AlfalfaGEDB | MS.gene018540

M. sativa cultivar XinJiangDaYe / MS.gene018540

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018540.t1	XP_013450702.1	70.2	131	39	0	1	131	1	131	4.50E-48	200.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018540.t1	O23659	35.4	113	65	2	24	128	199	311	2.4e-13	76.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018540.t1	A0A072UG20	70.2	131	39	0	1	131	1	131	3.3e-48	200.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene018540.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018540.t1	MTR_6g004120	70.229	131	39	0	1	131	1	131	3.51e-65	195
MS.gene018540.t1	MTR_1g040600	45.695	151	55	4	3	128	5	153	4.83e-32	111
MS.gene018540.t1	MTR_1g045700	50.893	112	51	3	23	130	111	222	9.43e-30	107
MS.gene018540.t1	MTR_1g046880	38.889	162	62	5	5	129	9	170	1.78e-26	97.8
MS.gene018540.t1	MTR_2g058520	44.348	115	56	2	23	129	62	176	1.65e-25	95.5
MS.gene018540.t1	MTR_1g046720	43.966	116	58	3	21	129	2	117	2.52e-25	93.2
MS.gene018540.t1	MTR_1g046550	45.763	118	58	4	18	129	145	262	3.31e-25	96.7
MS.gene018540.t1	MTR_1g045740	41.322	121	63	3	22	134	144	264	3.61e-24	94.4
MS.gene018540.t1	MTR_1g045720	43.966	116	57	3	22	129	144	259	6.93e-24	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018540.t1	AT1G78640	41.228	114	58	2	25	129	154	267	1.50e-19	82.0
MS.gene018540.t1	AT2G33720	35.398	113	65	2	24	128	199	311	2.03e-16	74.3
MS.gene018540.t1	AT1G78635	37.705	122	65	4	26	139	121	239	5.51e-15	69.3
MS.gene018540.t1	AT4G02870	32.759	116	62	4	26	131	191	300	3.40e-11	59.7

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Find 22 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAGGCTTAAAGCA+AGG	0.562720	7.4:-10015249	MS.gene018540:CDS
AAAGAAGAGGCTTAAAGCAA+GGG	0.562567	7.4:-10015248	MS.gene018540:CDS
AAGAAGAGGCTTAAAGCAAG+GGG	0.637026	7.4:-10015247	MS.gene018540:CDS
AGGAATTCGAGCTGAAATAT+GGG	0.489554	7.4:-10015361	MS.gene018540:CDS
CAAAAGTCTTCTCATACGGC+CGG	0.580656	7.4:+10015443	None:intergenic
CCAACAAAAGTCTTCTCATA+CGG	0.561709	7.4:+10015439	None:intergenic
CTCAAATTCAAGAGATTGTC+TGG	0.348648	7.4:-10015312	MS.gene018540:CDS
CTTGAATTTGAGAACGTGCA+TGG	0.514512	7.4:+10015323	None:intergenic
GAACAGTAAAATTGAAGAAT+CGG	0.427975	7.4:+10015193	None:intergenic
GACACACTCCTAGAGATAAA+TGG	0.428020	7.4:+10015523	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACAAGTTTGTAAAAAGAAG+AGG	-	chr7.4:10015446-10015465	MS.gene018540:CDS	30.0%
AAAAGAAGAGGCTTAAAGCA+AGG	-	chr7.4:10015458-10015477	MS.gene018540:CDS	35.0%
AAAGAAGAGGCTTAAAGCAA+GGG	-	chr7.4:10015459-10015478	MS.gene018540:CDS	35.0%
AGGAATTCGAGCTGAAATAT+GGG	-	chr7.4:10015346-10015365	MS.gene018540:CDS	35.0%
CCAACAAAAGTCTTCTCATA+CGG	+	chr7.4:10015271-10015290	None:intergenic	35.0%
CTCAAATTCAAGAGATTGTC+TGG	-	chr7.4:10015395-10015414	MS.gene018540:CDS	35.0%
GTTTGTGACCATTTATCTCT+AGG	-	chr7.4:10015176-10015195	MS.gene018540:CDS	35.0%
TAGGAATTCGAGCTGAAATA+TGG	-	chr7.4:10015345-10015364	MS.gene018540:CDS	35.0%
TTAAAGCAAGGGGATAAGAT+TGG	-	chr7.4:10015470-10015489	MS.gene018540:CDS	35.0%
AAGAAGAGGCTTAAAGCAAG+GGG	-	chr7.4:10015460-10015479	MS.gene018540:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	10015155	10015574	10015155	ID=MS.gene018540
chr7.4	mRNA	10015155	10015574	10015155	ID=MS.gene018540.t1;Parent=MS.gene018540
chr7.4	exon	10015155	10015574	10015155	ID=MS.gene018540.t1.exon1;Parent=MS.gene018540.t1
chr7.4	CDS	10015155	10015574	10015155	ID=cds.MS.gene018540.t1;Parent=MS.gene018540.t1

Gene Sequence

>MS.gene018540

ATGGCTTATAGCAACAGTAGGGTTTGTGACCATTTATCTCTAGGAGTGTGTCCTTGTACAAGCAACGATGACTCTTGGAGTATTAAGAAAGTGTTGACAATGAGTGATACCGGCCGTATGAGAAGACTTTTGTTGGGTAAAAAATTGGCTGAGGATTTTGTGTTGTCTGTGTTGGGTGGTAATGTTGAGATAGGAATTCGAGCTGAAATATGGGATATTGACACTAAGTCCATGCACGTTCTCAAATTCAAGAGATTGTCTGGATCATATATTTTCACGGATGGTTGGGACGACAAGTTTGTAAAAAGAAGAGGCTTAAAGCAAGGGGATAAGATTGGTCTTTATTGGGATCAATATGACCGATTCTTCAATTTTACTGTTCTTGAGGCCAATTTTATTATTCCAAAAAAAGAAGAATAA

Protein sequence

>MS.gene018540.t1

MAYSNSRVCDHLSLGVCPCTSNDDSWSIKKVLTMSDTGRMRRLLLGKKLAEDFVLSVLGGNVEIGIRAEIWDIDTKSMHVLKFKRLSGSYIFTDGWDDKFVKRRGLKQGDKIGLYWDQYDRFFNFTVLEANFIIPKKEE