46041992-46042011 MS.gene018411:intron 40.0%
CTAACAAGTTGTTCATCGGA+AGG - chr6.2:46040917-46040936 None:intergenic 40.0%
GAAGAGGTTCAGAATTTCCA+TGG + chr6.2:46040959-46040978 MS.gene018411:CDS 40.0%
GCTGTTAGAGACATTACTGT+TGG + chr6.2:46041145-46041164 MS.gene018411:CDS 40.0%
GGATCTAGACTCTGAATTTG+GGG + chr6.2:46041441-46041460 MS.gene018411:CDS 40.0%
TGAAGGAACTCAGCAACTTA+AGG + chr6.2:46041522-46041541 MS.gene018411:CDS 40.0%
TTTCCCAAATGACATACCTG+AGG - chr6.2:46041286-46041305 None:intergenic 40.0%
! ACTGGATTTTGGATGCAGAA+GGG + chr6.2:46041121-46041140 MS.gene018411:CDS 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr6.2:46041048-46041067 MS.gene018411:CDS 40.0%
! GGCATTGTAAGACTGGATTT+TGG + chr6.2:46041110-46041129 MS.gene018411:CDS 40.0%
!! AGAATTTCCATGGTTCTGAC+CGG + chr6.2:46040969-46040988 MS.gene018411:CDS 40.0%
!!! AGGACATGTTTTGAGGAATC+TGG - chr6.2:46042312-46042331 None:intergenic 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG - chr6.2:46041228-46041247 None:intergenic 40.0%
ACAGTCTCAGCTCCTTAATC+CGG - chr6.2:46040991-46041010 None:intergenic 45.0%
AGGAACTCAGCAACTTAAGG+AGG + chr6.2:46041525-46041544 MS.gene018411:CDS 45.0%
AGTCTAGATCCATCCCTCTA+GGG - chr6.2:46041432-46041451 None:intergenic 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr6.2:46041061-46041080 None:intergenic 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr6.2:46041050-46041069 None:intergenic 45.0%
GCCTTATCTGATGTCGATGA+AGG + chr6.2:46041463-46041482 MS.gene018411:CDS 45.0%
TCTGATGACAAGGCGAATGA+AGG + chr6.2:46041505-46041524 MS.gene018411:CDS 45.0%
TGACTATGTTGTGTCCCACA+TGG + chr6.2:46042621-46042640 MS.gene018411:CDS 45.0%
TTGTGGCTGACATATGATGG+AGG - chr6.2:46041799-46041818 None:intergenic 45.0%
TTGTTCATCGGAAGGGAAGA+AGG - chr6.2:46040909-46040928 None:intergenic 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr6.2:46041047-46041066 MS.gene018411:CDS 45.0%
! GACTGGATTTTGGATGCAGA+AGG + chr6.2:46041120-46041139 MS.gene018411:CDS 45.0%
! TGATGACGACTCTGATGACA+AGG + chr6.2:46041495-46041514 MS.gene018411:CDS 45.0%
!! ACTAGTTCTAGTGCAGGTGT+TGG + chr6.2:46041553-46041572 MS.gene018411:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG - chr6.2:46041227-46041246 None:intergenic 45.0%
!! GTGTTTTTGACTGCCCTAGA+GGG + chr6.2:46041416-46041435 MS.gene018411:CDS 45.0%
!! TGTGTTTTTGACTGCCCTAG+AGG + chr6.2:46041415-46041434 MS.gene018411:CDS 45.0%
!! TGTTGGAGCTGATGACGTTT+TGG + chr6.2:46041162-46041181 MS.gene018411:CDS 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG - chr6.2:46041229-46041248 None:intergenic 45.0%
ACTCAGCAACTTAAGGAGGC+TGG + chr6.2:46041529-46041548 MS.gene018411:CDS 50.0%
AGGTGATGCATCGCATTCCA+TGG + chr6.2:46041591-46041610 MS.gene018411:CDS 50.0%
CCAGTCTTACAATGCCTCCT+CGG - chr6.2:46041106-46041125 None:intergenic 50.0%
CCTTAATCCGGTCAGAACCA+TGG - chr6.2:46040979-46040998 None:intergenic 50.0%
CTCAGCAACTTAAGGAGGCT+GGG + chr6.2:46041530-46041549 MS.gene018411:CDS 50.0%
CTGCTTCACTGCCAAAACTG+AGG + chr6.2:46041078-46041097 MS.gene018411:CDS 50.0%
GAGTCTAGATCCATCCCTCT+AGG - chr6.2:46041433-46041452 None:intergenic 50.0%
!! CCATGGTTCTGACCGGATTA+AGG + chr6.2:46040976-46040995 MS.gene018411:CDS 50.0%
!! GGAGCTGATGACGTTTTGGT+GGG + chr6.2:46041166-46041185 MS.gene018411:CDS 50.0%
!! GTTGGTGTTGGTGTTGAGCA+AGG + chr6.2:46041571-46041590 MS.gene018411:CDS 50.0%
!! TCTAGTGCAGGTGTTGGTGT+TGG + chr6.2:46041559-46041578 MS.gene018411:CDS 50.0%
!! TGGAGCTGATGACGTTTTGG+TGG + chr6.2:46041165-46041184 MS.gene018411:CDS 50.0%
!! TTTTGACTGCCCTAGAGGGA+TGG + chr6.2:46041420-46041439 MS.gene018411:CDS 50.0%
AAGAAGGCAACACCAGGTGG+AGG - chr6.2:46040893-46040912 None:intergenic 55.0%
AGGAGTGGCTTGAGTAGCCA+TGG - chr6.2:46041611-46041630 None:intergenic 55.0%
CCACATGGAAGCTATGACGC+CGG + chr6.2:46042636-46042655 MS.gene018411:CDS 55.0%
CGGCGTCATAGCTTCCATGT+GGG - chr6.2:46042638-46042657 None:intergenic 55.0%
GAAGGGAAGAAGGCAACACC+AGG - chr6.2:46040899-46040918 None:intergenic 55.0%
!! CCGAGGAGGCATTGTAAGAC+TGG + chr6.2:46041103-46041122 MS.gene018411:CDS 55.0%
!! GCTGGGACTAGTTCTAGTGC+AGG + chr6.2:46041547-46041566 MS.gene018411:CDS 55.0%
CCAAAACTGAGGAGCCGAGG+AGG + chr6.2:46041089-46041108 MS.gene018411:CDS 60.0%
CCGGCGTCATAGCTTCCATG+TGG - chr6.2:46042639-46042658 None:intergenic 60.0%
CTGCCAAAACTGAGGAGCCG+AGG + chr6.2:46041086-46041105 MS.gene018411:CDS 60.0%
GGCTACTCAAGCCACTCCTC+AGG + chr6.2:46041612-46041631 MS.gene018411:CDS 60.0%
GGGAAGAAGGCAACACCAGG+TGG - chr6.2:46040896-46040915 None:intergenic 60.0%
! CCTCCTCGGCTCCTCAGTTT+TGG - chr6.2:46041092-46041111 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 46040881 46042702 46040881 ID=MS.gene018411
chr6.2 mRNA 46040881 46042702 46040881 ID=MS.gene018411.t1;Parent=MS.gene018411
chr6.2 exon 46040881 46041288 46040881 ID=MS.gene018411.t1.exon1;Parent=MS.gene018411.t1
chr6.2 CDS 46040881 46041288 46040881 ID=cds.MS.gene018411.t1;Parent=MS.gene018411.t1
chr6.2 exon 46041397 46041633 46041397 ID=MS.gene018411.t1.exon2;Parent=MS.gene018411.t1
chr6.2 CDS 46041397 46041633 46041397 ID=cds.MS.gene018411.t1;Parent=MS.gene018411.t1
chr6.2 exon 46042601 46042702 46042601 ID=MS.gene018411.t1.exon3;Parent=MS.gene018411.t1
chr6.2 CDS 46042601 46042702 46042601 ID=cds.MS.gene018411.t1;Parent=MS.gene018411.t1
Gene Sequence

>MS.gene018411

ATGGATTTGCCTCCACCTGGTGTTGCCTTCTTCCCTTCCGATGAACAACTTGTTAGCTACCTTGCCAACAAAAACAATGAAGAGGTTCAGAATTTCCATGGTTCTGACCGGATTAAGGAGCTGAGACTGTACCAGTATGATCCTTTTGAATTACATCTTGCTCAGTCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAACTGAGGAGCCGAGGAGGCATTGTAAGACTGGATTTTGGATGCAGAAGGGAGCTGTTAGAGACATTACTGTTGGAGCTGATGACGTTTTGGTGGGAAAGAAGTCTCTCTTCATTTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGTTGGACTATGTACGAGTACACTCTTGTTAACAATCCTCAGGTATGTCATTTGGGAAAACTAACTTTCCGTATGTTCGTTATTTCATCGATGATTAATTTATGTATTGGTAAGGACTAACTATTTTTTTTAATATAAATAATTGGGCAGGCTCCTTTTGTTGTTTGCTGTGTTTTTGACTGCCCTAGAGGGATGGATCTAGACTCTGAATTTGGGGCCTTATCTGATGTCGATGAAGGTGATGTTGCTGATGACGACTCTGATGACAAGGCGAATGAAGGAACTCAGCAACTTAAGGAGGCTGGGACTAGTTCTAGTGCAGGTGTTGGTGTTGGTGTTGAGCAAGGTGATGCATCGCATTCCATGGCTACTCAAGCCACTCCTCAGGTAAAATATATTTCAATTTGATCTCTCGATATTTATTTTGTCGCCGGCAACAATTTTACAATGCTTAAATTTGTTTGAAATTTAAATTCAAAATTGTTTTTTGCCTGTTTTTGTTTATTATATGTATTTCACTTTCTGTTGGACATAAGTTTTAATAAAATACCTCCATCATATGTCAGCCACAATATCAATGATTTTCATGTATGCATGACCAACTTTTAAATCATGGTCACACTAATTGTTGTAATTGCATGAAAATCATTGATATTGCAAATAATAATGATCAAGCTGCATTAGCCATATTTGTTGTTATTCAAAACCTTTATGTATTGGTAGTTTTTCTGGTAGATGTTTGAATCCAAATAGCTCCATTGTGTTTGGATTATTTATGTTTTGCAGTTGTCAATTACCGAATTCTACATCCACAATTGTATCAAAAATTATGTTTAATTATTGAAGTCAACATTTGCAGTTAACCTGTTAATGTTGTTGATCCTCTTTGCAACTGAATTTTACAACTCAATTCATTCATGTGATGGTATTTTTTTTATTTTTTTTGATCAATTTTATTGAATGTATCACTCTGACATGTTTTTTTTTCCTTTTTGGTGTGTAGAAATTAAGTGATGATCCTCAAAACATGTAACAAATTAATAGTTAACATAGCTATTCTAACCAGATTCCTCAAAACATGTCCTTTTTATTTTTCTTTAAGTTTTTTGTGGTATTAAATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATGATCATCATCATCATCATCATCATCACTTTTTGACAAAGCATCTTTTCATGTAATTTTATGGTGGAAAAATAAAGTGTTGCTGAAATATTGAATTTCTTTGTTTGATATTGATGTTTATTAGGCGAGTTATACTGCATTTCTTGACTATGTTGTGTCCCACATGGAAGCTATGACGCCGGAGCAACTTATGCTTGCAATTATGGATGAGAAAGATTTTATTTAA
Protein sequence

>MS.gene018411.t1

MDLPPPGVAFFPSDEQLVSYLANKNNEEVQNFHGSDRIKELRLYQYDPFELHLAQSFFFPHTREFYCFTAKTEEPRRHCKTGFWMQKGAVRDITVGADDVLVGKKSLFIFYIGNSPQNAIKTSWTMYEYTLVNNPQAPFVVCCVFDCPRGMDLDSEFGALSDVDEGDVADDDSDDKANEGTQQLKEAGTSSSAGVGVGVEQGDASHSMATQATPQASYTAFLDYVVSHMEAMTPEQLMLAIMDEKDFI